Citrus Sinensis ID: 046857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDAFSV
Secondary Structure (PSIPRED)
cccccccccccccEEEEEccccccEEcccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccEEcccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEEEcccccccEEcccccccccccccccEEEEccccccccccccccccccccEEEEccccccccccccccccccccccEEEEcccccccEEEccccccccccccccccccEEEccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHccEEEEccHHHHHHHHHccccccccccEEccccEEEEEcccccHHHHccccccEEccccEEEEEEccccccEccccccccccccEEEccccccccccccccHHHHHHHHHcccccccEEEccccccHHHHHccccccHHHcccccEEEEcccccHHHcccHHHHHHHHHHcEEEEcccHcHHEEEEcccccccccccccccccccEEEEcccHHHHHHcccccccEEcccccEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEEcccHcHHHHcccccccccHcccccEEEEcccHHHHHccccccHcccccEEEEcccccHHHHccHcHHHcHHcccEEEEccHHHHHHHHHHcccccccccEEcccccEEEHcccccccHccccccccccccccccc
Coil and Loop (DISEMBL)
malgsvgipnslvnlNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYlprltsfclenytlefpslervsmtrcpnmktfsqgivstpklhevqeEGELCRWEGNLNSTIQKCYEEMigfrdiqylqlshfprlkeiwhgqalpvRFFNYLAELEVDYctnmssaipANLLRCLNNLARLEVRNCDSLEEMLHLeelnadkehigplfprlfsltlidlpklkrfcnftgniiempmlwsltiencpdmetFISNSVVhvttdnkepqklTLEEYFLLAHQvqplfdekvafpQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISecsklqklvppswhlenlwglqvskchgLINVLTLSasknlvnlgrmkivdCKMMEEIIQSQVGEETEDCIVFGKLRyleldclpsltsfCLDLQDtldlfdafsv
Flexible Loop (DISEMBL)
malgsvgipnslVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGelcrwegnlNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLtlsasknlvnlGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDAFSV
Low Complexity Region (SEG)
MALGSVGIPNSLVNLNVSYCekieeiighvgeevkeNRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPanllrclnnlarlEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDAFSV
Disordered region (IsUnstruct)
******GIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDA***
Disordered Region (DISOPRED)
MALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL********PLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLA**************QLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEE************CIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDAFSV
Disordered Region (DISEMBL)
MALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDAFSV
Disordered Region (DISPRO)
*ALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDAFSV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDAFSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	439	2.2.26 [Sep-21-2011]
Q723X5	1775	Internalin-I OS=Listeria	yes	no	0.760	0.188	0.252	0.0003

>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 108/428 (25%), Positives = 176/428 (41%), Gaps = 94/428 (21%)

Query: 4   GSVGIPNSLVNLNVSYCEKIEEIIGHVGEEV-KENRIAFSNLKVLILD-----YLPRLTS 57
           G  G+ N L  LNVS  + +E+I       V KE      N+K L LD      LP L +
Sbjct: 219 GVEGLVN-LQELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELET 277

Query: 58  FCLENYTLEFPSLERVSMTRCPNMKT-FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQK 116
           F L+   L     +  S+ + P +K  + +G  S   L  ++   +L   + + N T  +
Sbjct: 278 FYLQENDLT----DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDAS-NCTDLE 332

Query: 117 CYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLR 176
              ++ G  +++ +QLS   +LKEI   + LP      L  +  D C     AI    L 
Sbjct: 333 TLGDISGLSELEMIQLSGCSKLKEITSLKDLP-----NLVNITADSC-----AIED--LG 380

Query: 177 CLNNLARLE---------VRNCDSLEEMLHLEELNADK---EHIGPL--FPRLFSLTLI- 221
            LNNL +L+         + N +++ +M  L+ L  D      IG L   P+L  L L  
Sbjct: 381 TLNNLPKLQTLILSDNKDLTNINAITDMPQLKTLALDGCGITSIGTLDNLPKLEKLDLKE 440

Query: 222 ----------DLPKLK------RFCNFTGNIIEMPMLWSL-----------TIENCPDME 254
                     DLP+L        +    G + ++P+L  L           T+ N P + 
Sbjct: 441 NQLTSISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRLSDVSTLTNFPSLN 500

Query: 255 TF-ISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHL 313
              +SN+V+   T  K  +  +L+E++   + V                 +S +H + +L
Sbjct: 501 YINVSNNVIR--TVGKMTELPSLKEFYAQNNNVSD---------------ISMIHDMPNL 543

Query: 314 WKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKN 373
            ++ D SN +  N+   +     KLQ L   S  + N      S  H L ++ T  A  N
Sbjct: 544 -RKVDASNNLITNIGTFD--NLPKLQNLDVHSNRITN-----TSVIHDLPSLETFYAQNN 595

Query: 374 LV-NLGRM 380
           L+ N+G M
Sbjct: 596 LITNIGTM 603

Unknown. A role in virulence could not be demonstrated.
Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.927	0.165	0.335	7e-49
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.562	0.104	0.429	2e-42
358344903	2248	Cc-nbs-lrr resistance protein [Medicago	0.849	0.165	0.304	1e-30
357439633	1039	Rpp4 candidate [Medicago truncatula] gi|	0.492	0.207	0.381	2e-27
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.797	0.261	0.301	3e-27
358344919	1995	NBS/LRR resistance protein-like protein	0.482	0.106	0.380	4e-27
358344895	906	Resistance protein RGC2, partial [Medica	0.656	0.317	0.326	1e-26
357439279	1065	Rpp4 candidate [Medicago truncatula] gi|	0.487	0.200	0.378	3e-26
358344279	1053	Rpp4 candidate [Medicago truncatula] gi|	0.487	0.203	0.369	4e-26
353685492	2756	Rpp4C3 [Phaseolus vulgaris]	0.558	0.088	0.328	2e-25

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 154/459 (33%), Positives = 234/459 (50%), Gaps = 52/459 (11%)

Query: 12   LVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLE 71
            L  + VS C+ + EI+ + G+E+ E+ I FS L+ L LD L RLT+ C  N  ++FPSLE
Sbjct: 1454 LGEMKVSNCKMLREIVANEGDEM-ESEITFSKLESLRLDDLTRLTTVCSVNCRVKFPSLE 1512

Query: 72   RVSMTRCPNMKTFSQGIVSTPKLHEVQ--EEGELCRWEGNLNSTIQKCYEEMIGFRDIQY 129
             + +T CP M+ FS GI++ PKL +V   +EG+  R  G+LN+T Q+ Y EM+G   +Q+
Sbjct: 1513 ELIVTACPRMEFFSHGIITAPKLEKVSLTKEGDKWRSVGDLNTTTQQLYREMVGLNGVQH 1572

Query: 130  LQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189
            LQLS FP L E WH Q LP  FF  L  L VD C+  SS++P+NLL  LN L  LEVRNC
Sbjct: 1573 LQLSEFPTLVEKWHDQ-LPAYFFYNLKSLVVDNCSFPSSSVPSNLLPFLNELEVLEVRNC 1631

Query: 190  DSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKR-FCNFTGNIIEMPMLWSLTIE 248
            DSL ++   E  N D  + G L P L    LIDLP+L+  + + +  I     L  L I 
Sbjct: 1632 DSLAKVFDFEWSN-DYGYAGHL-PNLKKFHLIDLPRLRHIWDDISSEISGFKNLTVLNIH 1689

Query: 249  NCPDMETFISNSVV---HVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLS 305
            NC  +  +I N ++    V     E +   L +  +     +     ++ FP L+ + L 
Sbjct: 1690 NCSSLR-YIFNPIICMGLVQLQEVEVRNCALVQAIIREGLAKEEAPNEIIFPLLKSISLE 1748

Query: 306  GLHKVQHLWK---------------------------ENDESNKVFANLE-RLEISECSK 337
             L  + + +                               ESN     +E ++E SE   
Sbjct: 1749 SLPSLINFFSGSGIVRCPSLKEITIVNCPATFTCTLLRESESNATDEIIETKVEFSELKI 1808

Query: 338  LQKL---VPPSWH---------LENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC 385
            L+     +   WH         +++L  L V  C  L + L+ S  + LV+L ++++ +C
Sbjct: 1809 LKLFSINIEKIWHAHQLEMYASIQHLASLTVDGCGHLKHALSSSMVQTLVHLKKLEVCNC 1868

Query: 386  KMMEEIIQSQ-VGEETEDCIVFGKLRYLELDCLPSLTSF 423
            +MMEE+I ++   EE+   ++  +L +L+L  LP L  F
Sbjct: 1869 RMMEEVIATEGFEEESTSRMLLRQLEFLKLKDLPELAQF 1907

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/256 (42%), Positives = 150/256 (58%), Gaps = 9/256 (3%)

Query: 12   LVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLE 71
            LV L V  C+ + EI+   G E+ ++ I FS L+ L L  L  LTSFC  NY   FPSL+
Sbjct: 1544 LVKLIVVNCKLVTEIVAKQGGEINDD-IIFSKLEYLELVRLENLTSFCPGNYNFIFPSLK 1602

Query: 72   RVSMTRCPNMKTFSQGIVSTPKLHEV----QEEGELCRWEGNLNSTIQKCYEEMIGFRDI 127
             + + +CP M+ FSQGI STPKL  V        E C W GNLN+T+Q+ Y +M+G   I
Sbjct: 1603 GMVVEQCPKMRIFSQGISSTPKLQGVYWKKDSMNEKC-WHGNLNATLQQLYTKMVGCNGI 1661

Query: 128  QYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVR 187
              L+LS FP+LK+ WHGQ LP   F+ L  L VD C  +S+AIP+N+L+ +NNL  L V+
Sbjct: 1662 WSLKLSDFPQLKDRWHGQ-LPFNCFSNLGNLTVDNCAIVSTAIPSNILKFMNNLKYLHVK 1720

Query: 188  NCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFT-GNIIEMPMLWSLT 246
            NC+SLE +  LE L+A   +   L P L  L L+DLP+L+   N     I++   L  L 
Sbjct: 1721 NCESLEGVFDLEGLSAQAGY-DRLLPNLQELHLVDLPELRHIWNRDLPGILDFRNLKRLK 1779

Query: 247  IENCPDMETFISNSVV 262
            + NC  +    S S+ 
Sbjct: 1780 VHNCSSLRNIFSPSMA 1795

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344903|ref|XP_003636525.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502460|gb|AES83663.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 206/437 (47%), Gaps = 64/437 (14%)

Query: 10   NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPS 69
            + L  L +  C  +EEII  V E V    IAF +L++L L+ LP L  FC     ++FPS
Sbjct: 1418 DKLTVLQIEDCSSLEEIITGV-ENVD---IAFVSLQILNLECLPSLVKFCSSECFMKFPS 1473

Query: 70   LERVSMTRCPNMKTFSQGIVSTPKLHEVQ--EEGELCRWEGNLNSTIQKCYEEMIGFRDI 127
            LE+V +  CP MK FS G  STP L +V+  E      W+GNLN+TI   +E+ +GF   
Sbjct: 1474 LEKVIVGECPRMKIFSAGHTSTPILQKVKIAENDSEWHWKGNLNNTIYNMFEDKVGFVSF 1533

Query: 128  QYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI-PANLLRCLNNLARLEV 186
            ++LQLS +P LKE+W+GQ      F  L  L V  C  +S  +   NLL  L NL  L+V
Sbjct: 1534 KHLQLSEYPELKELWYGQH-EHNTFRSLKYLVVHKCDFLSDVLFQPNLLEVLMNLEELDV 1592

Query: 187  RNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCN--------------- 231
             +C+SLE +  L++  A KE +     +L  L + +LPKLK                   
Sbjct: 1593 EDCNSLEAVFDLKDEFA-KEIVVRNSTQLKKLKISNLPKLKHVWKEDAFPSLDTLKLSSL 1651

Query: 232  ------FTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQ 285
                  +  N   M  L SL ++NC  ++    +++V    + K            L   
Sbjct: 1652 LNLNKVWDDNHQSMCNLTSLIVDNCVGLKYLFPSTLVKSFMNLKH-----------LEIS 1700

Query: 286  VQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS 345
              P+ +E +A    +K R + L +V HL K           LE++ + +   L+ +    
Sbjct: 1701 NCPMMEEIIA----KKERNNALKEV-HLLK-----------LEKIILKDMDNLKSI---- 1740

Query: 346  WH--LENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDC 403
            WH   E L  L+V+ C  ++ V   S       L ++++ +C ++EEI +    E   + 
Sbjct: 1741 WHHQFETLKMLEVNNCKKIVVVFPSSMQNTYNELEKLEVTNCALVEEIFELNFNENNSE- 1799

Query: 404  IVFGKLRYLELDCLPSL 420
             V  +L+ + +D L  L
Sbjct: 1800 EVMTQLKEVTIDGLFKL 1816

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula]

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 7/223 (3%)

Query: 12  LVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLE 71
           L  + +  C  +E+I+    +E KE  I F +L+ L L  LPR+  FC     + FP LE
Sbjct: 409 LTTMKIKMCNLLEDIVNGKEDETKE--IEFCSLQSLELISLPRVCRFCSCPCPITFPLLE 466

Query: 72  RVSMTRCPNMKTFSQGIVSTPKLHEVQ--EEGELCRWEGNLNSTIQKCYEEMIGFRDIQY 129
            V +  CP M+  S G+ +TP L  VQ  E  E   WEG+LN +++K +++ + FR+ +Y
Sbjct: 467 VVVVKECPRMELLSLGVTNTPNLQIVQIEESNEENHWEGDLNRSVKKLFDDKVAFREFKY 526

Query: 130 LQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI-PANLLRCLNNLARLEVRN 188
           L LS    L++IW+G+ L    F  L  L V+ C  +S  + P+N+++ L+ L  LEVRN
Sbjct: 527 LALSDHSELEDIWYGR-LDHNVFCNLKHLVVERCDFLSQVLFPSNVVQVLHGLEELEVRN 585

Query: 189 CDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCN 231
           CDSLE +  + +L   KE +     RL SLTL  LP LK   N
Sbjct: 586 CDSLEVVFDVRDLKT-KEILIKQRTRLKSLTLSGLPNLKHIWN 627

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 131/434 (30%), Positives = 194/434 (44%), Gaps = 84/434 (19%)

Query: 12   LVNLNVSYCEKIEEIIGHVGEEVKENRIA-----FSNLKVLILDYLPRLTSFCLE-NYTL 65
            L  + ++ C+ + EI+    +E+K+   A     F  L+ L L  LP+L +FC E N  L
Sbjct: 842  LKEITMTRCKSMGEIVPQGRKEIKDGDDAVNVPLFPELRYLTLQDLPKLINFCFEENLML 901

Query: 66   EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFR 125
              P    VS     +   F+Q                                       
Sbjct: 902  SKP----VSTIAGRSTSLFNQA-------------------------------------- 919

Query: 126  DIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLE 185
                          E+W+GQ L + F N L  L +  C ++    P++L + L NL  L+
Sbjct: 920  --------------EVWNGQ-LSLSFGN-LRSLMMQNCMSLLKVFPSSLFQSLQNLEVLK 963

Query: 186  VRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEM-----P 240
            V NC+ LEE+  LE LN D  H+G L P+L  + L     L+        IIE+     P
Sbjct: 964  VENCNQLEEIFDLEGLNVDGGHVG-LLPKLEEMCLTGCIPLEELILDGSRIIEIWQEQFP 1022

Query: 241  M-----LWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAH--QVQPLFDEK 293
            +     L  L+I    D+   I +S++         +KLT+     +    Q++ L DE+
Sbjct: 1023 VESFCRLRVLSICEYRDILVVIPSSMLQRL---HTLEKLTVRSCGSVKEVVQLEGLVDEE 1079

Query: 294  ---VAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLEN 350
                A  +LR+L L+ L ++++LWKEN      F NLE L+I +C  L  LVP S    N
Sbjct: 1080 NHFRALARLRELELNDLPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVPSSVSFHN 1139

Query: 351  LWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLR 410
            L  L +S C  LIN+L    +K+LV     KI    MM+E++ ++ GE   D I F KL 
Sbjct: 1140 LASLDISYCCSLINLLPPLIAKSLVQHKIFKIGRSDMMKEVVANE-GENAGDEITFCKLE 1198

Query: 411  YLELDCLPSLTSFC 424
             +EL  LP+LTSFC
Sbjct: 1199 EIELCVLPNLTSFC 1212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344919|ref|XP_003636533.1| NBS/LRR resistance protein-like protein [Medicago truncatula] gi|355502468|gb|AES83671.1| NBS/LRR resistance protein-like protein [Medicago truncatula]

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 127/221 (57%), Gaps = 9/221 (4%)

Query: 10   NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPS 69
            + L  L +  C  +EE++  V E V    IAF +L++L L+ LP L  F      ++FP 
Sbjct: 1360 DKLTVLQIKDCNSLEEVVNGV-ENVD---IAFISLQILNLECLPSLIKFSSSKCFMKFPL 1415

Query: 70   LERVSMTRCPNMKTFSQGIVSTPKLHEVQ--EEGELCRWEGNLNSTIQKCYEEMIGFRDI 127
            LE V +  CP MK FS+G  STP L +V+  E      W+GNLN+TI   +E  + F  +
Sbjct: 1416 LEEVIVRECPQMKIFSEGNTSTPILQKVKIAENNSEWLWKGNLNNTIYNMFENKVAFGKL 1475

Query: 128  QYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI-PANLLRCLNNLARLEV 186
            +YL LS +P LK++W+GQ L    F  L  L V+ C  +S  + P+N+++ L+ L  LEV
Sbjct: 1476 KYLALSDYPELKDVWYGQ-LHCNVFCSLKHLVVERCDFLSHVLFPSNVMKVLHTLEELEV 1534

Query: 187  RNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLK 227
            ++CDSLE +  ++ + + +E +     +L  LTL  LPKLK
Sbjct: 1535 KDCDSLEAVFDVKGMKS-QEILIKENTQLKRLTLSGLPKLK 1574

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344895|ref|XP_003636521.1| Resistance protein RGC2, partial [Medicago truncatula] gi|355502456|gb|AES83659.1| Resistance protein RGC2, partial [Medicago truncatula]

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 158/300 (52%), Gaps = 12/300 (4%)

Query: 127 IQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEV 186
           ++ L+LS+ P+LK +W         F  L+ + V  C ++ S  P ++ R +  L  L V
Sbjct: 113 LKKLKLSNLPKLKHVWKEDPHYTMRFQNLSVVSVADCKSLISLFPLSVARDMMQLQSLLV 172

Query: 187 RNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTG-NIIEMPMLWSL 245
            NC  +EE++  EE     E +  +FP L S+ L +L KLK F  F G + ++   L ++
Sbjct: 173 SNC-GIEEIVVKEE--GPDEMVKFVFPHLTSIELDNLTKLKAF--FVGVHSLQCKSLKTI 227

Query: 246 TIENCPDMETFISNSV-VHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRL 304
            +  CP +E F +  + +  ++ N E    T +  F+   +   L     + PQ R+L L
Sbjct: 228 KLFKCPRIELFKAEPLKLQESSKNVEQNISTYQPLFVFEEE---LLTSVESTPQFRELEL 284

Query: 305 SGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLIN 364
             LHK++++ KE  + +     LE +++ +CS L KLVP S     +  L+V+ C+GLIN
Sbjct: 285 LQLHKLKYICKEGFQMDPFLHFLESIDVCQCSSLIKLVPSSVTFSYMTYLEVTNCNGLIN 344

Query: 365 VLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFC 424
           ++T S +K+LV L  MKI  C  +E+I+  +  E  E  IVF  L+ LEL  L  L  FC
Sbjct: 345 LITHSTAKSLVKLTTMKIEMCNWLEDIVNGKEDETNE--IVFCSLQTLELISLQRLIRFC 402

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439279|ref|XP_003589916.1| Rpp4 candidate [Medicago truncatula] gi|355478964|gb|AES60167.1| Rpp4 candidate [Medicago truncatula]

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 8/222 (3%)

Query: 12  LVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLE 71
           L  + +  C  +E+I+   G+E + N I F +L+ L L  L RL  FC     ++FP LE
Sbjct: 430 LTTMKIKMCNWLEDIVN--GKEDEINDIVFCSLQTLELISLQRLCRFCSCPCPIKFPLLE 487

Query: 72  RVSMTRCPNMKTFSQGIVSTPKLHEVQ-EEGELCRWEGNLNSTIQKCYEEMIGFRDIQYL 130
            V +  CP MK FS G+ +T  L  VQ  EG    WEG+LN TI+K + + + F   +YL
Sbjct: 488 VVVVKECPRMKLFSLGVTNTTILQNVQTNEGN--HWEGDLNRTIKKMFCDKVAFCKFKYL 545

Query: 131 QLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI-PANLLRCLNNLARLEVRNC 189
            LS +P LK++W+GQ L    F  L  L V+ C  +S  + P+N+++ L  L  LEV++C
Sbjct: 546 ALSDYPELKDVWYGQ-LHCNVFCNLKHLLVERCDFLSHVLFPSNVMQVLQTLEELEVKDC 604

Query: 190 DSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCN 231
           DSLE +  ++ + + +  I     +L  LTL  LPKLK   N
Sbjct: 605 DSLEAVFDVKGMKSQEIFIKE-NTQLKRLTLSTLPKLKHIWN 645

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344279|ref|XP_003636218.1| Rpp4 candidate [Medicago truncatula] gi|355502153|gb|AES83356.1| Rpp4 candidate [Medicago truncatula]

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 126/222 (56%), Gaps = 8/222 (3%)

Query: 12  LVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLE 71
           L  + +  C  +E+I+   G+E + N I F +L+ L L  L RL  FC     ++FP LE
Sbjct: 420 LTTMKIKMCNCLEDIVN--GKEDEINDIVFCSLQTLELISLQRLCRFCSCPCPIKFPLLE 477

Query: 72  RVSMTRCPNMKTFSQGIVSTPKLHEVQ-EEGELCRWEGNLNSTIQKCYEEMIGFRDIQYL 130
            + +  CP M+ FS G+ +T  L  VQ +EG    WEG+LN TI+K + + + F   +YL
Sbjct: 478 VIVVKECPRMELFSLGVTNTTNLQNVQTDEGN--HWEGDLNRTIKKMFCDKVAFGKFKYL 535

Query: 131 QLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI-PANLLRCLNNLARLEVRNC 189
            LS +P LK++W+GQ L    F  L  L V+ C  +S  + P+N+++ L  L  LEV++C
Sbjct: 536 ALSDYPELKDVWYGQ-LHCNVFCNLKHLVVERCDFLSHVLFPSNVMQVLQTLEELEVKDC 594

Query: 190 DSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCN 231
           DSLE +  ++ + + +E +     +L  LTL  LPKLK   N
Sbjct: 595 DSLEAVFDVKGMKS-QEILIKENTQLKRLTLSTLPKLKHIWN 635

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353685492|gb|AER13169.1| Rpp4C3 [Phaseolus vulgaris]

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 11/256 (4%)

Query: 12   LVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLE 71
            LV L VS+CE +E I+    ++V    I F  LK + L  L  LT FC     L+FPSLE
Sbjct: 1483 LVTLKVSFCESMEIIVQQEEQQV----IEFRQLKAIELVSLESLTCFCSSKKCLKFPSLE 1538

Query: 72   RVSMTRCPNMKTF--SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQY 129
             + +T CP MKTF   Q   S  K+H    E +   WEGNLN+T++K     + + D + 
Sbjct: 1539 NLLVTDCPKMKTFCEKQSAPSLRKVHVAAGEKDTWYWEGNLNATLRKISTGQVSYEDSKE 1598

Query: 130  LQLSHFPRLKEIWHGQAL-PVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRN 188
            L L+     + IW  +A+ P ++F  L +L V+      S IP+ +L CL +L  LEV  
Sbjct: 1599 LTLTEDSH-QNIWSKKAVFPYKYFGNLKKLVVEDIKKKESVIPSKILACLKSLEELEVYG 1657

Query: 189  CDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFT-GNIIEMPMLWSLTI 247
            C+  + +  + ++  +K     +  RL  L L +LP L R  N     I+  P L  + +
Sbjct: 1658 CEKAKVVFDIHDIEMNK--TNGMVSRLKKLDLDELPNLTRVWNKNPQGIVSFPYLQEVIV 1715

Query: 248  ENCPDMETFISNSVVH 263
             +C  + T   + +V 
Sbjct: 1716 SDCSGITTLFPSPLVR 1731

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.202	0.071	0.351	0.00053

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 0.00053, P = 0.00053
 Identities = 33/94 (35%), Positives = 53/94 (56%)

Query:   298 QLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVS 357
             QLR L+   L   + L KE   S +   +L+ L++ +CS L KL PPS +  NL GL ++
Sbjct:   737 QLRNLKWMDLSDSRDL-KELPSSIEKLTSLQILDLRDCSSLVKL-PPSINANNLQGLSLT 794

Query:   358 KCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEI 391
              C     V+ L A +N+ NL ++K+ +C  + E+
Sbjct:   795 NCS---RVVKLPAIENVTNLHQLKLQNCSSLIEL 825


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      439       410   0.00079  118 3  11 22  0.36    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  278 KB (2145 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.08u 0.10s 32.18t   Elapsed:  00:00:01
  Total cpu time:  32.08u 0.10s 32.18t   Elapsed:  00:00:01
  Start:  Fri May 10 03:06:56 2013   End:  Fri May 10 03:06:57 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	439
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.001

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 61/239 (25%), Positives = 95/239 (39%), Gaps = 50/239 (20%)

Query: 155 LAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPR 214
           L  L++  C+++   +P+++ + LN L  L++  C++LE +             G     
Sbjct: 659 LETLKLSDCSSLVE-LPSSI-QYLNKLEDLDMSRCENLEIL-----------PTGINLKS 705

Query: 215 LFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKL 274
           L+ L L    +LK F                     PD+ T IS   +  T   + P  L
Sbjct: 706 LYRLNLSGCSRLKSF---------------------PDISTNISWLDLDETAIEEFPSNL 744

Query: 275 TLEEYFLLA----------HQVQPLFD-EKVAFPQLRKLRLSGLHKVQHLWKENDESNKV 323
            LE    L            +VQPL     +  P L +L LS +  +  L      S + 
Sbjct: 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL----PSSIQN 800

Query: 324 FANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKI 382
              LE LEI  C  L+ L P   +LE+L  L +S C  L     +S + + +NL R  I
Sbjct: 801 LHKLEHLEIENCINLETL-PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	439
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.67
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.59
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.58
KOG4341	483	consensus F-box protein containing LRR [General fu	99.4
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.26
KOG4341	483	consensus F-box protein containing LRR [General fu	99.23
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.22
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.05
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.42
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.41
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.41
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.89
PRK15386	426	type III secretion protein GogB; Provisional	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.82
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.74
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.73
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.61
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
PLN03150	623	hypothetical protein; Provisional	97.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.15
PLN03150	623	hypothetical protein; Provisional	97.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.72
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.66
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.45
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.22
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.07
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.45
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.07
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.27
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.16
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.8
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	92.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.54
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	86.33
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	83.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	82.7

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=1.7e-22  Score=218.74  Aligned_cols=359  Identities=16%  Similarity=0.076  Sum_probs=179.2

Q ss_pred             CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS   85 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~   85 (439)
                      |..+++|+.|+|++|.....+|.....       .+++|++|+++++    .+....+...+++|++|++++|.....+|
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~-------~l~~L~~L~Ls~n----~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p  157 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFT-------TSSSLRYLNLSNN----NFTGSIPRGSIPNLETLDLSNNMLSGEIP  157 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhc-------cCCCCCEEECcCC----ccccccCccccCCCCEEECcCCcccccCC
Confidence            556778888888887655455543321       3567777777773    22111123456777777777765444566


Q ss_pred             cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857           86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN  165 (439)
Q Consensus        86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~  165 (439)
                      ..++.+++|++|++++|.         ....+|..+.++++|+.|+++++.....++...    ..+++|+.|++.++ .
T Consensus       158 ~~~~~l~~L~~L~L~~n~---------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n-~  223 (968)
T PLN00113        158 NDIGSFSSLKVLDLGGNV---------LVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL----GQMKSLKWIYLGYN-N  223 (968)
T ss_pred             hHHhcCCCCCEEECccCc---------ccccCChhhhhCcCCCeeeccCCCCcCcCChHH----cCcCCccEEECcCC-c
Confidence            667777777777777632         222344455556667777776554333333222    34566666666665 3


Q ss_pred             cccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEE
Q 046857          166 MSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSL  245 (439)
Q Consensus       166 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  245 (439)
                      +...+|.. ++.+++|++|++++|.....++.         .+..+ ++|+.|++.++.....++....   .+++|+.|
T Consensus       224 l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~---------~l~~l-~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L  289 (968)
T PLN00113        224 LSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPS---------SLGNL-KNLQYLFLYQNKLSGPIPPSIF---SLQKLISL  289 (968)
T ss_pred             cCCcCChh-HhcCCCCCEEECcCceeccccCh---------hHhCC-CCCCEEECcCCeeeccCchhHh---hccCcCEE
Confidence            33334544 56666666666666532222211         01112 4555555555432222222221   34455555


Q ss_pred             eEecCCCcceeccccccccccCCCCC--CccCcceeeeeccc--------------cc-cccccccccCccceEeecCCC
Q 046857          246 TIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQ--------------VQ-PLFDEKVAFPQLRKLRLSGLH  308 (439)
Q Consensus       246 ~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~--------------~~-~~~~~~~~~~~L~~L~l~~~~  308 (439)
                      ++.+|. +....+. ....+++|+.|  +.+.+.+.++....              .. ........+++|+.|+++++.
T Consensus       290 ~Ls~n~-l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        290 DLSDNS-LSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             ECcCCe-eccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            554432 2211111 11234444444  22222221110000              00 000112234455555555432


Q ss_pred             CceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccc
Q 046857          309 KVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMM  388 (439)
Q Consensus       309 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l  388 (439)
                      -...++ ..+.   .+++|+.|+++++.....+|..+..+++|+.|++.+|+ ++..+|.. +..+++|+.|+++++. +
T Consensus       368 l~~~~p-~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~Ls~N~-l  440 (968)
T PLN00113        368 LTGEIP-EGLC---SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSE-FTKLPLVYFLDISNNN-L  440 (968)
T ss_pred             eEeeCC-hhHh---CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECChh-HhcCCCCCEEECcCCc-c
Confidence            211111 1111   34556666666655444555556667777777777654 44333543 4567777777777763 3


Q ss_pred             hhhccccccccCCCceEeccccEEecCCCCC
Q 046857          389 EEIIQSQVGEETEDCIVFGKLRYLELDCLPS  419 (439)
Q Consensus       389 ~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~  419 (439)
                      .....       .....+++|+.|++++|.-
T Consensus       441 ~~~~~-------~~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        441 QGRIN-------SRKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             cCccC-------hhhccCCCCcEEECcCcee
Confidence            22221       1345678889998888753

>PLN03210 Resistant to P

Probab=99.88  E-value=1.5e-21  Score=212.40  Aligned_cols=286  Identities=20%  Similarity=0.326  Sum_probs=145.2

Q ss_pred             CccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCC
Q 046857           69 SLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALP  148 (439)
Q Consensus        69 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~  148 (439)
                      +|+.|++.++ .++.+|..+ ...+|++|++.+          ..+..+|.++..+++|+.|+++++..+..++..    
T Consensus       590 ~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~----------s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l----  653 (1153)
T PLN03210        590 KLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQG----------SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL----  653 (1153)
T ss_pred             ccEEEEecCC-CCCCCCCcC-CccCCcEEECcC----------ccccccccccccCCCCCEEECCCCCCcCcCCcc----
Confidence            3555555553 344555444 345555555555          223334444445555555555555444444321    


Q ss_pred             cCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccc
Q 046857          149 VRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKR  228 (439)
Q Consensus       149 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  228 (439)
                       ..+++|+.|++.+|..+.. +|.. +..+++|+.|++++|+.++.++..  .        .+ ++|+.|++++|..++.
T Consensus       654 -s~l~~Le~L~L~~c~~L~~-lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~--i--------~l-~sL~~L~Lsgc~~L~~  719 (1153)
T PLN03210        654 -SMATNLETLKLSDCSSLVE-LPSS-IQYLNKLEDLDMSRCENLEILPTG--I--------NL-KSLYRLNLSGCSRLKS  719 (1153)
T ss_pred             -ccCCcccEEEecCCCCccc-cchh-hhccCCCCEEeCCCCCCcCccCCc--C--------CC-CCCCEEeCCCCCCccc
Confidence             1345555555555555543 3433 455555555555555555444321  0        02 5555555555554444


Q ss_pred             cccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC----------------------------------Ccc
Q 046857          229 FCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP----------------------------------QKL  274 (439)
Q Consensus       229 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L----------------------------------~~~  274 (439)
                      ++..      .++|+.|++.++ .+..++..   ..+++|+.|                                  ++.
T Consensus       720 ~p~~------~~nL~~L~L~~n-~i~~lP~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~  789 (1153)
T PLN03210        720 FPDI------STNISWLDLDET-AIEEFPSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP  789 (1153)
T ss_pred             cccc------cCCcCeeecCCC-cccccccc---ccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence            4321      134555555443 22322211   123333333                                  111


Q ss_pred             CcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceE
Q 046857          275 TLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGL  354 (439)
Q Consensus       275 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  354 (439)
                      .+..++          .....+++|+.|++.+|..++.++...     .+++|++|++++|..+..+|..   .++|+.|
T Consensus       790 ~l~~lP----------~si~~L~~L~~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L  851 (1153)
T PLN03210        790 SLVELP----------SSIQNLHKLEHLEIENCINLETLPTGI-----NLESLESLDLSGCSRLRTFPDI---STNISDL  851 (1153)
T ss_pred             CccccC----------hhhhCCCCCCEEECCCCCCcCeeCCCC-----CccccCEEECCCCCcccccccc---ccccCEe
Confidence            111111          123344555555555555555544331     3455555555555555544432   2455555


Q ss_pred             EEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCccee
Q 046857          355 QVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSF  423 (439)
Q Consensus       355 ~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~  423 (439)
                      ++.+ +.++.+ |.. +..+++|+.|++.+|++++.++.        .+..+++|+.+++++|++|+.+
T Consensus       852 ~Ls~-n~i~~i-P~s-i~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        852 NLSR-TGIEEV-PWW-IEKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             ECCC-CCCccC-hHH-HhcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecCCCcccccc
Confidence            5554 345554 543 45678888888888888887765        4566788888888888888754

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=5e-22  Score=215.22  Aligned_cols=369  Identities=15%  Similarity=0.067  Sum_probs=194.2

Q ss_pred             CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF   84 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l   84 (439)
                      .++++++|++|++++|...+.+|..++        .+++|++|+++++.-....+  ..+..+++|++|++.+|.....+
T Consensus       183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~--------~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~  252 (968)
T PLN00113        183 SLTNLTSLEFLTLASNQLVGQIPRELG--------QMKSLKWIYLGYNNLSGEIP--YEIGGLTSLNHLDLVYNNLTGPI  252 (968)
T ss_pred             hhhhCcCCCeeeccCCCCcCcCChHHc--------CcCCccEEECcCCccCCcCC--hhHhcCCCCCEEECcCceecccc
Confidence            467899999999999987777776555        46788888888742212222  22567788888888877544467


Q ss_pred             ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCC------------------C
Q 046857           85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQ------------------A  146 (439)
Q Consensus        85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~------------------~  146 (439)
                      |..++.+++|++|++++|...         ..+|..+..+++|++|+++++.....++...                  .
T Consensus       253 p~~l~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~  323 (968)
T PLN00113        253 PSSLGNLKNLQYLFLYQNKLS---------GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK  323 (968)
T ss_pred             ChhHhCCCCCCEEECcCCeee---------ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence            777777888888887774432         1223333344555555555443211211111                  0


Q ss_pred             CC--cCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857          147 LP--VRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       147 l~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                      ++  ...+++|+.|++.+|. +...+|.. ++.+++|+.|+++++.....++.         .+... ++|+.|++.++.
T Consensus       324 ~~~~~~~l~~L~~L~L~~n~-l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~---------~~~~~-~~L~~L~l~~n~  391 (968)
T PLN00113        324 IPVALTSLPRLQVLQLWSNK-FSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPE---------GLCSS-GNLFKLILFSNS  391 (968)
T ss_pred             CChhHhcCCCCCEEECcCCC-CcCcCChH-HhCCCCCcEEECCCCeeEeeCCh---------hHhCc-CCCCEEECcCCE
Confidence            00  0234444444444432 22223332 44444555555544322111110         00001 334444444332


Q ss_pred             cccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccc--------------c
Q 046857          225 KLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQ--------------P  288 (439)
Q Consensus       225 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~--------------~  288 (439)
                      ....++...   ..+++|+.|++.+|. +....+.. ...+++|+.|  +.+.+.+.++......              .
T Consensus       392 l~~~~p~~~---~~~~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~  466 (968)
T PLN00113        392 LEGEIPKSL---GACRSLRRVRLQDNS-FSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG  466 (968)
T ss_pred             ecccCCHHH---hCCCCCCEEECcCCE-eeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence            222222211   134555555555532 22211111 1233444433  2222222111000000              0


Q ss_pred             ccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccCh
Q 046857          289 LFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTL  368 (439)
Q Consensus       289 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~  368 (439)
                      ..+.....++|+.|+++++.-...++ ..+.   .+++|++|++++|.....+|..+..+++|++|++++|. ++..+|.
T Consensus       467 ~~p~~~~~~~L~~L~ls~n~l~~~~~-~~~~---~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~  541 (968)
T PLN00113        467 GLPDSFGSKRLENLDLSRNQFSGAVP-RKLG---SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ-LSGQIPA  541 (968)
T ss_pred             ecCcccccccceEEECcCCccCCccC-hhhh---hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc-ccccCCh
Confidence            00011123466666666653222221 1122   56788888888887666788888888999999998864 6655566


Q ss_pred             hHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCccee
Q 046857          369 SASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSF  423 (439)
Q Consensus       369 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~  423 (439)
                      . +..+++|+.|++++|.....++.        .+.+++.|+++++++|+-...+
T Consensus       542 ~-~~~l~~L~~L~Ls~N~l~~~~p~--------~l~~l~~L~~l~ls~N~l~~~~  587 (968)
T PLN00113        542 S-FSEMPVLSQLDLSQNQLSGEIPK--------NLGNVESLVQVNISHNHLHGSL  587 (968)
T ss_pred             h-HhCcccCCEEECCCCcccccCCh--------hHhcCcccCEEeccCCcceeeC
Confidence            4 56788999999998855444543        5677889999999998755433

>PLN03210 Resistant to P

Probab=99.87  E-value=2.3e-21  Score=210.82  Aligned_cols=314  Identities=18%  Similarity=0.228  Sum_probs=190.2

Q ss_pred             ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCc
Q 046857           10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIV   89 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~   89 (439)
                      ++|+.|.+.+++ ++.+|..+.         +.+|+.|++.+ .++..++.+  +..+++|+.|++++|..++.+|. ++
T Consensus       589 ~~Lr~L~~~~~~-l~~lP~~f~---------~~~L~~L~L~~-s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~~ip~-ls  654 (1153)
T PLN03210        589 PKLRLLRWDKYP-LRCMPSNFR---------PENLVKLQMQG-SKLEKLWDG--VHSLTGLRNIDLRGSKNLKEIPD-LS  654 (1153)
T ss_pred             cccEEEEecCCC-CCCCCCcCC---------ccCCcEEECcC-ccccccccc--cccCCCCCEEECCCCCCcCcCCc-cc
Confidence            457888888764 566666543         46778888877 344444332  45677788888877777777764 56


Q ss_pred             CccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc
Q 046857           90 STPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA  169 (439)
Q Consensus        90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~  169 (439)
                      .+++|++|++++         +.....+|..+..+++|+.|++++|..++.++...     .+++|+.|++.+|..+.. 
T Consensus       655 ~l~~Le~L~L~~---------c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-----~l~sL~~L~Lsgc~~L~~-  719 (1153)
T PLN03210        655 MATNLETLKLSD---------CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-----NLKSLYRLNLSGCSRLKS-  719 (1153)
T ss_pred             cCCcccEEEecC---------CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-----CCCCCCEEeCCCCCCccc-
Confidence            677888888776         33445566666777778888888777776655433     467777888877766554 


Q ss_pred             cchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCC-----cccCCCCccE
Q 046857          170 IPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTG-----NIIEMPMLWS  244 (439)
Q Consensus       170 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~~~~~L~~  244 (439)
                      +|..    ..+|++|++.++ .++.++...           .+++|+.|.+.++.... ++....     ....+++|+.
T Consensus       720 ~p~~----~~nL~~L~L~~n-~i~~lP~~~-----------~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        720 FPDI----STNISWLDLDET-AIEEFPSNL-----------RLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             cccc----cCCcCeeecCCC-ccccccccc-----------cccccccccccccchhh-ccccccccchhhhhccccchh
Confidence            3321    356777777754 344433210           02555555555432211 000000     0112345666


Q ss_pred             EeEecCCCcceeccccccccccCCCCC---CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccc
Q 046857          245 LTIENCPDMETFISNSVVHVTTDNKEP---QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESN  321 (439)
Q Consensus       245 L~l~~c~~l~~~~~~~~~~~~~~L~~L---~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~  321 (439)
                      |++.+|+.+..+|..  ..++++|+.|   +|..++.++.           ...+++|+.|++++|..+..++.      
T Consensus       783 L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~-----------~~~L~sL~~L~Ls~c~~L~~~p~------  843 (1153)
T PLN03210        783 LFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPT-----------GINLESLESLDLSGCSRLRTFPD------  843 (1153)
T ss_pred             eeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCC-----------CCCccccCEEECCCCCccccccc------
Confidence            666655544444321  2345555555   4444444321           22467788888888777665431      


Q ss_pred             cccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhc
Q 046857          322 KVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEII  392 (439)
Q Consensus       322 ~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~  392 (439)
                       ..++|++|+++++ .++.+|..+..+++|+.|++++|++++.+ |.. ...+++|+.+++.+|.+++.+.
T Consensus       844 -~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l-~~~-~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        844 -ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRV-SLN-ISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             -cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCcc-Ccc-cccccCCCeeecCCCccccccc
Confidence             2357778887764 56677777777888888888888888776 443 3567788888888887776553

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.67  E-value=3.1e-17  Score=155.49  Aligned_cols=140  Identities=16%  Similarity=0.246  Sum_probs=76.0

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCc-----------
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGN-----------  109 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-----------  109 (439)
                      ++.-++|++++ .++.+++.. .+.++++|+++++.+ +.+..+|...+...+|+.|++..|.+.....           
T Consensus        77 p~~t~~Ldlsn-Nkl~~id~~-~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs  153 (873)
T KOG4194|consen   77 PSQTQTLDLSN-NKLSHIDFE-FFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS  153 (873)
T ss_pred             ccceeeeeccc-cccccCcHH-HHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence            45667788888 555555332 256788888888888 4788888877777778888887744321110           


Q ss_pred             --C-chhhhhhhhhhc-CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceee
Q 046857          110 --L-NSTIQKCYEEMI-GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLE  185 (439)
Q Consensus       110 --~-~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~  185 (439)
                        + .+.+..++..-. .-.++++|++.++. ++.+..+. +  ..+.+|..|.++++ +++. +|...++.+++|+.|+
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~-F--~~lnsL~tlkLsrN-ritt-Lp~r~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH-F--DSLNSLLTLKLSRN-RITT-LPQRSFKRLPKLESLD  227 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeecccc-cccccccc-c--cccchheeeecccC-cccc-cCHHHhhhcchhhhhh
Confidence              0 011122222111 12445555555332 33332222 1  23455666666553 3443 4555566666666666


Q ss_pred             eccc
Q 046857          186 VRNC  189 (439)
Q Consensus       186 l~~~  189 (439)
                      +..+
T Consensus       228 LnrN  231 (873)
T KOG4194|consen  228 LNRN  231 (873)
T ss_pred             cccc
Confidence            6643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.65  E-value=6.1e-17  Score=153.57  Aligned_cols=57  Identities=12%  Similarity=0.141  Sum_probs=39.8

Q ss_pred             CCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccC
Q 046857           67 FPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSH  134 (439)
Q Consensus        67 l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~  134 (439)
                      .+.-+.|+++++ ++..+ ++++-.++||+++++..          +....+|+......+|+.|++.+
T Consensus        77 p~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~----------N~Lt~IP~f~~~sghl~~L~L~~  134 (873)
T KOG4194|consen   77 PSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNK----------NELTRIPRFGHESGHLEKLDLRH  134 (873)
T ss_pred             ccceeeeecccc-ccccCcHHHHhcCCcceeeeecc----------chhhhcccccccccceeEEeeec
Confidence            355778999994 66643 45678899999999999          44455555555556666666663

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.63  E-value=8.5e-18  Score=160.47  Aligned_cols=341  Identities=15%  Similarity=0.168  Sum_probs=203.0

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc--ccc
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK--TFS   85 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~   85 (439)
                      .++.++-|.|.+- .++.+|+..+        .+.+|++|.+.. .++..+.  ..+..+|+||.+.++.+ .++  .+|
T Consensus        30 qMt~~~WLkLnrt-~L~~vPeEL~--------~lqkLEHLs~~H-N~L~~vh--GELs~Lp~LRsv~~R~N-~LKnsGiP   96 (1255)
T KOG0444|consen   30 QMTQMTWLKLNRT-KLEQVPEELS--------RLQKLEHLSMAH-NQLISVH--GELSDLPRLRSVIVRDN-NLKNSGIP   96 (1255)
T ss_pred             HhhheeEEEechh-hhhhChHHHH--------HHhhhhhhhhhh-hhhHhhh--hhhccchhhHHHhhhcc-ccccCCCC
Confidence            3455555555553 3555554433        466777777766 2222222  23566788888888774 444  578


Q ss_pred             cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857           86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN  165 (439)
Q Consensus        86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~  165 (439)
                      .++-++.-|..|+++.          +..+++|..+...+++-.|+++++ +++.||... +  -++..|-.|+++.+ .
T Consensus        97 ~diF~l~dLt~lDLSh----------NqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~l-f--inLtDLLfLDLS~N-r  161 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSH----------NQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSL-F--INLTDLLFLDLSNN-R  161 (1255)
T ss_pred             chhcccccceeeecch----------hhhhhcchhhhhhcCcEEEEcccC-ccccCCchH-H--HhhHhHhhhccccc-h
Confidence            8888888888888887          667778888888888888888844 466665543 1  13555667788774 5


Q ss_pred             cccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccc-ccccccCCCcccCCCCccE
Q 046857          166 MSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPK-LKRFCNFTGNIIEMPMLWS  244 (439)
Q Consensus       166 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~  244 (439)
                      +.. .|.. ++.+..|++|++++++-..  +.+..+..       + ++|++|.+++... +.++|.+..   .+.+|..
T Consensus       162 Le~-LPPQ-~RRL~~LqtL~Ls~NPL~h--fQLrQLPs-------m-tsL~vLhms~TqRTl~N~Ptsld---~l~NL~d  226 (1255)
T KOG0444|consen  162 LEM-LPPQ-IRRLSMLQTLKLSNNPLNH--FQLRQLPS-------M-TSLSVLHMSNTQRTLDNIPTSLD---DLHNLRD  226 (1255)
T ss_pred             hhh-cCHH-HHHHhhhhhhhcCCChhhH--HHHhcCcc-------c-hhhhhhhcccccchhhcCCCchh---hhhhhhh
Confidence            554 4555 7778888888888764221  11111111       3 6667777766543 345555543   6778888


Q ss_pred             EeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcccc
Q 046857          245 LTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNK  322 (439)
Q Consensus       245 L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  322 (439)
                      ++++. +++..+| .+ +..+++|++|  +.+.++.+--          ..+.+.+|++|+++.. .++.++....    
T Consensus       227 vDlS~-N~Lp~vP-ec-ly~l~~LrrLNLS~N~iteL~~----------~~~~W~~lEtLNlSrN-QLt~LP~avc----  288 (1255)
T KOG0444|consen  227 VDLSE-NNLPIVP-EC-LYKLRNLRRLNLSGNKITELNM----------TEGEWENLETLNLSRN-QLTVLPDAVC----  288 (1255)
T ss_pred             ccccc-cCCCcch-HH-HhhhhhhheeccCcCceeeeec----------cHHHHhhhhhhccccc-hhccchHHHh----
Confidence            88876 4454443 22 2466777777  6666665321          2344557777777663 3454433311    


Q ss_pred             ccCCcceEEeecCC-CcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCC
Q 046857          323 VFANLERLEISECS-KLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETE  401 (439)
Q Consensus       323 ~~~~L~~L~l~~c~-~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  401 (439)
                      .++.|+.|.+.++. .+..+|.+++++.+|+.+...+ +.++-+ |+++ ..+++|+.|.++.. .+-+++.        
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElV-PEgl-cRC~kL~kL~L~~N-rLiTLPe--------  356 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELV-PEGL-CRCVKLQKLKLDHN-RLITLPE--------  356 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccC-chhh-hhhHHHHHhccccc-ceeechh--------
Confidence            35566666665443 2335667777777777766664 344443 6643 35666776666544 4444443        


Q ss_pred             CceEeccccEEecCCCCCcc
Q 046857          402 DCIVFGKLRYLELDCLPSLT  421 (439)
Q Consensus       402 ~~~~l~~L~~l~l~~c~~l~  421 (439)
                      .+--++.|+.|++++.|+|.
T Consensus       357 aIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  357 AIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhhhcCCcceeeccCCcCcc
Confidence            34446677777777777775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.59  E-value=1.2e-17  Score=159.43  Aligned_cols=343  Identities=22%  Similarity=0.225  Sum_probs=236.0

Q ss_pred             CccccCceEEEccccccce-eccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857            7 GIPNSLVNLNVSYCEKIEE-IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS   85 (439)
Q Consensus         7 ~~~~~L~~L~l~~c~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~   85 (439)
                      +-++-.+-.++++|..-+. .|.+..        .++.++.|.|.. +.+..++..  ++.+.+|++|.+.++ ++..+-
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~--------qMt~~~WLkLnr-t~L~~vPeE--L~~lqkLEHLs~~HN-~L~~vh   71 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVE--------QMTQMTWLKLNR-TKLEQVPEE--LSRLQKLEHLSMAHN-QLISVH   71 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHH--------HhhheeEEEech-hhhhhChHH--HHHHhhhhhhhhhhh-hhHhhh
Confidence            3445556666676665532 233332        577888888877 555555433  667888888888884 566665


Q ss_pred             cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857           86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN  165 (439)
Q Consensus        86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~  165 (439)
                      -++..+|.|+.+.+..+.+        ..+.+|..+..+..|..|+++. +++.+.|.+.    +.-.++..|+++++ +
T Consensus        72 GELs~Lp~LRsv~~R~N~L--------KnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~L----E~AKn~iVLNLS~N-~  137 (1255)
T KOG0444|consen   72 GELSDLPRLRSVIVRDNNL--------KNSGIPTDIFRLKDLTILDLSH-NQLREVPTNL----EYAKNSIVLNLSYN-N  137 (1255)
T ss_pred             hhhccchhhHHHhhhcccc--------ccCCCCchhcccccceeeecch-hhhhhcchhh----hhhcCcEEEEcccC-c
Confidence            5667788888888776332        2244677777899999999995 4588777665    46678999999885 5


Q ss_pred             cccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEE
Q 046857          166 MSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSL  245 (439)
Q Consensus       166 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  245 (439)
                      +.. +|...+.++.-|-.|+++. +.++.+|+.-         ..+ ..|++|+|++.+- ..+...  ..+.+.+|+.|
T Consensus       138 Iet-IPn~lfinLtDLLfLDLS~-NrLe~LPPQ~---------RRL-~~LqtL~Ls~NPL-~hfQLr--QLPsmtsL~vL  202 (1255)
T KOG0444|consen  138 IET-IPNSLFINLTDLLFLDLSN-NRLEMLPPQI---------RRL-SMLQTLKLSNNPL-NHFQLR--QLPSMTSLSVL  202 (1255)
T ss_pred             ccc-CCchHHHhhHhHhhhcccc-chhhhcCHHH---------HHH-hhhhhhhcCCChh-hHHHHh--cCccchhhhhh
Confidence            655 7888899999999999996 4777776521         113 7899999998752 222111  11245566667


Q ss_pred             eEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccc
Q 046857          246 TIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKV  323 (439)
Q Consensus       246 ~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~  323 (439)
                      .+++-..-....|.+ +.++.+|..+  +++++..++-          +.-.+++|+.|++++. .++.+....    +.
T Consensus       203 hms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~vPe----------cly~l~~LrrLNLS~N-~iteL~~~~----~~  266 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPIVPE----------CLYKLRNLRRLNLSGN-KITELNMTE----GE  266 (1255)
T ss_pred             hcccccchhhcCCCc-hhhhhhhhhccccccCCCcchH----------HHhhhhhhheeccCcC-ceeeeeccH----HH
Confidence            776643222222322 2466677766  7887776532          3456789999999984 566663331    15


Q ss_pred             cCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCc
Q 046857          324 FANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDC  403 (439)
Q Consensus       324 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  403 (439)
                      ..+|++|+++.+ +++.+|..+.+++.|++|.+.+ ++++.-...+.++.+..|+.+...+. +++-++.        .+
T Consensus       267 W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPE--------gl  335 (1255)
T KOG0444|consen  267 WENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE--------GL  335 (1255)
T ss_pred             Hhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-ccccCch--------hh
Confidence            668999999885 7889999999999999999987 55664433346788999999888876 7777776        78


Q ss_pred             eEeccccEEecCCC
Q 046857          404 IVFGKLRYLELDCL  417 (439)
Q Consensus       404 ~~l~~L~~l~l~~c  417 (439)
                      ..++.|+.|.+.+.
T Consensus       336 cRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHN  349 (1255)
T ss_pred             hhhHHHHHhccccc
Confidence            88999999887654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.58  E-value=2.5e-17  Score=149.60  Aligned_cols=217  Identities=21%  Similarity=0.261  Sum_probs=117.6

Q ss_pred             CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF   84 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l   84 (439)
                      .+.++..|+.|++.+++ +..+|+.+++        +.+++.|+.+. .++.+++  +.++..++|+.++.++ ..+..+
T Consensus        63 dl~nL~~l~vl~~~~n~-l~~lp~aig~--------l~~l~~l~vs~-n~ls~lp--~~i~s~~~l~~l~~s~-n~~~el  129 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNK-LSQLPAAIGE--------LEALKSLNVSH-NKLSELP--EQIGSLISLVKLDCSS-NELKEL  129 (565)
T ss_pred             hhhcccceeEEEeccch-hhhCCHHHHH--------HHHHHHhhccc-chHhhcc--HHHhhhhhhhhhhccc-cceeec
Confidence            34456666666666665 3334444442        33555555555 2222222  2244555555555555 344455


Q ss_pred             ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857           85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT  164 (439)
Q Consensus        85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~  164 (439)
                      |.+++.+..|+.++...          +.++.+|..+..+.+|..+.+.++. +++.+...    -.+..|++|+...  
T Consensus       130 ~~~i~~~~~l~dl~~~~----------N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~----i~m~~L~~ld~~~--  192 (565)
T KOG0472|consen  130 PDSIGRLLDLEDLDATN----------NQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH----IAMKRLKHLDCNS--  192 (565)
T ss_pred             CchHHHHhhhhhhhccc----------cccccCchHHHHHHHHHHhhccccc-hhhCCHHH----HHHHHHHhcccch--
Confidence            55555555555555444          5666677777777777777777443 44444332    1356667666533  


Q ss_pred             ccccccchhHHhhccccceeeeccccccchhcccccccccc--------------CcccccccccceEecCCcccccccc
Q 046857          165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADK--------------EHIGPLFPRLFSLTLIDLPKLKRFC  230 (439)
Q Consensus       165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~l~~~~  230 (439)
                      +.-..+|.. ++++.+|+-|.+..+ ++..+|.+.+...+.              +...++ +++.+|+++.. +++++|
T Consensus       193 N~L~tlP~~-lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L-~~l~vLDLRdN-klke~P  268 (565)
T KOG0472|consen  193 NLLETLPPE-LGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHL-NSLLVLDLRDN-KLKEVP  268 (565)
T ss_pred             hhhhcCChh-hcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhccc-ccceeeecccc-ccccCc
Confidence            333335655 666666666666643 444444433322110              011233 77778888775 567766


Q ss_pred             cCCCcccCCCCccEEeEecCCCcceeccc
Q 046857          231 NFTGNIIEMPMLWSLTIENCPDMETFISN  259 (439)
Q Consensus       231 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  259 (439)
                      ....   .+++|.+|++++ +.++.+++.
T Consensus       269 de~c---lLrsL~rLDlSN-N~is~Lp~s  293 (565)
T KOG0472|consen  269 DEIC---LLRSLERLDLSN-NDISSLPYS  293 (565)
T ss_pred             hHHH---HhhhhhhhcccC-CccccCCcc
Confidence            6554   567777888777 455555433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.40  E-value=7.6e-15  Score=134.40  Aligned_cols=313  Identities=15%  Similarity=0.138  Sum_probs=172.1

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCccc--cccCCcCccCccceeecCce-eeecCcCchhhhhhh
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT--FSQGIVSTPKLHEVQEEGEL-CRWEGNLNSTIQKCY  118 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~l~  118 (439)
                      ..|+.|.+++|.....-+.......+|++++|.+.+|.+++.  +-.--..+++|+++++..|. |+     +..++.+-
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT-----~~~Lk~la  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT-----DVSLKYLA  212 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH-----HHHHHHHH
Confidence            356777777765444333333345677777777777776652  11112336777777766532 11     11122222


Q ss_pred             hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccc
Q 046857          119 EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHL  198 (439)
Q Consensus       119 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  198 (439)
                         .++++|++|+++||+.++.-  +...-...+.+++.+..++|..........+.+.+.-+.++++..|+.+++...+
T Consensus       213 ---~gC~kL~~lNlSwc~qi~~~--gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~  287 (483)
T KOG4341|consen  213 ---EGCRKLKYLNLSWCPQISGN--GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW  287 (483)
T ss_pred             ---HhhhhHHHhhhccCchhhcC--cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence               26788888888888876641  1100112455577777777765553222222334455666676677666543211


Q ss_pred             cccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC---CccC
Q 046857          199 EELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP---QKLT  275 (439)
Q Consensus       199 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L---~~~~  275 (439)
                      ....        ....|+.|..++|.++....... ...++++|+.+-+..|..+++.-...+..+++.|+++   .|..
T Consensus       288 ~i~~--------~c~~lq~l~~s~~t~~~d~~l~a-Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  288 LIAC--------GCHALQVLCYSSCTDITDEVLWA-LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             HHhh--------hhhHhhhhcccCCCCCchHHHHH-HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence            1111        12678888888887776654444 3457788888888888877776555555666777766   3322


Q ss_pred             cceeeeeccccccccccccccCccceEeecCCCCceeccccCCc-cccccCCcceEEeecCCCccc-ccCCCccCCCcce
Q 046857          276 LEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDE-SNKVFANLERLEISECSKLQK-LVPPSWHLENLWG  353 (439)
Q Consensus       276 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~  353 (439)
                      ..+.        .........|.|+.+.++.|..+++..+..+. .......|+.+.+.+||.+++ ....+.++++|+.
T Consensus       359 ~~d~--------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler  430 (483)
T KOG4341|consen  359 ITDG--------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER  430 (483)
T ss_pred             ehhh--------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence            2220        00011234567777777766655544222111 111345667777777776653 2344456777777


Q ss_pred             EEEccCCCcccccChhHHhhccccceEE
Q 046857          354 LQVSKCHGLINVLTLSASKNLVNLGRMK  381 (439)
Q Consensus       354 L~l~~c~~l~~l~p~~~~~~l~~L~~L~  381 (439)
                      +++.+|..++.-....+..++|++++..
T Consensus       431 i~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  431 IELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             eeeechhhhhhhhhHHHHhhCccceehh
Confidence            7777776666543333445555555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.30  E-value=9.5e-14  Score=126.62  Aligned_cols=347  Identities=20%  Similarity=0.167  Sum_probs=198.5

Q ss_pred             CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS   85 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~   85 (439)
                      ++.+.+|..|++.+++. ..+++.        .+.++.|+.|+... .-+..++  +.++.+.+|+.|+++. .++..+|
T Consensus       156 ~~~~~~l~~l~~~~n~l-~~l~~~--------~i~m~~L~~ld~~~-N~L~tlP--~~lg~l~~L~~LyL~~-Nki~~lP  222 (565)
T KOG0472|consen  156 MVNLSKLSKLDLEGNKL-KALPEN--------HIAMKRLKHLDCNS-NLLETLP--PELGGLESLELLYLRR-NKIRFLP  222 (565)
T ss_pred             HHHHHHHHHhhccccch-hhCCHH--------HHHHHHHHhcccch-hhhhcCC--hhhcchhhhHHHHhhh-cccccCC
Confidence            55677788888888763 333332        12467777777655 2223333  3367778888888887 4667777


Q ss_pred             cCCcCccCccceeecCceeeecCcCchhhhhhhhhhc-CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857           86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI-GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT  164 (439)
Q Consensus        86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~  164 (439)
                       +|+.+..|+++++..          +.+.-+|..+. .++++..|++.++ +++++|.+.    ..+.+|.+|++++. 
T Consensus       223 -ef~gcs~L~Elh~g~----------N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~----clLrsL~rLDlSNN-  285 (565)
T KOG0472|consen  223 -EFPGCSLLKELHVGE----------NQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI----CLLRSLERLDLSNN-  285 (565)
T ss_pred             -CCCccHHHHHHHhcc----------cHHHhhHHHHhcccccceeeecccc-ccccCchHH----HHhhhhhhhcccCC-
Confidence             677788888888777          56666777665 6778888888754 477766654    34667888888774 


Q ss_pred             ccccccchhHHhhccccceeeeccccccchhcc--c-c----------------cccc---ccC-----------ccccc
Q 046857          165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH--L-E----------------ELNA---DKE-----------HIGPL  211 (439)
Q Consensus       165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~-~----------------~~~~---~~~-----------~~~~~  211 (439)
                      .++. .|.. ++++ +|+.|.+.+++- ..+..  + +                |...   ...           .+...
T Consensus       286 ~is~-Lp~s-Lgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~  361 (565)
T KOG0472|consen  286 DISS-LPYS-LGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI  361 (565)
T ss_pred             cccc-CCcc-cccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence            4554 4544 6777 777777776532 11100  0 0                0000   000           00000


Q ss_pred             ccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC------CccCcceeeeeccc
Q 046857          212 FPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP------QKLTLEEYFLLAHQ  285 (439)
Q Consensus       212 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L------~~~~l~~~~~~~~~  285 (439)
                       .+.+.|++++- .++.+|..+.....-.-...++++. +.+..+|     ..+..++++      +.+.+.. ++    
T Consensus       362 -i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elP-----k~L~~lkelvT~l~lsnn~isf-v~----  428 (565)
T KOG0472|consen  362 -ITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELP-----KRLVELKELVTDLVLSNNKISF-VP----  428 (565)
T ss_pred             -hhhhhhccccc-ccccCCHHHHHHhhhcceEEEeccc-chHhhhh-----hhhHHHHHHHHHHHhhcCcccc-ch----
Confidence             22333333321 1222221111000000122222222 1222221     112222222      2222222 11    


Q ss_pred             cccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccc
Q 046857          286 VQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINV  365 (439)
Q Consensus       286 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l  365 (439)
                           .....+++|..|++++. -+.+++.+..    .+..|+.|+++.+ .+..+|...+-...++.+-.++ ++++.+
T Consensus       429 -----~~l~~l~kLt~L~L~NN-~Ln~LP~e~~----~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~v  496 (565)
T KOG0472|consen  429 -----LELSQLQKLTFLDLSNN-LLNDLPEEMG----SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSV  496 (565)
T ss_pred             -----HHHHhhhcceeeecccc-hhhhcchhhh----hhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-cccccc
Confidence                 13456778888888874 4666666533    4556888888876 6667776666565665555554 678887


Q ss_pred             cChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCcc
Q 046857          366 LTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLT  421 (439)
Q Consensus       366 ~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~  421 (439)
                       +.+.++.+.+|.+||+.+. .+..++.        .++++.+|++|.+++.|--.
T Consensus       497 -d~~~l~nm~nL~tLDL~nN-dlq~IPp--------~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  497 -DPSGLKNMRNLTTLDLQNN-DLQQIPP--------ILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             -ChHHhhhhhhcceeccCCC-chhhCCh--------hhccccceeEEEecCCccCC
Confidence             6667788999999999876 7777775        78899999999999987553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.26  E-value=3.4e-11  Score=123.40  Aligned_cols=254  Identities=17%  Similarity=0.115  Sum_probs=152.3

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM  121 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~  121 (439)
                      .+-..|+++++ ++..+|..  +  .++|+.|++.++ +++.+|..   .++|++|++++|.          ++.+|.  
T Consensus       201 ~~~~~LdLs~~-~LtsLP~~--l--~~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~----------LtsLP~--  259 (788)
T PRK15387        201 NGNAVLNVGES-GLTTLPDC--L--PAHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQ----------LTSLPV--  259 (788)
T ss_pred             CCCcEEEcCCC-CCCcCCcc--h--hcCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCc----------cCcccC--
Confidence            34456666663 44444322  1  246788888773 56667643   5678888887733          333332  


Q ss_pred             cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857          122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL  201 (439)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  201 (439)
                       ..++|+.|++.++. +..++.       ...+|+.|++.++ +++. +|..    +++|+.|+++++ .+..++.    
T Consensus       260 -lp~sL~~L~Ls~N~-L~~Lp~-------lp~~L~~L~Ls~N-~Lt~-LP~~----p~~L~~LdLS~N-~L~~Lp~----  319 (788)
T PRK15387        260 -LPPGLLELSIFSNP-LTHLPA-------LPSGLCKLWIFGN-QLTS-LPVL----PPGLQELSVSDN-QLASLPA----  319 (788)
T ss_pred             -cccccceeeccCCc-hhhhhh-------chhhcCEEECcCC-cccc-cccc----ccccceeECCCC-ccccCCC----
Confidence             24567778777554 444322       2356778888775 4554 3432    467888888875 4444432    


Q ss_pred             ccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCccee
Q 046857          202 NADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEY  279 (439)
Q Consensus       202 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~  279 (439)
                               .+.+|+.|++.++ .++.++.      ..++|+.|++++ +.+..++..     ..+|+.|  +.+.+..+
T Consensus       320 ---------lp~~L~~L~Ls~N-~L~~LP~------lp~~Lq~LdLS~-N~Ls~LP~l-----p~~L~~L~Ls~N~L~~L  377 (788)
T PRK15387        320 ---------LPSELCKLWAYNN-QLTSLPT------LPSGLQELSVSD-NQLASLPTL-----PSELYKLWAYNNRLTSL  377 (788)
T ss_pred             ---------CcccccccccccC-ccccccc------cccccceEecCC-CccCCCCCC-----CcccceehhhccccccC
Confidence                     2256777777765 3444432      114788888887 455555421     2455555  44555543


Q ss_pred             eeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccC
Q 046857          280 FLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKC  359 (439)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  359 (439)
                      +.             .+++|+.|+++++ .++.++.       ..++|+.|+++++. ++.+|..   ..+|+.|++++ 
T Consensus       378 P~-------------l~~~L~~LdLs~N-~Lt~LP~-------l~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~-  431 (788)
T PRK15387        378 PA-------------LPSGLKELIVSGN-RLTSLPV-------LPSELKELMVSGNR-LTSLPML---PSGLLSLSVYR-  431 (788)
T ss_pred             cc-------------cccccceEEecCC-cccCCCC-------cccCCCEEEccCCc-CCCCCcc---hhhhhhhhhcc-
Confidence            21             2357888888775 3544431       24578888888874 6667643   34678888887 


Q ss_pred             CCcccccChhHHhhccccceEEEcccc
Q 046857          360 HGLINVLTLSASKNLVNLGRMKIVDCK  386 (439)
Q Consensus       360 ~~l~~l~p~~~~~~l~~L~~L~l~~c~  386 (439)
                      ++++.+ |.. +..+++|+.|++++++
T Consensus       432 NqLt~L-P~s-l~~L~~L~~LdLs~N~  456 (788)
T PRK15387        432 NQLTRL-PES-LIHLSSETTVNLEGNP  456 (788)
T ss_pred             Cccccc-ChH-HhhccCCCeEECCCCC
Confidence            457776 765 4578889999998874

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.23  E-value=1.5e-13  Score=125.99  Aligned_cols=167  Identities=17%  Similarity=0.185  Sum_probs=101.3

Q ss_pred             CCCCccEEeEecCCCcceeccccccccccCCCCC---CccCcceeeeeccccccccccccccCccceEeecCCCCceecc
Q 046857          238 EMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP---QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLW  314 (439)
Q Consensus       238 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L---~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  314 (439)
                      .++-+.++++..|..+++.....+...+..|+.|   +|.++.+.+.        +.-...-++|+.+.+..|..+++..
T Consensus       266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l--------~aLg~~~~~L~~l~l~~c~~fsd~~  337 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL--------WALGQHCHNLQVLELSGCQQFSDRG  337 (483)
T ss_pred             cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH--------HHHhcCCCceEEEeccccchhhhhh
Confidence            3444555555555555555444444455666666   4444433110        0001123688888888887766654


Q ss_pred             ccCCccccccCCcceEEeecCCCccc--ccCCCccCCCcceEEEccCCCcccccCh---hHHhhccccceEEEcccccch
Q 046857          315 KENDESNKVFANLERLEISECSKLQK--LVPPSWHLENLWGLQVSKCHGLINVLTL---SASKNLVNLGRMKIVDCKMME  389 (439)
Q Consensus       315 ~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~l~p~---~~~~~l~~L~~L~l~~c~~l~  389 (439)
                      ....  ..+.++|+.+++.+|-.+.+  +.....+++.|+++.+++|..+++....   +....+..|+.+.+++|+.++
T Consensus       338 ft~l--~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  338 FTML--GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             hhhh--hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence            4422  23678888888888766553  3344457888888888888777764111   112344678888888888776


Q ss_pred             hhccccccccCCCceEeccccEEecCCCCCcc
Q 046857          390 EIIQSQVGEETEDCIVFGKLRYLELDCLPSLT  421 (439)
Q Consensus       390 ~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~  421 (439)
                      +...+       ...++++|+++++..|.+.+
T Consensus       416 d~~Le-------~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  416 DATLE-------HLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             HHHHH-------HHhhCcccceeeeechhhhh
Confidence            66543       56677888888887776655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.22  E-value=1.1e-10  Score=119.74  Aligned_cols=257  Identities=19%  Similarity=0.152  Sum_probs=170.2

Q ss_pred             cCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcC
Q 046857           11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVS   90 (439)
Q Consensus        11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~   90 (439)
                      .-..|+++++ .+..+|..+          .++|+.|.+.+ .++..++.     ..++|++|++++| +++.+|..   
T Consensus       202 ~~~~LdLs~~-~LtsLP~~l----------~~~L~~L~L~~-N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~l---  260 (788)
T PRK15387        202 GNAVLNVGES-GLTTLPDCL----------PAHITTLVIPD-NNLTSLPA-----LPPELRTLEVSGN-QLTSLPVL---  260 (788)
T ss_pred             CCcEEEcCCC-CCCcCCcch----------hcCCCEEEccC-CcCCCCCC-----CCCCCcEEEecCC-ccCcccCc---
Confidence            3456788887 455676643          34889999988 44554432     3588999999985 77778753   


Q ss_pred             ccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccccc
Q 046857           91 TPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI  170 (439)
Q Consensus        91 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~  170 (439)
                      .++|++|++++          +.+..+|.   -..+|+.|+++++. ++.+|.       ..++|+.|+++++ .++. +
T Consensus       261 p~sL~~L~Ls~----------N~L~~Lp~---lp~~L~~L~Ls~N~-Lt~LP~-------~p~~L~~LdLS~N-~L~~-L  317 (788)
T PRK15387        261 PPGLLELSIFS----------NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN-QLAS-L  317 (788)
T ss_pred             ccccceeeccC----------Cchhhhhh---chhhcCEEECcCCc-cccccc-------cccccceeECCCC-cccc-C
Confidence            46888999888          33444554   23568888888664 555432       3478999999886 5554 3


Q ss_pred             chhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857          171 PANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       171 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                      |..    ..+|+.|.+.+| .+..++.             +..+|+.|+++++ .++.++..      .++|+.|++.+ 
T Consensus       318 p~l----p~~L~~L~Ls~N-~L~~LP~-------------lp~~Lq~LdLS~N-~Ls~LP~l------p~~L~~L~Ls~-  371 (788)
T PRK15387        318 PAL----PSELCKLWAYNN-QLTSLPT-------------LPSGLQELSVSDN-QLASLPTL------PSELYKLWAYN-  371 (788)
T ss_pred             CCC----cccccccccccC-ccccccc-------------cccccceEecCCC-ccCCCCCC------Ccccceehhhc-
Confidence            431    246778888765 4444432             2257889999885 56555432      25778887776 


Q ss_pred             CCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcc
Q 046857          251 PDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLE  328 (439)
Q Consensus       251 ~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~  328 (439)
                      +.+..++.     ...+|+.|  +.+.+..++.             .+++|+.|+++++ .+..++.       ...+|+
T Consensus       372 N~L~~LP~-----l~~~L~~LdLs~N~Lt~LP~-------------l~s~L~~LdLS~N-~LssIP~-------l~~~L~  425 (788)
T PRK15387        372 NRLTSLPA-----LPSGLKELIVSGNRLTSLPV-------------LPSELKELMVSGN-RLTSLPM-------LPSGLL  425 (788)
T ss_pred             cccccCcc-----cccccceEEecCCcccCCCC-------------cccCCCEEEccCC-cCCCCCc-------chhhhh
Confidence            34555432     23466766  5555655321             3468999999986 3555431       234788


Q ss_pred             eEEeecCCCcccccCCCccCCCcceEEEccCCCcccc
Q 046857          329 RLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINV  365 (439)
Q Consensus       329 ~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l  365 (439)
                      .|+++++ .++.+|..+..+++|+.|++++++ +...
T Consensus       426 ~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~-Ls~~  460 (788)
T PRK15387        426 SLSVYRN-QLTRLPESLIHLSSETTVNLEGNP-LSER  460 (788)
T ss_pred             hhhhccC-cccccChHHhhccCCCeEECCCCC-CCch
Confidence            8999875 577899988999999999999854 6554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.15  E-value=1.3e-10  Score=119.88  Aligned_cols=244  Identities=14%  Similarity=0.147  Sum_probs=130.2

Q ss_pred             CCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCC
Q 046857           68 PSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQAL  147 (439)
Q Consensus        68 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l  147 (439)
                      .+...|++.+. +++.+|..+.  ++|+.|++++          +.++.+|..+.  ++|+.|+++++. ++.++..   
T Consensus       178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~----------N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~---  238 (754)
T PRK15370        178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDN----------NELKSLPENLQ--GNIKTLYANSNQ-LTSIPAT---  238 (754)
T ss_pred             cCceEEEeCCC-CcCcCCcccc--cCCcEEEecC----------CCCCcCChhhc--cCCCEEECCCCc-cccCChh---
Confidence            34566777663 5666665442  4677777766          23333444332  467777777543 5444332   


Q ss_pred             CcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccc
Q 046857          148 PVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLK  227 (439)
Q Consensus       148 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  227 (439)
                         ..++|+.|++++|. +.. +|.. +.  .+|+.|++++ +.+..++.  .          ++++|+.|+++++ .++
T Consensus       239 ---l~~~L~~L~Ls~N~-L~~-LP~~-l~--s~L~~L~Ls~-N~L~~LP~--~----------l~~sL~~L~Ls~N-~Lt  296 (754)
T PRK15370        239 ---LPDTIQEMELSINR-ITE-LPER-LP--SALQSLDLFH-NKISCLPE--N----------LPEELRYLSVYDN-SIR  296 (754)
T ss_pred             ---hhccccEEECcCCc-cCc-CChh-Hh--CCCCEEECcC-CccCcccc--c----------cCCCCcEEECCCC-ccc
Confidence               23467777777753 443 4544 22  4677777774 35544432  0          1256777777765 454


Q ss_pred             ccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeec
Q 046857          228 RFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLS  305 (439)
Q Consensus       228 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  305 (439)
                      .++...     .++|+.|++.++ .+..++..    ..++|+.|  +.+.+..++            ...+++|+.|+++
T Consensus       297 ~LP~~l-----p~sL~~L~Ls~N-~Lt~LP~~----l~~sL~~L~Ls~N~Lt~LP------------~~l~~sL~~L~Ls  354 (754)
T PRK15370        297 TLPAHL-----PSGITHLNVQSN-SLTALPET----LPPGLKTLEAGENALTSLP------------ASLPPELQVLDVS  354 (754)
T ss_pred             cCcccc-----hhhHHHHHhcCC-ccccCCcc----ccccceeccccCCccccCC------------hhhcCcccEEECC
Confidence            443221     145666666663 34433211    12345554  333333321            1123577777777


Q ss_pred             CCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHH---hhccccceEEE
Q 046857          306 GLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSAS---KNLVNLGRMKI  382 (439)
Q Consensus       306 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~---~~l~~L~~L~l  382 (439)
                      ++ .+..++..      ..++|+.|++++| .+..+|..+.  ..|+.|+++++ +++.+ |..+.   ..++++..|++
T Consensus       355 ~N-~L~~LP~~------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~L-P~sl~~~~~~~~~l~~L~L  422 (754)
T PRK15370        355 KN-QITVLPET------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRL-PESLPHFRGEGPQPTRIIV  422 (754)
T ss_pred             CC-CCCcCChh------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccC-chhHHHHhhcCCCccEEEe
Confidence            75 34444332      3457777777776 4556665432  35777777763 46655 54332   23466777777


Q ss_pred             cccc
Q 046857          383 VDCK  386 (439)
Q Consensus       383 ~~c~  386 (439)
                      .+.+
T Consensus       423 ~~Np  426 (754)
T PRK15370        423 EYNP  426 (754)
T ss_pred             eCCC
Confidence            6653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.15  E-value=6e-12  Score=126.13  Aligned_cols=315  Identities=19%  Similarity=0.168  Sum_probs=189.2

Q ss_pred             eEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccC
Q 046857           14 NLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPK   93 (439)
Q Consensus        14 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~   93 (439)
                      ++++++| .++.+|.....        -..++.|++... .+-+.|. +.+.....|+.|++++ ..+..+|..+..+++
T Consensus         2 ~vd~s~~-~l~~ip~~i~~--------~~~~~~ln~~~N-~~l~~pl-~~~~~~v~L~~l~lsn-n~~~~fp~~it~l~~   69 (1081)
T KOG0618|consen    2 HVDASDE-QLELIPEQILN--------NEALQILNLRRN-SLLSRPL-EFVEKRVKLKSLDLSN-NQISSFPIQITLLSH   69 (1081)
T ss_pred             Ccccccc-cCcccchhhcc--------HHHHHhhhcccc-ccccCch-HHhhheeeeEEeeccc-cccccCCchhhhHHH
Confidence            3555665 36666655432        234777777772 1122221 2234455599999999 467788888888999


Q ss_pred             ccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchh
Q 046857           94 LHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPAN  173 (439)
Q Consensus        94 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~  173 (439)
                      |+.|.++.          +.++++|.......+|+.+.|. |..+..+|.+.    ..+.+|+.|+++.. ++.. +|..
T Consensus        70 L~~ln~s~----------n~i~~vp~s~~~~~~l~~lnL~-~n~l~~lP~~~----~~lknl~~LdlS~N-~f~~-~Pl~  132 (1081)
T KOG0618|consen   70 LRQLNLSR----------NYIRSVPSSCSNMRNLQYLNLK-NNRLQSLPASI----SELKNLQYLDLSFN-HFGP-IPLV  132 (1081)
T ss_pred             Hhhcccch----------hhHhhCchhhhhhhcchhheec-cchhhcCchhH----Hhhhcccccccchh-ccCC-Cchh
Confidence            99999988          7888888888888889999998 55566656554    46788888998885 3443 5665


Q ss_pred             HHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCcc-EEeEecCCC
Q 046857          174 LLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLW-SLTIENCPD  252 (439)
Q Consensus       174 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~-~L~l~~c~~  252 (439)
                       +-.+..++.+..+++..+..+..               ...+.+++........+.....      +++ .+++++. .
T Consensus       133 -i~~lt~~~~~~~s~N~~~~~lg~---------------~~ik~~~l~~n~l~~~~~~~i~------~l~~~ldLr~N-~  189 (1081)
T KOG0618|consen  133 -IEVLTAEEELAASNNEKIQRLGQ---------------TSIKKLDLRLNVLGGSFLIDIY------NLTHQLDLRYN-E  189 (1081)
T ss_pred             -HHhhhHHHHHhhhcchhhhhhcc---------------ccchhhhhhhhhcccchhcchh------hhheeeecccc-h
Confidence             66677777777776533322211               2244455544433333333332      233 3666663 2


Q ss_pred             cceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceE
Q 046857          253 METFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERL  330 (439)
Q Consensus       253 l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L  330 (439)
                      +...    .+..+..|+.+  .++.+..+..             ..++++.|..+.++-. .....     ....+|+++
T Consensus       190 ~~~~----dls~~~~l~~l~c~rn~ls~l~~-------------~g~~l~~L~a~~n~l~-~~~~~-----p~p~nl~~~  246 (1081)
T KOG0618|consen  190 MEVL----DLSNLANLEVLHCERNQLSELEI-------------SGPSLTALYADHNPLT-TLDVH-----PVPLNLQYL  246 (1081)
T ss_pred             hhhh----hhhhccchhhhhhhhcccceEEe-------------cCcchheeeeccCcce-eeccc-----cccccceee
Confidence            2211    13456677777  4444544322             4567777777776543 22212     033477777


Q ss_pred             EeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEecccc
Q 046857          331 EISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLR  410 (439)
Q Consensus       331 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~  410 (439)
                      +++.. .++.+|..+..+.+|+.+.+.. +++..+ |..+ ....+|+.|++.+| .++.++.        ....++.|+
T Consensus       247 dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~l-p~ri-~~~~~L~~l~~~~n-el~yip~--------~le~~~sL~  313 (1081)
T KOG0618|consen  247 DISHN-NLSNLPEWIGACANLEALNANH-NRLVAL-PLRI-SRITSLVSLSAAYN-ELEYIPP--------FLEGLKSLR  313 (1081)
T ss_pred             ecchh-hhhcchHHHHhcccceEecccc-hhHHhh-HHHH-hhhhhHHHHHhhhh-hhhhCCC--------cccccceee
Confidence            77663 5667777777788888887776 445554 5533 35567777777666 6665554        233355566


Q ss_pred             EEecCC
Q 046857          411 YLELDC  416 (439)
Q Consensus       411 ~l~l~~  416 (439)
                      +|+++.
T Consensus       314 tLdL~~  319 (1081)
T KOG0618|consen  314 TLDLQS  319 (1081)
T ss_pred             eeeehh
Confidence            666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.15  E-value=7.2e-12  Score=125.57  Aligned_cols=266  Identities=18%  Similarity=0.149  Sum_probs=152.1

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE  120 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~  120 (439)
                      -++++.|..+.++-.....    ...-.+|++++++. .++..+|+-++.+.+|+.+++..          +.+..+|..
T Consensus       218 g~~l~~L~a~~n~l~~~~~----~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~----------N~l~~lp~r  282 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDV----HPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANH----------NRLVALPLR  282 (1081)
T ss_pred             CcchheeeeccCcceeecc----ccccccceeeecch-hhhhcchHHHHhcccceEecccc----------hhHHhhHHH
Confidence            3566666666644332221    11245688888887 46777787777888888888777          556777777


Q ss_pred             hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccc-cceeeeccccccchhcccc
Q 046857          121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNN-LARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~  199 (439)
                      +....+|+.|....+. ++.++...    +.+..|++|++... ++.. +|..++.-+.. |+.|..+ ++.+...+..+
T Consensus       283 i~~~~~L~~l~~~~ne-l~yip~~l----e~~~sL~tLdL~~N-~L~~-lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~  354 (1081)
T KOG0618|consen  283 ISRITSLVSLSAAYNE-LEYIPPFL----EGLKSLRTLDLQSN-NLPS-LPDNFLAVLNASLNTLNVS-SNKLSTLPSYE  354 (1081)
T ss_pred             HhhhhhHHHHHhhhhh-hhhCCCcc----cccceeeeeeehhc-cccc-cchHHHhhhhHHHHHHhhh-hcccccccccc
Confidence            7777888888777443 66655443    45788888988774 5554 56665554443 6666666 34555554333


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcc
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLE  277 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~  277 (439)
                      +-         .++.|+.|.+.+..--.....   ...++++|+.|.+.+ +.+..+ |.+....+..|++|  +.+.++
T Consensus       355 e~---------~~~~Lq~LylanN~Ltd~c~p---~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  355 EN---------NHAALQELYLANNHLTDSCFP---VLVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             ch---------hhHHHHHHHHhcCcccccchh---hhccccceeeeeecc-cccccC-CHHHHhchHHhHHHhcccchhh
Confidence            22         126777777776532222211   123667788888877 344444 33333455666665  666665


Q ss_pred             eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccccc-CCCccCCCcceEEE
Q 046857          278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLV-PPSWHLENLWGLQV  356 (439)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l  356 (439)
                      .++.          ....+++|+.|.... +.+..++  ++.   .+|+|+.+|++.+ .++.+. .....-++|++|++
T Consensus       421 ~Lp~----------tva~~~~L~tL~ahs-N~l~~fP--e~~---~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdl  483 (1081)
T KOG0618|consen  421 TLPD----------TVANLGRLHTLRAHS-NQLLSFP--ELA---QLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDL  483 (1081)
T ss_pred             hhhH----------HHHhhhhhHHHhhcC-Cceeech--hhh---hcCcceEEecccc-hhhhhhhhhhCCCcccceeec
Confidence            5432          234555666665544 2344444  122   5666777776443 333221 11112267777777


Q ss_pred             ccCC
Q 046857          357 SKCH  360 (439)
Q Consensus       357 ~~c~  360 (439)
                      ++..
T Consensus       484 SGN~  487 (1081)
T KOG0618|consen  484 SGNT  487 (1081)
T ss_pred             cCCc
Confidence            7654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.12  E-value=8.5e-11  Score=122.98  Aligned_cols=182  Identities=16%  Similarity=0.161  Sum_probs=117.3

Q ss_pred             cccccceeecccccc-ccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857           40 AFSNLKVLILDYLPR-LTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY  118 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  118 (439)
                      ..++|++|-+.+-.. +...+. ..+..+|.|+.|++++|..+..+|..++.+-+||+|++++          +.++.+|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~----------t~I~~LP  611 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD----------TGISHLP  611 (889)
T ss_pred             CCCccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC----------CCccccc
Confidence            356899988888321 222211 1155699999999999999999999999999999999999          7888999


Q ss_pred             hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc-ccccccchhHHhhccccceeeeccccccchhcc
Q 046857          119 EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT-NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH  197 (439)
Q Consensus       119 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  197 (439)
                      .++..++.|.+|++..+..+..++...    ..+++|++|.+..-. ..+. .-...+..+++|+.+.+..+.. ..+..
T Consensus       612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~----~~L~~Lr~L~l~~s~~~~~~-~~l~el~~Le~L~~ls~~~~s~-~~~e~  685 (889)
T KOG4658|consen  612 SGLGNLKKLIYLNLEVTGRLESIPGIL----LELQSLRVLRLPRSALSNDK-LLLKELENLEHLENLSITISSV-LLLED  685 (889)
T ss_pred             hHHHHHHhhheeccccccccccccchh----hhcccccEEEeeccccccch-hhHHhhhcccchhhheeecchh-HhHhh
Confidence            999999999999999877666553222    358999999997653 2221 1222244555555555543322 11111


Q ss_pred             ccccccccCcccccccccc----eEecCCcccccccccCCCcccCCCCccEEeEecCCCc
Q 046857          198 LEELNADKEHIGPLFPRLF----SLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDM  253 (439)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l  253 (439)
                      +.+          . ++|.    .+.+.++ ........   ...+++|+.|.+.+|...
T Consensus       686 l~~----------~-~~L~~~~~~l~~~~~-~~~~~~~~---~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  686 LLG----------M-TRLRSLLQSLSIEGC-SKRTLISS---LGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hhh----------h-HHHHHHhHhhhhccc-ccceeecc---cccccCcceEEEEcCCCc
Confidence            111          1 2332    3333232 22222222   237789999999998654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.05  E-value=5.1e-10  Score=115.42  Aligned_cols=224  Identities=18%  Similarity=0.169  Sum_probs=114.3

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM  121 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~  121 (439)
                      ++|+.|++++ .+++.++..    .+++|++|++++| .++.+|..+  .++|+.|++++|.          +..+|..+
T Consensus       199 ~~L~~L~Ls~-N~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls~N~----------L~~LP~~l  260 (754)
T PRK15370        199 EQITTLILDN-NELKSLPEN----LQGNIKTLYANSN-QLTSIPATL--PDTIQEMELSINR----------ITELPERL  260 (754)
T ss_pred             cCCcEEEecC-CCCCcCChh----hccCCCEEECCCC-ccccCChhh--hccccEEECcCCc----------cCcCChhH
Confidence            3566666666 233433221    2346666766664 455565443  2356666666632          22333332


Q ss_pred             cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857          122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL  201 (439)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  201 (439)
                      .  .+|+.|+++++ .+..++..      .+++|+.|++++| +++. +|.. +  .++|+.|++++| .+..++..   
T Consensus       261 ~--s~L~~L~Ls~N-~L~~LP~~------l~~sL~~L~Ls~N-~Lt~-LP~~-l--p~sL~~L~Ls~N-~Lt~LP~~---  322 (754)
T PRK15370        261 P--SALQSLDLFHN-KISCLPEN------LPEELRYLSVYDN-SIRT-LPAH-L--PSGITHLNVQSN-SLTALPET---  322 (754)
T ss_pred             h--CCCCEEECcCC-ccCccccc------cCCCCcEEECCCC-cccc-Cccc-c--hhhHHHHHhcCC-ccccCCcc---
Confidence            2  35666666633 34443322      2345666666664 3443 3332 1  134566666653 33322210   


Q ss_pred             ccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeee
Q 046857          202 NADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFL  281 (439)
Q Consensus       202 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~  281 (439)
                               .+++|+.|++.++ .+..++...     +++|+.|++.++ .+..++                        
T Consensus       323 ---------l~~sL~~L~Ls~N-~Lt~LP~~l-----~~sL~~L~Ls~N-~L~~LP------------------------  362 (754)
T PRK15370        323 ---------LPPGLKTLEAGEN-ALTSLPASL-----PPELQVLDVSKN-QITVLP------------------------  362 (754)
T ss_pred             ---------ccccceeccccCC-ccccCChhh-----cCcccEEECCCC-CCCcCC------------------------
Confidence                     1256666666665 244343211     246666666654 232221                        


Q ss_pred             eccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCc----cCCCcceEEEc
Q 046857          282 LAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSW----HLENLWGLQVS  357 (439)
Q Consensus       282 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----~l~~L~~L~l~  357 (439)
                                 ...+++|+.|+++++ .+..++..      ..++|+.|+++++ .+..+|..+.    .++++..+++.
T Consensus       363 -----------~~lp~~L~~LdLs~N-~Lt~LP~~------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~  423 (754)
T PRK15370        363 -----------ETLPPTITTLDVSRN-ALTNLPEN------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVE  423 (754)
T ss_pred             -----------hhhcCCcCEEECCCC-cCCCCCHh------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEee
Confidence                       123457888888875 45555433      2346788888775 4556665433    35777888887


Q ss_pred             cCC
Q 046857          358 KCH  360 (439)
Q Consensus       358 ~c~  360 (439)
                      +.+
T Consensus       424 ~Np  426 (754)
T PRK15370        424 YNP  426 (754)
T ss_pred             CCC
Confidence            743

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.04  E-value=1e-11  Score=100.81  Aligned_cols=162  Identities=14%  Similarity=0.157  Sum_probs=120.1

Q ss_pred             CCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccc
Q 046857            4 GSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT   83 (439)
Q Consensus         4 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~   83 (439)
                      +-+-++.+++.|.|+.++ +..+++.+.        .+.+|++|++.+ ..+++++..  ++.++.|+.|++.- .++..
T Consensus        27 ~gLf~~s~ITrLtLSHNK-l~~vppnia--------~l~nlevln~~n-nqie~lp~~--issl~klr~lnvgm-nrl~~   93 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNK-LTVVPPNIA--------ELKNLEVLNLSN-NQIEELPTS--ISSLPKLRILNVGM-NRLNI   93 (264)
T ss_pred             ccccchhhhhhhhcccCc-eeecCCcHH--------Hhhhhhhhhccc-chhhhcChh--hhhchhhhheecch-hhhhc
Confidence            344567778899999986 666776665        367999999998 455555543  78899999999987 57888


Q ss_pred             cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857           84 FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC  163 (439)
Q Consensus        84 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~  163 (439)
                      +|.+++.+|.|+.|++.++.+        +-..+|..+..+..|+.|+++++. .+.+|.+.    +.+++|+.|.+...
T Consensus        94 lprgfgs~p~levldltynnl--------~e~~lpgnff~m~tlralyl~dnd-fe~lp~dv----g~lt~lqil~lrdn  160 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNL--------NENSLPGNFFYMTTLRALYLGDND-FEILPPDV----GKLTNLQILSLRDN  160 (264)
T ss_pred             CccccCCCchhhhhhcccccc--------ccccCCcchhHHHHHHHHHhcCCC-cccCChhh----hhhcceeEEeeccC
Confidence            999999999999999988432        223345555556778888888655 55555544    67899999999886


Q ss_pred             cccccccchhHHhhccccceeeeccccccchh
Q 046857          164 TNMSSAIPANLLRCLNNLARLEVRNCDSLEEM  195 (439)
Q Consensus       164 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  195 (439)
                      .-++  .|.. ++.+.+|++|.|.++ .+..+
T Consensus       161 dll~--lpke-ig~lt~lrelhiqgn-rl~vl  188 (264)
T KOG0617|consen  161 DLLS--LPKE-IGDLTRLRELHIQGN-RLTVL  188 (264)
T ss_pred             chhh--CcHH-HHHHHHHHHHhcccc-eeeec
Confidence            5554  6776 888999999999975 55444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.85  E-value=1.1e-09  Score=114.71  Aligned_cols=84  Identities=19%  Similarity=0.148  Sum_probs=56.3

Q ss_pred             ccccCceEEEccccc-cceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc
Q 046857            8 IPNSLVNLNVSYCEK-IEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ   86 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~   86 (439)
                      .++.|+.|-+.++.. +..++..+       +..+|.|++||++++..+.++|..  ++.+-+||+|++++ ..++.+|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~f-------f~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~-t~I~~LP~  612 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEF-------FRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSD-TGISHLPS  612 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHH-------HhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccC-CCccccch
Confidence            455677777777653 23222221       225778888888877777767644  67778888888877 35777788


Q ss_pred             CCcCccCccceeecC
Q 046857           87 GIVSTPKLHEVQEEG  101 (439)
Q Consensus        87 ~~~~l~~L~~L~l~~  101 (439)
                      +++.+.+|.+|+++.
T Consensus       613 ~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  613 GLGNLKKLIYLNLEV  627 (889)
T ss_pred             HHHHHHhhheecccc
Confidence            777777888877766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.71  E-value=2.4e-09  Score=101.35  Aligned_cols=119  Identities=16%  Similarity=0.090  Sum_probs=54.2

Q ss_pred             CCCCccEEeeccCCC----ccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee
Q 046857           66 EFPSLERVSMTRCPN----MKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI  141 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~----l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i  141 (439)
                      .+++|+.+++.+|..    ...++..+...++|++++++++....   .......++..+..+++|+.|+++++......
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR---IPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC---cchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            344566666666531    11234444455556666665533221   01223334444445667777777765532211


Q ss_pred             cCCC-CCCcCccCCccEEEeccccccccccch---hHHhhc-cccceeeecccc
Q 046857          142 WHGQ-ALPVRFFNYLAELEVDYCTNMSSAIPA---NLLRCL-NNLARLEVRNCD  190 (439)
Q Consensus       142 ~~~~-~l~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l-~~L~~L~l~~~~  190 (439)
                      +... .+. .. ++|++|++++|. +++....   ..+..+ ++|++|++++|.
T Consensus        98 ~~~~~~l~-~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          98 CGVLESLL-RS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HHHHHHHh-cc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            1100 011 12 447777776653 3311111   113334 666777777664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.69  E-value=9.6e-10  Score=89.44  Aligned_cols=106  Identities=15%  Similarity=0.295  Sum_probs=46.4

Q ss_pred             CCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCC
Q 046857           66 EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQ  145 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~  145 (439)
                      .+.+.+.|.+++ .++..+|..++.+.+|+.|++.+          +.+.++|.++..+++|+.|++. .+.+..+|.+.
T Consensus        31 ~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n----------nqie~lp~~issl~klr~lnvg-mnrl~~lprgf   98 (264)
T KOG0617|consen   31 NMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN----------NQIEELPTSISSLPKLRILNVG-MNRLNILPRGF   98 (264)
T ss_pred             chhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc----------chhhhcChhhhhchhhhheecc-hhhhhcCcccc
Confidence            344444444544 24444455555555555554444          3444444444444444444444 22233333332


Q ss_pred             CCCcCccCCccEEEeccccccccccchhHHhhccccceeeecc
Q 046857          146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRN  188 (439)
Q Consensus       146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~  188 (439)
                          +.+|.|+.|++.+.+--....|-. +-.+..|+-|.+++
T Consensus        99 ----gs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~d  136 (264)
T KOG0617|consen   99 ----GSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGD  136 (264)
T ss_pred             ----CCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcC
Confidence                344445555544432222223333 22344555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=8.2e-09  Score=91.32  Aligned_cols=187  Identities=17%  Similarity=0.136  Sum_probs=117.5

Q ss_pred             ccceeeccccccccccccccCccCCCCccEEeeccCCCcc-ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857           43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK-TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM  121 (439)
Q Consensus        43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~  121 (439)
                      .|++||++. +.++.-.....+..+..|+.|.+.+. ++. .+-..+++-.+|+.|+++.|.-...    +..+-+   +
T Consensus       186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~----n~~~ll---~  256 (419)
T KOG2120|consen  186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTE----NALQLL---L  256 (419)
T ss_pred             hhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccch----hHHHHH---H
Confidence            577777777 22211111122445777888888774 343 3555667778888888887431111    222223   3


Q ss_pred             cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc-cccccchhHHhhccccceeeeccccccchhccccc
Q 046857          122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN-MSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEE  200 (439)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  200 (439)
                      .+++.|.+|+++||.-.++.-... + .+-.++|+.|++++|.+ +.........+.+++|.+||+++|..++.- .+..
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~-V-~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~  333 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVA-V-AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQE  333 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHH-H-hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHH
Confidence            378999999999998665542111 1 13568899999999853 332223334678999999999999887641 1111


Q ss_pred             cccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCC
Q 046857          201 LNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (439)
Q Consensus       201 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  251 (439)
                      +..        |+.|++|.++.|..+..-  ........|+|.+|++.+|-
T Consensus       334 ~~k--------f~~L~~lSlsRCY~i~p~--~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  334 FFK--------FNYLQHLSLSRCYDIIPE--TLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHh--------cchheeeehhhhcCCChH--HeeeeccCcceEEEEecccc
Confidence            111        489999999999876321  11122467999999999873

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.42  E-value=1.4e-07  Score=89.30  Aligned_cols=223  Identities=16%  Similarity=0.116  Sum_probs=127.7

Q ss_pred             CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCC---CCccEEeeccCCCcc
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEF---PSLERVSMTRCPNMK   82 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l---~~L~~L~l~~c~~l~   82 (439)
                      +...++|++|+++++..-. .+..... .......+++|+.|+++++.-.....  ..+..+   ++|++|++++|..-.
T Consensus        47 l~~~~~l~~l~l~~~~~~~-~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          47 LRPQPSLKELCLSLNETGR-IPRGLQS-LLQGLTKGCGLQELDLSDNALGPDGC--GVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             HhhCCCceEEeccccccCC-cchHHHH-HHHHHHhcCceeEEEccCCCCChhHH--HHHHHHhccCcccEEEeeCCccch
Confidence            3456789999999875331 1110000 00011136799999999954321111  112223   459999999975321


Q ss_pred             ----ccccCCcCc-cCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCC--cCccCCc
Q 046857           83 ----TFSQGIVST-PKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALP--VRFFNYL  155 (439)
Q Consensus        83 ----~l~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~--~~~~~~L  155 (439)
                          .+...+..+ ++|+.|++++|.+...     ....+...+..+++|++|+++++. +....... ++  ...+++|
T Consensus       123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-l~~~l~~~~~L  195 (319)
T cd00116         123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGA-----SCEALAKALRANRDLKELNLANNG-IGDAGIRA-LAEGLKANCNL  195 (319)
T ss_pred             HHHHHHHHHHHhCCCCceEEEcCCCcCCch-----HHHHHHHHHHhCCCcCEEECcCCC-CchHHHHH-HHHHHHhCCCC
Confidence                233445566 8999999999765531     223344555567899999999765 33110000 11  0134699


Q ss_pred             cEEEeccccccccccch---hHHhhccccceeeeccccccch--hccccccccccCcccccccccceEecCCcccc----
Q 046857          156 AELEVDYCTNMSSAIPA---NLLRCLNNLARLEVRNCDSLEE--MLHLEELNADKEHIGPLFPRLFSLTLIDLPKL----  226 (439)
Q Consensus       156 ~~L~l~~~~~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----  226 (439)
                      +.|++++|. +++....   ..+..+++|++|++++|. +..  +..+..      ....-.++|++|++.+|.--    
T Consensus       196 ~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~------~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         196 EVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALAS------ALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             CEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHH------HHhccCCCceEEEccCCCCCcHHH
Confidence            999999874 4322221   125567889999999874 332  111100      00001279999999998421    


Q ss_pred             cccccCCCcccCCCCccEEeEecC
Q 046857          227 KRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       227 ~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                      ..+..   ....+++|+.+++.++
T Consensus       268 ~~l~~---~~~~~~~L~~l~l~~N  288 (319)
T cd00116         268 KDLAE---VLAEKESLLELDLRGN  288 (319)
T ss_pred             HHHHH---HHhcCCCccEEECCCC
Confidence            11211   1235589999999985

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=4.3e-08  Score=91.21  Aligned_cols=214  Identities=13%  Similarity=0.157  Sum_probs=120.7

Q ss_pred             CccccCceEEEccccccceeccccccccccccccccccceeecccc--ccccccccccCccCCCCccEEeeccCCCcccc
Q 046857            7 GIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYL--PRLTSFCLENYTLEFPSLERVSMTRCPNMKTF   84 (439)
Q Consensus         7 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l   84 (439)
                      +++..|+...|++|. ++..+.. +     ....+++++.|+++.-  .+|..+.  ..+..+|+|+.|+++.+ ++...
T Consensus       118 sn~kkL~~IsLdn~~-V~~~~~~-~-----~~k~~~~v~~LdLS~NL~~nw~~v~--~i~eqLp~Le~LNls~N-rl~~~  187 (505)
T KOG3207|consen  118 SNLKKLREISLDNYR-VEDAGIE-E-----YSKILPNVRDLDLSRNLFHNWFPVL--KIAEQLPSLENLNLSSN-RLSNF  187 (505)
T ss_pred             hhHHhhhheeecCcc-ccccchh-h-----hhhhCCcceeecchhhhHHhHHHHH--HHHHhcccchhcccccc-cccCC
Confidence            356677888888775 4433321 1     1225889999998872  1222221  22567899999999885 34322


Q ss_pred             cc--CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecc
Q 046857           85 SQ--GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDY  162 (439)
Q Consensus        85 ~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~  162 (439)
                      -.  .-..++.|+.|.++.|++.|.+-        -.-...+++|+.|++..+..+..-.    .+...+..|+.|++++
T Consensus       188 ~~s~~~~~l~~lK~L~l~~CGls~k~V--------~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~LdLs~  255 (505)
T KOG3207|consen  188 ISSNTTLLLSHLKQLVLNSCGLSWKDV--------QWILLTFPSLEVLYLEANEIILIKA----TSTKILQTLQELDLSN  255 (505)
T ss_pred             ccccchhhhhhhheEEeccCCCCHHHH--------HHHHHhCCcHHHhhhhcccccceec----chhhhhhHHhhccccC
Confidence            11  12347788888888888776542        1223358888888888764222111    1113567788888888


Q ss_pred             ccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCc
Q 046857          163 CTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPML  242 (439)
Q Consensus       163 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L  242 (439)
                      .+.++. .-....+.++.|+.|.++.| .+.++...   +.........|++|+.|++...+ +..+..-. .....++|
T Consensus       256 N~li~~-~~~~~~~~l~~L~~Lnls~t-gi~si~~~---d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~-~l~~l~nl  328 (505)
T KOG3207|consen  256 NNLIDF-DQGYKVGTLPGLNQLNLSST-GIASIAEP---DVESLDKTHTFPKLEYLNISENN-IRDWRSLN-HLRTLENL  328 (505)
T ss_pred             Cccccc-ccccccccccchhhhhcccc-CcchhcCC---CccchhhhcccccceeeecccCc-cccccccc-hhhccchh
Confidence            765542 11233667888888888865 44433221   11112223346888888877652 33322111 22344566


Q ss_pred             cEEeEec
Q 046857          243 WSLTIEN  249 (439)
Q Consensus       243 ~~L~l~~  249 (439)
                      +.+.+..
T Consensus       329 k~l~~~~  335 (505)
T KOG3207|consen  329 KHLRITL  335 (505)
T ss_pred             hhhhccc
Confidence            6665544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.6e-07  Score=87.50  Aligned_cols=161  Identities=14%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             cCCCCccEEeeccCCCcccccc--CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeec
Q 046857           65 LEFPSLERVSMTRCPNMKTFSQ--GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIW  142 (439)
Q Consensus        65 ~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~  142 (439)
                      .++.+|+++.+.+|+ +...+.  ....+++.++|+++.+-.       .....+-+-...+++|+.|+++.+. +...|
T Consensus       118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~-------~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~  188 (505)
T KOG3207|consen  118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLF-------HNWFPVLKIAEQLPSLENLNLSSNR-LSNFI  188 (505)
T ss_pred             hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhH-------HhHHHHHHHHHhcccchhccccccc-ccCCc
Confidence            357889999999964 554442  455699999999998321       1112233334578999999998554 44333


Q ss_pred             CCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccc-hhccccccccccCcccccccccceEecC
Q 046857          143 HGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLE-EMLHLEELNADKEHIGPLFPRLFSLTLI  221 (439)
Q Consensus       143 ~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~  221 (439)
                      ... .. ..+++|+.|.++.|+ ++...-.+.+..+++|+.|.++++..+. .....+           .+..|+.|+|+
T Consensus       189 ~s~-~~-~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-----------i~~~L~~LdLs  254 (505)
T KOG3207|consen  189 SSN-TT-LLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-----------ILQTLQELDLS  254 (505)
T ss_pred             ccc-ch-hhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-----------hhhHHhhcccc
Confidence            332 22 368899999999995 4433445567788999999999875321 111111           24789999999


Q ss_pred             CcccccccccCCCcccCCCCccEEeEecC
Q 046857          222 DLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       222 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                      +...+ ++.... .+..+|.|..+.+..|
T Consensus       255 ~N~li-~~~~~~-~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  255 NNNLI-DFDQGY-KVGTLPGLNQLNLSST  281 (505)
T ss_pred             CCccc-cccccc-ccccccchhhhhcccc
Confidence            87433 333222 2347788888888875

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.38  E-value=1.2e-08  Score=93.55  Aligned_cols=268  Identities=15%  Similarity=0.148  Sum_probs=136.2

Q ss_pred             CccEEeeccCCCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCC
Q 046857           69 SLERVSMTRCPNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQAL  147 (439)
Q Consensus        69 ~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l  147 (439)
                      .-.++++.. ++++.+|.+ +..+++|+.|+++.|.++...         |..+.++++|.+|-+.+++.+++++.+.  
T Consensus        68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~---------p~AF~GL~~l~~Lvlyg~NkI~~l~k~~--  135 (498)
T KOG4237|consen   68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIA---------PDAFKGLASLLSLVLYGNNKITDLPKGA--  135 (498)
T ss_pred             cceEEEecc-CCcccCChhhccchhhhceecccccchhhcC---------hHhhhhhHhhhHHHhhcCCchhhhhhhH--
Confidence            345566666 466666654 455777777777773322211         2344566677777777666677766554  


Q ss_pred             CcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccc-
Q 046857          148 PVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKL-  226 (439)
Q Consensus       148 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-  226 (439)
                       ++.+..|+.|.+..+ ++.. +....+..+++|..|.+.++ .++.+..        ..+..+ ..++.+.+...+.+ 
T Consensus       136 -F~gL~slqrLllNan-~i~C-ir~~al~dL~~l~lLslyDn-~~q~i~~--------~tf~~l-~~i~tlhlA~np~ic  202 (498)
T KOG4237|consen  136 -FGGLSSLQRLLLNAN-HINC-IRQDALRDLPSLSLLSLYDN-KIQSICK--------GTFQGL-AAIKTLHLAQNPFIC  202 (498)
T ss_pred             -hhhHHHHHHHhcChh-hhcc-hhHHHHHHhhhcchhcccch-hhhhhcc--------ccccch-hccchHhhhcCcccc
Confidence             234556666666554 4444 35555777777777777664 3332211        001112 34444444332211 


Q ss_pred             -------ccc----ccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC------CccCcceeeeeccccccc
Q 046857          227 -------KRF----CNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP------QKLTLEEYFLLAHQVQPL  289 (439)
Q Consensus       227 -------~~~----~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L------~~~~l~~~~~~~~~~~~~  289 (439)
                             ..+    +...   ...+......+.. ..+..+....+   ...++.+      .|. +..+-        .
T Consensus       203 dCnL~wla~~~a~~~iet---sgarc~~p~rl~~-~Ri~q~~a~kf---~c~~esl~s~~~~~d~-~d~~c--------P  266 (498)
T KOG4237|consen  203 DCNLPWLADDLAMNPIET---SGARCVSPYRLYY-KRINQEDARKF---LCSLESLPSRLSSEDF-PDSIC--------P  266 (498)
T ss_pred             ccccchhhhHHhhchhhc---ccceecchHHHHH-HHhcccchhhh---hhhHHhHHHhhccccC-cCCcC--------h
Confidence                   000    0000   0111111111111 01111111111   1112222      111 11100        0


Q ss_pred             cccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEEccCCCcccccCh
Q 046857          290 FDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQVSKCHGLINVLTL  368 (439)
Q Consensus       290 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~p~  368 (439)
                      ......+++|+.+++++. .++.+...-+.   ....+++|.+..+ ++..+...+ ..+..|+.|++++ ++++.+.|.
T Consensus       267 ~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe---~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~  340 (498)
T KOG4237|consen  267 AKCFKKLPNLRKLNLSNN-KITRIEDGAFE---GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPG  340 (498)
T ss_pred             HHHHhhcccceEeccCCC-ccchhhhhhhc---chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEecc
Confidence            012456789999999884 56666544343   5668888888765 455444433 3788999999998 568887454


Q ss_pred             hHHhhccccceEEEcc
Q 046857          369 SASKNLVNLGRMKIVD  384 (439)
Q Consensus       369 ~~~~~l~~L~~L~l~~  384 (439)
                       .+..+.+|.+|.+..
T Consensus       341 -aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  341 -AFQTLFSLSTLNLLS  355 (498)
T ss_pred             -cccccceeeeeehcc
Confidence             456777888887744

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.7e-08  Score=88.12  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=19.8

Q ss_pred             ccCCcceEEeecCCCcc-cccCCCccCCCcceEEEccC
Q 046857          323 VFANLERLEISECSKLQ-KLVPPSWHLENLWGLQVSKC  359 (439)
Q Consensus       323 ~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c  359 (439)
                      .|+.|++|.++.|+-+. ...-.+...|+|.+|++.+|
T Consensus       336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            45566666666665332 11122345667777777665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.18  E-value=2.6e-06  Score=72.04  Aligned_cols=129  Identities=16%  Similarity=0.164  Sum_probs=39.5

Q ss_pred             ccccceeeccccccccccccccCcc-CCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTL-EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      ..+++.|++.+    +.++....++ .+.+|+.|++++| .++.+ +++..+++|++|++++|.          ++.+..
T Consensus        18 ~~~~~~L~L~~----n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l-~~l~~L~~L~~L~L~~N~----------I~~i~~   81 (175)
T PF14580_consen   18 PVKLRELNLRG----NQISTIENLGATLDKLEVLDLSNN-QITKL-EGLPGLPRLKTLDLSNNR----------ISSISE   81 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS---S---TT----TT--EEE--SS-------------S-CH
T ss_pred             ccccccccccc----cccccccchhhhhcCCCEEECCCC-CCccc-cCccChhhhhhcccCCCC----------CCcccc
Confidence            34677788877    3333323333 4677888888885 56655 356677888888887733          333322


Q ss_pred             hh-cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccccc-chhHHhhccccceeeecc
Q 046857          120 EM-IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI-PANLLRCLNNLARLEVRN  188 (439)
Q Consensus       120 ~~-~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~  188 (439)
                      .+ ..+++|++|+++++. +.++.. . -+...+++|+.|++.+++-..... -..++..+|+|+.||-..
T Consensus        82 ~l~~~lp~L~~L~L~~N~-I~~l~~-l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNK-ISDLNE-L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHHHH-TT--EEE-TTS----SCCC-C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             chHHhCCcCCEEECcCCc-CCChHH-h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            22 146778888887543 443221 1 111357778888887764322111 112455667777776553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.07  E-value=1.4e-07  Score=86.84  Aligned_cols=283  Identities=16%  Similarity=0.141  Sum_probs=143.1

Q ss_pred             CCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccE
Q 046857           79 PNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAE  157 (439)
Q Consensus        79 ~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~  157 (439)
                      ..++++|..+.  +.-..++++.          +.++.+|.+ +..+++|++|+++++ .++.|..+.   +..+++|.+
T Consensus        56 ~GL~eVP~~LP--~~tveirLdq----------N~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~A---F~GL~~l~~  119 (498)
T KOG4237|consen   56 KGLTEVPANLP--PETVEIRLDQ----------NQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDA---FKGLASLLS  119 (498)
T ss_pred             CCcccCcccCC--CcceEEEecc----------CCcccCChhhccchhhhceeccccc-chhhcChHh---hhhhHhhhH
Confidence            45667776542  2445555555          556666655 557788888888844 366654332   134666777


Q ss_pred             EEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCccc
Q 046857          158 LEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNII  237 (439)
Q Consensus       158 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  237 (439)
                      |.+.+.+++++ +|...+.++..|+.|.+--+ .+..+.. +.       ...+ ++|..|.+... .++.++....  .
T Consensus       120 Lvlyg~NkI~~-l~k~~F~gL~slqrLllNan-~i~Cir~-~a-------l~dL-~~l~lLslyDn-~~q~i~~~tf--~  185 (498)
T KOG4237|consen  120 LVLYGNNKITD-LPKGAFGGLSSLQRLLLNAN-HINCIRQ-DA-------LRDL-PSLSLLSLYDN-KIQSICKGTF--Q  185 (498)
T ss_pred             HHhhcCCchhh-hhhhHhhhHHHHHHHhcChh-hhcchhH-HH-------HHHh-hhcchhcccch-hhhhhccccc--c
Confidence            77777667776 57777888888887776643 2222211 00       0112 55555555443 2333332111  2


Q ss_pred             CCCCccEEeEecCCCcceeccccccccccCCCCC-Ccc-Ccceeeeeccccc-c---------ccccccccCccceE---
Q 046857          238 EMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP-QKL-TLEEYFLLAHQVQ-P---------LFDEKVAFPQLRKL---  302 (439)
Q Consensus       238 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L-~~~-~l~~~~~~~~~~~-~---------~~~~~~~~~~L~~L---  302 (439)
                      .+.+++.+.+...+.+.+       ++++.+... .-+ ...+    +..+. +         ...+....-+++.+   
T Consensus       186 ~l~~i~tlhlA~np~icd-------CnL~wla~~~a~~~iets----garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~  254 (498)
T KOG4237|consen  186 GLAAIKTLHLAQNPFICD-------CNLPWLADDLAMNPIETS----GARCVSPYRLYYKRINQEDARKFLCSLESLPSR  254 (498)
T ss_pred             chhccchHhhhcCccccc-------cccchhhhHHhhchhhcc----cceecchHHHHHHHhcccchhhhhhhHHhHHHh
Confidence            334444444333221100       111111110 000 0000    00000 0         00000000011111   


Q ss_pred             eecCCCCceeccccCCccccccCCcceEEeecCCCcccccC-CCccCCCcceEEEccCCCcccccChhHHhhccccceEE
Q 046857          303 RLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVP-PSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMK  381 (439)
Q Consensus       303 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~  381 (439)
                      -.+.|.-...-+...+.   .+|+|+.|+++++ .++.+.+ .+.....++.|.+.. +++..+ ...+++.+..|++|+
T Consensus       255 ~~~~d~~d~~cP~~cf~---~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v-~~~~f~~ls~L~tL~  328 (498)
T KOG4237|consen  255 LSSEDFPDSICPAKCFK---KLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFV-SSGMFQGLSGLKTLS  328 (498)
T ss_pred             hccccCcCCcChHHHHh---hcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHH-HHHhhhccccceeee
Confidence            01111101111111122   6789999999886 4555543 445888999999987 568876 666788899999999


Q ss_pred             EcccccchhhccccccccCCCceEeccccEEecCC
Q 046857          382 IVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDC  416 (439)
Q Consensus       382 l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~  416 (439)
                      +.+. .++.+.-.       .+..+..|.++.+-.
T Consensus       329 L~~N-~it~~~~~-------aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  329 LYDN-QITTVAPG-------AFQTLFSLSTLNLLS  355 (498)
T ss_pred             ecCC-eeEEEecc-------cccccceeeeeehcc
Confidence            9887 55554321       455666777777644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.00  E-value=4.7e-06  Score=70.43  Aligned_cols=136  Identities=18%  Similarity=0.240  Sum_probs=48.0

Q ss_pred             CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF   84 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l   84 (439)
                      .+.++..+++|+|.+|. +..+-. .+.       .+.+|++|++++ ..+..+   ..+..+++|+.|++.++ .++.+
T Consensus        14 ~~~n~~~~~~L~L~~n~-I~~Ie~-L~~-------~l~~L~~L~Ls~-N~I~~l---~~l~~L~~L~~L~L~~N-~I~~i   79 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQ-ISTIEN-LGA-------TLDKLEVLDLSN-NQITKL---EGLPGLPRLKTLDLSNN-RISSI   79 (175)
T ss_dssp             -----------------------S---T-------T-TT--EEE-TT-S--S-----TT----TT--EEE--SS----S-
T ss_pred             ccccccccccccccccc-cccccc-hhh-------hhcCCCEEECCC-CCCccc---cCccChhhhhhcccCCC-CCCcc
Confidence            45567789999999986 444422 221       377999999999 333333   45667999999999994 77777


Q ss_pred             ccCCc-CccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857           85 SQGIV-STPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC  163 (439)
Q Consensus        85 ~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~  163 (439)
                      +..+. .+|+|++|++++|.+...+++.        .+..+++|+.|++.+++-... ..-...-...+|+|+.|+-...
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~--------~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNKISDLNELE--------PLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS---SCCCCG--------GGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred             ccchHHhCCcCCEEECcCCcCCChHHhH--------HHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence            65443 5899999999997765444431        233589999999998873221 1100000125789999986543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.97  E-value=7.4e-07  Score=89.35  Aligned_cols=91  Identities=21%  Similarity=0.199  Sum_probs=44.3

Q ss_pred             ccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccc
Q 046857          151 FFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFC  230 (439)
Q Consensus       151 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  230 (439)
                      .+++|+.|++.+|..+++..-......+++|++|.+..|..++...-..        +....++|++|++++|..+.+..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~--------i~~~~~~L~~L~l~~c~~~~d~~  312 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS--------IAERCPSLRELDLSGCHGLTDSG  312 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH--------HHHhcCcccEEeeecCccchHHH
Confidence            3566677777666656554433333346667777666665432211000        01112667777777666553221


Q ss_pred             cCCCcccCCCCccEEeEecC
Q 046857          231 NFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       231 ~~~~~~~~~~~L~~L~l~~c  250 (439)
                      ... ....|++++.+.+..+
T Consensus       313 l~~-~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  313 LEA-LLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHH-HHHhCcchhhhhhhhc
Confidence            111 1224555555554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.89  E-value=1.2e-05  Score=55.53  Aligned_cols=58  Identities=33%  Similarity=0.426  Sum_probs=30.8

Q ss_pred             CCcceEEeecCCCcccccC-CCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857          325 ANLERLEISECSKLQKLVP-PSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       325 ~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c  385 (439)
                      |+|++|++++| .++.++. .+..+++|++|++++ +.++.+ +...+..+++|+.|++++|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            35566666655 4555553 233566666666664 345554 3233455566666666554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=6.6e-05  Score=71.48  Aligned_cols=38  Identities=26%  Similarity=0.600  Sum_probs=19.0

Q ss_pred             cCCccEEEeccccccccccchhHHhhccccceeeeccccccchh
Q 046857          152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEM  195 (439)
Q Consensus       152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  195 (439)
                      +.++++|++++| .++. +|.  +  ..+|++|.+++|+.++.+
T Consensus        51 ~~~l~~L~Is~c-~L~s-LP~--L--P~sLtsL~Lsnc~nLtsL   88 (426)
T PRK15386         51 ARASGRLYIKDC-DIES-LPV--L--PNELTEITIENCNNLTTL   88 (426)
T ss_pred             hcCCCEEEeCCC-CCcc-cCC--C--CCCCcEEEccCCCCcccC
Confidence            455666666655 4443 231  1  234666666655555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=5.3e-05  Score=72.14  Aligned_cols=138  Identities=15%  Similarity=0.280  Sum_probs=87.1

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      .|+++++|++++| .++.+|.           .-++|++|.+++|.++..++..    -.++|++|.+.+|..+..+|..
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~-----------LP~sLtsL~Lsnc~nLtsLP~~----LP~nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPV-----------LPNELTEITIENCNNLTTLPGS----IPEGLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCC-----------CCCCCcEEEccCCCCcccCCch----hhhhhhheEccCcccccccccc
Confidence            4678899999999 5777763           1237999999999888766422    1368999999999877777643


Q ss_pred             CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857           88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS  167 (439)
Q Consensus        88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~  167 (439)
                            |+.|++.++.       ...++.+|.      .|++|.+.++.......    ++....++|+.|.+.+|..+.
T Consensus       114 ------Le~L~L~~n~-------~~~L~~LPs------sLk~L~I~~~n~~~~~~----lp~~LPsSLk~L~Is~c~~i~  170 (426)
T PRK15386        114 ------VRSLEIKGSA-------TDSIKNVPN------GLTSLSINSYNPENQAR----IDNLISPSLKTLSLTGCSNII  170 (426)
T ss_pred             ------cceEEeCCCC-------CcccccCcc------hHhheeccccccccccc----cccccCCcccEEEecCCCccc
Confidence                  6666665421       122344444      46677775432111111    111123679999999987654


Q ss_pred             cccchhHHhhccccceeeeccc
Q 046857          168 SAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       168 ~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                        .|.. +.  .+|+.|.+..+
T Consensus       171 --LP~~-LP--~SLk~L~ls~n  187 (426)
T PRK15386        171 --LPEK-LP--ESLQSITLHIE  187 (426)
T ss_pred             --Cccc-cc--ccCcEEEeccc
Confidence              3432 22  58889988754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.74  E-value=3.2e-06  Score=84.77  Aligned_cols=120  Identities=21%  Similarity=0.311  Sum_probs=77.1

Q ss_pred             CCCCccEEeeccCCCccc--cccCCcCccCccceeecCc-e-eeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee
Q 046857           66 EFPSLERVSMTRCPNMKT--FSQGIVSTPKLHEVQEEGE-L-CRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI  141 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~-~-~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i  141 (439)
                      .++.|+.+.+.+|..+..  +-.....+++|+.|+++++ . .......      .......+++|+.|+++++..+.+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~~~L~~l~l~~~~~isd~  259 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL------LLLLLSICRKLKSLDLSGCGLVTDI  259 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH------hhhhhhhcCCcCccchhhhhccCch
Confidence            367888888888877764  3344556778888887763 1 1111100      1112234688888888877755543


Q ss_pred             cCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccc
Q 046857          142 WHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLE  193 (439)
Q Consensus       142 ~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~  193 (439)
                      -... +. ..|++|+.|.+.+|..+++..-..+...+++|++|++++|..+.
T Consensus       260 ~l~~-l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  260 GLSA-LA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             hHHH-HH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence            2221 22 24789999998888877765555567778889999999887763

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.73  E-value=1.7e-05  Score=70.81  Aligned_cols=108  Identities=22%  Similarity=0.250  Sum_probs=77.6

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhc
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL  374 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l  374 (439)
                      ..|+++.|+++.+. +..+  ++..   .+++|+.|+++++ .+..+.-.-.++.+.+.|.+.. +.++++   +....+
T Consensus       305 L~Pkir~L~lS~N~-i~~v--~nLa---~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~L---SGL~KL  373 (490)
T KOG1259|consen  305 LAPKLRRLILSQNR-IRTV--QNLA---ELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETL---SGLRKL  373 (490)
T ss_pred             hccceeEEeccccc-eeee--hhhh---hcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhh---hhhHhh
Confidence            45789999988753 3333  2222   7889999999885 4555544445788999999987 567777   556778


Q ss_pred             cccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCc
Q 046857          375 VNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSL  420 (439)
Q Consensus       375 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l  420 (439)
                      =+|+.||+++. .++.....      ..++++|.|+.+.+.+.|--
T Consensus       374 YSLvnLDl~~N-~Ie~ldeV------~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  374 YSLVNLDLSSN-QIEELDEV------NHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhheecccccc-chhhHHHh------cccccccHHHHHhhcCCCcc
Confidence            89999999887 55554332      37889999999988887643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.61  E-value=4.9e-06  Score=80.32  Aligned_cols=125  Identities=15%  Similarity=0.198  Sum_probs=92.1

Q ss_pred             cccccceeecccccccccccccc-CccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLEN-YTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY  118 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  118 (439)
                      .+..|..|+|+.    +++...+ .+..+ -|+.|-+.+ ++++.+|.+++.++.|..|+.+.          +.+..+|
T Consensus       119 ~L~~lt~l~ls~----NqlS~lp~~lC~l-pLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~----------nei~slp  182 (722)
T KOG0532|consen  119 NLEALTFLDLSS----NQLSHLPDGLCDL-PLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK----------NEIQSLP  182 (722)
T ss_pred             hhhHHHHhhhcc----chhhcCChhhhcC-cceeEEEec-CccccCCcccccchhHHHhhhhh----------hhhhhch
Confidence            466777777776    4433222 13333 379999998 58899999999999999999998          7788888


Q ss_pred             hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          119 EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       119 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      ..++++.+|+.|.+..+. +..++...     ..-.|.+|+++. +++.. +|.. +..|..|++|-+.++
T Consensus       183 sql~~l~slr~l~vrRn~-l~~lp~El-----~~LpLi~lDfSc-Nkis~-iPv~-fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  183 SQLGYLTSLRDLNVRRNH-LEDLPEEL-----CSLPLIRLDFSC-NKISY-LPVD-FRKMRHLQVLQLENN  244 (722)
T ss_pred             HHhhhHHHHHHHHHhhhh-hhhCCHHH-----hCCceeeeeccc-Cceee-cchh-hhhhhhheeeeeccC
Confidence            888889999999988655 44444332     244588888854 56665 6887 888999999999854

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.54  E-value=0.00026  Score=48.67  Aligned_cols=59  Identities=31%  Similarity=0.384  Sum_probs=48.6

Q ss_pred             CccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccC-CCccCCCcceEEEccCC
Q 046857          297 PQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVP-PSWHLENLWGLQVSKCH  360 (439)
Q Consensus       297 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~  360 (439)
                      |+|+.|+++++ .++.++.+.+.   .+++|++|+++++ .++.+++ .+.++++|++|++++++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~---~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFS---NLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTT---TGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHc---CCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            58999999986 78888777665   8899999999966 5677765 45799999999999864

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.41  E-value=0.0001  Score=71.90  Aligned_cols=172  Identities=19%  Similarity=0.273  Sum_probs=102.5

Q ss_pred             ccccceeeccccccccccccccCccCCC-CccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFP-SLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      ++.++.|++.+ ..+.+++.  ....+. +|+.|++++ ..+..+|..+..+++|+.|++++          +.+..++.
T Consensus       115 ~~~l~~L~l~~-n~i~~i~~--~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~----------N~l~~l~~  180 (394)
T COG4886         115 LTNLTSLDLDN-NNITDIPP--LIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF----------NDLSDLPK  180 (394)
T ss_pred             ccceeEEecCC-cccccCcc--ccccchhhcccccccc-cchhhhhhhhhccccccccccCC----------chhhhhhh
Confidence            45777888777 33333321  133443 788888888 46777766778888888888888          44555555


Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                      .....+.|+.|+++++. +..++...    .....|++|.+.+...+.  .+.. +..+.++..+.+... .+..++.  
T Consensus       181 ~~~~~~~L~~L~ls~N~-i~~l~~~~----~~~~~L~~l~~~~N~~~~--~~~~-~~~~~~l~~l~l~~n-~~~~~~~--  249 (394)
T COG4886         181 LLSNLSNLNNLDLSGNK-ISDLPPEI----ELLSALEELDLSNNSIIE--LLSS-LSNLKNLSGLELSNN-KLEDLPE--  249 (394)
T ss_pred             hhhhhhhhhheeccCCc-cccCchhh----hhhhhhhhhhhcCCccee--cchh-hhhcccccccccCCc-eeeeccc--
Confidence            55457788888888554 55544321    134458888887753233  2322 566667777765543 3322111  


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                             .+... ++++.|+++++ .+..++. .   ....+++.+++.+.
T Consensus       250 -------~~~~l-~~l~~L~~s~n-~i~~i~~-~---~~~~~l~~L~~s~n  287 (394)
T COG4886         250 -------SIGNL-SNLETLDLSNN-QISSISS-L---GSLTNLRELDLSGN  287 (394)
T ss_pred             -------hhccc-cccceeccccc-ccccccc-c---cccCccCEEeccCc
Confidence                   11113 66888888776 3444433 2   26678888888773

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.40  E-value=1.9e-05  Score=71.92  Aligned_cols=190  Identities=18%  Similarity=0.161  Sum_probs=106.1

Q ss_pred             cccccceeeccccccccccccc------cCccCCCCccEEeeccCCCcccc--------------ccCCcCccCccceee
Q 046857           40 AFSNLKVLILDYLPRLTSFCLE------NYTLEFPSLERVSMTRCPNMKTF--------------SQGIVSTPKLHEVQE   99 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~------~~~~~l~~L~~L~l~~c~~l~~l--------------~~~~~~l~~L~~L~l   99 (439)
                      ..|+|++|+|++    +-+...      ..+..+.+|++|.+.||. +...              ..-++.-++||.+..
T Consensus        90 ~~~~L~~ldLSD----NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   90 GCPKLQKLDLSD----NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFIC  164 (382)
T ss_pred             cCCceeEeeccc----cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence            467888888888    433211      114457889999998874 3321              123455678888887


Q ss_pred             cCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCC---CcCccCCccEEEecccccccccc---chh
Q 046857          100 EGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQAL---PVRFFNYLAELEVDYCTNMSSAI---PAN  173 (439)
Q Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l---~~~~~~~L~~L~l~~~~~l~~~~---~~~  173 (439)
                      ..|.....+     ...+-..+...+.|+++++..+. +.  +.+.++   ....|++|+.|++.++. ++...   -..
T Consensus       165 ~rNrlen~g-----a~~~A~~~~~~~~leevr~~qN~-I~--~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Lak  235 (382)
T KOG1909|consen  165 GRNRLENGG-----ATALAEAFQSHPTLEEVRLSQNG-IR--PEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAK  235 (382)
T ss_pred             ecccccccc-----HHHHHHHHHhccccceEEEeccc-cc--CchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHH
Confidence            765443222     22233334456788888887443 21  111100   12368899999987753 22111   112


Q ss_pred             HHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccc----cccCCCcccCCCCccEEeEec
Q 046857          174 LLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKR----FCNFTGNIIEMPMLWSLTIEN  249 (439)
Q Consensus       174 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~~L~~L~l~~  249 (439)
                      .++.+++|++|.++||.- +.-    |.......+...+|+|++|.+.++.--..    +...   ....|.|++|.+.+
T Consensus       236 aL~s~~~L~El~l~dcll-~~~----Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~---~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLL-ENE----GAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC---MAEKPDLEKLNLNG  307 (382)
T ss_pred             Hhcccchheeeccccccc-ccc----cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH---HhcchhhHHhcCCc
Confidence            256678889999999842 211    00000001111248999999988753221    1111   22468899999988


Q ss_pred             CC
Q 046857          250 CP  251 (439)
Q Consensus       250 c~  251 (439)
                      |.
T Consensus       308 N~  309 (382)
T KOG1909|consen  308 NR  309 (382)
T ss_pred             cc
Confidence            64

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=6.1e-05  Score=77.59  Aligned_cols=34  Identities=21%  Similarity=0.454  Sum_probs=16.2

Q ss_pred             CCCCccEEeeccCCCccccccCCcCccCccceeecC
Q 046857           66 EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEG  101 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  101 (439)
                      .||+|+.|+++++ .++.+ .++++++||+.|.+.+
T Consensus       171 sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  171 SFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             ccCccceeecCCC-CccCc-HHHhccccHHHHhccC
Confidence            3555555555553 33333 4445555555554443

>PLN03150 hypothetical protein; Provisional

Probab=97.25  E-value=0.00049  Score=71.00  Aligned_cols=68  Identities=21%  Similarity=0.250  Sum_probs=37.1

Q ss_pred             hhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecccc
Q 046857          117 CYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCD  190 (439)
Q Consensus       117 l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  190 (439)
                      +|..+..+++|+.|+++++.-...++...    ..+++|+.|+++++ ++...+|.. +..+++|+.|+++++.
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGNS  501 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHH----hCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCCc
Confidence            44445556666666666544222333221    34666666666664 444444544 5666667777766654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.15  E-value=0.00085  Score=65.48  Aligned_cols=170  Identities=20%  Similarity=0.252  Sum_probs=112.3

Q ss_pred             ccCCCCccEEeeccCCCccccccCCcCcc-CccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeec
Q 046857           64 TLEFPSLERVSMTRCPNMKTFSQGIVSTP-KLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIW  142 (439)
Q Consensus        64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~  142 (439)
                      +..++.++.|++.+ ..+..++....... +|+.|++++          +.+..++..+..+++|+.|.++++. +.+++
T Consensus       112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~----------N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~  179 (394)
T COG4886         112 LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD----------NKIESLPSPLRNLPNLKNLDLSFND-LSDLP  179 (394)
T ss_pred             hhcccceeEEecCC-cccccCccccccchhhcccccccc----------cchhhhhhhhhccccccccccCCch-hhhhh
Confidence            44567899999988 46778887777774 999999998          6667776677789999999999665 66654


Q ss_pred             CCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCC
Q 046857          143 HGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLID  222 (439)
Q Consensus       143 ~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  222 (439)
                      ...    ...++|+.|++++. .+.. +|.. ......|+++.+.++..+.....+..          . .++..+.+.+
T Consensus       180 ~~~----~~~~~L~~L~ls~N-~i~~-l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~----------~-~~l~~l~l~~  241 (394)
T COG4886         180 KLL----SNLSNLNNLDLSGN-KISD-LPPE-IELLSALEELDLSNNSIIELLSSLSN----------L-KNLSGLELSN  241 (394)
T ss_pred             hhh----hhhhhhhheeccCC-cccc-Cchh-hhhhhhhhhhhhcCCcceecchhhhh----------c-ccccccccCC
Confidence            432    25788999999885 5554 4553 34556699999997643333222111          1 4555555443


Q ss_pred             cccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC
Q 046857          223 LPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP  271 (439)
Q Consensus       223 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  271 (439)
                      . .+..+....   ..+++++.+++.++ .+..++.   .....+++.|
T Consensus       242 n-~~~~~~~~~---~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L  282 (394)
T COG4886         242 N-KLEDLPESI---GNLSNLETLDLSNN-QISSISS---LGSLTNLREL  282 (394)
T ss_pred             c-eeeeccchh---ccccccceeccccc-ccccccc---ccccCccCEE
Confidence            3 222222222   36778999999884 5555543   3566777777

>PLN03150 hypothetical protein; Provisional

Probab=97.14  E-value=0.0005  Score=70.90  Aligned_cols=111  Identities=13%  Similarity=0.042  Sum_probs=67.7

Q ss_pred             ccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhc
Q 046857           43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI  122 (439)
Q Consensus        43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~  122 (439)
                      .++.|+|+++ .+... ....+..+++|+.|++++|..-..+|..++.+++|+.|++++|         .....+|..+.
T Consensus       419 ~v~~L~L~~n-~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N---------~lsg~iP~~l~  487 (623)
T PLN03150        419 FIDGLGLDNQ-GLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN---------SFNGSIPESLG  487 (623)
T ss_pred             EEEEEECCCC-Ccccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC---------CCCCCCchHHh
Confidence            4677777762 22211 1123667788888888886544467777888888888888873         22334566677


Q ss_pred             CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857          123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS  167 (439)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~  167 (439)
                      .+++|+.|+++++.....+|...  . ....++..+++.++..+.
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l--~-~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAAL--G-GRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHH--h-hccccCceEEecCCcccc
Confidence            78888888888765333433321  0 123455677777655443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.14  E-value=0.00011  Score=65.67  Aligned_cols=124  Identities=23%  Similarity=0.330  Sum_probs=61.8

Q ss_pred             CCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee--cCCC
Q 046857           68 PSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI--WHGQ  145 (439)
Q Consensus        68 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i--~~~~  145 (439)
                      ..|+++++++ +.++.+.+++.-+|.++.|++++|.++..+++           ..+++|+.|+++++. +.++  |.  
T Consensus       284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL-----------a~L~~L~~LDLS~N~-Ls~~~Gwh--  348 (490)
T KOG1259|consen  284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNL-----------AELPQLQLLDLSGNL-LAECVGWH--  348 (490)
T ss_pred             hhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhh-----------hhcccceEeecccch-hHhhhhhH--
Confidence            3466666666 34555555555566666666666554433322           125666666666443 2222  21  


Q ss_pred             CCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCc
Q 046857          146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDL  223 (439)
Q Consensus       146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  223 (439)
                          ..+.|++.|.+.++ .+.+  - +-++++=+|..||+.++ .++.+....++       +.+ |.|+.+.+.+.
T Consensus       349 ----~KLGNIKtL~La~N-~iE~--L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~I-------G~L-PCLE~l~L~~N  409 (490)
T KOG1259|consen  349 ----LKLGNIKTLKLAQN-KIET--L-SGLRKLYSLVNLDLSSN-QIEELDEVNHI-------GNL-PCLETLRLTGN  409 (490)
T ss_pred             ----hhhcCEeeeehhhh-hHhh--h-hhhHhhhhheecccccc-chhhHHHhccc-------ccc-cHHHHHhhcCC
Confidence                23566666666553 2221  1 12455556666666653 34433332222       223 55665555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.83  E-value=0.00024  Score=69.03  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=109.0

Q ss_pred             CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS   85 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~   85 (439)
                      +.++..|++|+|+.+. +.-+|....         +--|++|-+++ +++..++.+  ++..+.|..|+.+.| .+..+|
T Consensus       117 i~~L~~lt~l~ls~Nq-lS~lp~~lC---------~lpLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~n-ei~slp  182 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSNQ-LSHLPDGLC---------DLPLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKN-EIQSLP  182 (722)
T ss_pred             hhhhhHHHHhhhccch-hhcCChhhh---------cCcceeEEEec-CccccCCcc--cccchhHHHhhhhhh-hhhhch
Confidence            4456667777777764 333333322         33588888888 555555433  678899999999996 577889


Q ss_pred             cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857           86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN  165 (439)
Q Consensus        86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~  165 (439)
                      .-++.+.+|+.|.+..          +....+|.++. .-.|.+|+++ |+.+..||...    ..|..|++|-+.+++ 
T Consensus       183 sql~~l~slr~l~vrR----------n~l~~lp~El~-~LpLi~lDfS-cNkis~iPv~f----r~m~~Lq~l~LenNP-  245 (722)
T KOG0532|consen  183 SQLGYLTSLRDLNVRR----------NHLEDLPEELC-SLPLIRLDFS-CNKISYLPVDF----RKMRHLQVLQLENNP-  245 (722)
T ss_pred             HHhhhHHHHHHHHHhh----------hhhhhCCHHHh-CCceeeeecc-cCceeecchhh----hhhhhheeeeeccCC-
Confidence            8899999999999888          67778888887 5568899999 77788887665    679999999998754 


Q ss_pred             cccccchhH--Hhhccccceeeeccc
Q 046857          166 MSSAIPANL--LRCLNNLARLEVRNC  189 (439)
Q Consensus       166 l~~~~~~~~--~~~l~~L~~L~l~~~  189 (439)
                      +.+ .|+.+  -+...=.++|++.-|
T Consensus       246 LqS-PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  246 LQS-PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CCC-ChHHHHhccceeeeeeecchhc
Confidence            553 45542  223344577777777

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.72  E-value=0.0015  Score=41.32  Aligned_cols=33  Identities=12%  Similarity=0.345  Sum_probs=17.8

Q ss_pred             CccEEeeccCCCccccccCCcCccCccceeecCc
Q 046857           69 SLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGE  102 (439)
Q Consensus        69 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~  102 (439)
                      +|++|++.++ +++.+|..++++++|+.|++++|
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            5566666663 45555555555666666666553

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.0014  Score=58.80  Aligned_cols=111  Identities=12%  Similarity=0.162  Sum_probs=65.2

Q ss_pred             ccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcc-cccCCCccCCCcceEEEccCCCcccccChhHHhhccc
Q 046857          298 QLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQ-KLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVN  376 (439)
Q Consensus       298 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~  376 (439)
                      .++.+.+..|.  ...|........-||++..+.+..||.-+ +--.+...++.+-.|.+.. .++.++........+|+
T Consensus       174 ~v~tlh~~~c~--~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~  250 (418)
T KOG2982|consen  174 EVLTLHQLPCL--EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQ  250 (418)
T ss_pred             hhhhhhcCCcH--HHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCch
Confidence            45555544443  23343333334478999999998887433 2223445677777778776 56777755455667788


Q ss_pred             cceEEEcccccchhhccccccccCCCceEeccccEEe
Q 046857          377 LGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLE  413 (439)
Q Consensus       377 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~  413 (439)
                      |..|.+.+.+-...+-..+  .....+..+++++.|+
T Consensus       251 l~dlRv~~~Pl~d~l~~~e--rr~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  251 LVDLRVSENPLSDPLRGGE--RRFLLIARLTKVQVLN  285 (418)
T ss_pred             hheeeccCCcccccccCCc--ceEEEEeeccceEEec
Confidence            9999888876654442211  1112345666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00022  Score=60.29  Aligned_cols=66  Identities=17%  Similarity=0.186  Sum_probs=29.9

Q ss_pred             ccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          346 WHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       346 ~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      ..++.++.|.+.+|.++.++.-..+.+-.++|+.|++++|+.+++....       .+.++++|+.|.+.++|
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-------~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-------CLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-------HHHHhhhhHHHHhcCch
Confidence            3444445555555555554422222223345555555555554443222       33444555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.45  E-value=0.00086  Score=69.32  Aligned_cols=59  Identities=22%  Similarity=0.215  Sum_probs=24.0

Q ss_pred             cccceeeccccccc-cccccccCccCCCCccEEeeccCCCcc-ccccCCcCccCccceeecC
Q 046857           42 SNLKVLILDYLPRL-TSFCLENYTLEFPSLERVSMTRCPNMK-TFSQGIVSTPKLHEVQEEG  101 (439)
Q Consensus        42 ~~L~~L~l~~~~~l-~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~  101 (439)
                      .+|++|++++...+ +.|+. .....+|+|+.|.+.+-.... .+..-..++|||+.|||++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~-kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~  182 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPK-KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG  182 (699)
T ss_pred             HhhhhcCccccchhhccHHH-HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC
Confidence            45555555553222 12211 112335555555555521111 1112223455555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.34  E-value=0.00037  Score=63.78  Aligned_cols=92  Identities=16%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             ccCCccEEEeccccccccccc----hhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccc
Q 046857          151 FFNYLAELEVDYCTNMSSAIP----ANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKL  226 (439)
Q Consensus       151 ~~~~L~~L~l~~~~~l~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  226 (439)
                      +-++|+.+...++ .+.+ .+    +..++..+.|+.+.+..+..-..     +...+....... ++|++|++.....-
T Consensus       155 ~~~~Lrv~i~~rN-rlen-~ga~~~A~~~~~~~~leevr~~qN~I~~e-----G~~al~eal~~~-~~LevLdl~DNtft  226 (382)
T KOG1909|consen  155 SKPKLRVFICGRN-RLEN-GGATALAEAFQSHPTLEEVRLSQNGIRPE-----GVTALAEALEHC-PHLEVLDLRDNTFT  226 (382)
T ss_pred             CCcceEEEEeecc-cccc-ccHHHHHHHHHhccccceEEEecccccCc-----hhHHHHHHHHhC-Ccceeeecccchhh
Confidence            4577888887764 3332 22    22356677888888876532110     111111122224 88999998876432


Q ss_pred             c--ccccCCCcccCCCCccEEeEecCC
Q 046857          227 K--RFCNFTGNIIEMPMLWSLTIENCP  251 (439)
Q Consensus       227 ~--~~~~~~~~~~~~~~L~~L~l~~c~  251 (439)
                      .  ...... ....+|+|+.+++.+|.
T Consensus       227 ~egs~~Lak-aL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  227 LEGSVALAK-ALSSWPHLRELNLGDCL  252 (382)
T ss_pred             hHHHHHHHH-Hhcccchheeecccccc
Confidence            1  111111 23467899999999983

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.0014  Score=58.80  Aligned_cols=212  Identities=13%  Similarity=0.133  Sum_probs=108.2

Q ss_pred             cccccceeeccccccccccccc-cCccCCCCccEEeeccCCCccc-cccCCcCccCccceeecCceeeecCcCchhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLE-NYTLEFPSLERVSMTRCPNMKT-FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKC  117 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l  117 (439)
                      ..+.++.|++.+ ..+.+|... ....++|.|+.|+++.+ .+.. +...-..+.+|+.+-+.++.+.|.--        
T Consensus        69 ~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~--------  138 (418)
T KOG2982|consen   69 SVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS--------  138 (418)
T ss_pred             Hhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhh--------
Confidence            467889999988 444444322 22567999999999875 3432 21111246699999999877666331        


Q ss_pred             hhhhcCCCCccEEEccCCCC--ceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchh
Q 046857          118 YEEMIGFRDIQYLQLSHFPR--LKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEM  195 (439)
Q Consensus       118 ~~~~~~~~~L~~L~l~~~~~--l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  195 (439)
                      .+....++.+++|+++.+..  +.. .... .. ..-+.+++|+..+|....-.-.-...+-++++..+-+..|+ ++..
T Consensus       139 ~s~l~~lP~vtelHmS~N~~rq~n~-Dd~c-~e-~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~  214 (418)
T KOG2982|consen  139 TSSLDDLPKVTELHMSDNSLRQLNL-DDNC-IE-DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTE  214 (418)
T ss_pred             hhhhhcchhhhhhhhccchhhhhcc-cccc-cc-ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccch
Confidence            11222456677887776531  110 0000 11 12356777777777422110011123345677777666653 2222


Q ss_pred             ccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccc----cccccccCCCCC
Q 046857          196 LHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISN----SVVHVTTDNKEP  271 (439)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~----~~~~~~~~L~~L  271 (439)
                      -.-++.+.        ||.+.-|++... ++..+..-. ...++|+|..+.+...|-...+...    .+++.+++++.|
T Consensus       215 s~ek~se~--------~p~~~~LnL~~~-~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL  284 (418)
T KOG2982|consen  215 SSEKGSEP--------FPSLSCLNLGAN-NIDSWASVD-ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL  284 (418)
T ss_pred             hhcccCCC--------CCcchhhhhccc-ccccHHHHH-HHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence            11111111        355555555443 233221111 3347788888888775543322111    234556666666


Q ss_pred             CccC
Q 046857          272 QKLT  275 (439)
Q Consensus       272 ~~~~  275 (439)
                      +...
T Consensus       285 NGsk  288 (418)
T KOG2982|consen  285 NGSK  288 (418)
T ss_pred             cCcc
Confidence            3333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.82  E-value=0.012  Score=37.23  Aligned_cols=35  Identities=23%  Similarity=0.349  Sum_probs=18.8

Q ss_pred             cCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC
Q 046857           92 PKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP  136 (439)
Q Consensus        92 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  136 (439)
                      ++|++|++++          +.++.++..+..+++|+.|+++++.
T Consensus         1 ~~L~~L~l~~----------N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSN----------NQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETS----------SS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccC----------CCCcccCchHhCCCCCCEEEecCCC
Confidence            3566666666          3444455445556666666666543

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.22  E-value=0.0011  Score=66.51  Aligned_cols=107  Identities=23%  Similarity=0.208  Sum_probs=65.8

Q ss_pred             ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCc-cCCCcceEEEccCCCcccccChhHH
Q 046857          293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSW-HLENLWGLQVSKCHGLINVLTLSAS  371 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~p~~~~  371 (439)
                      ...+|.|++|+++++ +++.+.  .+.   .++.|++|+++.+ .+..+|.... .|. |+.|.+++ +.++.+   ..+
T Consensus       183 Lqll~ale~LnLshN-k~~~v~--~Lr---~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL---~gi  250 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHN-KFTKVD--NLR---RLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRN-NALTTL---RGI  250 (1096)
T ss_pred             HHHHHHhhhhccchh-hhhhhH--HHH---hcccccccccccc-hhccccccchhhhh-heeeeecc-cHHHhh---hhH
Confidence            345577888888874 333332  122   7888999998764 4555654333 344 88888887 567776   345


Q ss_pred             hhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          372 KNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       372 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      .++.+|+.||++++ -+.+.-      .-..+..+..|+.|++.+.|
T Consensus       251 e~LksL~~LDlsyN-ll~~hs------eL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYN-LLSEHS------ELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HhhhhhhccchhHh-hhhcch------hhhHHHHHHHHHHHhhcCCc
Confidence            67888999999875 221111      11134456667777777754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.07  E-value=0.0098  Score=50.58  Aligned_cols=70  Identities=21%  Similarity=0.280  Sum_probs=52.7

Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecccccc
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSL  192 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l  192 (439)
                      .+.+++.++.|.+.+|.++.+-..+. +.. ..++|+.|++++|.++++..-.. +..+++|+.|.+.+.+.+
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~-l~~-~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLER-LGG-LAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHH-hcc-cccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchhh
Confidence            45567888888999998887643333 332 67899999999999999854444 788899999988876554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.45  E-value=0.049  Score=46.48  Aligned_cols=88  Identities=17%  Similarity=0.286  Sum_probs=56.0

Q ss_pred             cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc--cCCcCccCccceeecCceeeecCcCchhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS--QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKC  117 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l  117 (439)
                      .++.|++|.+.. .++..+... ....+|+|..|.+.++ .+..+.  .....+|+|++|.+-++.++...++.-.    
T Consensus        62 ~l~rL~tLll~n-NrIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y----  134 (233)
T KOG1644|consen   62 HLPRLHTLLLNN-NRITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY----  134 (233)
T ss_pred             CccccceEEecC-Ccceeeccc-hhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcccCceeE----
Confidence            577888888887 344433221 1234678888888884 444432  3356788888888888776665555332    


Q ss_pred             hhhhcCCCCccEEEccCCC
Q 046857          118 YEEMIGFRDIQYLQLSHFP  136 (439)
Q Consensus       118 ~~~~~~~~~L~~L~l~~~~  136 (439)
                        .+..+++|+.|++.+..
T Consensus       135 --vl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  135 --VLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             --EEEecCcceEeehhhhh
Confidence              13357888888888654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.17  E-value=0.075  Score=45.37  Aligned_cols=37  Identities=16%  Similarity=0.030  Sum_probs=16.7

Q ss_pred             ccCCccEEEeccccccccc-c-chhHHhhccccceeeecc
Q 046857          151 FFNYLAELEVDYCTNMSSA-I-PANLLRCLNNLARLEVRN  188 (439)
Q Consensus       151 ~~~~L~~L~l~~~~~l~~~-~-~~~~~~~l~~L~~L~l~~  188 (439)
                      .||.|++|.+-+.+ ++.. - -.+++..+++|+.||.+.
T Consensus       111 ~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence            45566666655432 1110 0 011234456666666553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.12  E-value=0.053  Score=48.08  Aligned_cols=117  Identities=21%  Similarity=0.250  Sum_probs=60.7

Q ss_pred             ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857           64 TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH  143 (439)
Q Consensus        64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~  143 (439)
                      ...+..|+.+++.++. +..+ ..+..+++|++|.++.+......++..       -...+++|+.+.++++. ++.+..
T Consensus        39 ~d~~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~v-------l~e~~P~l~~l~ls~Nk-i~~lst  108 (260)
T KOG2739|consen   39 TDEFVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEV-------LAEKAPNLKVLNLSGNK-IKDLST  108 (260)
T ss_pred             cccccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCccccccccee-------hhhhCCceeEEeecCCc-cccccc
Confidence            3356777777777763 3322 234567788888887754333333321       12235677777777543 332111


Q ss_pred             CCCCCcCccCCccEEEeccccccccccc-hhHHhhccccceeeecccccc
Q 046857          144 GQALPVRFFNYLAELEVDYCTNMSSAIP-ANLLRCLNNLARLEVRNCDSL  192 (439)
Q Consensus       144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~~~~~l  192 (439)
                       . -|...+.+|..|++.+|.-..-.-+ ..++.-+++|+.|+-.+...-
T Consensus       109 -l-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  109 -L-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             -c-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence             0 1112466677777766642221111 123555667777766655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.07  E-value=0.0037  Score=55.72  Aligned_cols=104  Identities=14%  Similarity=0.186  Sum_probs=65.5

Q ss_pred             cccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc--c
Q 046857            9 PNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS--Q   86 (439)
Q Consensus         9 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~   86 (439)
                      +.+.+.|+..+|. +..|.-. .        .|+.|++|.|+-    +++..-..+..|.+|++|+++.+ .+..+.  +
T Consensus        18 l~~vkKLNcwg~~-L~DIsic-~--------kMp~lEVLsLSv----NkIssL~pl~rCtrLkElYLRkN-~I~sldEL~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISIC-E--------KMPLLEVLSLSV----NKISSLAPLQRCTRLKELYLRKN-CIESLDELE   82 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHHH-H--------hcccceeEEeec----cccccchhHHHHHHHHHHHHHhc-ccccHHHHH
Confidence            4566788888886 3332111 1        588999999988    55544466778999999999874 344332  1


Q ss_pred             CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEE
Q 046857           87 GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQ  131 (439)
Q Consensus        87 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~  131 (439)
                      -+..+|+|+.|.|..|...-.++- +.-..+.+   -+++|+.|+
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~-nYR~~VLR---~LPnLkKLD  123 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQ-NYRRKVLR---VLPNLKKLD  123 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccch-hHHHHHHH---Hcccchhcc
Confidence            245688999999988765544432 22333333   356666665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.04  E-value=0.0027  Score=50.46  Aligned_cols=34  Identities=12%  Similarity=0.347  Sum_probs=16.0

Q ss_pred             CCCccEEeeccCCCccccccCCcCccCccceeecC
Q 046857           67 FPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEG  101 (439)
Q Consensus        67 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  101 (439)
                      ++-++.+++.+ +.+..+|.++...+.|+.++++.
T Consensus        76 f~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   76 FPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF  109 (177)
T ss_pred             cchhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence            34444444444 24444444444444455444444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.27  E-value=0.034  Score=54.62  Aligned_cols=106  Identities=16%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857           64 TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH  143 (439)
Q Consensus        64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~  143 (439)
                      ...+.+|+.|++.+ .+++.+...++.+++|++|+++++.++...++.           .+..|+.|++.++. +..+..
T Consensus        91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~-----------~l~~L~~L~l~~N~-i~~~~~  157 (414)
T KOG0531|consen   91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS-----------TLTLLKELNLSGNL-ISDISG  157 (414)
T ss_pred             cccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccchh-----------hccchhhheeccCc-chhccC
Confidence            44567777777777 355555443566777777777775544333322           24557777777554 333221


Q ss_pred             CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      .     ..+++|+.++++++. +..+-+.. ...+.+++.+.+.++
T Consensus       158 ~-----~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  158 L-----ESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGN  196 (414)
T ss_pred             C-----ccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCC
Confidence            1     135666777776653 33211101 245566666666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.16  E-value=0.058  Score=28.28  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=14.2

Q ss_pred             CccEEeeccCCCccccccCCcC
Q 046857           69 SLERVSMTRCPNMKTFSQGIVS   90 (439)
Q Consensus        69 ~L~~L~l~~c~~l~~l~~~~~~   90 (439)
                      +|++|++++| .++.+|.++++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            4777888887 66677766443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.80  E-value=0.06  Score=52.91  Aligned_cols=104  Identities=16%  Similarity=0.186  Sum_probs=67.3

Q ss_pred             cccccceeeccccccccccccccC-ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENY-TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY  118 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  118 (439)
                      .+++|+.|++.+    +.+..... +..+++|+.|++++ ..+..+ .++..++.|+.|++.+|.+....++.       
T Consensus        93 ~~~~l~~l~l~~----n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~~-------  159 (414)
T KOG0531|consen   93 KLKSLEALDLYD----NKIEKIENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGNLISDISGLE-------  159 (414)
T ss_pred             cccceeeeeccc----cchhhcccchhhhhcchheeccc-cccccc-cchhhccchhhheeccCcchhccCCc-------
Confidence            578888888888    43333233 55688888898888 466665 34566777888888886655444332       


Q ss_pred             hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857          119 EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT  164 (439)
Q Consensus       119 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~  164 (439)
                          .+..|+.++++++. +..+...  . ...+.+++.+.+.+..
T Consensus       160 ----~l~~L~~l~l~~n~-i~~ie~~--~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  160 ----SLKSLKLLDLSYNR-IVDIEND--E-LSELISLEELDLGGNS  197 (414)
T ss_pred             ----cchhhhcccCCcch-hhhhhhh--h-hhhccchHHHhccCCc
Confidence                26778888887654 4433321  0 0357788888887753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.67  E-value=0.039  Score=48.90  Aligned_cols=91  Identities=16%  Similarity=0.124  Sum_probs=56.9

Q ss_pred             ccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc--cCCcCccCccceeecCceeeecCcCchhhhh
Q 046857           39 IAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS--QGIVSTPKLHEVQEEGELCRWEGNLNSTIQK  116 (439)
Q Consensus        39 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  116 (439)
                      ..+|+|+.|.+++-..-........+..+|+|++++++++ +++.+.  .....+.+|..|++..|..+-..++...   
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~---  137 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREK---  137 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHH---
Confidence            3688999999998321112222233556799999999995 454321  2345678888899888877765554332   


Q ss_pred             hhhhhcCCCCccEEEccCCC
Q 046857          117 CYEEMIGFRDIQYLQLSHFP  136 (439)
Q Consensus       117 l~~~~~~~~~L~~L~l~~~~  136 (439)
                      ++.   -+++|+.|+-.+..
T Consensus       138 vf~---ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  138 VFL---LLPSLKYLDGCDVD  154 (260)
T ss_pred             HHH---HhhhhccccccccC
Confidence            222   25667777655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.61  E-value=0.01  Score=53.04  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=16.4

Q ss_pred             CCCCccEEeEecCCCcceeccc---cccccccCCCCC
Q 046857          238 EMPMLWSLTIENCPDMETFISN---SVVHVTTDNKEP  271 (439)
Q Consensus       238 ~~~~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L  271 (439)
                      ++|+|+.|++.+.|-.......   .++..+|+|++|
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL  122 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL  122 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence            4556666666554433322221   234455666665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=92.52  E-value=0.0041  Score=62.55  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=52.6

Q ss_pred             ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857           64 TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH  143 (439)
Q Consensus        64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~  143 (439)
                      +.-++.|+.|+++++ ++.... .+-.+++|++|+|++|.++....+         ++.++. |+.|.++++. +..+..
T Consensus       183 Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l---------~~~gc~-L~~L~lrnN~-l~tL~g  249 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQL---------SMVGCK-LQLLNLRNNA-LTTLRG  249 (1096)
T ss_pred             HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhcccccc---------chhhhh-heeeeecccH-HHhhhh
Confidence            344677777777774 444432 455677777777777333322211         122333 6666666433 332211


Q ss_pred             CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                         +  .++.+|+.|+++++ -+.+--....+..+..|+.|.+.++
T Consensus       250 ---i--e~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  250 ---I--ENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             ---H--HhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCC
Confidence               1  24566666666653 1211111122444556666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.54  E-value=0.97  Score=35.84  Aligned_cols=60  Identities=18%  Similarity=0.115  Sum_probs=23.3

Q ss_pred             CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeecc
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTR   77 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~   77 (439)
                      |..|++|+.+.+..  .++.+....-.       .+++|+.+.+.+  .+..+... .+..+++|+.+.+.+
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~-------~~~~l~~i~~~~--~~~~i~~~-~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFS-------NCTSLKSINFPN--NLTSIGDN-AFSNCKSLESITFPN   67 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTT-------T-TT-SEEEESS--TTSCE-TT-TTTT-TT-EEEEETS
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhcc-------cccccccccccc--ccccccee-eeecccccccccccc
Confidence            55666677666653  34444332211       344566666554  23333221 134455566666644

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.44  E-value=0.21  Score=24.26  Aligned_cols=16  Identities=13%  Similarity=0.486  Sum_probs=7.6

Q ss_pred             CCccEEeeccCCCcccc
Q 046857           68 PSLERVSMTRCPNMKTF   84 (439)
Q Consensus        68 ~~L~~L~l~~c~~l~~l   84 (439)
                      ++|+.|++++|. ++.+
T Consensus         1 ~~L~~L~l~~n~-L~~l   16 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSL   16 (17)
T ss_dssp             TT-SEEEETSS---SSE
T ss_pred             CccCEEECCCCC-CCCC
Confidence            356666666664 4444

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.29  E-value=2.9  Score=33.04  Aligned_cols=55  Identities=18%  Similarity=0.301  Sum_probs=20.2

Q ss_pred             ccCCcceEEeecCCCcccccCCCc-cCCCcceEEEccCCCcccccChhHHhhccccceEEEc
Q 046857          323 VFANLERLEISECSKLQKLVPPSW-HLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV  383 (439)
Q Consensus       323 ~~~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~  383 (439)
                      .+++++++.+.+  .+..++.... .+++|+.+.+..  .++.+ +...+... +|+.+.+.
T Consensus        56 ~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i-~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   56 NCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEI-GSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             T-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEE-HTTTTTT--T--EEE-T
T ss_pred             cccccccccccc--cccccccccccccccccccccCc--cccEE-chhhhcCC-CceEEEEC
Confidence            444556665533  3333333332 366666666643  24443 22223333 55555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=86.33  E-value=0.096  Score=41.92  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=41.3

Q ss_pred             CCcceEEeecCCCcccccCCCc-cCCCcceEEEccCCCcccccChhHHhhccccceEEEcccc
Q 046857          325 ANLERLEISECSKLQKLVPPSW-HLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCK  386 (439)
Q Consensus       325 ~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~  386 (439)
                      ..|...+++++ .+..+|+.+. .++..+.|++.+ +++.++ |+. ...+|.|+.|.++..+
T Consensus        53 ~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdv-PeE-~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   53 YELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDV-PEE-LAAMPALRSLNLRFNP  111 (177)
T ss_pred             ceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhc-hHH-HhhhHHhhhcccccCc
Confidence            35666677664 5666666554 566888888887 578887 776 4578888888888763

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.37  E-value=0.59  Score=25.52  Aligned_cols=18  Identities=28%  Similarity=0.470  Sum_probs=12.0

Q ss_pred             CCCcceEEEccCCCcccc
Q 046857          348 LENLWGLQVSKCHGLINV  365 (439)
Q Consensus       348 l~~L~~L~l~~c~~l~~l  365 (439)
                      +++|++|++++|.++++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            456777777777766664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=83.20  E-value=0.19  Score=45.03  Aligned_cols=136  Identities=15%  Similarity=0.188  Sum_probs=62.0

Q ss_pred             cccccceeeccccccccccccc------cCccCCCCccEEeeccCCCcccc-----c---------cCCcCccCccceee
Q 046857           40 AFSNLKVLILDYLPRLTSFCLE------NYTLEFPSLERVSMTRCPNMKTF-----S---------QGIVSTPKLHEVQE   99 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~------~~~~~l~~L~~L~l~~c~~l~~l-----~---------~~~~~l~~L~~L~l   99 (439)
                      .+|.|+..++++    +-+...      ..+.+-..|.+|.+.|| .+..+     .         .-+..-|.|+.+..
T Consensus        90 kcp~l~~v~LSD----NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          90 KCPRLQKVDLSD----NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             cCCcceeeeccc----cccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            456666666666    332211      12344566777777775 33321     1         12334566666665


Q ss_pred             cCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCC-CC---cCccCCccEEEeccccccccccc---h
Q 046857          100 EGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQA-LP---VRFFNYLAELEVDYCTNMSSAIP---A  172 (439)
Q Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~-l~---~~~~~~L~~L~l~~~~~l~~~~~---~  172 (439)
                      ..|...     +......-..+..-..|+++.+..+. +.  |.+.+ +.   ...+++|+.|++..+. ++....   .
T Consensus       165 grNRle-----ngs~~~~a~~l~sh~~lk~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La  235 (388)
T COG5238         165 GRNRLE-----NGSKELSAALLESHENLKEVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLA  235 (388)
T ss_pred             ccchhc-----cCcHHHHHHHHHhhcCceeEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHH
Confidence            443322     11111111122233467777766332 21  11100 00   0246777777776632 221111   1


Q ss_pred             hHHhhccccceeeeccc
Q 046857          173 NLLRCLNNLARLEVRNC  189 (439)
Q Consensus       173 ~~~~~l~~L~~L~l~~~  189 (439)
                      ..+...+.|++|.+.+|
T Consensus       236 ~al~~W~~lrEL~lnDC  252 (388)
T COG5238         236 DALCEWNLLRELRLNDC  252 (388)
T ss_pred             HHhcccchhhhccccch
Confidence            12344566788888777

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=82.70  E-value=1.3  Score=39.81  Aligned_cols=123  Identities=14%  Similarity=0.074  Sum_probs=70.8

Q ss_pred             cccCceEEEccccccceeccccccccccccccccccceeeccccc--cccc-cc-----cccCccCCCCccEEeeccCCC
Q 046857            9 PNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLP--RLTS-FC-----LENYTLEFPSLERVSMTRCPN   80 (439)
Q Consensus         9 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~-~~-----~~~~~~~l~~L~~L~l~~c~~   80 (439)
                      +..++.++|++|..-++......+    .+..-.+|+..++++.-  +.++ ++     ..+.+-+||+|+..+++++..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~----~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCN----VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHH----HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            556788999988743332222211    12235688888887741  1111 11     113356799999999999653


Q ss_pred             ccccc----cCCcCccCccceeecCceeeecCcC--chhhhhh--hhhhcCCCCccEEEccCC
Q 046857           81 MKTFS----QGIVSTPKLHEVQEEGELCRWEGNL--NSTIQKC--YEEMIGFRDIQYLQLSHF  135 (439)
Q Consensus        81 l~~l~----~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~l--~~~~~~~~~L~~L~l~~~  135 (439)
                      =...|    .-+++.+.|++|.+++|+..-.++-  ......+  -+....-+.|+.+....+
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            33333    4477899999999999776543322  1112111  122334577887776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	439
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 60/454 (13%), Positives = 134/454 (29%), Gaps = 123/454 (27%)

Query: 15  LNVSYCEKIEEII-------GHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEF 67
           LN+  C   E ++         +           SN+K+ I      L           +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PY 243

Query: 68  PS----LERVSMTRCPNMKTFSQG---IVST-----------------------PKLHEV 97
            +    L  V   +      F+     +++T                         L   
Sbjct: 244 ENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 98  QEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAE 157
           + +  L ++   L+   Q    E+         +LS                  ++    
Sbjct: 302 EVKSLLLKY---LDCRPQDLPREV---LTTNPRRLSIIAESIRDG-----LAT-WDNWKH 349

Query: 158 LEVDYCTNMSSAIPANLLRCLNNLARLEVRNC-DSLE-------------EMLHLEELNA 203
           +  D    +++ I +     LN L   E R   D L               ++  + + +
Sbjct: 350 VNCD---KLTTIIES----SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 204 DKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDM-ETFISNSVV 262
           D   +     +L   +L++    K+    T +I  + +   + +EN   +  + + +  +
Sbjct: 403 DVMVV---VNKLHKYSLVE----KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 263 HVTTDNKEPQKLTLEEYFL--LA-HQVQPLFDEKVA-FPQL--------RKLRLSGLHKV 310
             T D+ +     L++YF   +  H       E++  F  +        +K+R       
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST--- 512

Query: 311 QHLWKENDESNKVFANLERLE--ISE-CSKLQKLVPPSWHLENLWGLQVSKCHGLINVLT 367
              W  +         L+  +  I +   K ++LV                 + +++ L 
Sbjct: 513 --AWNASGSILNTLQQLKFYKPYICDNDPKYERLV-----------------NAILDFL- 552

Query: 368 LSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETE 401
               +NL+      ++   +M E     + EE  
Sbjct: 553 PKIEENLICSKYTDLLRIALMAE--DEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 61/461 (13%), Positives = 115/461 (24%), Gaps = 171/461 (37%)

Query: 21  EKIEEIIGHVGEEVKENRIAFSNLK-------------VLILDYLPRLTSFCLENYTLEF 67
           E+I+ II    + V      F  L              VL ++Y      F +     E 
Sbjct: 49  EEIDHIIM-SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-----KFLMSPIKTEQ 102

Query: 68  --PSLERVSMTRCPNM-----KTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE 120
             PS+         +      + F++  VS  + +    +  L       N  I      
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDG---- 157

Query: 121 MIGF----------RDIQYLQLSHFPRLKEI-WHGQALPVRFFNYLAELEVDYCTNMSSA 169
           ++G               Y          +I W               L +  C      
Sbjct: 158 VLGSGKTWVALDVCLS--YKVQCKMDF--KIFW---------------LNLKNCN----- 193

Query: 170 IPANLLRCLNNLARLEVRNCDSLEE-----MLHLEELNADKEHI--GPLFPRLFSLTLID 222
            P  +L  L  L      N  S  +      L +  + A+   +     +     L ++ 
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLL 251

Query: 223 LPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLL 282
                       N+       +           F  +  + +TT  K+           +
Sbjct: 252 ------------NV------QNAKA-----WNAFNLSCKILLTTRFKQ-----------V 277

Query: 283 AHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLV 342
              +       ++           L          DE   +      L+     + Q L 
Sbjct: 278 TDFLSAATTTHISLDHHSM----TLTP--------DEVKSLLLKY--LDC----RPQDL- 318

Query: 343 PPSWHLENLWGLQVSKCHGL-INVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETE 401
           P           +V   +   ++++  S    L      K V+C  +  II+S       
Sbjct: 319 PR----------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES------- 361

Query: 402 DCIVFGKLRYLELDCLPSLTSFCLDLQDTLD---LFDAFSV 439
                                  L++ +  +   +FD  SV
Sbjct: 362 ----------------------SLNVLEPAEYRKMFDRLSV 380

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 53/384 (13%), Positives = 121/384 (31%), Gaps = 69/384 (17%)

Query: 67  FPSLERVSMTRCPNMKTFS-----QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM 121
           FP+L  + +   P    F+      G   TP + E+       R   +++   ++     
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI---SNNLRQLKSVH--FRRMI--- 123

Query: 122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNL 181
           +   D+  L  +    L+                  L++D C+  ++    +++     +
Sbjct: 124 VSDLDLDRLAKARADDLET-----------------LKLDKCSGFTTDGLLSIVTHCRKI 166

Query: 182 ARLEVRNC----DSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNII 237
             L +          + +  L + N   E +         ++  DL  + R C       
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC------- 219

Query: 238 EMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFP 297
               L S+ + +   +E            + +E    +L       ++   + ++ +   
Sbjct: 220 --RSLVSVKVGDFEILE---LVGFFKAAANLEEFCGGSL-------NEDIGMPEKYMNLV 267

Query: 298 QLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKL-QKLVPPSWHLENLWGLQV 356
             RKL   GL  +              A + +L++       +          NL  L+ 
Sbjct: 268 FPRKLCRLGLSYMGPNE--MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325

Query: 357 SKCHGLINVLTLSASKNLVNLGRMKIVDCKMME--EIIQSQVGEETEDCIVFG--KLRYL 412
               G   +  L  ++    L R++I      +  E  +  V +     +  G  +L Y+
Sbjct: 326 RNVIGDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383

Query: 413 ELDC-------LPSLTSFCLDLQD 429
            +         L S+ ++  +L D
Sbjct: 384 AVYVSDITNESLESIGTYLKNLCD 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	439
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.66
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.64
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.63
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.62
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.58
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.53
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.53
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.53
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.51
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.5
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.5
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.49
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.47
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.46
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.43
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.37
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.37
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.33
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.33
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.32
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.18
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.03
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.01
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.99
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.93
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.92
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.88
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.82
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.74
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.52
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.32
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.95
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.78
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.61
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.41
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.92
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.83

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=7.6e-24  Score=222.36  Aligned_cols=365  Identities=13%  Similarity=-0.003  Sum_probs=186.1

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      .+++|++|++++|...+.++..+..       .+++|++|+++++.--...+  ..+..+++|++|++++|.....+|..
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~-------~~~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~ip~~  337 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSG-------ACDTLTGLDLSGNHFYGAVP--PFFGSCSLLESLALSSNNFSGELPMD  337 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCT-------TCTTCSEEECCSSEEEECCC--GGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred             ccCCCCEEECcCCccCCccCHHHHh-------hcCcCCEEECcCCcCCCccc--hHHhcCCCccEEECCCCcccCcCCHH
Confidence            6788889999888766566665442       24677777777732111111  22556777777777776433356654


Q ss_pred             -CcCccCccceeecCceeeecCcCchhhhh------------------hhhhhcC--CCCccEEEccCCCCceeecCCCC
Q 046857           88 -IVSTPKLHEVQEEGELCRWEGNLNSTIQK------------------CYEEMIG--FRDIQYLQLSHFPRLKEIWHGQA  146 (439)
Q Consensus        88 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------------------l~~~~~~--~~~L~~L~l~~~~~l~~i~~~~~  146 (439)
                       +..+++|++|++++|.+....  ...+..                  ++..+..  +++|++|+++++.....++... 
T Consensus       338 ~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-  414 (768)
T 3rgz_A          338 TLLKMRGLKVLDLSFNEFSGEL--PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-  414 (768)
T ss_dssp             HHTTCTTCCEEECCSSEEEECC--CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-
T ss_pred             HHhcCCCCCEEeCcCCccCccc--cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-
Confidence             666777777777765443110  000111                  1111111  3334444444333111222111 


Q ss_pred             CCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccc
Q 046857          147 LPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKL  226 (439)
Q Consensus       147 l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  226 (439)
                         ..+++|+.|+++++ .+++.+|.. +..+++|++|++++|.....++.         .+..+ ++|++|++.++.-.
T Consensus       415 ---~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~---------~~~~l-~~L~~L~L~~N~l~  479 (768)
T 3rgz_A          415 ---SNCSELVSLHLSFN-YLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQ---------ELMYV-KTLETLILDFNDLT  479 (768)
T ss_dssp             ---GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCCSCCCG---------GGGGC-TTCCEEECCSSCCC
T ss_pred             ---hcCCCCCEEECcCC-cccCcccHH-HhcCCCCCEEECCCCcccCcCCH---------HHcCC-CCceEEEecCCccc
Confidence               23444555555444 233333333 44445555555554432211111         11112 55555555555333


Q ss_pred             cccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEee
Q 046857          227 KRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRL  304 (439)
Q Consensus       227 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  304 (439)
                      +.++...   ..+++|+.|++.++. +....+.. ...+++|+.|  +.+.+.+.++         .....+++|+.|++
T Consensus       480 ~~~p~~l---~~l~~L~~L~L~~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p---------~~l~~l~~L~~L~L  545 (768)
T 3rgz_A          480 GEIPSGL---SNCTNLNWISLSNNR-LTGEIPKW-IGRLENLAILKLSNNSFSGNIP---------AELGDCRSLIWLDL  545 (768)
T ss_dssp             SCCCGGG---GGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSCCEEECC---------GGGGGCTTCCEEEC
T ss_pred             CcCCHHH---hcCCCCCEEEccCCc-cCCcCChH-HhcCCCCCEEECCCCcccCcCC---------HHHcCCCCCCEEEC
Confidence            3333322   255566666665543 22222222 2345555555  4444443322         12344555666665


Q ss_pred             cCCCCceeccccC------------------------------------------------------------------C
Q 046857          305 SGLHKVQHLWKEN------------------------------------------------------------------D  318 (439)
Q Consensus       305 ~~~~~l~~l~~~~------------------------------------------------------------------~  318 (439)
                      ++++-.+.++...                                                                  .
T Consensus       546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~  625 (768)
T 3rgz_A          546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS  625 (768)
T ss_dssp             CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred             CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence            5442211111000                                                                  0


Q ss_pred             ccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccc
Q 046857          319 ESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGE  398 (439)
Q Consensus       319 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  398 (439)
                      ...+.+++|++|+++++.....+|..++.+++|+.|+++++ +++..+|.. ++.+++|+.|+++++..-..++.     
T Consensus       626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~-----  698 (768)
T 3rgz_A          626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQ-----  698 (768)
T ss_dssp             CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEECCSSCCEECCCG-----
T ss_pred             hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChH-HhCCCCCCEEECCCCcccCcCCh-----
Confidence            00113467888888887666677777888888888888875 466555764 46788888888888743334443     


Q ss_pred             cCCCceEeccccEEecCCCCCccee
Q 046857          399 ETEDCIVFGKLRYLELDCLPSLTSF  423 (439)
Q Consensus       399 ~~~~~~~l~~L~~l~l~~c~~l~~~  423 (439)
                         .+..+++|++|++++++--..+
T Consensus       699 ---~l~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          699 ---AMSALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             ---GGGGCCCCSEEECCSSEEEEEC
T ss_pred             ---HHhCCCCCCEEECcCCcccccC
Confidence               5667788888888887443333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=1.3e-23  Score=220.70  Aligned_cols=359  Identities=15%  Similarity=0.047  Sum_probs=203.7

Q ss_pred             CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS   85 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~   85 (439)
                      ++++++|++|++++|...+..+.  .        .+++|++|+++++. +...  .+.+..+++|++|++++|..-..+|
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~~--~--------~l~~L~~L~Ls~n~-l~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~  240 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVDV--S--------RCVNLEFLDVSSNN-FSTG--IPFLGDCSALQHLDISGNKLSGDFS  240 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCBC--T--------TCTTCCEEECCSSC-CCSC--CCBCTTCCSCCEEECCSSCCCSCHH
T ss_pred             hccCCCCCEEECCCCcccccCCc--c--------cCCcCCEEECcCCc-CCCC--CcccccCCCCCEEECcCCcCCCccc
Confidence            67788999999999875443332  1        57888888888842 2211  1236678888888888875444677


Q ss_pred             cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857           86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN  165 (439)
Q Consensus        86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~  165 (439)
                      ..++.+++|++|++++|........         .  .+++|++|+++++.....++...   ...+++|++|+++++ .
T Consensus       241 ~~l~~l~~L~~L~Ls~n~l~~~~~~---------~--~l~~L~~L~L~~n~l~~~ip~~~---~~~~~~L~~L~Ls~n-~  305 (768)
T 3rgz_A          241 RAISTCTELKLLNISSNQFVGPIPP---------L--PLKSLQYLSLAENKFTGEIPDFL---SGACDTLTGLDLSGN-H  305 (768)
T ss_dssp             HHTTTCSSCCEEECCSSCCEESCCC---------C--CCTTCCEEECCSSEEEESCCCCS---CTTCTTCSEEECCSS-E
T ss_pred             HHHhcCCCCCEEECCCCcccCccCc---------c--ccCCCCEEECcCCccCCccCHHH---HhhcCcCCEEECcCC-c
Confidence            7788888888888888654321110         0  34555555555443221222211   012344555555443 2


Q ss_pred             cccccchhHHhhccccceeeeccccccchhcc--ccccc--------------cccCcccccccccceEecCCccccccc
Q 046857          166 MSSAIPANLLRCLNNLARLEVRNCDSLEEMLH--LEELN--------------ADKEHIGPLFPRLFSLTLIDLPKLKRF  229 (439)
Q Consensus       166 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~~l~~~  229 (439)
                      ++..+|.. ++.+++|++|++++|.....++.  +....              .....+..+.++|++|+++++.-.+.+
T Consensus       306 l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~  384 (768)
T 3rgz_A          306 FYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI  384 (768)
T ss_dssp             EEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred             CCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence            22223332 44444444444444422111111  00000              000011112126666666665433333


Q ss_pred             ccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCC
Q 046857          230 CNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGL  307 (439)
Q Consensus       230 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  307 (439)
                      +.... ...+++|+.|++.+| .+....+.. ...+++|+.|  +.+.+.+.++         .....+++|+.|+++++
T Consensus       385 ~~~~~-~~~~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p---------~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          385 LPNLC-QNPKNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFNYLSGTIP---------SSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             CTTTT-CSTTCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSSEEESCCC---------GGGGGCTTCCEEECCSS
T ss_pred             Chhhh-hcccCCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCCcccCccc---------HHHhcCCCCCEEECCCC
Confidence            33221 112567777777775 333333332 3567777777  4445544332         23456778888888876


Q ss_pred             CCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccccc
Q 046857          308 HKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKM  387 (439)
Q Consensus       308 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~  387 (439)
                      .-.+.++.. +.   .+++|++|++++|.....+|..+..+++|++|++++|+ ++..+|.. ++.+++|+.|++++|..
T Consensus       453 ~l~~~~p~~-~~---~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          453 MLEGEIPQE-LM---YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKW-IGRLENLAILKLSNNSF  526 (768)
T ss_dssp             CCCSCCCGG-GG---GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             cccCcCCHH-Hc---CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-cCCcCChH-HhcCCCCCEEECCCCcc
Confidence            433233221 22   67888889888886666777778888899999998864 65544664 56788899999988844


Q ss_pred             chhhccccccccCCCceEeccccEEecCCCCC
Q 046857          388 MEEIIQSQVGEETEDCIVFGKLRYLELDCLPS  419 (439)
Q Consensus       388 l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~  419 (439)
                      ...++.        .+..+++|++|++++|+-
T Consensus       527 ~~~~p~--------~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          527 SGNIPA--------ELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             EEECCG--------GGGGCTTCCEEECCSSEE
T ss_pred             cCcCCH--------HHcCCCCCCEEECCCCcc
Confidence            334443        567788899998888753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=3.3e-23  Score=212.83  Aligned_cols=343  Identities=12%  Similarity=0.092  Sum_probs=189.2

Q ss_pred             ccccccccceeeccccccccc------------------cccccCcc--CCCCccEEeeccCCCccccccCCcCccCccc
Q 046857           37 NRIAFSNLKVLILDYLPRLTS------------------FCLENYTL--EFPSLERVSMTRCPNMKTFSQGIVSTPKLHE   96 (439)
Q Consensus        37 ~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~   96 (439)
                      .+..+++|++|+++++. +..                  ++  ..++  .+++|++|++++|.....+|..++++++|++
T Consensus       201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip--~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             HHhcccCCCEEECcCCc-cccccccccccccccchhcccCc--hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            34468899999999843 444                  33  3366  8999999999998777789999999999999


Q ss_pred             eeecCceeeecCcCchhhh-hhhhhhcCC------CCccEEEccCCCCceeecC--CCCCCcCccCCccEEEeccccccc
Q 046857           97 VQEEGELCRWEGNLNSTIQ-KCYEEMIGF------RDIQYLQLSHFPRLKEIWH--GQALPVRFFNYLAELEVDYCTNMS  167 (439)
Q Consensus        97 L~l~~~~~~~~~~~~~~~~-~l~~~~~~~------~~L~~L~l~~~~~l~~i~~--~~~l~~~~~~~L~~L~l~~~~~l~  167 (439)
                      |++++|..        ... .+|..+..+      ++|++|+++++. +..++.  ..    ..+++|+.|+++++ .++
T Consensus       278 L~Ls~n~~--------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l----~~l~~L~~L~L~~N-~l~  343 (636)
T 4eco_A          278 INVACNRG--------ISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL----QKMKKLGMLECLYN-QLE  343 (636)
T ss_dssp             EECTTCTT--------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHH----TTCTTCCEEECCSC-CCE
T ss_pred             EECcCCCC--------CccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhh----ccCCCCCEEeCcCC-cCc
Confidence            99998330        112 355554443      778888887654 335443  22    35677777777775 344


Q ss_pred             cccchhHHhhccccceeeeccccccchhcc-ccccc--------------cccCccccc-ccccceEecCCccccccccc
Q 046857          168 SAIPANLLRCLNNLARLEVRNCDSLEEMLH-LEELN--------------ADKEHIGPL-FPRLFSLTLIDLPKLKRFCN  231 (439)
Q Consensus       168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~--------------~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~  231 (439)
                      +.+| . +..+++|++|+++++. +..++. +....              .....+... +++|+.|+++++.-....+.
T Consensus       344 g~ip-~-~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~  420 (636)
T 4eco_A          344 GKLP-A-FGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK  420 (636)
T ss_dssp             EECC-C-CEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred             cchh-h-hCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence            3355 2 6667777777777653 322221 00000              000000000 12444555544432221111


Q ss_pred             CCC----cccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeecccccccc-ccccccCccceEee
Q 046857          232 FTG----NIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLF-DEKVAFPQLRKLRL  304 (439)
Q Consensus       232 ~~~----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~l  304 (439)
                      ...    ....+++|+.|++.++ .+..++ ..+...+++|+.|  +.+.+..++.   ...... .....+++|+.|++
T Consensus       421 ~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~~~~~~~~l~~L~~L~L  495 (636)
T 4eco_A          421 NFDPLDPTPFKGINVSSINLSNN-QISKFP-KELFSTGSPLSSINLMGNMLTEIPK---NSLKDENENFKNTYLLTSIDL  495 (636)
T ss_dssp             SSCTTCSSCCCCCCEEEEECCSS-CCCSCC-THHHHTTCCCSEEECCSSCCSBCCS---SSSEETTEECTTGGGCCEEEC
T ss_pred             hhcccccccccCCCCCEEECcCC-ccCcCC-HHHHccCCCCCEEECCCCCCCCcCH---HHhccccccccccCCccEEEC
Confidence            110    0013345666666553 333332 2223345666666  4444443221   000000 00112237777887


Q ss_pred             cCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccC-----CCcccccChhHHhhccccce
Q 046857          305 SGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKC-----HGLINVLTLSASKNLVNLGR  379 (439)
Q Consensus       305 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c-----~~l~~l~p~~~~~~l~~L~~  379 (439)
                      +++ .++.++..-.  ...+++|++|+++++. ++.+|..+..+++|+.|+++++     +++...+|.. +..+++|+.
T Consensus       496 s~N-~l~~lp~~~~--~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~  570 (636)
T 4eco_A          496 RFN-KLTKLSDDFR--ATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQ  570 (636)
T ss_dssp             CSS-CCCBCCGGGS--TTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCE
T ss_pred             cCC-cCCccChhhh--hccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCE
Confidence            775 3444443211  0156788888887764 4447777778888888888542     2333334654 456788888


Q ss_pred             EEEcccccchhhccccccccCCCceEeccccEEecCCCCCc
Q 046857          380 MKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSL  420 (439)
Q Consensus       380 L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l  420 (439)
                      |++++| .++.++.        .+.  ++|++|+++++|-.
T Consensus       571 L~Ls~N-~l~~ip~--------~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          571 LQIGSN-DIRKVNE--------KIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             EECCSS-CCCBCCS--------CCC--TTCCEEECCSCTTC
T ss_pred             EECCCC-cCCccCH--------hHh--CcCCEEECcCCCCc
Confidence            888887 4465553        222  78888888887543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=9.7e-23  Score=201.29  Aligned_cols=360  Identities=12%  Similarity=0.018  Sum_probs=207.9

Q ss_pred             cccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCC
Q 046857            9 PNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGI   88 (439)
Q Consensus         9 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~   88 (439)
                      .++|++|+|++|...+..+..+.        .+++|++|+++++.-...++ ...+..+++|++|++++|......|..+
T Consensus        29 ~~~l~~L~Ls~n~i~~~~~~~~~--------~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   99 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAELNETSFS--------RLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQFLQLETGAF   99 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTS--------SCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred             CCccCEEEecCCccCcCChhHhc--------cCccccEEECcCCcccceEC-cccccccccCCEEeCCCCccCccChhhc
Confidence            37899999999864333344444        58899999999843222221 1236678999999999975443457788


Q ss_pred             cCccCccceeecCceeeecCcCchhhhhhhhh--hcCCCCccEEEccCCCCceee-cCCCCCCcCccCCccEEEeccccc
Q 046857           89 VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE--MIGFRDIQYLQLSHFPRLKEI-WHGQALPVRFFNYLAELEVDYCTN  165 (439)
Q Consensus        89 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~i-~~~~~l~~~~~~~L~~L~l~~~~~  165 (439)
                      +.+++|++|++++|.+.         ..++..  +..+++|++|+++++. +..+ +...   ...+++|++|+++++ .
T Consensus       100 ~~l~~L~~L~L~~n~l~---------~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~~l~~L~~L~L~~n-~  165 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLD---------GAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASF---FLNMRRFHVLDLTFN-K  165 (455)
T ss_dssp             TTCTTCCEEECTTSCCB---------THHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGG---GGGCTTCCEEECTTC-C
T ss_pred             cCcccCCEEeCCCCCCC---------ccccCcccccCcccCCEEECCCCc-cCccCcccc---cCCCCcccEEeCCCC-c
Confidence            88999999999984432         122333  5578899999998765 4332 2211   136788999999886 4


Q ss_pred             cccccchhHHhhc--cccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCcc
Q 046857          166 MSSAIPANLLRCL--NNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLW  243 (439)
Q Consensus       166 l~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~  243 (439)
                      ++...+.. +..+  .+|+.|+++++. +..+................ ++|++|+++++.-....+.........++|+
T Consensus       166 l~~~~~~~-l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~  242 (455)
T 3v47_A          166 VKSICEED-LLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQ  242 (455)
T ss_dssp             BSCCCTTT-SGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred             ccccChhh-hhccccccccccccccCc-ccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhcccccccee
Confidence            55444433 4444  678888888753 33222110000000011122 6788888888743332222211112336677


Q ss_pred             EEeEecCCCcceeccc---------cc-cccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCce
Q 046857          244 SLTIENCPDMETFISN---------SV-VHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQ  311 (439)
Q Consensus       244 ~L~l~~c~~l~~~~~~---------~~-~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  311 (439)
                      .+++.++.........         .+ ....++|+.|  +.+.+.++++         .....+++|+.|+++++ .+.
T Consensus       243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~Ls~n-~l~  312 (455)
T 3v47_A          243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK---------SVFSHFTDLEQLTLAQN-EIN  312 (455)
T ss_dssp             EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT---------TTTTTCTTCCEEECTTS-CCC
T ss_pred             eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch---------hhcccCCCCCEEECCCC-ccc
Confidence            7777665322211100         00 0012345554  3444444322         12345677788887775 344


Q ss_pred             eccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhh
Q 046857          312 HLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEI  391 (439)
Q Consensus       312 ~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~  391 (439)
                      .+....+.   .+++|++|++++|..-...+..+..+++|++|+++++ +++.+.|. .+..+++|+.|+++++ .++.+
T Consensus       313 ~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~  386 (455)
T 3v47_A          313 KIDDNAFW---GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSV  386 (455)
T ss_dssp             EECTTTTT---TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCC
T ss_pred             ccChhHhc---CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccC
Confidence            44333333   6677888888777432223445567778888888775 46666444 3456778888888776 55555


Q ss_pred             ccccccccCCCceEeccccEEecCCC
Q 046857          392 IQSQVGEETEDCIVFGKLRYLELDCL  417 (439)
Q Consensus       392 ~~~~~~~~~~~~~~l~~L~~l~l~~c  417 (439)
                      +..       .+..+++|++|+++++
T Consensus       387 ~~~-------~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          387 PDG-------IFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CTT-------TTTTCTTCCEEECCSS
T ss_pred             CHh-------HhccCCcccEEEccCC
Confidence            432       3456777888877663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=5.9e-23  Score=210.93  Aligned_cols=364  Identities=13%  Similarity=0.058  Sum_probs=238.7

Q ss_pred             CCCccccCceEEEccccccce-----------------eccccccccccccccccccceeeccccccccccccccCccCC
Q 046857            5 SVGIPNSLVNLNVSYCEKIEE-----------------IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEF   67 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~-----------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l   67 (439)
                      .++++++|++|+|++|...+.                 +|..++-      ..+++|++|+++++.-...++  ..+..+
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~------~~l~~L~~L~L~~n~l~~~~p--~~l~~l  272 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW------DNLKDLTDVEVYNCPNLTKLP--TFLKAL  272 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG------GGCTTCCEEEEECCTTCSSCC--TTTTTC
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh------cccCCCCEEEecCCcCCccCh--HHHhcC
Confidence            378899999999999985442                 5544330      047899999999965444443  337789


Q ss_pred             CCccEEeeccCCCcc--ccccCCcCc------cCccceeecCceeeecCcCchhhhhhhh--hhcCCCCccEEEccCCCC
Q 046857           68 PSLERVSMTRCPNMK--TFSQGIVST------PKLHEVQEEGELCRWEGNLNSTIQKCYE--EMIGFRDIQYLQLSHFPR  137 (439)
Q Consensus        68 ~~L~~L~l~~c~~l~--~l~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~  137 (439)
                      ++|++|++++|..+.  .+|..++.+      ++|++|++++|.          +..+|.  .+..+++|+.|+++++..
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~----------l~~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN----------LKTFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC----------CSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc----------CCccCchhhhccCCCCCEEeCcCCcC
Confidence            999999999986455  488777766      899999998843          335665  667788899999886653


Q ss_pred             ceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccc-cceeeeccccccchhccc-cccc------------c
Q 046857          138 LKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNN-LARLEVRNCDSLEEMLHL-EELN------------A  203 (439)
Q Consensus       138 l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~-~~~~------------~  203 (439)
                      ...++ ..    ..+++|+.|+++++ .++ .+|.. +..+++ |++|+++++. +..++.. ....            .
T Consensus       343 ~g~ip-~~----~~l~~L~~L~L~~N-~l~-~lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          343 EGKLP-AF----GSEIKLASLNLAYN-QIT-EIPAN-FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             EEECC-CC----EEEEEESEEECCSS-EEE-ECCTT-SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred             ccchh-hh----CCCCCCCEEECCCC-ccc-cccHh-hhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCc
Confidence            32655 22    35777888888776 344 35655 666777 8888887653 3333321 0000            0


Q ss_pred             cc----Cccc-------ccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceecccccc------cccc
Q 046857          204 DK----EHIG-------PLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVV------HVTT  266 (439)
Q Consensus       204 ~~----~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~------~~~~  266 (439)
                      ..    ..+.       .. ++|+.|+++++ .+..++...  ...+++|+.|++.++ .+..++...+.      ..++
T Consensus       414 l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N-~l~~lp~~~--~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~  488 (636)
T 4eco_A          414 IGSVDGKNFDPLDPTPFKG-INVSSINLSNN-QISKFPKEL--FSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTY  488 (636)
T ss_dssp             TTTTTTCSSCTTCSSCCCC-CCEEEEECCSS-CCCSCCTHH--HHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGG
T ss_pred             CCCcchhhhcccccccccC-CCCCEEECcCC-ccCcCCHHH--HccCCCCCEEECCCC-CCCCcCHHHhccccccccccC
Confidence            00    0111       23 69999999997 455554332  235799999999996 45555443221      1223


Q ss_pred             CCCCC--CccCcceeeeecccccccccccc--ccCccceEeecCCCCceeccccCCccccccCCcceEEeec------CC
Q 046857          267 DNKEP--QKLTLEEYFLLAHQVQPLFDEKV--AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISE------CS  336 (439)
Q Consensus       267 ~L~~L--~~~~l~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~------c~  336 (439)
                      +|+.|  +.+.+..++.          ...  .+++|+.|+++++. ++.++.. +.   .+++|++|++++      +.
T Consensus       489 ~L~~L~Ls~N~l~~lp~----------~~~~~~l~~L~~L~Ls~N~-l~~ip~~-~~---~l~~L~~L~Ls~N~~ls~N~  553 (636)
T 4eco_A          489 LLTSIDLRFNKLTKLSD----------DFRATTLPYLVGIDLSYNS-FSKFPTQ-PL---NSSTLKGFGIRNQRDAQGNR  553 (636)
T ss_dssp             GCCEEECCSSCCCBCCG----------GGSTTTCTTCCEEECCSSC-CSSCCCG-GG---GCSSCCEEECCSCBCTTCCB
T ss_pred             CccEEECcCCcCCccCh----------hhhhccCCCcCEEECCCCC-CCCcChh-hh---cCCCCCEEECCCCcccccCc
Confidence            78887  6666665322          233  77899999999864 5544332 22   789999999954      44


Q ss_pred             CcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccc-cccCCCceEeccccEEecC
Q 046857          337 KLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQV-GEETEDCIVFGKLRYLELD  415 (439)
Q Consensus       337 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~~~~~~l~~L~~l~l~  415 (439)
                      ....+|..+..+++|++|++++|+ ++.+ |..+.   ++|+.|++++|+ +..+..... .........+...+..+++
T Consensus       554 l~~~~p~~l~~l~~L~~L~Ls~N~-l~~i-p~~~~---~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~  627 (636)
T 4eco_A          554 TLREWPEGITLCPSLTQLQIGSND-IRKV-NEKIT---PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIR  627 (636)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSC-CCBC-CSCCC---TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEE
T ss_pred             ccccChHHHhcCCCCCEEECCCCc-CCcc-CHhHh---CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccC
Confidence            456788889999999999999965 6776 76432   799999999994 333322110 0011133445555667888


Q ss_pred             CCCCcc
Q 046857          416 CLPSLT  421 (439)
Q Consensus       416 ~c~~l~  421 (439)
                      +||.|+
T Consensus       628 ~C~~L~  633 (636)
T 4eco_A          628 GCDALD  633 (636)
T ss_dssp             SCGGGC
T ss_pred             CCcccc
Confidence            999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=8.1e-22  Score=201.83  Aligned_cols=88  Identities=10%  Similarity=0.025  Sum_probs=47.9

Q ss_pred             CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF   84 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l   84 (439)
                      .|+++++|++|+|++|...+..+..++        .+++|++|+++++ ++..... ..+..+++|++|++++|. +..+
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~--------~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-i~~l  120 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQ--------SQHRLDTLVLTAN-PLIFMAE-TALSGPKALKHLFFIQTG-ISSI  120 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTT--------TCTTCCEEECTTC-CCSEECT-TTTSSCTTCCEEECTTSC-CSCG
T ss_pred             HhccCccceEEECCCCccceeChhhcc--------CccccCeeeCCCC-cccccCh-hhhcccccccEeeccccC-cccC
Confidence            577888888888888864443344444        3566666666662 2222211 124455566666665542 3333


Q ss_pred             -ccCCcCccCccceeecCce
Q 046857           85 -SQGIVSTPKLHEVQEEGEL  103 (439)
Q Consensus        85 -~~~~~~l~~L~~L~l~~~~  103 (439)
                       +..++.+++|++|++++|.
T Consensus       121 ~~~~~~~l~~L~~L~L~~n~  140 (606)
T 3t6q_A          121 DFIPLHNQKTLESLYLGSNH  140 (606)
T ss_dssp             GGSCCTTCTTCCEEECCSSC
T ss_pred             CcchhccCCcccEEECCCCc
Confidence             3445555555555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=1.1e-22  Score=208.31  Aligned_cols=115  Identities=17%  Similarity=0.052  Sum_probs=77.6

Q ss_pred             cccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccc-ccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857          294 VAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQK-LVPPSWHLENLWGLQVSKCHGLINVLTLSASK  372 (439)
Q Consensus       294 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~  372 (439)
                      ..+++|+.|+++++. +.......+.   .+++|++|++++|..... +|..+..+++|++|++++| +++.+.|. .+.
T Consensus       421 ~~l~~L~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~  494 (606)
T 3vq2_A          421 LSLEKLLYLDISYTN-TKIDFDGIFL---GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG-VFD  494 (606)
T ss_dssp             TTCTTCCEEECTTSC-CEECCTTTTT---TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTT
T ss_pred             hccccCCEEECcCCC-CCccchhhhc---CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChh-hhc
Confidence            355677777777764 3333323233   678888888888754442 5667778888888888886 57666444 356


Q ss_pred             hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCccee
Q 046857          373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSF  423 (439)
Q Consensus       373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~  423 (439)
                      .+++|+.|++++| .+..+...       .+..+++|++|++++|. ++.+
T Consensus       495 ~l~~L~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~L~l~~N~-l~~~  536 (606)
T 3vq2_A          495 TLHRLQLLNMSHN-NLLFLDSS-------HYNQLYSLSTLDCSFNR-IETS  536 (606)
T ss_dssp             TCTTCCEEECCSS-CCSCEEGG-------GTTTCTTCCEEECTTSC-CCCE
T ss_pred             ccccCCEEECCCC-cCCCcCHH-------HccCCCcCCEEECCCCc-Cccc
Confidence            7888889988888 55444221       56678899999998874 4443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=9.9e-23  Score=213.64  Aligned_cols=359  Identities=9%  Similarity=0.075  Sum_probs=246.8

Q ss_pred             CCCccccCceEEEccccccce-----------------eccccccccccccccccccceeeccccccccccccccCccCC
Q 046857            5 SVGIPNSLVNLNVSYCEKIEE-----------------IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEF   67 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~-----------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l   67 (439)
                      .|+++++|+.|+|++|...+.                 +|..++      +..+++|++|+++++.-...++  ..+..+
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~------f~~L~~L~~L~Ls~N~l~~~iP--~~l~~L  514 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS------WSNLKDLTDVELYNCPNMTQLP--DFLYDL  514 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC------GGGCTTCCEEEEESCTTCCSCC--GGGGGC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh------hccCCCCCEEECcCCCCCccCh--HHHhCC
Confidence            478999999999999985552                 454432      1158899999999965444444  337889


Q ss_pred             CCccEEeeccCCCcc--ccccCCcCcc-------CccceeecCceeeecCcCchhhhhhhh--hhcCCCCccEEEccCCC
Q 046857           68 PSLERVSMTRCPNMK--TFSQGIVSTP-------KLHEVQEEGELCRWEGNLNSTIQKCYE--EMIGFRDIQYLQLSHFP  136 (439)
Q Consensus        68 ~~L~~L~l~~c~~l~--~l~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~  136 (439)
                      ++|++|++++|..+.  .+|..++.++       +|++|++++|.          +..+|.  .+..+++|+.|+++++.
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~----------L~~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN----------LEEFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC----------CCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc----------CCccCChhhhhcCCCCCEEECCCCC
Confidence            999999999986465  4777666555       99999999943          335666  67789999999999776


Q ss_pred             CceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccc-cceeeeccccccchhccccccccccCccccccccc
Q 046857          137 RLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNN-LARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRL  215 (439)
Q Consensus       137 ~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L  215 (439)
                       +..++ ..    ..+++|+.|+++++. ++ .+|.. +..+++ |++|++++|. +..++..-..       ... ++|
T Consensus       585 -l~~lp-~~----~~L~~L~~L~Ls~N~-l~-~lp~~-l~~l~~~L~~L~Ls~N~-L~~lp~~~~~-------~~~-~~L  646 (876)
T 4ecn_A          585 -VRHLE-AF----GTNVKLTDLKLDYNQ-IE-EIPED-FCAFTDQVEGLGFSHNK-LKYIPNIFNA-------KSV-YVM  646 (876)
T ss_dssp             -CCBCC-CC----CTTSEESEEECCSSC-CS-CCCTT-SCEECTTCCEEECCSSC-CCSCCSCCCT-------TCS-SCE
T ss_pred             -cccch-hh----cCCCcceEEECcCCc-cc-cchHH-HhhccccCCEEECcCCC-CCcCchhhhc-------ccc-CCC
Confidence             55666 22    468999999999974 55 46766 778888 9999999874 4454431110       001 459


Q ss_pred             ceEecCCcccccccccCCC--cccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeecccccccc-
Q 046857          216 FSLTLIDLPKLKRFCNFTG--NIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLF-  290 (439)
Q Consensus       216 ~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~-  290 (439)
                      +.|+++++.-...++....  ....+++|+.|++.++ .+..+ +..+...+++|+.|  +.+.+..++.   ...... 
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~L~~ip~---~~~~~~~  721 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNLMTSIPE---NSLKPKD  721 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCCCSCCCT---TSSSCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCcCCccCh---HHhcccc
Confidence            9999998854333221110  1124568999999986 45544 33344578889988  6666665322   000000 


Q ss_pred             ccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccC-----CCcccc
Q 046857          291 DEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKC-----HGLINV  365 (439)
Q Consensus       291 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c-----~~l~~l  365 (439)
                      .....+++|+.|+++++ .+..++..-.  ...+++|+.|+++++. ++.+|..+..+++|+.|+++++     +++...
T Consensus       722 ~~l~nl~~L~~L~Ls~N-~L~~lp~~l~--~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~  797 (876)
T 4ecn_A          722 GNYKNTYLLTTIDLRFN-KLTSLSDDFR--ATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ  797 (876)
T ss_dssp             SCCTTGGGCCEEECCSS-CCCCCCGGGS--TTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred             ccccccCCccEEECCCC-CCccchHHhh--hccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCccccccccc
Confidence            01123458999999986 4665543311  0167899999999874 5568888889999999999763     234444


Q ss_pred             cChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCc
Q 046857          366 LTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSL  420 (439)
Q Consensus       366 ~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l  420 (439)
                      +|.. +..+++|+.|++++| .++.++.        .+  .++|+.|++++|+-.
T Consensus       798 ip~~-l~~L~~L~~L~Ls~N-~L~~Ip~--------~l--~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          798 WPTG-ITTCPSLIQLQIGSN-DIRKVDE--------KL--TPQLYILDIADNPNI  840 (876)
T ss_dssp             CCTT-GGGCSSCCEEECCSS-CCCBCCS--------CC--CSSSCEEECCSCTTC
T ss_pred             ChHH-HhcCCCCCEEECCCC-CCCccCH--------hh--cCCCCEEECCCCCCC
Confidence            4664 467999999999999 5576654        22  269999999999754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=1.7e-22  Score=206.79  Aligned_cols=113  Identities=19%  Similarity=0.171  Sum_probs=66.7

Q ss_pred             cccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhh
Q 046857          294 VAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKN  373 (439)
Q Consensus       294 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~  373 (439)
                      ..+++|+.|+++++.- .............+++|++|++++|......|..+..+++|++|+++++ +++...|. .+..
T Consensus       446 ~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~l~~  522 (606)
T 3t6q_A          446 DGLPALQHLNLQGNHF-PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIE-ALSH  522 (606)
T ss_dssp             TTCTTCCEEECTTCBC-GGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGG-GGTT
T ss_pred             hCCCCCCEEECCCCCC-CccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChh-HhCc
Confidence            3456777777776532 2110000011125677777777777443334556667777777777775 46655343 3456


Q ss_pred             ccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          374 LVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       374 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      +++| .|++++| .+..++..       .+..+++|++++++++|
T Consensus       523 l~~L-~L~L~~N-~l~~~~~~-------~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          523 LKGI-YLNLASN-HISIILPS-------LLPILSQQRTINLRQNP  558 (606)
T ss_dssp             CCSC-EEECCSS-CCCCCCGG-------GHHHHHTSSEEECTTCC
T ss_pred             cccc-EEECcCC-cccccCHh-------hcccCCCCCEEeCCCCC
Confidence            6777 7777777 44444321       45677888999998864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=4.5e-22  Score=197.11  Aligned_cols=323  Identities=15%  Similarity=0.214  Sum_probs=168.5

Q ss_pred             CCCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc
Q 046857            3 LGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK   82 (439)
Q Consensus         3 ~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   82 (439)
                      ++.+..+++|++|++++|. +..++. +.        .+++|++|+++++ .+...   +.+..+++|++|++++| .++
T Consensus        61 l~~~~~l~~L~~L~Ls~n~-l~~~~~-~~--------~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n-~l~  125 (466)
T 1o6v_A           61 IDGVEYLNNLTQINFSNNQ-LTDITP-LK--------NLTKLVDILMNNN-QIADI---TPLANLTNLTGLTLFNN-QIT  125 (466)
T ss_dssp             CTTGGGCTTCCEEECCSSC-CCCCGG-GT--------TCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCC
T ss_pred             CcchhhhcCCCEEECCCCc-cCCchh-hh--------ccccCCEEECCCC-ccccC---hhhcCCCCCCEEECCCC-CCC
Confidence            4556667777777777764 444433 22        4667777777773 22222   22566777777777775 455


Q ss_pred             ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecc
Q 046857           83 TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDY  162 (439)
Q Consensus        83 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~  162 (439)
                      .++. +..+++|++|++++|.+...          + .+..+++|++|++.+.  +..+.     +...+++|+.|++++
T Consensus       126 ~~~~-~~~l~~L~~L~l~~n~l~~~----------~-~~~~l~~L~~L~l~~~--~~~~~-----~~~~l~~L~~L~l~~  186 (466)
T 1o6v_A          126 DIDP-LKNLTNLNRLELSSNTISDI----------S-ALSGLTSLQQLSFGNQ--VTDLK-----PLANLTTLERLDISS  186 (466)
T ss_dssp             CCGG-GTTCTTCSEEEEEEEEECCC----------G-GGTTCTTCSEEEEEES--CCCCG-----GGTTCTTCCEEECCS
T ss_pred             CChH-HcCCCCCCEEECCCCccCCC----------h-hhccCCcccEeecCCc--ccCch-----hhccCCCCCEEECcC
Confidence            5544 66777777777776543321          1 1334566666666421  11111     113466677777666


Q ss_pred             ccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCc
Q 046857          163 CTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPML  242 (439)
Q Consensus       163 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L  242 (439)
                      +. +++ ++  .+..+++|++|++++|. +....++.           .+++|+.|+++++. ++.++    ....+++|
T Consensus       187 n~-l~~-~~--~l~~l~~L~~L~l~~n~-l~~~~~~~-----------~l~~L~~L~l~~n~-l~~~~----~l~~l~~L  245 (466)
T 1o6v_A          187 NK-VSD-IS--VLAKLTNLESLIATNNQ-ISDITPLG-----------ILTNLDELSLNGNQ-LKDIG----TLASLTNL  245 (466)
T ss_dssp             SC-CCC-CG--GGGGCTTCSEEECCSSC-CCCCGGGG-----------GCTTCCEEECCSSC-CCCCG----GGGGCTTC
T ss_pred             Cc-CCC-Ch--hhccCCCCCEEEecCCc-cccccccc-----------ccCCCCEEECCCCC-cccch----hhhcCCCC
Confidence            53 433 22  15556667777766653 22222111           12666666666652 33321    12355666


Q ss_pred             cEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcc
Q 046857          243 WSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDES  320 (439)
Q Consensus       243 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~  320 (439)
                      +.|++.++. +...++   ...+++|+.|  +.+.+..+.           ....+++|+.|+++++. +..+..  +  
T Consensus       246 ~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~-----------~~~~l~~L~~L~L~~n~-l~~~~~--~--  305 (466)
T 1o6v_A          246 TDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQISNIS-----------PLAGLTALTNLELNENQ-LEDISP--I--  305 (466)
T ss_dssp             SEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCCCCCG-----------GGTTCTTCSEEECCSSC-CSCCGG--G--
T ss_pred             CEEECCCCc-cccchh---hhcCCCCCEEECCCCccCccc-----------cccCCCccCeEEcCCCc-ccCchh--h--
Confidence            666666642 333322   2455566655  334444321           13345666666666642 332211  1  


Q ss_pred             ccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccC
Q 046857          321 NKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEET  400 (439)
Q Consensus       321 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  400 (439)
                       ..+++|++|++++|. ++.+++ +..+++|++|++++| .++.+ +  .+..+++|+.|++++| .+.+..        
T Consensus       306 -~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~l~~n-~l~~~~--------  369 (466)
T 1o6v_A          306 -SNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDV-S--SLANLTNINWLSAGHN-QISDLT--------  369 (466)
T ss_dssp             -GGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCC-G--GGTTCTTCCEEECCSS-CCCBCG--------
T ss_pred             -cCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-ccCCc-h--hhccCCCCCEEeCCCC-ccCccc--------
Confidence             156666666666663 333322 456666666666664 35544 2  2345666666666666 332221        


Q ss_pred             CCceEeccccEEecCCC
Q 046857          401 EDCIVFGKLRYLELDCL  417 (439)
Q Consensus       401 ~~~~~l~~L~~l~l~~c  417 (439)
                       .+..+++|+.|++++|
T Consensus       370 -~~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          370 -PLANLTRITQLGLNDQ  385 (466)
T ss_dssp             -GGTTCTTCCEEECCCE
T ss_pred             -hhhcCCCCCEEeccCC
Confidence             2345566666666665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=2.3e-22  Score=210.92  Aligned_cols=343  Identities=13%  Similarity=0.060  Sum_probs=219.9

Q ss_pred             ccccccccceeeccccccccc------------------cccccCcc--CCCCccEEeeccCCCccccccCCcCccCccc
Q 046857           37 NRIAFSNLKVLILDYLPRLTS------------------FCLENYTL--EFPSLERVSMTRCPNMKTFSQGIVSTPKLHE   96 (439)
Q Consensus        37 ~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~   96 (439)
                      .+..+++|++|+++++. +..                  ++  ..++  .+++|++|++++|.....+|..++.+++|++
T Consensus       443 ~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP--~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             HHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCC--hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            34468899999998842 333                  22  3345  7899999999998777788888889999999


Q ss_pred             eeecCce-eeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC--CCCCCcCccCCccEEEeccccccccccchh
Q 046857           97 VQEEGEL-CRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH--GQALPVRFFNYLAELEVDYCTNMSSAIPAN  173 (439)
Q Consensus        97 L~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~  173 (439)
                      |++++|. +.. ..+...+..++..+..+++|+.|+++++. +..+|.  ..    ..+++|+.|+++++. ++ .+| .
T Consensus       520 L~Ls~N~~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l----~~L~~L~~L~Ls~N~-l~-~lp-~  590 (876)
T 4ecn_A          520 LNIACNRGISA-AQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASL----QKMVKLGLLDCVHNK-VR-HLE-A  590 (876)
T ss_dssp             EECTTCTTSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHH----TTCTTCCEEECTTSC-CC-BCC-C
T ss_pred             EECcCCCCccc-ccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhh----hcCCCCCEEECCCCC-cc-cch-h
Confidence            9998843 210 00011112222122345589999998765 446554  22    468889999998864 55 356 3


Q ss_pred             HHhhccccceeeeccccccchhccccccccccCcccccccc-cceEecCCcccccccccCCCcccCCCCccEEeEecCCC
Q 046857          174 LLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPR-LFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPD  252 (439)
Q Consensus       174 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~  252 (439)
                       ++.+++|++|+++++. +..++.         .+..+ ++ |+.|+++++. +..++.... ....++|+.|++.++. 
T Consensus       591 -~~~L~~L~~L~Ls~N~-l~~lp~---------~l~~l-~~~L~~L~Ls~N~-L~~lp~~~~-~~~~~~L~~L~Ls~N~-  655 (876)
T 4ecn_A          591 -FGTNVKLTDLKLDYNQ-IEEIPE---------DFCAF-TDQVEGLGFSHNK-LKYIPNIFN-AKSVYVMGSVDFSYNK-  655 (876)
T ss_dssp             -CCTTSEESEEECCSSC-CSCCCT---------TSCEE-CTTCCEEECCSSC-CCSCCSCCC-TTCSSCEEEEECCSSC-
T ss_pred             -hcCCCcceEEECcCCc-cccchH---------HHhhc-cccCCEEECcCCC-CCcCchhhh-ccccCCCCEEECcCCc-
Confidence             7888999999999764 334332         12223 77 9999999875 556654332 2233459999998864 


Q ss_pred             cceeccc----cccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcc----cc
Q 046857          253 METFISN----SVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDES----NK  322 (439)
Q Consensus       253 l~~~~~~----~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~----~~  322 (439)
                      +...++.    .....+++|+.|  +.+.+..++.         .....+++|+.|+++++ .+..++...+..    .+
T Consensus       656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~---------~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~  725 (876)
T 4ecn_A          656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT---------ELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYK  725 (876)
T ss_dssp             TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH---------HHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCT
T ss_pred             CCCccccchhhhccccCCCcCEEEccCCcCCccCH---------HHHccCCCCCEEECCCC-cCCccChHHhcccccccc
Confidence            3222111    011134467766  5555554321         01125689999999986 566665443221    11


Q ss_pred             ccCCcceEEeecCCCcccccCCCc--cCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccC
Q 046857          323 VFANLERLEISECSKLQKLVPPSW--HLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEET  400 (439)
Q Consensus       323 ~~~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  400 (439)
                      .+++|++|++++| .++.+|..+.  .+++|+.|+++++ .++.+ |.. +..+++|+.|++++++.+..-..  .+..+
T Consensus       726 nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~-l~~L~~L~~L~Ls~N~~ls~N~l--~~~ip  799 (876)
T 4ecn_A          726 NTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSF-PTQ-PLNSSQLKAFGIRHQRDAEGNRI--LRQWP  799 (876)
T ss_dssp             TGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSC-CCG-GGGCTTCCEEECCCCBCTTCCBC--CCCCC
T ss_pred             ccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCcc-chh-hhcCCCCCEEECCCCCCcccccc--cccCh
Confidence            3449999999998 5668888776  8999999999985 57775 765 45899999999987542111100  11122


Q ss_pred             CCceEeccccEEecCCCCCccee
Q 046857          401 EDCIVFGKLRYLELDCLPSLTSF  423 (439)
Q Consensus       401 ~~~~~l~~L~~l~l~~c~~l~~~  423 (439)
                      ..+.++++|++|++++|.- +.+
T Consensus       800 ~~l~~L~~L~~L~Ls~N~L-~~I  821 (876)
T 4ecn_A          800 TGITTCPSLIQLQIGSNDI-RKV  821 (876)
T ss_dssp             TTGGGCSSCCEEECCSSCC-CBC
T ss_pred             HHHhcCCCCCEEECCCCCC-Ccc
Confidence            3677899999999998854 443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=9.9e-22  Score=187.01  Aligned_cols=106  Identities=15%  Similarity=0.132  Sum_probs=76.6

Q ss_pred             ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857          293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK  372 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~  372 (439)
                      ...+++|+.|+++++ .++.+.  .+   ..+++|++|++++| .++.++ .+..+++|++|++++| .++...+ ..+.
T Consensus       239 ~~~l~~L~~L~l~~n-~l~~~~--~~---~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~l~  308 (347)
T 4fmz_A          239 LANLSQLTWLEIGTN-QISDIN--AV---KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN-QLGNEDM-EVIG  308 (347)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCG--GG---TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCGGGH-HHHH
T ss_pred             hhcCCCCCEEECCCC-ccCCCh--hH---hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCcCh-hHhh
Confidence            446778999998886 344432  12   27889999999888 455553 4678899999999987 4666534 3466


Q ss_pred             hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      .+++|+.|++++| .++.+.         .+..+++|+++++++|+
T Consensus       309 ~l~~L~~L~L~~n-~l~~~~---------~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          309 GLTNLTTLFLSQN-HITDIR---------PLASLSKMDSADFANQV  344 (347)
T ss_dssp             TCTTCSEEECCSS-SCCCCG---------GGGGCTTCSEESSSCC-
T ss_pred             ccccCCEEEccCC-cccccc---------Chhhhhccceeehhhhc
Confidence            8899999999998 455443         35668899999998875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=4.9e-22  Score=203.42  Aligned_cols=355  Identities=15%  Similarity=0.030  Sum_probs=205.6

Q ss_pred             CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc-c
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK-T   83 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~   83 (439)
                      .|+++++|++|+|++|......+..++        .+++|++|+++++ ++...+.. .+..+++|++|++++|.... .
T Consensus        75 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~--------~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~  144 (606)
T 3vq2_A           75 AWHGLHHLSNLILTGNPIQSFSPGSFS--------GLTSLENLVAVET-KLASLESF-PIGQLITLKKLNVAHNFIHSCK  144 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCCCCTTSST--------TCTTCCEEECTTS-CCCCSSSS-CCTTCTTCCEEECCSSCCCCCC
T ss_pred             HhhchhhcCEeECCCCcccccChhhcC--------CcccCCEEEccCC-cccccccc-ccCCCCCCCEEeCCCCccccee
Confidence            478899999999999974444455555        5789999999883 33333222 26778889999998874332 4


Q ss_pred             cccCCcCccCccceeecCceeeecCc--C----------------chhhhhhhhhhcCCCCccEEEccCCCC--------
Q 046857           84 FSQGIVSTPKLHEVQEEGELCRWEGN--L----------------NSTIQKCYEEMIGFRDIQYLQLSHFPR--------  137 (439)
Q Consensus        84 l~~~~~~l~~L~~L~l~~~~~~~~~~--~----------------~~~~~~l~~~~~~~~~L~~L~l~~~~~--------  137 (439)
                      +|..++.+++|++|+++++.+.....  +                .+.+..++.......+|++|+++++..        
T Consensus       145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~  224 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC  224 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHH
T ss_pred             chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHH
Confidence            68888888899999888875443211  0                001111222222223455555544321        


Q ss_pred             ------------------------------------------------------------------------ceeecCCC
Q 046857          138 ------------------------------------------------------------------------LKEIWHGQ  145 (439)
Q Consensus       138 ------------------------------------------------------------------------l~~i~~~~  145 (439)
                                                                                              +..++ . 
T Consensus       225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~-  302 (606)
T 3vq2_A          225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-D-  302 (606)
T ss_dssp             HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-C-
T ss_pred             hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-h-
Confidence                                                                                    11111 0 


Q ss_pred             CCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc-
Q 046857          146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP-  224 (439)
Q Consensus       146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-  224 (439)
                         ...+++|++|++.+|.. +. +| . + .+++|++|+++++..+... .          ...+ ++|+.|+++++. 
T Consensus       303 ---l~~~~~L~~L~l~~n~l-~~-lp-~-~-~l~~L~~L~l~~n~~~~~~-~----------~~~l-~~L~~L~ls~n~l  362 (606)
T 3vq2_A          303 ---VPKHFKWQSLSIIRCQL-KQ-FP-T-L-DLPFLKSLTLTMNKGSISF-K----------KVAL-PSLSYLDLSRNAL  362 (606)
T ss_dssp             ---CCTTCCCSEEEEESCCC-SS-CC-C-C-CCSSCCEEEEESCSSCEEC-C----------CCCC-TTCCEEECCSSCE
T ss_pred             ---ccccccCCEEEcccccC-cc-cc-c-C-CCCccceeeccCCcCccch-h----------hccC-CCCCEEECcCCcc
Confidence               11344555555555532 22 34 2 2 4555555555554322211 0          0112 444555444432 


Q ss_pred             ------------------------cccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcce
Q 046857          225 ------------------------KLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEE  278 (439)
Q Consensus       225 ------------------------~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~  278 (439)
                                              .+..++...   ..+++|+.|++.++ .+...++......+++|+.|  +.+.+..
T Consensus       363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  438 (606)
T 3vq2_A          363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF---MGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKI  438 (606)
T ss_dssp             EEEEECCHHHHCCSCCCEEECCSCSEEEECCCC---TTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred             CCCcchhhhhccCCcccEeECCCCccccchhhc---cCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCc
Confidence                                    122222111   24455555555553 22222222223455555555  3333433


Q ss_pred             eeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEcc
Q 046857          279 YFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSK  358 (439)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  358 (439)
                      ..+         .....+++|+.|+++++.-........+.   .+++|++|++++|......|..+..+++|++|++++
T Consensus       439 ~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          439 DFD---------GIFLGLTSLNTLKMAGNSFKDNTLSNVFA---NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             CCT---------TTTTTCTTCCEEECTTCEEGGGEECSCCT---TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cch---------hhhcCCCCCCEEECCCCcCCCcchHHhhc---cCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            221         23456789999999987432212222233   789999999999965555566778999999999999


Q ss_pred             CCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEec-cccEEecCCCC
Q 046857          359 CHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFG-KLRYLELDCLP  418 (439)
Q Consensus       359 c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~-~L~~l~l~~c~  418 (439)
                      | +++.++|. .+..+++|+.|++++| .++.++.        .+..++ +|++++++++|
T Consensus       507 N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~p~--------~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          507 N-NLLFLDSS-HYNQLYSLSTLDCSFN-RIETSKG--------ILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             S-CCSCEEGG-GTTTCTTCCEEECTTS-CCCCEES--------CGGGSCTTCCEEECCSCC
T ss_pred             C-cCCCcCHH-HccCCCcCCEEECCCC-cCcccCH--------hHhhhcccCcEEEccCCC
Confidence            6 57777555 4578999999999999 5777664        466676 59999998854

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=1.5e-21  Score=198.30  Aligned_cols=226  Identities=18%  Similarity=0.138  Sum_probs=132.8

Q ss_pred             ccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccc
Q 046857          151 FFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFC  230 (439)
Q Consensus       151 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  230 (439)
                      .+++|+.|++.++. ++. +|.. +..+ +|++|++.+|. +..++..            .+++|+.|++.++.....++
T Consensus       280 ~l~~L~~L~l~~~~-l~~-l~~~-~~~~-~L~~L~l~~n~-~~~l~~~------------~l~~L~~L~l~~n~~~~~~~  342 (570)
T 2z63_A          280 CLTNVSSFSLVSVT-IER-VKDF-SYNF-GWQHLELVNCK-FGQFPTL------------KLKSLKRLTFTSNKGGNAFS  342 (570)
T ss_dssp             GGTTCSEEEEESCE-ECS-CCBC-CSCC-CCSEEEEESCB-CSSCCBC------------BCSSCCEEEEESCBSCCBCC
T ss_pred             CcCcccEEEecCcc-chh-hhhh-hccC-CccEEeeccCc-ccccCcc------------cccccCEEeCcCCccccccc
Confidence            46788889888863 443 4554 5556 88888888764 3333220            12444444444443222111


Q ss_pred             c---------------------CCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccc
Q 046857          231 N---------------------FTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQ  287 (439)
Q Consensus       231 ~---------------------~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~  287 (439)
                      .                     .......+++|+.|++.++ .+..+++.  ...+++|+.|  +.+.+....+      
T Consensus       343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~------  413 (570)
T 2z63_A          343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSNLKQMSE------  413 (570)
T ss_dssp             CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSEEESCTT------
T ss_pred             cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-cccccccc--ccccCCCCEEEccCCccccccc------
Confidence            1                     0001124455555555553 23332221  2344555554  2222222110      


Q ss_pred             cccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCc-ccccCCCccCCCcceEEEccCCCccccc
Q 046857          288 PLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKL-QKLVPPSWHLENLWGLQVSKCHGLINVL  366 (439)
Q Consensus       288 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~  366 (439)
                        ......+++|++|+++++. +.......+.   .+++|++|++++|... ..+|..+..+++|++|++++| +++.+.
T Consensus       414 --~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~  486 (570)
T 2z63_A          414 --FSVFLSLRNLIYLDISHTH-TRVAFNGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLS  486 (570)
T ss_dssp             --SCTTTTCTTCCEEECTTSC-CEECCTTTTT---TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC
T ss_pred             --hhhhhcCCCCCEEeCcCCc-ccccchhhhh---cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCC
Confidence              0123456788888888864 4443333233   6889999999988654 357788888999999999986 477764


Q ss_pred             ChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          367 TLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       367 p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      |. .+..+++|+.|++++| .++.++..       .+..+++|++++++++|
T Consensus       487 ~~-~~~~l~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          487 PT-AFNSLSSLQVLNMASN-QLKSVPDG-------IFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TT-TTTTCTTCCEEECCSS-CCSCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred             hh-hhhcccCCCEEeCCCC-cCCCCCHH-------HhhcccCCcEEEecCCc
Confidence            54 3567899999999988 66665432       46678899999998853

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=1.6e-21  Score=198.03  Aligned_cols=109  Identities=18%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             ccCccceEeecCCCCceeccc-cCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcc-cccChhHHh
Q 046857          295 AFPQLRKLRLSGLHKVQHLWK-ENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLI-NVLTLSASK  372 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~l~p~~~~~  372 (439)
                      .+++|+.|+++++. +..... ..+.   .+++|++|++++|......+..+..+++|++|++++|. ++ ..+|. .+.
T Consensus       394 ~l~~L~~L~l~~n~-l~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~-~~~  467 (570)
T 2z63_A          394 GLEQLEHLDFQHSN-LKQMSEFSVFL---SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPD-IFT  467 (570)
T ss_dssp             TCTTCCEEECTTSE-EESCTTSCTTT---TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECS-CCT
T ss_pred             ccCCCCEEEccCCc-cccccchhhhh---cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-Cccccchh-hhh
Confidence            44566666666542 222211 1122   56777888887775555555666677888888887764 43 22354 345


Q ss_pred             hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857          373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL  417 (439)
Q Consensus       373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c  417 (439)
                      .+++|+.|++++| .++.+...       .+..+++|++|++++|
T Consensus       468 ~l~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          468 ELRNLTFLDLSQC-QLEQLSPT-------AFNSLSSLQVLNMASN  504 (570)
T ss_dssp             TCTTCCEEECTTS-CCCEECTT-------TTTTCTTCCEEECCSS
T ss_pred             cccCCCEEECCCC-ccccCChh-------hhhcccCCCEEeCCCC
Confidence            6778888888877 44444221       4566788888888775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.88  E-value=9.5e-22  Score=198.90  Aligned_cols=78  Identities=23%  Similarity=0.200  Sum_probs=54.0

Q ss_pred             CCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCce
Q 046857          325 ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCI  404 (439)
Q Consensus       325 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  404 (439)
                      ++|++|++++| .++.+   ...+++|++|+++++ +++.+ |.  ...+++|+.|+++++ .++.++..       .+.
T Consensus       431 ~~L~~L~Ls~N-~l~~~---~~~l~~L~~L~Ls~N-~l~~i-p~--~~~l~~L~~L~Ls~N-~l~~~~~~-------~~~  494 (549)
T 2z81_A          431 QTLEVLDVSNN-NLDSF---SLFLPRLQELYISRN-KLKTL-PD--ASLFPVLLVMKISRN-QLKSVPDG-------IFD  494 (549)
T ss_dssp             TTCSEEECCSS-CCSCC---CCCCTTCCEEECCSS-CCSSC-CC--GGGCTTCCEEECCSS-CCCCCCTT-------GGG
T ss_pred             CCceEEECCCC-Chhhh---cccCChhcEEECCCC-ccCcC-CC--cccCccCCEEecCCC-ccCCcCHH-------HHh
Confidence            45666666655 23333   246888999999885 57765 65  246889999999887 66555432       467


Q ss_pred             EeccccEEecCCCC
Q 046857          405 VFGKLRYLELDCLP  418 (439)
Q Consensus       405 ~l~~L~~l~l~~c~  418 (439)
                      .+++|++++++++|
T Consensus       495 ~l~~L~~L~l~~N~  508 (549)
T 2z81_A          495 RLTSLQKIWLHTNP  508 (549)
T ss_dssp             GCTTCCEEECCSSC
T ss_pred             cCcccCEEEecCCC
Confidence            78899999998875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.86  E-value=9.7e-21  Score=187.50  Aligned_cols=319  Identities=15%  Similarity=0.184  Sum_probs=226.0

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      .+++|+.|++.+|. +..++. +.        .+++|++|+++++ .+.++   +.+..+++|++|++++| .+..++. 
T Consensus        44 ~l~~l~~L~l~~~~-i~~l~~-~~--------~l~~L~~L~Ls~n-~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~~-  107 (466)
T 1o6v_A           44 DLDQVTTLQADRLG-IKSIDG-VE--------YLNNLTQINFSNN-QLTDI---TPLKNLTKLVDILMNNN-QIADITP-  107 (466)
T ss_dssp             HHHTCCEEECCSSC-CCCCTT-GG--------GCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCCGG-
T ss_pred             HhccccEEecCCCC-CccCcc-hh--------hhcCCCEEECCCC-ccCCc---hhhhccccCCEEECCCC-ccccChh-
Confidence            36789999999885 444443 22        5889999999994 34444   33778999999999997 4565655 


Q ss_pred             CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857           88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS  167 (439)
Q Consensus        88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~  167 (439)
                      ++.+++|++|++++|.+..          ++. +..+++|++|+++++. +..++.     ...+++|+.|++.+  .+.
T Consensus       108 ~~~l~~L~~L~L~~n~l~~----------~~~-~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~--~~~  168 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITD----------IDP-LKNLTNLNRLELSSNT-ISDISA-----LSGLTSLQQLSFGN--QVT  168 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCC----------CGG-GTTCTTCSEEEEEEEE-ECCCGG-----GTTCTTCSEEEEEE--SCC
T ss_pred             hcCCCCCCEEECCCCCCCC----------ChH-HcCCCCCCEEECCCCc-cCCChh-----hccCCcccEeecCC--ccc
Confidence            8889999999999854332          221 4568999999999765 444332     14688999999964  344


Q ss_pred             cccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeE
Q 046857          168 SAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTI  247 (439)
Q Consensus       168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l  247 (439)
                      .. +.  +..+++|++|+++++. +..+..+          ..+ ++|++|+++++. +..+..    ...+++|+.|++
T Consensus       169 ~~-~~--~~~l~~L~~L~l~~n~-l~~~~~l----------~~l-~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l  228 (466)
T 1o6v_A          169 DL-KP--LANLTTLERLDISSNK-VSDISVL----------AKL-TNLESLIATNNQ-ISDITP----LGILTNLDELSL  228 (466)
T ss_dssp             CC-GG--GTTCTTCCEEECCSSC-CCCCGGG----------GGC-TTCSEEECCSSC-CCCCGG----GGGCTTCCEEEC
T ss_pred             Cc-hh--hccCCCCCEEECcCCc-CCCChhh----------ccC-CCCCEEEecCCc-cccccc----ccccCCCCEEEC
Confidence            32 22  7789999999999874 4433221          223 899999999884 333321    236799999999


Q ss_pred             ecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccC
Q 046857          248 ENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFA  325 (439)
Q Consensus       248 ~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~  325 (439)
                      .++ .+..++   ....+++|+.|  +.+.+.++.           ....+++|+.|+++++. +..+..  +   ..++
T Consensus       229 ~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~-----------~~~~l~~L~~L~l~~n~-l~~~~~--~---~~l~  287 (466)
T 1o6v_A          229 NGN-QLKDIG---TLASLTNLTDLDLANNQISNLA-----------PLSGLTKLTELKLGANQ-ISNISP--L---AGLT  287 (466)
T ss_dssp             CSS-CCCCCG---GGGGCTTCSEEECCSSCCCCCG-----------GGTTCTTCSEEECCSSC-CCCCGG--G---TTCT
T ss_pred             CCC-Ccccch---hhhcCCCCCEEECCCCccccch-----------hhhcCCCCCEEECCCCc-cCcccc--c---cCCC
Confidence            986 344442   24578888888  555555532           25577899999999863 444322  2   2789


Q ss_pred             CcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceE
Q 046857          326 NLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIV  405 (439)
Q Consensus       326 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  405 (439)
                      +|++|++++|. ++.++. +..+++|++|++++| +++++.|   ...+++|+.|++++| .+..+.         .+..
T Consensus       288 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~---------~l~~  351 (466)
T 1o6v_A          288 ALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS---------SLAN  351 (466)
T ss_dssp             TCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG---------GGTT
T ss_pred             ccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch---------hhcc
Confidence            99999999974 555544 678999999999997 4777634   468899999999998 565542         5667


Q ss_pred             eccccEEecCCCC
Q 046857          406 FGKLRYLELDCLP  418 (439)
Q Consensus       406 l~~L~~l~l~~c~  418 (439)
                      +++|++|++++|+
T Consensus       352 l~~L~~L~l~~n~  364 (466)
T 1o6v_A          352 LTNINWLSAGHNQ  364 (466)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEeCCCCc
Confidence            8999999988763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=2.3e-20  Score=180.44  Aligned_cols=107  Identities=20%  Similarity=0.173  Sum_probs=71.9

Q ss_pred             ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857          293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK  372 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~  372 (439)
                      ...+++|+.|+++++ .++.+....+.   .+++|++|+++++ .++.++.....+++|++|++++| +++.+ |.. ..
T Consensus       244 l~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~-~~  315 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYN-ELEKIMYHPFV---KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHV-ERN-QP  315 (390)
T ss_dssp             GGGCTTCSEEECCSS-CCCEEESGGGT---TCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCC-GGG-HH
T ss_pred             HcCCCCccEEECCCC-cCCCcChhHcc---ccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceec-Ccc-cc
Confidence            456678888888775 34444333233   6778888888776 46667776677888888888876 46665 443 35


Q ss_pred             hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      .+++|+.|++++| .++.+          .+..+++|++|+++++|
T Consensus       316 ~l~~L~~L~L~~N-~i~~~----------~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          316 QFDRLENLYLDHN-SIVTL----------KLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             HHTTCSEEECCSS-CCCCC----------CCCTTCCCSEEECCSSC
T ss_pred             ccCcCCEEECCCC-cccee----------CchhhccCCEEEcCCCC
Confidence            6788888888887 45444          23456778888887753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=1.8e-20  Score=186.16  Aligned_cols=88  Identities=17%  Similarity=0.013  Sum_probs=63.4

Q ss_pred             ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857          293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK  372 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~  372 (439)
                      ...+++|+.|+++++. ++.+....+.   .+++|++|+++++......+..+..+++|++|+++++ +++.+ +...+.
T Consensus       244 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~  317 (477)
T 2id5_A          244 VRHLVYLRFLNLSYNP-ISTIEGSMLH---ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTL-EESVFH  317 (477)
T ss_dssp             HTTCTTCCEEECCSSC-CCEECTTSCT---TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCC-CGGGBS
T ss_pred             hcCccccCeeECCCCc-CCccChhhcc---ccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCcee-CHhHcC
Confidence            3456788888888763 5555544343   7788999999887544444566678889999999885 57776 555566


Q ss_pred             hccccceEEEcccc
Q 046857          373 NLVNLGRMKIVDCK  386 (439)
Q Consensus       373 ~l~~L~~L~l~~c~  386 (439)
                      .+++|+.|++++++
T Consensus       318 ~l~~L~~L~l~~N~  331 (477)
T 2id5_A          318 SVGNLETLILDSNP  331 (477)
T ss_dssp             CGGGCCEEECCSSC
T ss_pred             CCcccCEEEccCCC
Confidence            78889999888763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=2.9e-20  Score=192.89  Aligned_cols=229  Identities=15%  Similarity=0.134  Sum_probs=127.2

Q ss_pred             CCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccC
Q 046857          153 NYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNF  232 (439)
Q Consensus       153 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  232 (439)
                      ++|+.|+++++ .++...+. .+..+++|++|+++++.....++. .       .+..+ ++|+.|+++++.- ..+...
T Consensus       381 ~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~-~-------~~~~l-~~L~~L~Ls~n~l-~~~~~~  448 (680)
T 1ziw_A          381 SPLHILNLTKN-KISKIESD-AFSWLGHLEVLDLGLNEIGQELTG-Q-------EWRGL-ENIFEIYLSYNKY-LQLTRN  448 (680)
T ss_dssp             SCCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCEEECCS-G-------GGTTC-TTCCEEECCSCSE-EECCTT
T ss_pred             CcCceEECCCC-CCCeEChh-hhhCCCCCCEEeCCCCcCccccCc-c-------cccCc-ccccEEecCCCCc-ceeChh
Confidence            34555555554 23333232 255566666666666532222211 0       01112 6677777776642 222111


Q ss_pred             CCcccCCCCccEEeEecCCCccee-ccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCC
Q 046857          233 TGNIIEMPMLWSLTIENCPDMETF-ISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHK  309 (439)
Q Consensus       233 ~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  309 (439)
                      .  ...+++|+.|++.++. +... ........+++|+.|  +.+.+..+++         .....+++|+.|+++++ .
T Consensus       449 ~--~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~---------~~~~~l~~L~~L~Ls~N-~  515 (680)
T 1ziw_A          449 S--FALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNNIANIND---------DMLEGLEKLEILDLQHN-N  515 (680)
T ss_dssp             T--TTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSS-C
T ss_pred             h--hhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCCCCCcCCh---------hhhccccccCEEeCCCC-C
Confidence            1  1256777777776643 2211 011123456667766  4555555332         12345678888888875 3


Q ss_pred             ceeccccCC-----ccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEc
Q 046857          310 VQHLWKEND-----ESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV  383 (439)
Q Consensus       310 l~~l~~~~~-----~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~  383 (439)
                      ++.++...+     .....+++|+.|+++++ .++.+|.. +..+++|+.|++++ ++++.+ |...+..+++|+.|+++
T Consensus       516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l-~~~~~~~l~~L~~L~L~  592 (680)
T 1ziw_A          516 LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGL-NNLNTL-PASVFNNQVSLKSLNLQ  592 (680)
T ss_dssp             CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECT
T ss_pred             ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCC-CCCCcC-CHhHhCCCCCCCEEECC
Confidence            444432210     01126778888888876 45567654 56788888888876 467776 55555677888888888


Q ss_pred             ccccchhhccccccccCCCce-EeccccEEecCCC
Q 046857          384 DCKMMEEIIQSQVGEETEDCI-VFGKLRYLELDCL  417 (439)
Q Consensus       384 ~c~~l~~~~~~~~~~~~~~~~-~l~~L~~l~l~~c  417 (439)
                      ++ .++.+...       .+. .+++|++++++++
T Consensus       593 ~N-~l~~~~~~-------~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          593 KN-LITSVEKK-------VFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             TS-CCCBCCHH-------HHHHHHTTCSEEECTTC
T ss_pred             CC-cCCccChh-------HhcccccccCEEEccCC
Confidence            87 55555431       233 5678888888774

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=2.1e-20  Score=177.82  Aligned_cols=303  Identities=15%  Similarity=0.151  Sum_probs=222.0

Q ss_pred             CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF   84 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l   84 (439)
                      .+..+++|++|++.+|. +..++. +.        .+++|++|+++++ ++.++   +.+..+++|++|++++| .++.+
T Consensus        39 ~~~~l~~L~~L~l~~~~-i~~~~~-~~--------~~~~L~~L~l~~n-~i~~~---~~~~~l~~L~~L~L~~n-~i~~~  103 (347)
T 4fmz_A           39 TQEELESITKLVVAGEK-VASIQG-IE--------YLTNLEYLNLNGN-QITDI---SPLSNLVKLTNLYIGTN-KITDI  103 (347)
T ss_dssp             CHHHHTTCSEEECCSSC-CCCCTT-GG--------GCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCC
T ss_pred             cchhcccccEEEEeCCc-cccchh-hh--------hcCCccEEEccCC-ccccc---hhhhcCCcCCEEEccCC-cccCc
Confidence            34578899999999986 444443 32        5899999999994 44444   33778999999999997 56667


Q ss_pred             ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857           85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT  164 (439)
Q Consensus        85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~  164 (439)
                      + .+..+++|++|+++++.+.          .++. +..+++|++|+++++.....++.     ...+++|++|++.+|.
T Consensus       104 ~-~~~~l~~L~~L~l~~n~i~----------~~~~-~~~l~~L~~L~l~~n~~~~~~~~-----~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A          104 S-ALQNLTNLRELYLNEDNIS----------DISP-LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESK  166 (347)
T ss_dssp             G-GGTTCTTCSEEECTTSCCC----------CCGG-GTTCTTCCEEECTTCTTCCCCGG-----GTTCTTCCEEECCSSC
T ss_pred             h-HHcCCCcCCEEECcCCccc----------Cchh-hccCCceeEEECCCCCCcccccc-----hhhCCCCcEEEecCCC
Confidence            5 4788999999999995533          2222 45689999999998876665433     1468999999999974


Q ss_pred             ccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccE
Q 046857          165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWS  244 (439)
Q Consensus       165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~  244 (439)
                       +... +.  +..+++|++|++++| .+..+..+.          .+ ++|+.|++.++. +..+..    ...+++|+.
T Consensus       167 -~~~~-~~--~~~l~~L~~L~l~~n-~l~~~~~~~----------~l-~~L~~L~l~~n~-l~~~~~----~~~~~~L~~  225 (347)
T 4fmz_A          167 -VKDV-TP--IANLTDLYSLSLNYN-QIEDISPLA----------SL-TSLHYFTAYVNQ-ITDITP----VANMTRLNS  225 (347)
T ss_dssp             -CCCC-GG--GGGCTTCSEEECTTS-CCCCCGGGG----------GC-TTCCEEECCSSC-CCCCGG----GGGCTTCCE
T ss_pred             -cCCc-hh--hccCCCCCEEEccCC-ccccccccc----------CC-CccceeecccCC-CCCCch----hhcCCcCCE
Confidence             5442 32  678999999999987 344433221          13 899999999874 433322    347899999


Q ss_pred             EeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcccc
Q 046857          245 LTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNK  322 (439)
Q Consensus       245 L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  322 (439)
                      |++.+| .+...++   ...+++|+.|  +.+.+..+           .....+++|+.|+++++ .++.+.  .+   .
T Consensus       226 L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~l~~n-~l~~~~--~~---~  284 (347)
T 4fmz_A          226 LKIGNN-KITDLSP---LANLSQLTWLEIGTNQISDI-----------NAVKDLTKLKMLNVGSN-QISDIS--VL---N  284 (347)
T ss_dssp             EECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCC-----------GGGTTCTTCCEEECCSS-CCCCCG--GG---G
T ss_pred             EEccCC-ccCCCcc---hhcCCCCCEEECCCCccCCC-----------hhHhcCCCcCEEEccCC-ccCCCh--hh---c
Confidence            999996 4555443   4678888888  55555553           13567889999999987 455542  12   2


Q ss_pred             ccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857          323 VFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       323 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c  385 (439)
                      .+++|++|++++|......+..+..+++|++|++++|+ ++.+.|   ...+++|+.|++++|
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQ  343 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhh
Confidence            78999999999996554555666789999999999975 777644   468899999999998

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=6.3e-20  Score=181.10  Aligned_cols=335  Identities=16%  Similarity=0.069  Sum_probs=222.3

Q ss_pred             CCCccccCceEEEccccccceecc-ccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccc
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIG-HVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT   83 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~   83 (439)
                      .|+++++|++|++++|.....++. .+.        .+++|++|+++++ ++.... ...+..+++|++|++++|..-..
T Consensus        49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~--------~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~  118 (455)
T 3v47_A           49 SFSRLQDLQFLKVEQQTPGLVIRNNTFR--------GLSSLIILKLDYN-QFLQLE-TGAFNGLANLEVLTLTQCNLDGA  118 (455)
T ss_dssp             TTSSCTTCCEEECCCCSTTCEECTTTTT--------TCTTCCEEECTTC-TTCEEC-TTTTTTCTTCCEEECTTSCCBTH
T ss_pred             HhccCccccEEECcCCcccceECccccc--------ccccCCEEeCCCC-ccCccC-hhhccCcccCCEEeCCCCCCCcc
Confidence            588999999999999986555543 333        5899999999994 233331 12367899999999999854333


Q ss_pred             cccC--CcCccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEe
Q 046857           84 FSQG--IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEV  160 (439)
Q Consensus        84 l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l  160 (439)
                      ++..  ++.+++|++|++++|.+....         |.. +..+++|++|+++++. +..+.... +......+|+.|++
T Consensus       119 ~~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~~~L~~L~l  187 (455)
T 3v47_A          119 VLSGNFFKPLTSLEMLVLRDNNIKKIQ---------PASFFLNMRRFHVLDLTFNK-VKSICEED-LLNFQGKHFTLLRL  187 (455)
T ss_dssp             HHHSSTTTTCTTCCEEECCSSBCCSCC---------CCGGGGGCTTCCEEECTTCC-BSCCCTTT-SGGGTTCEEEEEEC
T ss_pred             ccCcccccCcccCCEEECCCCccCccC---------cccccCCCCcccEEeCCCCc-ccccChhh-hhcccccccccccc
Confidence            4544  888999999999996543221         222 4468999999999765 44332222 22112368899999


Q ss_pred             ccccccccccchh-------HHhhccccceeeeccccccchhcc-ccccccccCcccccccccceEecCCcccccccc--
Q 046857          161 DYCTNMSSAIPAN-------LLRCLNNLARLEVRNCDSLEEMLH-LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFC--  230 (439)
Q Consensus       161 ~~~~~l~~~~~~~-------~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--  230 (439)
                      .++. +.+..+..       .+..+++|++|+++++......+. +....       .. ++|+.|++.++.......  
T Consensus       188 ~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-------~~-~~L~~L~l~~~~~~~~~~~~  258 (455)
T 3v47_A          188 SSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-------AG-TKIQSLILSNSYNMGSSFGH  258 (455)
T ss_dssp             TTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT-------TT-CCEEEEECTTCTTTSCCTTC
T ss_pred             ccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc-------cc-cceeeEeeccccccccccch
Confidence            8864 44322211       012457899999998754333221 11100       02 788888888764332211  


Q ss_pred             -------cCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccce
Q 046857          231 -------NFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRK  301 (439)
Q Consensus       231 -------~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  301 (439)
                             .........++|+.+++.++ .+....+.. ...+++|++|  +.+.+.++.+         .....+++|+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~  327 (455)
T 3v47_A          259 TNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSV-FSHFTDLEQLTLAQNEINKIDD---------NAFWGLTHLLK  327 (455)
T ss_dssp             CSSCCCCTTTTGGGTTSCCCEEECCSS-CCCEECTTT-TTTCTTCCEEECTTSCCCEECT---------TTTTTCTTCCE
T ss_pred             hhhccCcccccccccccCceEEEecCc-cccccchhh-cccCCCCCEEECCCCcccccCh---------hHhcCcccCCE
Confidence                   00101123468999999885 455554433 3577888888  6666766533         23456789999


Q ss_pred             EeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEE
Q 046857          302 LRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMK  381 (439)
Q Consensus       302 L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~  381 (439)
                      |+++++ .++.+....+.   .+++|++|++++|..-...|..+..+++|++|+++++ +++.+ |...+..+++|+.|+
T Consensus       328 L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          328 LNLSQN-FLGSIDSRMFE---NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSV-PDGIFDRLTSLQKIW  401 (455)
T ss_dssp             EECCSS-CCCEECGGGGT---TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEE
T ss_pred             EECCCC-ccCCcChhHhc---CcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccC-CHhHhccCCcccEEE
Confidence            999986 45655444333   7899999999998544444677889999999999985 68887 555567899999999


Q ss_pred             Ecccc
Q 046857          382 IVDCK  386 (439)
Q Consensus       382 l~~c~  386 (439)
                      +++++
T Consensus       402 l~~N~  406 (455)
T 3v47_A          402 LHTNP  406 (455)
T ss_dssp             CCSSC
T ss_pred             ccCCC
Confidence            99874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=1.9e-20  Score=194.21  Aligned_cols=152  Identities=16%  Similarity=0.224  Sum_probs=89.8

Q ss_pred             ccCceEEEccccccceecc-ccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-C
Q 046857           10 NSLVNLNVSYCEKIEEIIG-HVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-G   87 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~   87 (439)
                      +++++|++++|. +..++. .+.        .+++|++|+++++ .+..... ..+..+++|++|++++| .+..+|. .
T Consensus        25 ~~l~~L~Ls~n~-l~~~~~~~~~--------~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~   92 (680)
T 1ziw_A           25 TNITVLNLTHNQ-LRRLPAANFT--------RYSQLTSLDVGFN-TISKLEP-ELCQKLPMLKVLNLQHN-ELSQLSDKT   92 (680)
T ss_dssp             TTCSEEECCSSC-CCCCCGGGGG--------GGTTCSEEECCSS-CCCCCCT-THHHHCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCCcEEECCCCC-CCCcCHHHHh--------CCCcCcEEECCCC-ccCccCH-HHHhcccCcCEEECCCC-ccCccChhh
Confidence            678888888875 444433 233        4678888888873 2332211 12456788888888875 5666665 4


Q ss_pred             CcCccCccceeecCceeeecCcCchhhhhhh-hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccc
Q 046857           88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCY-EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNM  166 (439)
Q Consensus        88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l  166 (439)
                      ++.+++|++|+++++.+.          .++ ..+.++++|++|+++++. +..+....   ...+++|++|+++++ .+
T Consensus        93 ~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l  157 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNSIQ----------KIKNNPFVKQKNLITLDLSHNG-LSSTKLGT---QVQLENLQELLLSNN-KI  157 (680)
T ss_dssp             TTTCTTCSEEECCSSCCC----------CCCSCTTTTCTTCCEEECCSSC-CSCCCCCS---SSCCTTCCEEECCSS-CC
T ss_pred             hccCCCCCEEECCCCccC----------ccChhHccccCCCCEEECCCCc-ccccCchh---hcccccCCEEEccCC-cc
Confidence            777888888888774432          222 234467778888887654 33222211   135677777777775 34


Q ss_pred             ccccchhHHh--hccccceeeeccc
Q 046857          167 SSAIPANLLR--CLNNLARLEVRNC  189 (439)
Q Consensus       167 ~~~~~~~~~~--~l~~L~~L~l~~~  189 (439)
                      +...+ ..+.  .+++|++|+++++
T Consensus       158 ~~~~~-~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          158 QALKS-EELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCBCH-HHHGGGTTCEESEEECTTC
T ss_pred             cccCH-HHhhccccccccEEECCCC
Confidence            44322 2233  3467777777765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=1.1e-19  Score=180.64  Aligned_cols=296  Identities=17%  Similarity=0.149  Sum_probs=201.1

Q ss_pred             cccCceEEEcccccccee-ccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            9 PNSLVNLNVSYCEKIEEI-IGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         9 ~~~L~~L~l~~c~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      .++++.|+|++|. +..+ +..+.        .+++|++|+++++ .+..+.. ..+..+++|++|+++++ .++.+|..
T Consensus        31 ~~~l~~L~L~~n~-l~~~~~~~~~--------~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~   98 (477)
T 2id5_A           31 PTETRLLDLGKNR-IKTLNQDEFA--------SFPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLG   98 (477)
T ss_dssp             CTTCSEEECCSSC-CCEECTTTTT--------TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCSCCTT
T ss_pred             CCCCcEEECCCCc-cceECHhHcc--------CCCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCCC-cCCccCcc
Confidence            4678888988886 4444 33343        5789999999883 3333321 23667899999999986 56677654


Q ss_pred             -CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccc
Q 046857           88 -IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNM  166 (439)
Q Consensus        88 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l  166 (439)
                       +..+++|++|++++|.+...         .+..+..+++|++|+++++. +..+.... +  ..+++|++|++.++ .+
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~--~~l~~L~~L~l~~n-~l  164 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVIL---------LDYMFQDLYNLKSLEVGDND-LVYISHRA-F--SGLNSLEQLTLEKC-NL  164 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCEE---------CTTTTTTCTTCCEEEECCTT-CCEECTTS-S--TTCTTCCEEEEESC-CC
T ss_pred             cccCCCCCCEEECCCCccccC---------ChhHccccccCCEEECCCCc-cceeChhh-c--cCCCCCCEEECCCC-cC
Confidence             57889999999988554322         12244568889999998665 54443322 2  36789999999887 56


Q ss_pred             ccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEe
Q 046857          167 SSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLT  246 (439)
Q Consensus       167 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~  246 (439)
                      +. ++...+..+++|+.|++.++. +..+..        ..+..+ ++|+.|+++++..+..++....   ...+|+.|+
T Consensus       165 ~~-~~~~~l~~l~~L~~L~l~~n~-i~~~~~--------~~~~~l-~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~  230 (477)
T 2id5_A          165 TS-IPTEALSHLHGLIVLRLRHLN-INAIRD--------YSFKRL-YRLKVLEISHWPYLDTMTPNCL---YGLNLTSLS  230 (477)
T ss_dssp             SS-CCHHHHTTCTTCCEEEEESCC-CCEECT--------TCSCSC-TTCCEEEEECCTTCCEECTTTT---TTCCCSEEE
T ss_pred             cc-cChhHhcccCCCcEEeCCCCc-CcEeCh--------hhcccC-cccceeeCCCCccccccCcccc---cCccccEEE
Confidence            65 455558889999999998763 333221        112224 8899999998887777765543   456899999


Q ss_pred             EecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcccccc
Q 046857          247 IENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVF  324 (439)
Q Consensus       247 l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~  324 (439)
                      +.++ .+..++.. ....+++|+.|  +.+.+..+.+         .....+++|+.|+++++ .+..+....+.   .+
T Consensus       231 l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~---~l  295 (477)
T 2id5_A          231 ITHC-NLTAVPYL-AVRHLVYLRFLNLSYNPISTIEG---------SMLHELLRLQEIQLVGG-QLAVVEPYAFR---GL  295 (477)
T ss_dssp             EESS-CCCSCCHH-HHTTCTTCCEEECCSSCCCEECT---------TSCTTCTTCCEEECCSS-CCSEECTTTBT---TC
T ss_pred             CcCC-cccccCHH-HhcCccccCeeECCCCcCCccCh---------hhccccccCCEEECCCC-ccceECHHHhc---Cc
Confidence            9986 45554322 34577888887  6666666432         12446788999999886 45555444444   78


Q ss_pred             CCcceEEeecCCCcccccCC-CccCCCcceEEEccCC
Q 046857          325 ANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCH  360 (439)
Q Consensus       325 ~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~  360 (439)
                      ++|++|+++++ .++.++.. +..+++|++|++++++
T Consensus       296 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          296 NYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             TTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             ccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence            89999999887 45566543 4578899999998754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.85  E-value=1.1e-20  Score=186.08  Aligned_cols=293  Identities=14%  Similarity=0.109  Sum_probs=204.8

Q ss_pred             CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF   84 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l   84 (439)
                      +++++++|++|++++|. +..++ .++        .+++|++|+++++ ++..+   + +..+++|++|++++| .++.+
T Consensus        37 ~~~~l~~L~~L~Ls~n~-l~~~~-~l~--------~l~~L~~L~Ls~n-~l~~~---~-~~~l~~L~~L~Ls~N-~l~~~  100 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSS-ITDMT-GIE--------KLTGLTKLICTSN-NITTL---D-LSQNTNLTYLACDSN-KLTNL  100 (457)
T ss_dssp             EHHHHTTCCEEECCSSC-CCCCT-TGG--------GCTTCSEEECCSS-CCSCC---C-CTTCTTCSEEECCSS-CCSCC
T ss_pred             ChhHcCCCCEEEccCCC-cccCh-hhc--------ccCCCCEEEccCC-cCCeE---c-cccCCCCCEEECcCC-CCcee
Confidence            45678999999999985 45554 333        5889999999993 34443   2 678999999999996 46666


Q ss_pred             ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857           85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT  164 (439)
Q Consensus        85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~  164 (439)
                      +  ++.+++|++|+++++.+..          ++  +..+++|++|+++++. +..++      ...+++|+.|+++++.
T Consensus       101 ~--~~~l~~L~~L~L~~N~l~~----------l~--~~~l~~L~~L~l~~N~-l~~l~------l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          101 D--VTPLTKLTYLNCDTNKLTK----------LD--VSQNPLLTYLNCARNT-LTEID------VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSC----------CC--CTTCTTCCEEECTTSC-CSCCC------CTTCTTCCEEECTTCS
T ss_pred             e--cCCCCcCCEEECCCCcCCe----------ec--CCCCCcCCEEECCCCc-cceec------cccCCcCCEEECCCCC
Confidence            5  7889999999999855432          22  4568899999999765 54432      2468899999999986


Q ss_pred             ccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccE
Q 046857          165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWS  244 (439)
Q Consensus       165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~  244 (439)
                      .+... +   +..+++|++|+++++ .++.++ +          ..+ ++|+.|+++++ .++.+     ....+++|+.
T Consensus       160 ~~~~~-~---~~~l~~L~~L~ls~n-~l~~l~-l----------~~l-~~L~~L~l~~N-~l~~~-----~l~~l~~L~~  216 (457)
T 3bz5_A          160 KITKL-D---VTPQTQLTTLDCSFN-KITELD-V----------SQN-KLLNRLNCDTN-NITKL-----DLNQNIQLTF  216 (457)
T ss_dssp             CCCCC-C---CTTCTTCCEEECCSS-CCCCCC-C----------TTC-TTCCEEECCSS-CCSCC-----CCTTCTTCSE
T ss_pred             ccccc-c---cccCCcCCEEECCCC-ccceec-c----------ccC-CCCCEEECcCC-cCCee-----ccccCCCCCE
Confidence            66653 2   567899999999986 444432 1          123 88999999887 34444     2247789999


Q ss_pred             EeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCcc----------ceEeecCCCCcee
Q 046857          245 LTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQL----------RKLRLSGLHKVQH  312 (439)
Q Consensus       245 L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L----------~~L~l~~~~~l~~  312 (439)
                      |++.++ .+..++    ...+++|+.|  +.+.+.+++            ...+++|          +.++++++..++.
T Consensus       217 L~Ls~N-~l~~ip----~~~l~~L~~L~l~~N~l~~~~------------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~  279 (457)
T 3bz5_A          217 LDCSSN-KLTEID----VTPLTQLTYFDCSVNPLTELD------------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY  279 (457)
T ss_dssp             EECCSS-CCSCCC----CTTCTTCSEEECCSSCCSCCC------------CTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred             EECcCC-cccccC----ccccCCCCEEEeeCCcCCCcC------------HHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence            999885 455553    3577888887  556666532            2234444          4455555544444


Q ss_pred             ccccCCccccccCCcceEEeecCCCcccccCC--------CccCCCcceEEEccCCCcccccChhHHhhccccceEEEcc
Q 046857          313 LWKENDESNKVFANLERLEISECSKLQKLVPP--------SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVD  384 (439)
Q Consensus       313 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~--------~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~  384 (439)
                      ++..      .+++|+.|++++|+.++.+|..        +.++++|++|+++++ +++.+ +   +..+++|+.|++++
T Consensus       280 ~~~~------~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l-~---l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          280 FQAE------GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL-D---VSHNTKLKSLSCVN  348 (457)
T ss_dssp             EECT------TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC-C---CTTCTTCSEEECCS
T ss_pred             cccc------ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc-c---cccCCcCcEEECCC
Confidence            4433      6789999999998877766632        345678888888874 57665 3   35788999999987


Q ss_pred             c
Q 046857          385 C  385 (439)
Q Consensus       385 c  385 (439)
                      +
T Consensus       349 N  349 (457)
T 3bz5_A          349 A  349 (457)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=3.4e-20  Score=186.23  Aligned_cols=156  Identities=13%  Similarity=0.060  Sum_probs=111.4

Q ss_pred             cCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCcee-c
Q 046857          237 IEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQH-L  313 (439)
Q Consensus       237 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l  313 (439)
                      ..+++|+.|+++++ .+....+.. ...+++|+.|  +.+.+.++..       .......+++|+.|+++++. +.. +
T Consensus       321 ~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~-------~~~~~~~l~~L~~L~Ls~N~-l~~~l  390 (520)
T 2z7x_B          321 SKISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQMNQLKELSK-------IAEMTTQMKSLQQLDISQNS-VSYDE  390 (520)
T ss_dssp             SSCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCSSCCCBHHH-------HHHHHTTCTTCCEEECCSSC-CBCCG
T ss_pred             hhCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccCCccCcccc-------chHHHhhCCCCCEEECCCCc-CCccc
Confidence            47799999999996 444433332 3578888888  5566654210       00124567899999999864 444 6


Q ss_pred             cccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhcc
Q 046857          314 WKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQ  393 (439)
Q Consensus       314 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~  393 (439)
                      +...+.   .+++|++|++++|.....++..+.  ++|++|++++| +++.+ |..+. .+++|+.|++++| .++.++.
T Consensus       391 ~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~i-p~~~~-~l~~L~~L~L~~N-~l~~l~~  461 (520)
T 2z7x_B          391 KKGDCS---WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSI-PKQVV-KLEALQELNVASN-QLKSVPD  461 (520)
T ss_dssp             GGCSCC---CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSS-CCCCCCT
T ss_pred             ccchhc---cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-ccccc-chhhh-cCCCCCEEECCCC-cCCccCH
Confidence            544333   678999999999875555555443  79999999986 58876 76554 8999999999998 6776654


Q ss_pred             ccccccCCCceEeccccEEecCCCC
Q 046857          394 SQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       394 ~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      .       .+..+++|++++++++|
T Consensus       462 ~-------~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          462 G-------IFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             T-------TTTTCTTCCEEECCSSC
T ss_pred             H-------HhccCCcccEEECcCCC
Confidence            2       36678999999998875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=3.3e-20  Score=187.58  Aligned_cols=157  Identities=19%  Similarity=0.275  Sum_probs=101.7

Q ss_pred             cccCceEEEcccccccee-ccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-
Q 046857            9 PNSLVNLNVSYCEKIEEI-IGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-   86 (439)
Q Consensus         9 ~~~L~~L~l~~c~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-   86 (439)
                      .++|++|++++|. +..+ +..+.        .+++|++|+++++ ++...+. ..+..+++|++|++++| .+..++. 
T Consensus        25 ~~~L~~L~Ls~n~-l~~~~~~~~~--------~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~   92 (549)
T 2z81_A           25 TAAMKSLDLSFNK-ITYIGHGDLR--------ACANLQVLILKSS-RINTIEG-DAFYSLGSLEHLDLSDN-HLSSLSSS   92 (549)
T ss_dssp             CTTCCEEECCSSC-CCEECSSTTS--------SCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCSCCHH
T ss_pred             CCCccEEECcCCc-cCccChhhhh--------cCCcccEEECCCC-CcCccCh-hhccccccCCEEECCCC-ccCccCHH
Confidence            3678888888886 4444 34343        5788888888883 3333321 22667888888888886 4555444 


Q ss_pred             CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccc
Q 046857           87 GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNM  166 (439)
Q Consensus        87 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l  166 (439)
                      .++.+++|++|++++|.+...+        .+..+..+++|++|+++++..+..++... +  ..+++|++|++.++ .+
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~--~~l~~L~~L~L~~n-~l  160 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLG--------VTSLFPNLTNLQTLRIGNVETFSEIRRID-F--AGLTSLNELEIKAL-SL  160 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSC--------SSCSCTTCTTCCEEEEEESSSCCEECTTT-T--TTCCEEEEEEEEET-TC
T ss_pred             HhccCCCCcEEECCCCcccccc--------hhhhhhccCCccEEECCCCccccccCHhh-h--hcccccCeeeccCC-cc
Confidence            3778888888888885433211        12334567788888888776566654322 1  35778888888776 35


Q ss_pred             ccccchhHHhhccccceeeecccc
Q 046857          167 SSAIPANLLRCLNNLARLEVRNCD  190 (439)
Q Consensus       167 ~~~~~~~~~~~l~~L~~L~l~~~~  190 (439)
                      +...|.. +..+++|++|++.++.
T Consensus       161 ~~~~~~~-l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          161 RNYQSQS-LKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             CEECTTT-TTTCSEEEEEEEECSB
T ss_pred             cccChhh-hhccccCceEecccCc
Confidence            5444544 6667777777777653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=1.3e-19  Score=184.81  Aligned_cols=107  Identities=20%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857          293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK  372 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~  372 (439)
                      ...+++|+.|+++++. +..+....+.   .+++|++|+++++ .++.+|.....+++|+.|++++| .++.+ |.. +.
T Consensus       250 l~~l~~L~~L~Ls~N~-l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i-~~~-~~  321 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNE-LEKIMYHPFV---KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHV-ERN-QP  321 (597)
T ss_dssp             GGGCTTCSEEECCSSC-CCEEESGGGT---TCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCC-GGG-HH
T ss_pred             hccCCCCCEEECCCCc-cCCCCHHHhc---CccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCcc-Ccc-cc
Confidence            4456677777777653 4433322222   5677777777765 45556666666777777777765 35554 443 35


Q ss_pred             hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      .+++|+.|++++| .+..+          .+..+++|++|+++++|
T Consensus       322 ~l~~L~~L~L~~N-~l~~~----------~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          322 QFDRLENLYLDHN-SIVTL----------KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             HHTTCSEEECCSS-CCCCC----------CCCTTCCCSEEECCSSC
T ss_pred             cCCCCCEEECCCC-CCCCc----------ChhhcCCCCEEEeeCCC
Confidence            6677777777776 34333          23445677777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=5.8e-19  Score=187.18  Aligned_cols=161  Identities=11%  Similarity=0.051  Sum_probs=112.2

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      ..++|++|+|++|...+..+..+.        .+++|++|+++++.....++. ..+..+++|++|++++|..-...|..
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~--------~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFP--------FLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCS--------SCCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCcCEEECCCCcCCccChhHCc--------ccccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCCcCcccCHhH
Confidence            468899999999874333344444        688999999999644444422 23678999999999997544345888


Q ss_pred             CcCccCccceeecCceeeecCcCchhhhhhhhh--hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857           88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE--MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN  165 (439)
Q Consensus        88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~  165 (439)
                      ++.+++|++|++++|.+..         .++..  +..+++|++|+++++. +..+....  ....+++|++|+++++ .
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~--~~~~L~~L~~L~Ls~N-~  159 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSD---------AVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHP--SFGKLNSLKSIDFSSN-Q  159 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSS---------CCSTTCCCSSCSSCCEEEEESCC-CCCCCCCG--GGGTCSSCCEEEEESS-C
T ss_pred             ccCCcccCEeeCcCCCCCc---------ccccCccccccCCCCEEECCCCc-ccccccch--hHhhCCCCCEEECCCC-c
Confidence            9999999999999854331         12222  5578999999999765 33322110  0246899999999886 4


Q ss_pred             cccccchhHHhhc--cccceeeeccccc
Q 046857          166 MSSAIPANLLRCL--NNLARLEVRNCDS  191 (439)
Q Consensus       166 l~~~~~~~~~~~l--~~L~~L~l~~~~~  191 (439)
                      ++...+.. +..+  ++|+.|+++++..
T Consensus       160 i~~~~~~~-l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          160 IFLVCEHE-LEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             CCCCCSGG-GHHHHHCSSCCCEECCSBS
T ss_pred             CCeeCHHH-cccccCCccceEECCCCcc
Confidence            55544544 5555  8899999998743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=4.8e-19  Score=187.82  Aligned_cols=290  Identities=11%  Similarity=0.057  Sum_probs=165.7

Q ss_pred             CCCCccccCceEEEcccccccee-ccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc
Q 046857            4 GSVGIPNSLVNLNVSYCEKIEEI-IGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK   82 (439)
Q Consensus         4 ~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~   82 (439)
                      .+|+++++|++|+|++|..+..+ +..+.        .+++|++|+++++ ++.... ...+..+++|++|++++|..-.
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--------~L~~L~~L~Ls~N-~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~  111 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPLTIDKEAFR--------NLPNLRILDLGSS-KIYFLH-PDAFQGLFHLFELRLYFCGLSD  111 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCCEECTTTTS--------SCTTCCEEECTTC-CCCEEC-TTSSCSCSSCCCEECTTCCCSS
T ss_pred             hHCcccccCeEEeCCCCCCccccCHHHhc--------CCCCCCEEECCCC-cCcccC-HhHccCCcccCEeeCcCCCCCc
Confidence            35889999999999999777777 44444        5889999999983 333331 2336789999999999975443


Q ss_pred             ccccC--CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCcc--CCccEE
Q 046857           83 TFSQG--IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFF--NYLAEL  158 (439)
Q Consensus        83 ~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~--~~L~~L  158 (439)
                      .+|..  ++.+++|++|++++|.+....        .+..+..+++|++|+++++. +..+.... +  ..+  ++|+.|
T Consensus       112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~-l--~~l~~~~L~~L  179 (844)
T 3j0a_A          112 AVLKDGYFRNLKALTRLDLSKNQIRSLY--------LHPSFGKLNSLKSIDFSSNQ-IFLVCEHE-L--EPLQGKTLSFF  179 (844)
T ss_dssp             CCSTTCCCSSCSSCCEEEEESCCCCCCC--------CCGGGGTCSSCCEEEEESSC-CCCCCSGG-G--HHHHHCSSCCC
T ss_pred             ccccCccccccCCCCEEECCCCcccccc--------cchhHhhCCCCCEEECCCCc-CCeeCHHH-c--ccccCCccceE
Confidence            45554  788999999999985543211        11345578999999998765 33221111 1  122  677888


Q ss_pred             EeccccccccccchhHHhhcc------ccceeeeccccccchhcc-ccc-------------------------ccc-cc
Q 046857          159 EVDYCTNMSSAIPANLLRCLN------NLARLEVRNCDSLEEMLH-LEE-------------------------LNA-DK  205 (439)
Q Consensus       159 ~l~~~~~l~~~~~~~~~~~l~------~L~~L~l~~~~~l~~~~~-~~~-------------------------~~~-~~  205 (439)
                      ++.++. +....+.. +..+.      +|++|+++++......+. +..                         ... ..
T Consensus       180 ~L~~n~-l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~  257 (844)
T 3j0a_A          180 SLAANS-LYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ  257 (844)
T ss_dssp             EECCSB-SCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred             ECCCCc-cccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence            887763 33333332 22222      377888876632111110 000                         000 00


Q ss_pred             Cccccc-ccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeee
Q 046857          206 EHIGPL-FPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLL  282 (439)
Q Consensus       206 ~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~  282 (439)
                      ..+..+ .++|+.|+++++.-....+...   ..+++|+.|++.++ .+..+.+.. ...+++|+.|  +.+.+..+.+ 
T Consensus       258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-  331 (844)
T 3j0a_A          258 NTFAGLARSSVRHLDLSHGFVFSLNSRVF---ETLKDLKVLNLAYN-KINKIADEA-FYGLDNLQVLNLSYNLLGELYS-  331 (844)
T ss_dssp             TTTTTTTTSCCCEEECTTCCCCEECSCCS---SSCCCCCEEEEESC-CCCEECTTT-TTTCSSCCEEEEESCCCSCCCS-
T ss_pred             hhhhccccCCccEEECCCCcccccChhhh---hcCCCCCEEECCCC-cCCCCChHH-hcCCCCCCEEECCCCCCCccCH-
Confidence            000000 1578888887764322222222   36778888888874 455554433 3466777777  4455544322 


Q ss_pred             ccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecC
Q 046857          283 AHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISEC  335 (439)
Q Consensus       283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c  335 (439)
                              .....+++|+.|+++++ .++.+....+.   .+++|++|+++++
T Consensus       332 --------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          332 --------SNFYGLPKVAYIDLQKN-HIAIIQDQTFK---FLEKLQTLDLRDN  372 (844)
T ss_dssp             --------CSCSSCTTCCEEECCSC-CCCCCCSSCSC---SCCCCCEEEEETC
T ss_pred             --------HHhcCCCCCCEEECCCC-CCCccChhhhc---CCCCCCEEECCCC
Confidence                    12335566777776664 34444333222   4556666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=9.2e-20  Score=183.09  Aligned_cols=108  Identities=17%  Similarity=0.136  Sum_probs=70.6

Q ss_pred             ccccCccceEeecCCCCceeccc--cCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChh
Q 046857          293 KVAFPQLRKLRLSGLHKVQHLWK--ENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLS  369 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~  369 (439)
                      ...+++|+.|+++++. +..+..  ..+.   .+++|++|+++++.....+|.. ...+++|++|++++|. ++..+|..
T Consensus       344 ~~~l~~L~~L~L~~N~-l~~l~~~~~~~~---~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~  418 (520)
T 2z7x_B          344 CGHLTELETLILQMNQ-LKELSKIAEMTT---QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRC  418 (520)
T ss_dssp             CCCCSSCCEEECCSSC-CCBHHHHHHHHT---TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGS
T ss_pred             hccCCCCCEEEccCCc-cCccccchHHHh---hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhh
Confidence            3466788888887753 443211  1111   6778888888887544446654 5577888888888764 54332332


Q ss_pred             HHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857          370 ASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL  417 (439)
Q Consensus       370 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c  417 (439)
                      +   .++|+.|++++| .++.++.        .+..+++|++|+++++
T Consensus       419 l---~~~L~~L~Ls~N-~l~~ip~--------~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          419 L---PPRIKVLDLHSN-KIKSIPK--------QVVKLEALQELNVASN  454 (520)
T ss_dssp             C---CTTCCEEECCSS-CCCCCCG--------GGGGCTTCCEEECCSS
T ss_pred             h---cccCCEEECCCC-cccccch--------hhhcCCCCCEEECCCC
Confidence            1   168888888888 6666654        4557889999998876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=2.8e-19  Score=181.22  Aligned_cols=108  Identities=11%  Similarity=0.099  Sum_probs=65.7

Q ss_pred             cccCccceEeecCCCCcee-ccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857          294 VAFPQLRKLRLSGLHKVQH-LWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK  372 (439)
Q Consensus       294 ~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~  372 (439)
                      ..+++|+.|+++++. +.. ++...+.   .+++|++|+++++..-..++..+.  ++|++|+++++ +++.+ |..+. 
T Consensus       400 ~~l~~L~~L~l~~N~-l~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~i-p~~~~-  470 (562)
T 3a79_B          400 KNMSSLETLDVSLNS-LNSHAYDRTCA---WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSI-PKDVT-  470 (562)
T ss_dssp             TTCTTCCEEECTTSC-CBSCCSSCCCC---CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCC-CTTTT-
T ss_pred             cCCCCCCEEECCCCc-CCCccChhhhc---CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCccc-Chhhc-
Confidence            345666666666643 332 3333222   556777777776654334443322  57788888775 57765 55444 


Q ss_pred             hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      .+++|+.|+++++ .++.++..       .+..+++|++++++++|
T Consensus       471 ~l~~L~~L~L~~N-~l~~l~~~-------~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          471 HLQALQELNVASN-QLKSVPDG-------VFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             SSCCCSEEECCSS-CCCCCCTT-------STTTCTTCCCEECCSCC
T ss_pred             CCCCCCEEECCCC-CCCCCCHH-------HHhcCCCCCEEEecCCC
Confidence            7788888888877 56655532       25667788888887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=1.1e-21  Score=200.33  Aligned_cols=172  Identities=13%  Similarity=0.116  Sum_probs=89.9

Q ss_pred             CccccCceEEEccccccceec---ccccccc----ccccccccccceeeccccccccccccccCccCCCCccEEeeccCC
Q 046857            7 GIPNSLVNLNVSYCEKIEEII---GHVGEEV----KENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCP   79 (439)
Q Consensus         7 ~~~~~L~~L~l~~c~~~~~~~---~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~   79 (439)
                      ..+++|++|++++|..+....   ...+...    ..-...+++|++|+++++. +.+.........+++|++|++.+|.
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            467888889998887654331   1110000    0001146788888888753 2221111111247788888888876


Q ss_pred             Cccc--cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC-CceeecCCCCCCcCccCCcc
Q 046857           80 NMKT--FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP-RLKEIWHGQALPVRFFNYLA  156 (439)
Q Consensus        80 ~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~l~~i~~~~~l~~~~~~~L~  156 (439)
                      .+..  ++..+..+++|++|++++|.+...+.  ..   ++.....+++|++|+++++. .+..-.... +. ..+++|+
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~--~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-l~-~~~~~L~  214 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSG--HW---LSHFPDTYTSLVSLNISCLASEVSFSALER-LV-TRCPNLK  214 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCG--GG---GGGSCTTCCCCCEEECTTCCSCCCHHHHHH-HH-HHCTTCC
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcch--HH---HHHHhhcCCcCcEEEecccCCcCCHHHHHH-HH-HhCCCCc
Confidence            5553  44444567788888887766432220  11   22222256677777777654 111000000 00 1357777


Q ss_pred             EEEeccccccccccchhHHhhccccceeeecc
Q 046857          157 ELEVDYCTNMSSAIPANLLRCLNNLARLEVRN  188 (439)
Q Consensus       157 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~  188 (439)
                      +|++.+|..++. ++. .+..+++|++|++..
T Consensus       215 ~L~L~~~~~~~~-l~~-~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          215 SLKLNRAVPLEK-LAT-LLQRAPQLEELGTGG  244 (594)
T ss_dssp             EEECCTTSCHHH-HHH-HHHHCTTCSEEECSB
T ss_pred             EEecCCCCcHHH-HHH-HHhcCCcceEccccc
Confidence            777777655544 333 255666666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=4.4e-19  Score=174.65  Aligned_cols=298  Identities=12%  Similarity=0.103  Sum_probs=208.0

Q ss_pred             cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      .+++|++|+++++ .+..+   +.+..+++|++|++++| .++.+|  ++.+++|++|++++|.+..          ++ 
T Consensus        40 ~l~~L~~L~Ls~n-~l~~~---~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~----------~~-  101 (457)
T 3bz5_A           40 QLATLTSLDCHNS-SITDM---TGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTN----------LD-  101 (457)
T ss_dssp             HHTTCCEEECCSS-CCCCC---TTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSC----------CC-
T ss_pred             HcCCCCEEEccCC-CcccC---hhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCce----------ee-
Confidence            5899999999993 44444   45788999999999997 577775  7889999999999955332          22 


Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                       +..+++|++|+++++. +..++      ...+++|++|+++++ .++.. +   +..+++|++|++++|..+..+ .+ 
T Consensus       102 -~~~l~~L~~L~L~~N~-l~~l~------~~~l~~L~~L~l~~N-~l~~l-~---l~~l~~L~~L~l~~n~~~~~~-~~-  166 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNK-LTKLD------VSQNPLLTYLNCARN-TLTEI-D---VSHNTQLTELDCHLNKKITKL-DV-  166 (457)
T ss_dssp             -CTTCTTCCEEECCSSC-CSCCC------CTTCTTCCEEECTTS-CCSCC-C---CTTCTTCCEEECTTCSCCCCC-CC-
T ss_pred             -cCCCCcCCEEECCCCc-CCeec------CCCCCcCCEEECCCC-cccee-c---cccCCcCCEEECCCCCccccc-cc-
Confidence             4568999999999774 55543      246899999999987 56653 3   667899999999998766554 11 


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcc
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLE  277 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~  277 (439)
                               ..+ ++|+.|+++++ .++.++     ...+++|+.|++.++ .+..++    ...+++|+.|  +.+.+.
T Consensus       167 ---------~~l-~~L~~L~ls~n-~l~~l~-----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          167 ---------TPQ-TQLTTLDCSFN-KITELD-----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             ---------TTC-TTCCEEECCSS-CCCCCC-----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCS
T ss_pred             ---------ccC-CcCCEEECCCC-ccceec-----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCccc
Confidence                     124 89999999987 455553     347899999999986 455542    3577888888  666676


Q ss_pred             eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCC----------cceEEeecCCCcccccCCCcc
Q 046857          278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFAN----------LERLEISECSKLQKLVPPSWH  347 (439)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~----------L~~L~l~~c~~l~~l~~~~~~  347 (439)
                      ++            +...+++|+.|+++++ .++.++..      .+++          |+.|++++|.....+|  ...
T Consensus       226 ~i------------p~~~l~~L~~L~l~~N-~l~~~~~~------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~  284 (457)
T 3bz5_A          226 EI------------DVTPLTQLTYFDCSVN-PLTELDVS------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEG  284 (457)
T ss_dssp             CC------------CCTTCTTCSEEECCSS-CCSCCCCT------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTT
T ss_pred             cc------------CccccCCCCEEEeeCC-cCCCcCHH------HCCCCCEEeccCCCCCEEECCCCccCCccc--ccc
Confidence            63            2457789999999986 45555544      4444          4555666666666666  357


Q ss_pred             CCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857          348 LENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL  417 (439)
Q Consensus       348 l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c  417 (439)
                      +++|+.|++++|+.++.+ |.    ..++|+.|++++|+.++.+..+.-.=....+.++++|+.|+++++
T Consensus       285 l~~L~~L~Ls~n~~l~~l-~~----~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          285 CRKIKELDVTHNTQLYLL-DC----QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA  349 (457)
T ss_dssp             CTTCCCCCCTTCTTCCEE-EC----TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSS
T ss_pred             cccCCEEECCCCccccee-cc----CCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCC
Confidence            899999999999877765 43    234555555555555555443210000013556777788777653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=2.4e-21  Score=197.80  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             ccCCccEEEeccccccccccchhHHhhccccceeeecccc
Q 046857          151 FFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCD  190 (439)
Q Consensus       151 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  190 (439)
                      .+++|+.|.+.++.  ...++. .+..+++|++|++++|.
T Consensus       268 ~~~~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          268 FPRKLCRLGLSYMG--PNEMPI-LFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             CCTTCCEEEETTCC--TTTGGG-GGGGGGGCCEEEETTCC
T ss_pred             ccccccccCccccc--hhHHHH-HHhhcCCCcEEecCCCc
Confidence            45566666665532  111333 25667778888887775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=9.3e-19  Score=177.41  Aligned_cols=151  Identities=13%  Similarity=0.077  Sum_probs=101.9

Q ss_pred             cccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceecc-ccccccccCCCCC--CccCcce-eeeecccccc
Q 046857          213 PRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFIS-NSVVHVTTDNKEP--QKLTLEE-YFLLAHQVQP  288 (439)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L--~~~~l~~-~~~~~~~~~~  288 (439)
                      ++|++|+++++.-.+..+...   ..+++|+.|++.++ .+..++. ......+++|+.|  +.+.+.. ++.       
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------  421 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGC---STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-------  421 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTC---CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-------
T ss_pred             CCceEEECCCCccccchhhhh---cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-------
Confidence            677777777764333233322   36778888888774 4444322 1223566777777  5555554 211       


Q ss_pred             ccccccccCccceEeecCCCCceeccccCCcccccc-CCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccC
Q 046857          289 LFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVF-ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLT  367 (439)
Q Consensus       289 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p  367 (439)
                        .....+++|+.|+++++. +......      .+ ++|++|+++++ .++.+|..+..+++|++|+++++ +++.+ |
T Consensus       422 --~~~~~l~~L~~L~l~~n~-l~~~~~~------~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l-~  489 (562)
T 3a79_B          422 --RTCAWAESILVLNLSSNM-LTGSVFR------CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSV-P  489 (562)
T ss_dssp             --CCCCCCTTCCEEECCSSC-CCGGGGS------SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCC-C
T ss_pred             --hhhcCcccCCEEECCCCC-CCcchhh------hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCC-C
Confidence              113456899999999874 3322222      34 69999999998 67899998889999999999985 68876 6


Q ss_pred             hhHHhhccccceEEEcccc
Q 046857          368 LSASKNLVNLGRMKIVDCK  386 (439)
Q Consensus       368 ~~~~~~l~~L~~L~l~~c~  386 (439)
                      ...+..+++|+.|++++++
T Consensus       490 ~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          490 DGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             TTSTTTCTTCCCEECCSCC
T ss_pred             HHHHhcCCCCCEEEecCCC
Confidence            6556788999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=2.2e-18  Score=166.62  Aligned_cols=285  Identities=14%  Similarity=0.132  Sum_probs=180.4

Q ss_pred             cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cCCcCccCccceeecCceeeecCcCchhhhhh-
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKC-  117 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-  117 (439)
                      .++++++|+++++ .+..++.. .+..+++|++|+++++ .+..++ ..++.+++|++|+++++.+.          .+ 
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~-~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~  109 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAA-LLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR----------YLP  109 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTH-HHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC----------CCC
T ss_pred             ccCCceEEEecCC-chhhCChh-HhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCC----------cCC
Confidence            4677888888772 34444321 1356788888888876 355444 36677788888888774322          22 


Q ss_pred             hhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcc
Q 046857          118 YEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH  197 (439)
Q Consensus       118 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  197 (439)
                      +..+..+++|++|+++++. +..++...   ...+++|++|+++++ .++.. +...+..+++|++|+++++. +..+. 
T Consensus       110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-  181 (390)
T 3o6n_A          110 PHVFQNVPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQNLQLSSNR-LTHVD-  181 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCBC-CTTTTSSCTTCCEEECCSSC-CSBCC-
T ss_pred             HHHhcCCCCCCEEECCCCc-cCcCCHHH---hcCCCCCcEEECCCC-ccCcc-ChhhccCCCCCCEEECCCCc-CCccc-
Confidence            2234457777788877654 54444332   124677777877775 34443 33336667777777777653 32221 


Q ss_pred             ccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcc
Q 046857          198 LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLE  277 (439)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~  277 (439)
                         .       . .+++|+.|+++++ .+..+       ...++|+.|++.++ .+..++                    
T Consensus       182 ---~-------~-~l~~L~~L~l~~n-~l~~~-------~~~~~L~~L~l~~n-~l~~~~--------------------  221 (390)
T 3o6n_A          182 ---L-------S-LIPSLFHANVSYN-LLSTL-------AIPIAVEELDASHN-SINVVR--------------------  221 (390)
T ss_dssp             ---G-------G-GCTTCSEEECCSS-CCSEE-------ECCSSCSEEECCSS-CCCEEE--------------------
T ss_pred             ---c-------c-cccccceeecccc-ccccc-------CCCCcceEEECCCC-eeeecc--------------------
Confidence               0       1 1367777777665 22222       12346677777664 232221                    


Q ss_pred             eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEc
Q 046857          278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVS  357 (439)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~  357 (439)
                                     ...+++|+.|+++++. ++..  ..+   ..+++|++|+++++..-...+..+..+++|++|+++
T Consensus       222 ---------------~~~~~~L~~L~l~~n~-l~~~--~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (390)
T 3o6n_A          222 ---------------GPVNVELTILKLQHNN-LTDT--AWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  280 (390)
T ss_dssp             ---------------CCCCSSCCEEECCSSC-CCCC--GGG---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred             ---------------ccccccccEEECCCCC-Cccc--HHH---cCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence                           2245789999998863 4433  112   278999999999986444456677889999999999


Q ss_pred             cCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          358 KCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       358 ~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      ++ +++.+ +.. ...+++|+.|++++| .++.++.        .+..+++|++|++++++
T Consensus       281 ~n-~l~~~-~~~-~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          281 NN-RLVAL-NLY-GQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             SS-CCCEE-ECS-SSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSSC
T ss_pred             CC-cCccc-Ccc-cCCCCCCCEEECCCC-cceecCc--------cccccCcCCEEECCCCc
Confidence            85 57776 432 357899999999999 6666654        45678899999988764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=1.3e-17  Score=171.33  Aligned_cols=110  Identities=20%  Similarity=0.225  Sum_probs=81.7

Q ss_pred             ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccc-cCCCccCCCcceEEEccCCCcccccChhHH
Q 046857          293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKL-VPPSWHLENLWGLQVSKCHGLINVLTLSAS  371 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~  371 (439)
                      ...+++++.|+++++.....+..+.+.   .+++|++|++++|. ++.+ |..+.++++|++|+++++ +++.+.+. .+
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~---~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~-~~  538 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF-PY  538 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCT---TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCBCCCG-GG
T ss_pred             cccchhhhhhhhhhcccccccCchhhh---hccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCC-cCCCCChh-HH
Confidence            345678999999887655544333343   78899999999984 5555 556778999999999985 68887444 46


Q ss_pred             hhccccceEEEcccccchhhccccccccCCCceEe-ccccEEecCC
Q 046857          372 KNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVF-GKLRYLELDC  416 (439)
Q Consensus       372 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l-~~L~~l~l~~  416 (439)
                      ..+++|+.|+++++ .+..+...       .+.++ ++|++|++++
T Consensus       539 ~~l~~L~~L~Ls~N-~l~~~~~~-------~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          539 KCLNSLQVLDYSLN-HIMTSKKQ-------ELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             TTCTTCCEEECTTS-CCCBCCSS-------CTTCCCTTCCEEECTT
T ss_pred             hCCCCCCEEECCCC-cCCCCCHH-------HHHhhhCcCCEEEeeC
Confidence            78899999999998 66655432       55566 5899999976

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=7e-18  Score=159.37  Aligned_cols=290  Identities=14%  Similarity=0.114  Sum_probs=176.3

Q ss_pred             ccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857           43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM  121 (439)
Q Consensus        43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~  121 (439)
                      +++.++++++ ++..++..    -.++|+.|+++++. +..+ |..+..+++|++|+++++.+...         .+..+
T Consensus        34 ~l~~l~~~~~-~l~~ip~~----~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~   98 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKE----ISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKI---------HEKAF   98 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSC----CCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEE---------CGGGS
T ss_pred             cCCEEECCCC-CccccCCC----CCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCcc---------CHhHh
Confidence            6788888772 34444322    24788899998864 5555 45678888899999888443311         13455


Q ss_pred             cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhc-cccc
Q 046857          122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEML-HLEE  200 (439)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~  200 (439)
                      ..+++|++|+++++. +..++..      .+++|++|+++++ .++. ++...+..+++|++|+++++. ++... ....
T Consensus        99 ~~l~~L~~L~L~~n~-l~~l~~~------~~~~L~~L~l~~n-~i~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~  168 (332)
T 2ft3_A           99 SPLRKLQKLYISKNH-LVEIPPN------LPSSLVELRIHDN-RIRK-VPKGVFSGLRNMNCIEMGGNP-LENSGFEPGA  168 (332)
T ss_dssp             TTCTTCCEEECCSSC-CCSCCSS------CCTTCCEEECCSS-CCCC-CCSGGGSSCSSCCEEECCSCC-CBGGGSCTTS
T ss_pred             hCcCCCCEEECCCCc-CCccCcc------ccccCCEEECCCC-ccCc-cCHhHhCCCccCCEEECCCCc-cccCCCCccc
Confidence            678889999998664 5554433      3478999999886 4554 454557788999999998764 32210 0011


Q ss_pred             cccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceee
Q 046857          201 LNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYF  280 (439)
Q Consensus       201 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~  280 (439)
                      +.        . .+|+.|+++++ .++.++...     .++|+.|++.++ .+...++.                     
T Consensus       169 ~~--------~-l~L~~L~l~~n-~l~~l~~~~-----~~~L~~L~l~~n-~i~~~~~~---------------------  211 (332)
T 2ft3_A          169 FD--------G-LKLNYLRISEA-KLTGIPKDL-----PETLNELHLDHN-KIQAIELE---------------------  211 (332)
T ss_dssp             SC--------S-CCCSCCBCCSS-BCSSCCSSS-----CSSCSCCBCCSS-CCCCCCTT---------------------
T ss_pred             cc--------C-CccCEEECcCC-CCCccCccc-----cCCCCEEECCCC-cCCccCHH---------------------
Confidence            11        1 27888888876 344444322     267888887774 34333222                     


Q ss_pred             eeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCC
Q 046857          281 LLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCH  360 (439)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  360 (439)
                                 ....+++|+.|+++++ .++.+....+.   .+++|++|+++++ .++.+|..+..+++|++|+++++ 
T Consensus       212 -----------~l~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-  274 (332)
T 2ft3_A          212 -----------DLLRYSKLYRLGLGHN-QIRMIENGSLS---FLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-  274 (332)
T ss_dssp             -----------SSTTCTTCSCCBCCSS-CCCCCCTTGGG---GCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-
T ss_pred             -----------HhcCCCCCCEEECCCC-cCCcCChhHhh---CCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-
Confidence                       1334567777777764 34444333232   6778888888876 46677777778888888888874 


Q ss_pred             CcccccChhHHhh-----ccccceEEEcccccch-hhccccccccCCCceEeccccEEecCCCC
Q 046857          361 GLINVLTLSASKN-----LVNLGRMKIVDCKMME-EIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       361 ~l~~l~p~~~~~~-----l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      +++.+.+..+...     .++|+.|++.+++... .+..       ..+..+++|+.++++++.
T Consensus       275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-------~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-------ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG-------GGGTTBCCSTTEEC----
T ss_pred             CCCccChhHccccccccccccccceEeecCcccccccCc-------ccccccchhhhhhccccc
Confidence            5776633322211     3567888888774221 1211       145567777777777653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.77  E-value=5.5e-18  Score=166.69  Aligned_cols=339  Identities=18%  Similarity=0.140  Sum_probs=148.3

Q ss_pred             CCCccccCceEEEccccccceecccccccccc-----ccccccccceeeccccccccccccccCccCCCCccEEeeccCC
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKE-----NRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCP   79 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~   79 (439)
                      +++++++|++|++++|...+.+|..++....-     ......++++|+++++ ++..++.     ..++|++|+++++ 
T Consensus        29 ~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~-----~~~~L~~L~l~~n-  101 (454)
T 1jl5_A           29 EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE-----LPPHLESLVASCN-  101 (454)
T ss_dssp             -----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS-----CCTTCSEEECCSS-
T ss_pred             hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC-----CcCCCCEEEccCC-
Confidence            36667777777777776555555554421100     0000012344555542 1222211     1245555555553 


Q ss_pred             CccccccCCcCccCccceeecCceeeecCcC----------chhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCc
Q 046857           80 NMKTFSQGIVSTPKLHEVQEEGELCRWEGNL----------NSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPV  149 (439)
Q Consensus        80 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~  149 (439)
                      .++.+|..   .++|++|+++++.+......          ++.+..+| .+..+++|++|+++++. +..++.      
T Consensus       102 ~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~------  170 (454)
T 1jl5_A          102 SLTELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD------  170 (454)
T ss_dssp             CCSSCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCC------
T ss_pred             cCCccccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCC------
Confidence            33334432   24444444444332211100          01222233 34456666666666543 333221      


Q ss_pred             CccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccccc
Q 046857          150 RFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRF  229 (439)
Q Consensus       150 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  229 (439)
                       ..++|++|+++++ .++. +| . +..+++|++|++++|. +..++.             ..++|++|+++++ .++.+
T Consensus       171 -~~~~L~~L~L~~n-~l~~-l~-~-~~~l~~L~~L~l~~N~-l~~l~~-------------~~~~L~~L~l~~n-~l~~l  230 (454)
T 1jl5_A          171 -LPPSLEFIAAGNN-QLEE-LP-E-LQNLPFLTAIYADNNS-LKKLPD-------------LPLSLESIVAGNN-ILEEL  230 (454)
T ss_dssp             -CCTTCCEEECCSS-CCSS-CC-C-CTTCTTCCEEECCSSC-CSSCCC-------------CCTTCCEEECCSS-CCSSC
T ss_pred             -CcccccEEECcCC-cCCc-Cc-c-ccCCCCCCEEECCCCc-CCcCCC-------------CcCcccEEECcCC-cCCcc
Confidence             2346677776665 3443 34 2 5666677777776652 222211             1246666776665 34444


Q ss_pred             ccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeee---------ccccccccccccccCc
Q 046857          230 CNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLL---------AHQVQPLFDEKVAFPQ  298 (439)
Q Consensus       230 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~---------~~~~~~~~~~~~~~~~  298 (439)
                      +. .   ..+++|+.|++.++ .+..++.     .+++|+.|  +.+.+.+++..         ........  ...+++
T Consensus       231 p~-~---~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l--~~~~~~  298 (454)
T 1jl5_A          231 PE-L---QNLPFLTTIYADNN-LLKTLPD-----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL--SELPPN  298 (454)
T ss_dssp             CC-C---TTCTTCCEEECCSS-CCSSCCS-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE--SCCCTT
T ss_pred             cc-c---CCCCCCCEEECCCC-cCCcccc-----cccccCEEECCCCcccccCcccCcCCEEECcCCccCcc--cCcCCc
Confidence            42 2   25666777777664 3333321     22455554  33333332110         00000000  011234


Q ss_pred             cceEeecCCCCceeccccCCcccccc-CCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhcccc
Q 046857          299 LRKLRLSGLHKVQHLWKENDESNKVF-ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNL  377 (439)
Q Consensus       299 L~~L~l~~~~~l~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L  377 (439)
                      |+.|+++++ .+..+.        .+ ++|++|+++++ .++.+|..   +++|++|++++| +++.+ |.    .+++|
T Consensus       299 L~~L~l~~N-~l~~i~--------~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~l~~l-p~----~l~~L  359 (454)
T 1jl5_A          299 LYYLNASSN-EIRSLC--------DLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEV-PE----LPQNL  359 (454)
T ss_dssp             CCEEECCSS-CCSEEC--------CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCC-CC----CCTTC
T ss_pred             CCEEECcCC-cCCccc--------CCcCcCCEEECCCC-cccccccc---CCcCCEEECCCC-ccccc-cc----hhhhc
Confidence            555555443 222211        22 47788888775 34455543   578888888875 46665 54    36788


Q ss_pred             ceEEEcccccchhhccccccccCCCceEe-------------ccccEEecCCCC
Q 046857          378 GRMKIVDCKMMEEIIQSQVGEETEDCIVF-------------GKLRYLELDCLP  418 (439)
Q Consensus       378 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~l-------------~~L~~l~l~~c~  418 (439)
                      +.|+++++ .+..++.     .+..+..+             ++|++|++++++
T Consensus       360 ~~L~L~~N-~l~~l~~-----ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          360 KQLHVEYN-PLREFPD-----IPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CEEECCSS-CCSSCCC-----CCTTCCEEECCC---------------------
T ss_pred             cEEECCCC-CCCcCCC-----ChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            88888887 4433211     00133333             678888877754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=1e-17  Score=170.90  Aligned_cols=285  Identities=14%  Similarity=0.128  Sum_probs=183.2

Q ss_pred             cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY  118 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  118 (439)
                      .+++++.|+++++ .+..++.. .+..+++|++|++++|. +..++ ..++.+++|++|++++|.+.          .++
T Consensus        49 ~l~~l~~l~l~~~-~l~~lp~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~  115 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKLPAA-LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIR----------YLP  115 (597)
T ss_dssp             GGCCCSEEEESSC-EESEECTH-HHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCC----------CCC
T ss_pred             cCCCceEEEeeCC-CCCCcCHH-HHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCC----------CCC
Confidence            4667778887772 33333221 13457888888888864 55444 46777888888888774322          222


Q ss_pred             -hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcc
Q 046857          119 -EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH  197 (439)
Q Consensus       119 -~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  197 (439)
                       ..+..+++|+.|+++++. +..++...   ...+++|+.|+++++ .++...| ..+..+++|++|+++++. +..++ 
T Consensus       116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~-  187 (597)
T 3oja_B          116 PHVFQNVPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNLQLSSNR-LTHVD-  187 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECTTSC-CSBCC-
T ss_pred             HHHHcCCCCCCEEEeeCCC-CCCCCHHH---hccCCCCCEEEeeCC-cCCCCCh-hhhhcCCcCcEEECcCCC-CCCcC-
Confidence             224467778888887654 54444332   135777888888776 4555333 336777888888887653 32221 


Q ss_pred             ccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcc
Q 046857          198 LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLE  277 (439)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~  277 (439)
                      +          . .+++|+.|+++++ .+..+       ...++|+.|++.++ .+..++                    
T Consensus       188 ~----------~-~l~~L~~L~l~~n-~l~~l-------~~~~~L~~L~ls~n-~l~~~~--------------------  227 (597)
T 3oja_B          188 L----------S-LIPSLFHANVSYN-LLSTL-------AIPIAVEELDASHN-SINVVR--------------------  227 (597)
T ss_dssp             G----------G-GCTTCSEEECCSS-CCSEE-------ECCTTCSEEECCSS-CCCEEE--------------------
T ss_pred             h----------h-hhhhhhhhhcccC-ccccc-------cCCchhheeeccCC-cccccc--------------------
Confidence            0          1 1377777777765 23222       13356777777664 233221                    


Q ss_pred             eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEc
Q 046857          278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVS  357 (439)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~  357 (439)
                                     ...+++|+.|+++++. +...  ..+   ..+++|++|+++++..-...|..+..+++|++|+++
T Consensus       228 ---------------~~~~~~L~~L~L~~n~-l~~~--~~l---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          228 ---------------GPVNVELTILKLQHNN-LTDT--AWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             ---------------CSCCSCCCEEECCSSC-CCCC--GGG---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             ---------------cccCCCCCEEECCCCC-CCCC--hhh---ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence                           1234689999999864 4332  112   278999999999986555556778899999999999


Q ss_pred             cCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          358 KCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       358 ~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      ++ .++.+ |.. ...+++|+.|++++| .+..++.        .+..+++|++|++++|+
T Consensus       287 ~N-~l~~l-~~~-~~~l~~L~~L~Ls~N-~l~~i~~--------~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          287 NN-RLVAL-NLY-GQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             TS-CCCEE-ECS-SSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSSC
T ss_pred             CC-CCCCC-Ccc-cccCCCCcEEECCCC-CCCccCc--------ccccCCCCCEEECCCCC
Confidence            85 57776 442 356899999999998 6666654        46678899999988763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=5.2e-17  Score=153.24  Aligned_cols=292  Identities=12%  Similarity=0.065  Sum_probs=186.7

Q ss_pred             ccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-CCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857           43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM  121 (439)
Q Consensus        43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~  121 (439)
                      +++.+++++ .++..++..    ..++|+.|+++++ .++.++. .++.+++|++|+++++.+...         .|..+
T Consensus        32 ~l~~l~~~~-~~l~~lp~~----~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~   96 (330)
T 1xku_A           32 HLRVVQCSD-LGLEKVPKD----LPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKI---------SPGAF   96 (330)
T ss_dssp             ETTEEECTT-SCCCSCCCS----CCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCB---------CTTTT
T ss_pred             CCeEEEecC-CCccccCcc----CCCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCee---------CHHHh
Confidence            677777776 233444321    2478889999886 4665554 578889999999888443311         14455


Q ss_pred             cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857          122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL  201 (439)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  201 (439)
                      ..+++|++|+++++. +.+++..      .+++|++|+++++ .++. ++...+..+++|++|+++++.. .....    
T Consensus        97 ~~l~~L~~L~Ls~n~-l~~l~~~------~~~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~----  162 (330)
T 1xku_A           97 APLVKLERLYLSKNQ-LKELPEK------MPKTLQELRVHEN-EITK-VRKSVFNGLNQMIVVELGTNPL-KSSGI----  162 (330)
T ss_dssp             TTCTTCCEEECCSSC-CSBCCSS------CCTTCCEEECCSS-CCCB-BCHHHHTTCTTCCEEECCSSCC-CGGGB----
T ss_pred             cCCCCCCEEECCCCc-CCccChh------hcccccEEECCCC-cccc-cCHhHhcCCccccEEECCCCcC-CccCc----
Confidence            678899999998664 5554433      3578999999886 4555 4555588899999999998643 21100    


Q ss_pred             ccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeee
Q 046857          202 NADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFL  281 (439)
Q Consensus       202 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~  281 (439)
                        ....+..+ ++|+.|+++++ .++.++...     .++|+.|++.++ .+....+.                      
T Consensus       163 --~~~~~~~l-~~L~~L~l~~n-~l~~l~~~~-----~~~L~~L~l~~n-~l~~~~~~----------------------  210 (330)
T 1xku_A          163 --ENGAFQGM-KKLSYIRIADT-NITTIPQGL-----PPSLTELHLDGN-KITKVDAA----------------------  210 (330)
T ss_dssp             --CTTGGGGC-TTCCEEECCSS-CCCSCCSSC-----CTTCSEEECTTS-CCCEECTG----------------------
T ss_pred             --ChhhccCC-CCcCEEECCCC-ccccCCccc-----cccCCEEECCCC-cCCccCHH----------------------
Confidence              01112224 88999999887 355554332     378899988885 34444322                      


Q ss_pred             eccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCC
Q 046857          282 LAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHG  361 (439)
Q Consensus       282 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~  361 (439)
                                ....+++|+.|+++++ .++.+....+.   .+++|++|++++| .++.+|..+..+++|++|+++++ .
T Consensus       211 ----------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~  274 (330)
T 1xku_A          211 ----------SLKGLNNLAKLGLSFN-SISAVDNGSLA---NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-N  274 (330)
T ss_dssp             ----------GGTTCTTCCEEECCSS-CCCEECTTTGG---GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-C
T ss_pred             ----------HhcCCCCCCEEECCCC-cCceeChhhcc---CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-c
Confidence                      2335678888888875 35555443333   6789999999887 56688888888999999999885 5


Q ss_pred             cccccChhHH-----hhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857          362 LINVLTLSAS-----KNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL  417 (439)
Q Consensus       362 l~~l~p~~~~-----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c  417 (439)
                      ++.+.+..+.     ...++|+.+++.+++ +......     +..+..++.++.++++++
T Consensus       275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~-----~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQ-----PSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSC-----GGGGTTCCCGGGEEC---
T ss_pred             CCccChhhcCCcccccccccccceEeecCc-ccccccC-----ccccccccceeEEEeccc
Confidence            7776333221     123678888888774 2221110     114455667777777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=1.5e-16  Score=150.08  Aligned_cols=289  Identities=12%  Similarity=0.106  Sum_probs=191.5

Q ss_pred             ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCC
Q 046857           10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGI   88 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~   88 (439)
                      .+++.++++++. ++.+|..+          .+++++|+++++ ++..++. ..+..+++|++|++++|. +..+ |..+
T Consensus        31 c~l~~l~~~~~~-l~~lp~~~----------~~~l~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~   96 (330)
T 1xku_A           31 CHLRVVQCSDLG-LEKVPKDL----------PPDTALLDLQNN-KITEIKD-GDFKNLKNLHTLILINNK-ISKISPGAF   96 (330)
T ss_dssp             EETTEEECTTSC-CCSCCCSC----------CTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSSC-CCCBCTTTT
T ss_pred             CCCeEEEecCCC-ccccCccC----------CCCCeEEECCCC-cCCEeCh-hhhccCCCCCEEECCCCc-CCeeCHHHh
Confidence            378888888764 55566532          469999999993 4444432 136789999999999974 5554 7889


Q ss_pred             cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccc
Q 046857           89 VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSS  168 (439)
Q Consensus        89 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~  168 (439)
                      +.+++|++|+++++.+.          .+|..+  +++|++|+++++. +..++...   ...+++|+.|+++++..-..
T Consensus        97 ~~l~~L~~L~Ls~n~l~----------~l~~~~--~~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~l~~~  160 (330)
T 1xku_A           97 APLVKLERLYLSKNQLK----------ELPEKM--PKTLQELRVHENE-ITKVRKSV---FNGLNQMIVVELGTNPLKSS  160 (330)
T ss_dssp             TTCTTCCEEECCSSCCS----------BCCSSC--CTTCCEEECCSSC-CCBBCHHH---HTTCTTCCEEECCSSCCCGG
T ss_pred             cCCCCCCEEECCCCcCC----------ccChhh--cccccEEECCCCc-ccccCHhH---hcCCccccEEECCCCcCCcc
Confidence            99999999999995433          333332  3789999999765 44433221   13689999999998743221


Q ss_pred             ccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccccc-ccCCCcccCCCCccEEeE
Q 046857          169 AIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRF-CNFTGNIIEMPMLWSLTI  247 (439)
Q Consensus       169 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~L~~L~l  247 (439)
                      ......+..+++|++|+++++ .+..++.            ..+++|++|+++++. ++.+ +...   ..+++|+.|++
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~n-~l~~l~~------------~~~~~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~L  223 (330)
T 1xku_A          161 GIENGAFQGMKKLSYIRIADT-NITTIPQ------------GLPPSLTELHLDGNK-ITKVDAASL---KGLNNLAKLGL  223 (330)
T ss_dssp             GBCTTGGGGCTTCCEEECCSS-CCCSCCS------------SCCTTCSEEECTTSC-CCEECTGGG---TTCTTCCEEEC
T ss_pred             CcChhhccCCCCcCEEECCCC-ccccCCc------------cccccCCEEECCCCc-CCccCHHHh---cCCCCCCEEEC
Confidence            122334788999999999986 3443322            123899999999984 4443 2222   47899999999


Q ss_pred             ecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCc
Q 046857          248 ENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANL  327 (439)
Q Consensus       248 ~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L  327 (439)
                      .++ .+...++.                                ....+++|+.|+++++ .++.++.. +.   .+++|
T Consensus       224 s~n-~l~~~~~~--------------------------------~~~~l~~L~~L~L~~N-~l~~lp~~-l~---~l~~L  265 (330)
T 1xku_A          224 SFN-SISAVDNG--------------------------------SLANTPHLRELHLNNN-KLVKVPGG-LA---DHKYI  265 (330)
T ss_dssp             CSS-CCCEECTT--------------------------------TGGGSTTCCEEECCSS-CCSSCCTT-TT---TCSSC
T ss_pred             CCC-cCceeChh--------------------------------hccCCCCCCEEECCCC-cCccCChh-hc---cCCCc
Confidence            985 45544332                                1335678888888876 45544332 22   67888


Q ss_pred             ceEEeecCCCcccccCCCc-------cCCCcceEEEccCCCcccc-cChhHHhhccccceEEEccc
Q 046857          328 ERLEISECSKLQKLVPPSW-------HLENLWGLQVSKCHGLINV-LTLSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       328 ~~L~l~~c~~l~~l~~~~~-------~l~~L~~L~l~~c~~l~~l-~p~~~~~~l~~L~~L~l~~c  385 (439)
                      ++|+++++. ++.++....       ..+.++.+++.+.+ +..+ ++...+..+++++.++++++
T Consensus       266 ~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          266 QVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             CEEECCCCc-CCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence            899888874 555543322       35788899998854 4432 24345667788888888765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.74  E-value=1e-16  Score=151.26  Aligned_cols=286  Identities=11%  Similarity=0.099  Sum_probs=190.1

Q ss_pred             ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCC
Q 046857           10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGI   88 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~   88 (439)
                      ..++.++++++. ++.+|..          .+++|++|+++++ ++..++. ..+..+++|++|++++|. +..+ |..+
T Consensus        33 c~l~~l~~~~~~-l~~ip~~----------~~~~l~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~   98 (332)
T 2ft3_A           33 CHLRVVQCSDLG-LKAVPKE----------ISPDTTLLDLQNN-DISELRK-DDFKGLQHLYALVLVNNK-ISKIHEKAF   98 (332)
T ss_dssp             EETTEEECCSSC-CSSCCSC----------CCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECGGGS
T ss_pred             ccCCEEECCCCC-ccccCCC----------CCCCCeEEECCCC-cCCccCH-hHhhCCCCCcEEECCCCc-cCccCHhHh
Confidence            478999998875 5666654          2479999999993 3444422 236789999999999974 5554 7788


Q ss_pred             cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccc
Q 046857           89 VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSS  168 (439)
Q Consensus        89 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~  168 (439)
                      +.+++|++|+++++.+.          .+|..+.  ++|++|+++++. +..++...   ...+++|+.|++.++. ++.
T Consensus        99 ~~l~~L~~L~L~~n~l~----------~l~~~~~--~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~l~~n~-l~~  161 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLV----------EIPPNLP--SSLVELRIHDNR-IRKVPKGV---FSGLRNMNCIEMGGNP-LEN  161 (332)
T ss_dssp             TTCTTCCEEECCSSCCC----------SCCSSCC--TTCCEEECCSSC-CCCCCSGG---GSSCSSCCEEECCSCC-CBG
T ss_pred             hCcCCCCEEECCCCcCC----------ccCcccc--ccCCEEECCCCc-cCccCHhH---hCCCccCCEEECCCCc-ccc
Confidence            99999999999995433          3333332  789999999765 55544332   2468999999999874 431


Q ss_pred             --ccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccc-cCCCcccCCCCccEE
Q 046857          169 --AIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFC-NFTGNIIEMPMLWSL  245 (439)
Q Consensus       169 --~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~L~~L  245 (439)
                        ..+. .+..+ +|++|+++++ .+..++.            ..+++|++|+++++. ++.++ ...   ..+++|+.|
T Consensus       162 ~~~~~~-~~~~l-~L~~L~l~~n-~l~~l~~------------~~~~~L~~L~l~~n~-i~~~~~~~l---~~l~~L~~L  222 (332)
T 2ft3_A          162 SGFEPG-AFDGL-KLNYLRISEA-KLTGIPK------------DLPETLNELHLDHNK-IQAIELEDL---LRYSKLYRL  222 (332)
T ss_dssp             GGSCTT-SSCSC-CCSCCBCCSS-BCSSCCS------------SSCSSCSCCBCCSSC-CCCCCTTSS---TTCTTCSCC
T ss_pred             CCCCcc-cccCC-ccCEEECcCC-CCCccCc------------cccCCCCEEECCCCc-CCccCHHHh---cCCCCCCEE
Confidence              2233 35556 8999999986 3444332            123799999999874 44433 222   377899999


Q ss_pred             eEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccC
Q 046857          246 TIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFA  325 (439)
Q Consensus       246 ~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~  325 (439)
                      ++.++ .+..+++.                                ....+++|+.|+++++ .++.++.. +.   .++
T Consensus       223 ~L~~N-~l~~~~~~--------------------------------~~~~l~~L~~L~L~~N-~l~~lp~~-l~---~l~  264 (332)
T 2ft3_A          223 GLGHN-QIRMIENG--------------------------------SLSFLPTLRELHLDNN-KLSRVPAG-LP---DLK  264 (332)
T ss_dssp             BCCSS-CCCCCCTT--------------------------------GGGGCTTCCEEECCSS-CCCBCCTT-GG---GCT
T ss_pred             ECCCC-cCCcCChh--------------------------------HhhCCCCCCEEECCCC-cCeecChh-hh---cCc
Confidence            99885 44444322                                1345678888888875 45555433 22   678


Q ss_pred             CcceEEeecCCCcccccCCCc-------cCCCcceEEEccCCCcc--cccChhHHhhccccceEEEcccc
Q 046857          326 NLERLEISECSKLQKLVPPSW-------HLENLWGLQVSKCHGLI--NVLTLSASKNLVNLGRMKIVDCK  386 (439)
Q Consensus       326 ~L~~L~l~~c~~l~~l~~~~~-------~l~~L~~L~l~~c~~l~--~l~p~~~~~~l~~L~~L~l~~c~  386 (439)
                      +|++|+++++ .++.++....       ..+.|+.|++.+++ +.  .+ +...+..+++|+.++++++.
T Consensus       265 ~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~-~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          265 LLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEV-QPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGS-CGGGGTTBCCSTTEEC----
T ss_pred             cCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-cccccc-Ccccccccchhhhhhccccc
Confidence            8888888876 3555543221       25678899998865 43  33 44456778899999888763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=2.5e-17  Score=155.14  Aligned_cols=88  Identities=11%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE  120 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~  120 (439)
                      +++++.|++++ .++..++.  .+..+++|++|+++++ .+..+|..++.+++|++|++++|.          +..+|..
T Consensus        80 ~~~l~~L~L~~-n~l~~lp~--~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~----------l~~lp~~  145 (328)
T 4fcg_A           80 QPGRVALELRS-VPLPQFPD--QAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP----------LRALPAS  145 (328)
T ss_dssp             STTCCEEEEES-SCCSSCCS--CGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC----------CCCCCGG
T ss_pred             ccceeEEEccC-CCchhcCh--hhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc----------cccCcHH
Confidence            45666666666 23333322  2555667777777664 344666666666677777666622          2234445


Q ss_pred             hcCCCCccEEEccCCCCceeec
Q 046857          121 MIGFRDIQYLQLSHFPRLKEIW  142 (439)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~i~  142 (439)
                      +..+++|+.|++++|.....++
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p  167 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELP  167 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCC
T ss_pred             HhcCcCCCEEECCCCCCccccC
Confidence            5556666666666655444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=3e-17  Score=154.62  Aligned_cols=83  Identities=23%  Similarity=0.235  Sum_probs=46.5

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhc
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL  374 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l  374 (439)
                      .+++|+.|+++++...+.++.. +.   .+++|++|++++|...+.+|..+..+++|++|++++|+.++.+ |.. +..+
T Consensus       227 ~l~~L~~L~Ls~n~~~~~~p~~-~~---~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i-P~~-l~~L  300 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRNYPPI-FG---GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSL-IAQL  300 (328)
T ss_dssp             GCTTCCEEECTTCTTCCBCCCC-TT---CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC-CGG-GGGS
T ss_pred             cCCCCCEEECcCCcchhhhHHH-hc---CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc-cHH-Hhhc
Confidence            4556666666655444433221 11   4566666666666666666666666666666666666555554 543 3456


Q ss_pred             cccceEEEc
Q 046857          375 VNLGRMKIV  383 (439)
Q Consensus       375 ~~L~~L~l~  383 (439)
                      ++|+.+++.
T Consensus       301 ~~L~~l~l~  309 (328)
T 4fcg_A          301 PANCIILVP  309 (328)
T ss_dssp             CTTCEEECC
T ss_pred             cCceEEeCC
Confidence            666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.74  E-value=3.1e-19  Score=182.08  Aligned_cols=342  Identities=13%  Similarity=0.056  Sum_probs=201.1

Q ss_pred             cCceEEEccccccceeccccccccccccccccccceeeccccccccccc---cccCccCCCCccEEeeccCCCc----cc
Q 046857           11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCPNM----KT   83 (439)
Q Consensus        11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l----~~   83 (439)
                      +|++|+|.+|..+....  ...    -...+++|++|+++++. +.+..   .......+++|++|+++++..-    ..
T Consensus       139 ~L~~L~L~~~~~~~~~~--l~~----~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~  211 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDG--LLS----IVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD  211 (592)
T ss_dssp             GCCEEEEESCEEEEHHH--HHH----HHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred             cCcEEECcCCCCcCHHH--HHH----HHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence            39999999987433210  000    00147888888888863 21111   0011345788888888775432    23


Q ss_pred             cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCc----------------eee-----c
Q 046857           84 FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRL----------------KEI-----W  142 (439)
Q Consensus        84 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l----------------~~i-----~  142 (439)
                      ++..+..+++|++|+++++.          +..++..+..+++|++|.++.....                +.+     .
T Consensus       212 l~~~~~~~~~L~~L~L~~~~----------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  281 (592)
T 3ogk_B          212 LETIARNCRSLVSVKVGDFE----------ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG  281 (592)
T ss_dssp             HHHHHHHCTTCCEEECSSCB----------GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC
T ss_pred             HHHHHhhCCCCcEEeccCcc----------HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc
Confidence            44445667888888887732          2224444445566666666421110                000     0


Q ss_pred             CCCCCC--cCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEec
Q 046857          143 HGQALP--VRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTL  220 (439)
Q Consensus       143 ~~~~l~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  220 (439)
                      ... ++  ...+++|++|++++|. +++......+..+++|++|++.++..-..+..+.         . .+++|++|++
T Consensus       282 ~~~-l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~---------~-~~~~L~~L~L  349 (592)
T 3ogk_B          282 PNE-MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA---------Q-YCKQLKRLRI  349 (592)
T ss_dssp             TTT-GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH---------H-HCTTCCEEEE
T ss_pred             hhH-HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH---------H-hCCCCCEEEe
Confidence            000 11  1357899999999987 6543333446889999999998432212222111         1 1389999999


Q ss_pred             CC----------cccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--C----ccCcceeeeecc
Q 046857          221 ID----------LPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--Q----KLTLEEYFLLAH  284 (439)
Q Consensus       221 ~~----------~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~----~~~l~~~~~~~~  284 (439)
                      .+          |..++...... ....+++|++|++ .|..+.......+...+++|++|  .    ++.+++.+.  +
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~-l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~--~  425 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIA-LAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL--D  425 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHH-HHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC--H
T ss_pred             ecCccccccccccCccCHHHHHH-HHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH--H
Confidence            95          66554321111 1236899999999 44666655444444558888888  2    555554211  0


Q ss_pred             ccccccccccccCccceEeecCCCC-ceeccccCCccccccCCcceEEeecCCCcc-cccCCCccCCCcceEEEccCCCc
Q 046857          285 QVQPLFDEKVAFPQLRKLRLSGLHK-VQHLWKENDESNKVFANLERLEISECSKLQ-KLVPPSWHLENLWGLQVSKCHGL  362 (439)
Q Consensus       285 ~~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l  362 (439)
                      .+.+.  ....+++|++|+++.|.+ +.......  +...+++|++|++++|..-. .++..+..+++|++|++++|+ +
T Consensus       426 ~~~~~--~~~~~~~L~~L~L~~~~~~l~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l  500 (592)
T 3ogk_B          426 NGVRS--LLIGCKKLRRFAFYLRQGGLTDLGLSY--IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-F  500 (592)
T ss_dssp             HHHHH--HHHHCTTCCEEEEECCGGGCCHHHHHH--HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-C
T ss_pred             HHHHH--HHHhCCCCCEEEEecCCCCccHHHHHH--HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-C
Confidence            00000  123578999999977653 22221111  11257899999999886322 234445678999999999997 6


Q ss_pred             ccccChhHHhhccccceEEEcccccchhh
Q 046857          363 INVLTLSASKNLVNLGRMKIVDCKMMEEI  391 (439)
Q Consensus       363 ~~l~p~~~~~~l~~L~~L~l~~c~~l~~~  391 (439)
                      ++.....+...+++|+.|++++|. ++..
T Consensus       501 ~~~~~~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          501 SERAIAAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             BHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             cHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence            654344456788999999999995 5443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.73  E-value=1.5e-16  Score=163.26  Aligned_cols=108  Identities=19%  Similarity=0.131  Sum_probs=78.7

Q ss_pred             cCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccc-ccCCCccCCCcceEEEccCCCcccccChhHHhhc
Q 046857          296 FPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQK-LVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL  374 (439)
Q Consensus       296 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l  374 (439)
                      +++++.++++.+ .+.......+.   .+++|+.|+++++..... .|..+..+++|++|++++| +++.++|. .+..+
T Consensus       444 l~~l~~l~ls~n-~l~~~~~~~~~---~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~-~f~~l  517 (635)
T 4g8a_A          444 LRNLIYLDISHT-HTRVAFNGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSL  517 (635)
T ss_dssp             CTTCCEEECTTS-CCEECCTTTTT---TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTC
T ss_pred             cccccccccccc-ccccccccccc---cchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChH-HHcCC
Confidence            345556665553 23333333222   678999999999876664 4566778999999999996 68888554 46789


Q ss_pred             cccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857          375 VNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL  417 (439)
Q Consensus       375 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c  417 (439)
                      ++|+.|+++++ .++.+...       .+..+++|++|+++++
T Consensus       518 ~~L~~L~Ls~N-~l~~l~~~-------~~~~l~~L~~L~Ls~N  552 (635)
T 4g8a_A          518 SSLQVLNMSHN-NFFSLDTF-------PYKCLNSLQVLDYSLN  552 (635)
T ss_dssp             TTCCEEECTTS-CCCBCCCG-------GGTTCTTCCEEECTTS
T ss_pred             CCCCEEECCCC-cCCCCChh-------HHhCCCCCCEEECCCC
Confidence            99999999998 66666432       5677899999999886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=2.9e-19  Score=182.39  Aligned_cols=339  Identities=17%  Similarity=0.132  Sum_probs=168.4

Q ss_pred             ccccCceEEEccccccce--eccccccccccccccccccceeeccccccccccc---cccCccCCCCccEEeeccCC-Cc
Q 046857            8 IPNSLVNLNVSYCEKIEE--IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCP-NM   81 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~-~l   81 (439)
                      .+++|++|+|.+|..+..  ++....        .+++|++|++++|. +.+..   .......+++|++|++++|. .+
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~--------~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  198 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAA--------TCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEV  198 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHH--------HCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCC
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHH--------hCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcC
Confidence            578999999999975554  222111        47888899888864 22211   11112357788888888875 22


Q ss_pred             c--ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC-------------------Ccee
Q 046857           82 K--TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP-------------------RLKE  140 (439)
Q Consensus        82 ~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-------------------~l~~  140 (439)
                      .  .++..+..+++|++|++++|         ..+..++..+..+++|++|.+..+.                   .++.
T Consensus       199 ~~~~l~~l~~~~~~L~~L~L~~~---------~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~  269 (594)
T 2p1m_B          199 SFSALERLVTRCPNLKSLKLNRA---------VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC  269 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEECCTT---------SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCE
T ss_pred             CHHHHHHHHHhCCCCcEEecCCC---------CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccc
Confidence            2  23222344688888888773         2223344445556666666654332                   1111


Q ss_pred             e------cCCCCCCc--CccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccc
Q 046857          141 I------WHGQALPV--RFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLF  212 (439)
Q Consensus       141 i------~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  212 (439)
                      +      .... ++.  ..+++|++|++++|. +++......+..+++|++|++.+|..-..+..+.         . .+
T Consensus       270 Ls~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~---------~-~~  337 (594)
T 2p1m_B          270 LSGFWDAVPAY-LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA---------S-TC  337 (594)
T ss_dssp             EECCBTCCGGG-GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH---------H-HC
T ss_pred             ccCCcccchhh-HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH---------H-hC
Confidence            1      0000 111  135677777777765 5443333335567777777777662111111110         0 12


Q ss_pred             cccceEecCCc--------ccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--C------ccCc
Q 046857          213 PRLFSLTLIDL--------PKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--Q------KLTL  276 (439)
Q Consensus       213 ~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~------~~~l  276 (439)
                      ++|++|++.+|        ..+....... ....+++|+.|.+ .|..+.......+...+++|+.|  .      |+.+
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~-l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l  415 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVS-VSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL  415 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHH-HHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHH-HHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence            67777777432        2222111000 0123667777744 33455443333333345666666  2      1333


Q ss_pred             ceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEE
Q 046857          277 EEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQ  355 (439)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~  355 (439)
                      +..+.  +.+...  -...+++|+.|++++  .+.......+.  ..+++|++|++++|......+..+ ..+++|++|+
T Consensus       416 ~~~~~--~~~~~~--l~~~~~~L~~L~L~~--~l~~~~~~~l~--~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~  487 (594)
T 2p1m_B          416 TLEPL--DIGFGA--IVEHCKDLRRLSLSG--LLTDKVFEYIG--TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE  487 (594)
T ss_dssp             TCCCT--HHHHHH--HHHHCTTCCEEECCS--SCCHHHHHHHH--HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred             cCCch--hhHHHH--HHhhCCCccEEeecC--cccHHHHHHHH--HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence            32100  000000  023456777777754  33322111111  136677777777765322211112 3577777777


Q ss_pred             EccCCCcccccChhHHhhccccceEEEccccc
Q 046857          356 VSKCHGLINVLTLSASKNLVNLGRMKIVDCKM  387 (439)
Q Consensus       356 l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~  387 (439)
                      +++|+. ++.....+...+++|+.|++++|+.
T Consensus       488 L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          488 IRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             EESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             CcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            777763 4332223345567777777777744

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.72  E-value=5.6e-17  Score=159.47  Aligned_cols=143  Identities=12%  Similarity=0.031  Sum_probs=74.9

Q ss_pred             CccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCC-------------ccEE
Q 046857            7 GIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPS-------------LERV   73 (439)
Q Consensus         7 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-------------L~~L   73 (439)
                      ...+.|++|+++++.. +.+|..++        .+++|++|+++++.-...++  ..++.+.+             +++|
T Consensus         8 ~~~~~L~~L~l~~n~l-~~iP~~i~--------~L~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~l~l~~c~~~~l~~L   76 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-TEMPVEAE--------NVKSKTEYYNAWSEWERNAP--PGNGEQREMAVSRLRDCLDRQAHEL   76 (454)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHTSC--TTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred             cccccchhhhcccCch-hhCChhHh--------cccchhhhhccCCcccccCC--cccccchhcchhhhhhhhccCCCEE
Confidence            3568899999999875 88888776        58899999999943222232  22555555             4999


Q ss_pred             eeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccC
Q 046857           74 SMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFN  153 (439)
Q Consensus        74 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~  153 (439)
                      ++++| .++.+|..   .++|++|+++++...          .+|.   ..++|++|+++++. +..++.       ..+
T Consensus        77 ~l~~~-~l~~lp~~---~~~L~~L~l~~n~l~----------~lp~---~~~~L~~L~l~~n~-l~~l~~-------~~~  131 (454)
T 1jl5_A           77 ELNNL-GLSSLPEL---PPHLESLVASCNSLT----------ELPE---LPQSLKSLLVDNNN-LKALSD-------LPP  131 (454)
T ss_dssp             ECTTS-CCSCCCSC---CTTCSEEECCSSCCS----------SCCC---CCTTCCEEECCSSC-CSCCCS-------CCT
T ss_pred             EecCC-ccccCCCC---cCCCCEEEccCCcCC----------cccc---ccCCCcEEECCCCc-cCcccC-------CCC
Confidence            99997 57777763   579999999985433          2332   24677888887653 433221       225


Q ss_pred             CccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          154 YLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       154 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      +|++|+++++ .++. +| . ++.+++|++|+++++
T Consensus       132 ~L~~L~L~~n-~l~~-lp-~-~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A          132 LLEYLGVSNN-QLEK-LP-E-LQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TCCEEECCSS-CCSS-CC-C-CTTCTTCCEEECCSS
T ss_pred             CCCEEECcCC-CCCC-Cc-c-cCCCCCCCEEECCCC
Confidence            7777777775 4544 45 2 666777777777765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.69  E-value=1.4e-16  Score=148.97  Aligned_cols=65  Identities=12%  Similarity=-0.008  Sum_probs=34.3

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCccc
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLIN  364 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~  364 (439)
                      .+++|++|+++++. +.......+.   .+++|++|+++++.....+|.. ..+++|+.+++.+++.+..
T Consensus       242 ~l~~L~~L~Ls~N~-l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          242 LSKNLNGLDLRNNR-IYGTLPQGLT---QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCTTCCEEECCSSC-CEECCCGGGG---GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             ccCCCCEEECcCCc-ccCcCChHHh---cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            34566666666543 2211111122   5666777777666444355543 5667777777766554433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.69  E-value=1.2e-18  Score=172.28  Aligned_cols=141  Identities=19%  Similarity=0.174  Sum_probs=60.6

Q ss_pred             cccccceeeccccccccccc---cccCccCCCCccEEeeccCCCccc-cccC-CcCcc----CccceeecCceeeecCcC
Q 046857           40 AFSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCPNMKT-FSQG-IVSTP----KLHEVQEEGELCRWEGNL  110 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~-l~~~-~~~l~----~L~~L~l~~~~~~~~~~~  110 (439)
                      .+++|++|++++|. +.+..   ....+..+++|++|+++++. +.. .+.. ...++    +|++|++++|.+..    
T Consensus        26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~----   99 (461)
T 1z7x_W           26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG----   99 (461)
T ss_dssp             HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG----
T ss_pred             hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCH----
Confidence            35566666666642 11110   01113345666666666643 322 1111 11122    46666666643221    


Q ss_pred             chhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCC---cCccCCccEEEeccccccccccc---hhHHhhcccccee
Q 046857          111 NSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALP---VRFFNYLAELEVDYCTNMSSAIP---ANLLRCLNNLARL  184 (439)
Q Consensus       111 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~---~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L  184 (439)
                       .....++..+..+++|++|+++++. +.+..... +.   ....++|++|++++| .+++...   ...+..+++|++|
T Consensus       100 -~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L  175 (461)
T 1z7x_W          100 -AGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKEL  175 (461)
T ss_dssp             -GGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEE
T ss_pred             -HHHHHHHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEE
Confidence             1223445555556666666666544 32110000 00   012345666666665 3332111   1124445666666


Q ss_pred             eecccc
Q 046857          185 EVRNCD  190 (439)
Q Consensus       185 ~l~~~~  190 (439)
                      +++++.
T Consensus       176 ~L~~n~  181 (461)
T 1z7x_W          176 TVSNND  181 (461)
T ss_dssp             ECCSSB
T ss_pred             ECcCCC
Confidence            666553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.68  E-value=1e-16  Score=150.02  Aligned_cols=107  Identities=15%  Similarity=0.208  Sum_probs=57.7

Q ss_pred             CCccEEeeccCCCcc--ccccCCcCccCccceeecC-ceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCC
Q 046857           68 PSLERVSMTRCPNMK--TFSQGIVSTPKLHEVQEEG-ELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHG  144 (439)
Q Consensus        68 ~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~  144 (439)
                      .++++|+++++..-.  .+|..++.+++|++|++++ +.         ....+|..+..+++|++|+++++.-...++..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~---------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  120 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN---------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF  120 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT---------EESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc---------ccccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence            567777777754333  4666677777777777763 21         11223444455666666666654422233322


Q ss_pred             CCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          145 QALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       145 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      .    ..+++|++|+++++ .++..+|.. +..+++|++|+++++
T Consensus       121 ~----~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A          121 L----SQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGN  159 (313)
T ss_dssp             G----GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSS
T ss_pred             H----hCCCCCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCC
Confidence            1    34566666666654 333334443 555666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=3e-16  Score=149.44  Aligned_cols=179  Identities=15%  Similarity=0.120  Sum_probs=106.1

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      .++|++|+++++ ++..++. ..+..+++|++|+++++ .++.+ |..++.+++|++|++++|.+          ..++.
T Consensus        51 ~~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l----------~~~~~  117 (353)
T 2z80_A           51 TEAVKSLDLSNN-RITYISN-SDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL----------SNLSS  117 (353)
T ss_dssp             CTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC----------SSCCH
T ss_pred             cccCcEEECCCC-cCcccCH-HHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC----------CcCCH
Confidence            458888888883 3444322 12567888888888886 45554 45577788888888887432          23333


Q ss_pred             h-hcCCCCccEEEccCCCCceeecC-CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcc
Q 046857          120 E-MIGFRDIQYLQLSHFPRLKEIWH-GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH  197 (439)
Q Consensus       120 ~-~~~~~~L~~L~l~~~~~l~~i~~-~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  197 (439)
                      . +..+++|++|+++++. +..++. ..   ...+++|++|+++++..++...+ ..+..+++|++|+++++. +....+
T Consensus       118 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~---~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~  191 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGNP-YKTLGETSL---FSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASD-LQSYEP  191 (353)
T ss_dssp             HHHTTCTTCSEEECTTCC-CSSSCSSCS---CTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETT-CCEECT
T ss_pred             hHhCCCccCCEEECCCCC-CcccCchhh---hccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCC-cCccCH
Confidence            3 4567888888888654 444443 11   13577888888887755655333 336777888888887763 222211


Q ss_pred             ccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857          198 LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                              ..+..+ ++|++|+++++. ++.++...  ...+++|+.|++.++
T Consensus       192 --------~~l~~l-~~L~~L~l~~n~-l~~~~~~~--~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          192 --------KSLKSI-QNVSHLILHMKQ-HILLLEIF--VDVTSSVECLELRDT  232 (353)
T ss_dssp             --------TTTTTC-SEEEEEEEECSC-STTHHHHH--HHHTTTEEEEEEESC
T ss_pred             --------HHHhcc-ccCCeecCCCCc-cccchhhh--hhhcccccEEECCCC
Confidence                    011123 677777776653 33332211  123567777777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.66  E-value=2.4e-15  Score=152.76  Aligned_cols=255  Identities=16%  Similarity=0.129  Sum_probs=184.9

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM  121 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~  121 (439)
                      .++++|++++ .++..++..  +  .++|++|++++| .++.+|.   .+++|++|++++|.+          +.+|.  
T Consensus        40 ~~l~~L~ls~-n~L~~lp~~--l--~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l----------~~lp~--   98 (622)
T 3g06_A           40 NGNAVLNVGE-SGLTTLPDC--L--PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQL----------TSLPV--   98 (622)
T ss_dssp             HCCCEEECCS-SCCSCCCSC--C--CTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCC----------SCCCC--
T ss_pred             CCCcEEEecC-CCcCccChh--h--CCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcC----------CcCCC--
Confidence            4689999998 345555332  2  389999999997 6778886   579999999999543          33444  


Q ss_pred             cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857          122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL  201 (439)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  201 (439)
                       .+++|++|+++++. +..++.       .+++|+.|+++++ +++. +|..    +++|++|++++| .+..++.    
T Consensus        99 -~l~~L~~L~Ls~N~-l~~l~~-------~l~~L~~L~L~~N-~l~~-lp~~----l~~L~~L~Ls~N-~l~~l~~----  158 (622)
T 3g06_A           99 -LPPGLLELSIFSNP-LTHLPA-------LPSGLCKLWIFGN-QLTS-LPVL----PPGLQELSVSDN-QLASLPA----  158 (622)
T ss_dssp             -CCTTCCEEEECSCC-CCCCCC-------CCTTCCEEECCSS-CCSC-CCCC----CTTCCEEECCSS-CCSCCCC----
T ss_pred             -CCCCCCEEECcCCc-CCCCCC-------CCCCcCEEECCCC-CCCc-CCCC----CCCCCEEECcCC-cCCCcCC----
Confidence             57899999999764 554332       5788999999987 4665 4543    589999999987 4444332    


Q ss_pred             ccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCccee
Q 046857          202 NADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEY  279 (439)
Q Consensus       202 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~  279 (439)
                               .+++|+.|++.++ .++.++      ..+++|+.|++.++ .+..++.     ..++|+.|  +.+.+..+
T Consensus       159 ---------~~~~L~~L~L~~N-~l~~l~------~~~~~L~~L~Ls~N-~l~~l~~-----~~~~L~~L~L~~N~l~~l  216 (622)
T 3g06_A          159 ---------LPSELCKLWAYNN-QLTSLP------MLPSGLQELSVSDN-QLASLPT-----LPSELYKLWAYNNRLTSL  216 (622)
T ss_dssp             ---------CCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSC
T ss_pred             ---------ccCCCCEEECCCC-CCCCCc------ccCCCCcEEECCCC-CCCCCCC-----ccchhhEEECcCCccccc
Confidence                     2378999999987 455554      25689999999985 4555432     34677777  55555553


Q ss_pred             eeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccC
Q 046857          280 FLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKC  359 (439)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  359 (439)
                      .             ..+++|+.|+++++ .++.++ .      .+++|++|+++++ .++.+|.   .+++|++|++++|
T Consensus       217 ~-------------~~~~~L~~L~Ls~N-~L~~lp-~------~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          217 P-------------ALPSGLKELIVSGN-RLTSLP-V------LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             C-------------CCCTTCCEEECCSS-CCSCCC-C------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred             C-------------CCCCCCCEEEccCC-ccCcCC-C------CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC
Confidence            2             13578999999886 555554 2      6789999999887 5677776   6789999999986


Q ss_pred             CCcccccChhHHhhccccceEEEccccc
Q 046857          360 HGLINVLTLSASKNLVNLGRMKIVDCKM  387 (439)
Q Consensus       360 ~~l~~l~p~~~~~~l~~L~~L~l~~c~~  387 (439)
                       +++.+ |.. +..+++|+.|++++++-
T Consensus       272 -~L~~l-p~~-l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          272 -QLTRL-PES-LIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             -CCCSC-CGG-GGGSCTTCEEECCSCCC
T ss_pred             -CCCcC-CHH-HhhccccCEEEecCCCC
Confidence             57776 764 56889999999998843

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.66  E-value=5.2e-15  Score=150.23  Aligned_cols=261  Identities=19%  Similarity=0.134  Sum_probs=188.5

Q ss_pred             ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCc
Q 046857           10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIV   89 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~   89 (439)
                      .+++.|+++++. +..+|..+          .++|++|+++++ ++..++.     .+++|++|++++| .++.+|.   
T Consensus        40 ~~l~~L~ls~n~-L~~lp~~l----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~---   98 (622)
T 3g06_A           40 NGNAVLNVGESG-LTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV---   98 (622)
T ss_dssp             HCCCEEECCSSC-CSCCCSCC----------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC---
T ss_pred             CCCcEEEecCCC-cCccChhh----------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC---
Confidence            468899999876 56776643          369999999994 4444422     5799999999996 5777876   


Q ss_pred             CccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc
Q 046857           90 STPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA  169 (439)
Q Consensus        90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~  169 (439)
                      .+++|++|++++|.+.          .+|.   .+++|+.|+++++. +..++.       .+++|++|++++| .++. 
T Consensus        99 ~l~~L~~L~Ls~N~l~----------~l~~---~l~~L~~L~L~~N~-l~~lp~-------~l~~L~~L~Ls~N-~l~~-  155 (622)
T 3g06_A           99 LPPGLLELSIFSNPLT----------HLPA---LPSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN-QLAS-  155 (622)
T ss_dssp             CCTTCCEEEECSCCCC----------CCCC---CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-CCSC-
T ss_pred             CCCCCCEEECcCCcCC----------CCCC---CCCCcCEEECCCCC-CCcCCC-------CCCCCCEEECcCC-cCCC-
Confidence            6899999999985433          3333   46889999999765 554332       3589999999987 5654 


Q ss_pred             cchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEec
Q 046857          170 IPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN  249 (439)
Q Consensus       170 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  249 (439)
                      +|.    .+.+|+.|++.++ .+..++.             .+++|+.|+++++ .++.++.      ..++|+.|++.+
T Consensus       156 l~~----~~~~L~~L~L~~N-~l~~l~~-------------~~~~L~~L~Ls~N-~l~~l~~------~~~~L~~L~L~~  210 (622)
T 3g06_A          156 LPA----LPSELCKLWAYNN-QLTSLPM-------------LPSGLQELSVSDN-QLASLPT------LPSELYKLWAYN  210 (622)
T ss_dssp             CCC----CCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCS
T ss_pred             cCC----ccCCCCEEECCCC-CCCCCcc-------------cCCCCcEEECCCC-CCCCCCC------ccchhhEEECcC
Confidence            343    2578999999975 4444431             2489999999987 3555432      347899999988


Q ss_pred             CCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCc
Q 046857          250 CPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANL  327 (439)
Q Consensus       250 c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L  327 (439)
                      + .+..++     ..+++|+.|  +.+.+..++             ..+++|+.|+++++ .++.++.       .+++|
T Consensus       211 N-~l~~l~-----~~~~~L~~L~Ls~N~L~~lp-------------~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L  263 (622)
T 3g06_A          211 N-RLTSLP-----ALPSGLKELIVSGNRLTSLP-------------VLPSELKELMVSGN-RLTSLPM-------LPSGL  263 (622)
T ss_dssp             S-CCSSCC-----CCCTTCCEEECCSSCCSCCC-------------CCCTTCCEEECCSS-CCSCCCC-------CCTTC
T ss_pred             C-cccccC-----CCCCCCCEEEccCCccCcCC-------------CCCCcCcEEECCCC-CCCcCCc-------ccccC
Confidence            5 455543     234778877  666666631             35689999999986 5665542       46899


Q ss_pred             ceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccCh
Q 046857          328 ERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTL  368 (439)
Q Consensus       328 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~  368 (439)
                      +.|++++| .++.+|..+.++++|+.|++++++ +....|.
T Consensus       264 ~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~-l~~~~~~  302 (622)
T 3g06_A          264 LSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP-LSERTLQ  302 (622)
T ss_dssp             CEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC-CCHHHHH
T ss_pred             cEEeCCCC-CCCcCCHHHhhccccCEEEecCCC-CCCcCHH
Confidence            99999998 577889888999999999999965 6554344

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=4.6e-15  Score=146.09  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=17.7

Q ss_pred             cCCccEEEeccccccccccchhHHhhccccceeeeccccccc
Q 046857          152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLE  193 (439)
Q Consensus       152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~  193 (439)
                      +++|++|+++++ .++. ++...+..+++|++|++++|+.++
T Consensus       146 l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~~~~l~  185 (452)
T 3zyi_A          146 LSKLRELWLRNN-PIES-IPSYAFNRVPSLMRLDLGELKKLE  185 (452)
T ss_dssp             CTTCCEEECCSC-CCCE-ECTTTTTTCTTCCEEECCCCTTCC
T ss_pred             cCCCCEEECCCC-Ccce-eCHhHHhcCCcccEEeCCCCCCcc
Confidence            445555555443 2332 232234445555555555444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.65  E-value=7.3e-15  Score=144.15  Aligned_cols=37  Identities=16%  Similarity=0.195  Sum_probs=18.1

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcceEEeecC
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISEC  335 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c  335 (439)
                      .+++|+.|+++++ .++.+....+.   .+++|+.|+++++
T Consensus       253 ~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N  289 (440)
T 3zyj_A          253 NLQSLVEINLAHN-NLTLLPHDLFT---PLHHLERIHLHHN  289 (440)
T ss_dssp             TCTTCCEEECTTS-CCCCCCTTTTS---SCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-CCCccChhHhc---cccCCCEEEcCCC
Confidence            4455566665553 34444333222   4555666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.64  E-value=4.1e-15  Score=145.91  Aligned_cols=225  Identities=16%  Similarity=0.174  Sum_probs=122.7

Q ss_pred             CCCccEEeeccCCCccccc-cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCC
Q 046857           67 FPSLERVSMTRCPNMKTFS-QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQ  145 (439)
Q Consensus        67 l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~  145 (439)
                      .++++.|+++++ .++.++ ..+..+++|++|++++|.+....         +..+.++++|++|+++++. +..++.+.
T Consensus        63 ~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~---------~~~~~~l~~L~~L~L~~n~-l~~~~~~~  131 (440)
T 3zyj_A           63 STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIE---------IGAFNGLANLNTLELFDNR-LTTIPNGA  131 (440)
T ss_dssp             CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEEC---------GGGGTTCSSCCEEECCSSC-CSSCCTTT
T ss_pred             CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccC---------hhhccCCccCCEEECCCCc-CCeeCHhH
Confidence            366777777775 344443 55667777777777774332211         1234456777777777543 44444322


Q ss_pred             CCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccc
Q 046857          146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPK  225 (439)
Q Consensus       146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  225 (439)
                       +  ..+++|++|+++++ .++. ++...+..+++|++|++++++.+..++.        ..+..+ ++|+.|+++++ .
T Consensus       132 -~--~~l~~L~~L~L~~N-~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------~~~~~l-~~L~~L~L~~n-~  196 (440)
T 3zyj_A          132 -F--VYLSKLKELWLRNN-PIES-IPSYAFNRIPSLRRLDLGELKRLSYISE--------GAFEGL-SNLRYLNLAMC-N  196 (440)
T ss_dssp             -S--CSCSSCCEEECCSC-CCCE-ECTTTTTTCTTCCEEECCCCTTCCEECT--------TTTTTC-SSCCEEECTTS-C
T ss_pred             -h--hccccCceeeCCCC-cccc-cCHHHhhhCcccCEeCCCCCCCcceeCc--------chhhcc-cccCeecCCCC-c
Confidence             1  24667777777665 3444 3433466667777777776655544322        011112 66666666665 3


Q ss_pred             ccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeec
Q 046857          226 LKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLS  305 (439)
Q Consensus       226 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  305 (439)
                      ++.++.    ...+++|+.|+++++ .+..+.+.                                ....+++|+.|+++
T Consensus       197 l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~--------------------------------~~~~l~~L~~L~L~  239 (440)
T 3zyj_A          197 LREIPN----LTPLIKLDELDLSGN-HLSAIRPG--------------------------------SFQGLMHLQKLWMI  239 (440)
T ss_dssp             CSSCCC----CTTCSSCCEEECTTS-CCCEECTT--------------------------------TTTTCTTCCEEECT
T ss_pred             Cccccc----cCCCcccCEEECCCC-ccCccChh--------------------------------hhccCccCCEEECC
Confidence            444432    125566666666664 33333222                                12345677777776


Q ss_pred             CCCCceeccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccC
Q 046857          306 GLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKC  359 (439)
Q Consensus       306 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c  359 (439)
                      ++ .++.+....+.   .+++|++|+++++ .++.++.. +..+++|+.|+++++
T Consensus       240 ~n-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          240 QS-QIQVIERNAFD---NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             TC-CCCEECTTSST---TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             CC-ceeEEChhhhc---CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence            64 35555444333   5667777777665 34444433 345677777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.63  E-value=4e-16  Score=146.26  Aligned_cols=246  Identities=12%  Similarity=0.058  Sum_probs=146.1

Q ss_pred             CCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCC
Q 046857           66 EFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHG  144 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~  144 (439)
                      .+++|++|++++| .+..+ |..+..+++|++|++++|.+....          . +..+++|++|+++++. +..++  
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------~-~~~l~~L~~L~Ls~n~-l~~l~--   96 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETL----------D-LESLSTLRTLDLNNNY-VQELL--   96 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEE----------E-ETTCTTCCEEECCSSE-EEEEE--
T ss_pred             cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcch----------h-hhhcCCCCEEECcCCc-ccccc--
Confidence            4567888888886 44444 345667777777777774433211          1 3346677777777553 44322  


Q ss_pred             CCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857          145 QALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       145 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                            ..++|+.|+++++ .++...+.    .+++|++|+++++ .+..+....        +..+ ++|++|+++++.
T Consensus        97 ------~~~~L~~L~l~~n-~l~~~~~~----~~~~L~~L~l~~N-~l~~~~~~~--------~~~l-~~L~~L~Ls~N~  155 (317)
T 3o53_A           97 ------VGPSIETLHAANN-NISRVSCS----RGQGKKNIYLANN-KITMLRDLD--------EGCR-SRVQYLDLKLNE  155 (317)
T ss_dssp             ------ECTTCCEEECCSS-CCSEEEEC----CCSSCEEEECCSS-CCCSGGGBC--------TGGG-SSEEEEECTTSC
T ss_pred             ------CCCCcCEEECCCC-ccCCcCcc----ccCCCCEEECCCC-CCCCccchh--------hhcc-CCCCEEECCCCC
Confidence                  2356777777665 34432221    2456666666654 232221100        0112 566666666552


Q ss_pred             cccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEee
Q 046857          225 KLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRL  304 (439)
Q Consensus       225 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  304 (439)
                       +..+.... ....+++|+.|++.++                        .+..+.           ....+++|+.|++
T Consensus       156 -l~~~~~~~-~~~~l~~L~~L~L~~N------------------------~l~~~~-----------~~~~l~~L~~L~L  198 (317)
T 3o53_A          156 -IDTVNFAE-LAASSDTLEHLNLQYN------------------------FIYDVK-----------GQVVFAKLKTLDL  198 (317)
T ss_dssp             -CCEEEGGG-GGGGTTTCCEEECTTS------------------------CCCEEE-----------CCCCCTTCCEEEC
T ss_pred             -CCcccHHH-HhhccCcCCEEECCCC------------------------cCcccc-----------cccccccCCEEEC
Confidence             22221111 1123455666666553                        233321           1234789999999


Q ss_pred             cCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcc-cccChhHHhhccccceEEEc
Q 046857          305 SGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLI-NVLTLSASKNLVNLGRMKIV  383 (439)
Q Consensus       305 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~l~p~~~~~~l~~L~~L~l~  383 (439)
                      +++ .++.++.. +.   .+++|++|+++++ .++.+|..+..+++|+.|++++++ +. .. ...++..+++|+.+++.
T Consensus       199 s~N-~l~~l~~~-~~---~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~-~~~~~-~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          199 SSN-KLAFMGPE-FQ---SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG-FHCGT-LRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CSS-CCCEECGG-GG---GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC-CBHHH-HHHHHHTCHHHHHHHHH
T ss_pred             CCC-cCCcchhh-hc---ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC-ccCcC-HHHHHhccccceEEECC
Confidence            986 46665443 33   7899999999987 567888888899999999999865 44 43 33456788999999998


Q ss_pred             ccccchhhc
Q 046857          384 DCKMMEEII  392 (439)
Q Consensus       384 ~c~~l~~~~  392 (439)
                      ++..++...
T Consensus       271 ~~~~l~~~~  279 (317)
T 3o53_A          271 TVKKLTGQN  279 (317)
T ss_dssp             HHHHHHSSS
T ss_pred             CchhccCCc
Confidence            887666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.62  E-value=8e-15  Score=144.35  Aligned_cols=156  Identities=21%  Similarity=0.246  Sum_probs=102.3

Q ss_pred             ccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCc
Q 046857           70 LERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPV  149 (439)
Q Consensus        70 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~  149 (439)
                      .+.++..+ ..+..+|.++.  +++++|+++++.+....         +..+..+++|++|+++++. +..+.... +  
T Consensus        56 ~~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~---------~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~--  119 (452)
T 3zyi_A           56 FSKVVCTR-RGLSEVPQGIP--SNTRYLNLMENNIQMIQ---------ADTFRHLHHLEVLQLGRNS-IRQIEVGA-F--  119 (452)
T ss_dssp             SCEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCEEC---------TTTTTTCTTCCEEECCSSC-CCEECTTT-T--
T ss_pred             CcEEEECC-CCcCccCCCCC--CCccEEECcCCcCceEC---------HHHcCCCCCCCEEECCCCc-cCCcChhh-c--
Confidence            35565555 45667776553  67888888874433211         2345568888999998664 55554332 2  


Q ss_pred             CccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccccc
Q 046857          150 RFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRF  229 (439)
Q Consensus       150 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  229 (439)
                      ..+++|++|+++++ .++. ++...+..+++|++|+++++. +..++.        ..+..+ ++|+.|++.++..++.+
T Consensus       120 ~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------~~~~~l-~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          120 NGLASLNTLELFDN-WLTV-IPSGAFEYLSKLRELWLRNNP-IESIPS--------YAFNRV-PSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             TTCTTCCEEECCSS-CCSB-CCTTTSSSCTTCCEEECCSCC-CCEECT--------TTTTTC-TTCCEEECCCCTTCCEE
T ss_pred             cCcccCCEEECCCC-cCCc-cChhhhcccCCCCEEECCCCC-cceeCH--------hHHhcC-CcccEEeCCCCCCcccc
Confidence            35889999999886 4665 455557789999999999863 443322        111223 89999999988888777


Q ss_pred             ccCCCcccCCCCccEEeEecCCCccee
Q 046857          230 CNFTGNIIEMPMLWSLTIENCPDMETF  256 (439)
Q Consensus       230 ~~~~~~~~~~~~L~~L~l~~c~~l~~~  256 (439)
                      +....  ..+++|+.|++.++ .+..+
T Consensus       188 ~~~~~--~~l~~L~~L~L~~n-~l~~~  211 (452)
T 3zyi_A          188 SEGAF--EGLFNLKYLNLGMC-NIKDM  211 (452)
T ss_dssp             CTTTT--TTCTTCCEEECTTS-CCSSC
T ss_pred             Chhhc--cCCCCCCEEECCCC-ccccc
Confidence            55332  46788999999885 44443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.62  E-value=2.2e-16  Score=147.97  Aligned_cols=246  Identities=12%  Similarity=0.009  Sum_probs=164.0

Q ss_pred             cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      .+++|++|+++++ ++..++. ..+..+++|++|++++| .+..++. +..+++|++|++++|.+....           
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-----------   96 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELL-----------   96 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEE-----------
T ss_pred             cCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCcccccc-----------
Confidence            4679999999993 3343321 12667999999999997 4554444 788999999999996544221           


Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                         ..++|++|+++++. +..++.      ..+++|++|+++++ .++...+ ..+..+++|++|+++++. +..+....
T Consensus        97 ---~~~~L~~L~l~~n~-l~~~~~------~~~~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~  163 (317)
T 3o53_A           97 ---VGPSIETLHAANNN-ISRVSC------SRGQGKKNIYLANN-KITMLRD-LDEGCRSRVQYLDLKLNE-IDTVNFAE  163 (317)
T ss_dssp             ---ECTTCCEEECCSSC-CSEEEE------CCCSSCEEEECCSS-CCCSGGG-BCTGGGSSEEEEECTTSC-CCEEEGGG
T ss_pred             ---CCCCcCEEECCCCc-cCCcCc------cccCCCCEEECCCC-CCCCccc-hhhhccCCCCEEECCCCC-CCcccHHH
Confidence               24789999999765 554433      24788999999886 5665433 337788999999999863 43322110


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCccee
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEY  279 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~  279 (439)
                       +      ...+ ++|++|+++++. ++.++..    ..+++|+.|++.++ .+..+++.                    
T Consensus       164 -~------~~~l-~~L~~L~L~~N~-l~~~~~~----~~l~~L~~L~Ls~N-~l~~l~~~--------------------  209 (317)
T 3o53_A          164 -L------AASS-DTLEHLNLQYNF-IYDVKGQ----VVFAKLKTLDLSSN-KLAFMGPE--------------------  209 (317)
T ss_dssp             -G------GGGT-TTCCEEECTTSC-CCEEECC----CCCTTCCEEECCSS-CCCEECGG--------------------
T ss_pred             -H------hhcc-CcCCEEECCCCc-Ccccccc----cccccCCEEECCCC-cCCcchhh--------------------
Confidence             0      0113 899999999984 5554322    25799999999985 45554322                    


Q ss_pred             eeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCc-ccccCCCccCCCcceEEEcc
Q 046857          280 FLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKL-QKLVPPSWHLENLWGLQVSK  358 (439)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~  358 (439)
                                   ...+++|+.|+++++ .++.++.. +.   .+++|+.|++++++.. ..++..+..+++|+.+++.+
T Consensus       210 -------------~~~l~~L~~L~L~~N-~l~~l~~~-~~---~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          210 -------------FQSAAGVTWISLRNN-KLVLIEKA-LR---FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             -------------GGGGTTCSEEECTTS-CCCEECTT-CC---CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             -------------hcccCcccEEECcCC-cccchhhH-hh---cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence                         335567788887775 45555432 22   6678888888877655 34555566777788877776


Q ss_pred             CCCcccc
Q 046857          359 CHGLINV  365 (439)
Q Consensus       359 c~~l~~l  365 (439)
                      ++.++..
T Consensus       272 ~~~l~~~  278 (317)
T 3o53_A          272 VKKLTGQ  278 (317)
T ss_dssp             HHHHHSS
T ss_pred             chhccCC
Confidence            6555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.62  E-value=2.8e-15  Score=142.66  Aligned_cols=179  Identities=18%  Similarity=0.232  Sum_probs=129.7

Q ss_pred             cccCceEEEccccccceecc-ccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            9 PNSLVNLNVSYCEKIEEIIG-HVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         9 ~~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      .++|++|++++|. ++.++. .+.        .+++|++|+++++ ++..+.. ..+..+++|++|++++| .++.+|..
T Consensus        51 ~~~L~~L~l~~n~-i~~~~~~~~~--------~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~  118 (353)
T 2z80_A           51 TEAVKSLDLSNNR-ITYISNSDLQ--------RCVNLQALVLTSN-GINTIEE-DSFSSLGSLEHLDLSYN-YLSNLSSS  118 (353)
T ss_dssp             CTTCCEEECTTSC-CCEECTTTTT--------TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSSCCHH
T ss_pred             cccCcEEECCCCc-CcccCHHHhc--------cCCCCCEEECCCC-ccCccCH-hhcCCCCCCCEEECCCC-cCCcCCHh
Confidence            4589999999986 555554 333        5899999999994 4444322 22678999999999996 56777765


Q ss_pred             -CcCccCccceeecCceeeecCcCchhhhhhhh--hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857           88 -IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE--EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT  164 (439)
Q Consensus        88 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~  164 (439)
                       ++.+++|++|+++++.+.          .++.  .+..+++|++|+++++..+..++... +  ..+++|++|+++++ 
T Consensus       119 ~~~~l~~L~~L~L~~n~l~----------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~--~~l~~L~~L~l~~n-  184 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGNPYK----------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-F--AGLTFLEELEIDAS-  184 (353)
T ss_dssp             HHTTCTTCSEEECTTCCCS----------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-T--TTCCEEEEEEEEET-
T ss_pred             HhCCCccCCEEECCCCCCc----------ccCchhhhccCCCCcEEECCCCccccccCHHH-c--cCCCCCCEEECCCC-
Confidence             788999999999995433          3333  35578999999999886677664433 2  36899999999987 


Q ss_pred             ccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857          165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                      .++...|.. +..+++|++|+++++. +..++...        .. .+++|+.|+++++.
T Consensus       185 ~l~~~~~~~-l~~l~~L~~L~l~~n~-l~~~~~~~--------~~-~~~~L~~L~L~~n~  233 (353)
T 2z80_A          185 DLQSYEPKS-LKSIQNVSHLILHMKQ-HILLLEIF--------VD-VTSSVECLELRDTD  233 (353)
T ss_dssp             TCCEECTTT-TTTCSEEEEEEEECSC-STTHHHHH--------HH-HTTTEEEEEEESCB
T ss_pred             CcCccCHHH-HhccccCCeecCCCCc-cccchhhh--------hh-hcccccEEECCCCc
Confidence            466544554 8889999999999874 44433210        01 13899999999873

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=1.7e-14  Score=134.48  Aligned_cols=229  Identities=16%  Similarity=0.178  Sum_probs=113.4

Q ss_pred             CCccEEeeccCCCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCC
Q 046857           68 PSLERVSMTRCPNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQA  146 (439)
Q Consensus        68 ~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~  146 (439)
                      ++|++|+++++ .++.+|.. +..+++|++|+++++.+...+.       .+..+..+++|++|+++++. +..++... 
T Consensus        28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~-   97 (306)
T 2z66_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC-------CSQSDFGTTSLKYLDLSFNG-VITMSSNF-   97 (306)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEE-------EEHHHHSCSCCCEEECCSCS-EEEEEEEE-
T ss_pred             CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccC-------cccccccccccCEEECCCCc-cccChhhc-
Confidence            45555555553 34444443 3455555555555533221110       11122235666666666443 33333221 


Q ss_pred             CCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccc
Q 046857          147 LPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKL  226 (439)
Q Consensus       147 l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  226 (439)
                         ..+++|++|+++++ .++...+...+..+++|++|+++++......+.         .+..+ ++|++|+++++.-.
T Consensus        98 ---~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l-~~L~~L~l~~n~l~  163 (306)
T 2z66_A           98 ---LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---------IFNGL-SSLEVLKMAGNSFQ  163 (306)
T ss_dssp             ---ETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---------TTTTC-TTCCEEECTTCEEG
T ss_pred             ---CCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchh---------hcccC-cCCCEEECCCCccc
Confidence               24566666666664 333322212355566666666665532111110         11112 66666666665322


Q ss_pred             c-ccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeec
Q 046857          227 K-RFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLS  305 (439)
Q Consensus       227 ~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  305 (439)
                      . .++...   ..+++|+.|+++++ .+...++.                                ....+++|+.|+++
T Consensus       164 ~~~~~~~~---~~l~~L~~L~Ls~n-~l~~~~~~--------------------------------~~~~l~~L~~L~L~  207 (306)
T 2z66_A          164 ENFLPDIF---TELRNLTFLDLSQC-QLEQLSPT--------------------------------AFNSLSSLQVLNMS  207 (306)
T ss_dssp             GGEECSCC---TTCTTCCEEECTTS-CCCEECTT--------------------------------TTTTCTTCCEEECT
T ss_pred             cccchhHH---hhCcCCCEEECCCC-CcCCcCHH--------------------------------HhcCCCCCCEEECC
Confidence            2 122222   25667777777664 33333222                                12345667777776


Q ss_pred             CCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCC-CcceEEEccCC
Q 046857          306 GLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLE-NLWGLQVSKCH  360 (439)
Q Consensus       306 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~c~  360 (439)
                      ++. ++.+....+.   .+++|++|+++++......+..+..++ +|++|++++++
T Consensus       208 ~N~-l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          208 HNN-FFSLDTFPYK---CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TSC-CSBCCSGGGT---TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCc-cCccChhhcc---CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            642 3333322222   567788888877754444555566664 78888887754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.59  E-value=8.3e-15  Score=136.50  Aligned_cols=237  Identities=17%  Similarity=0.147  Sum_probs=130.9

Q ss_pred             hhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc--cchhHHhhccccceeeecccc
Q 046857          113 TIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA--IPANLLRCLNNLARLEVRNCD  190 (439)
Q Consensus       113 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~l~~~~  190 (439)
                      .+..+|..+  .++|++|+++++. +..++.+. +  ..+++|++|+++++ .++..  .+.. +..+++|++|+++++.
T Consensus        18 ~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           18 GLTSVPTGI--PSSATRLELESNK-LQSLPHGV-F--DKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             CCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCS
T ss_pred             CcccCCCCC--CCCCCEEECCCCc-cCccCHhH-h--hccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCc
Confidence            344455433  3689999998665 55655432 1  36889999999886 34421  1343 5668999999999863


Q ss_pred             ccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCC
Q 046857          191 SLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKE  270 (439)
Q Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~  270 (439)
                       +..++.  .       +..+ ++|++|+++++. +..++... ....+++|+.|++.++. +....+..          
T Consensus        90 -i~~l~~--~-------~~~l-~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~----------  145 (306)
T 2z66_A           90 -VITMSS--N-------FLGL-EQLEHLDFQHSN-LKQMSEFS-VFLSLRNLIYLDISHTH-TRVAFNGI----------  145 (306)
T ss_dssp             -EEEEEE--E-------EETC-TTCCEEECTTSE-EESSTTTT-TTTTCTTCCEEECTTSC-CEECSTTT----------
T ss_pred             -cccChh--h-------cCCC-CCCCEEECCCCc-ccccccch-hhhhccCCCEEECCCCc-CCccchhh----------
Confidence             333322  1       1123 889999998863 44443211 22467889999988853 43332221          


Q ss_pred             CCccCcceeeeeccccccccccccccCccceEeecCCCCcee-ccccCCccccccCCcceEEeecCCCcccccCCCccCC
Q 046857          271 PQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQH-LWKENDESNKVFANLERLEISECSKLQKLVPPSWHLE  349 (439)
Q Consensus       271 L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~  349 (439)
                                            ...+++|+.|+++++. +.. .....+.   .+++|++|+++++..-...+..+..++
T Consensus       146 ----------------------~~~l~~L~~L~l~~n~-l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~  199 (306)
T 2z66_A          146 ----------------------FNGLSSLEVLKMAGNS-FQENFLPDIFT---ELRNLTFLDLSQCQLEQLSPTAFNSLS  199 (306)
T ss_dssp             ----------------------TTTCTTCCEEECTTCE-EGGGEECSCCT---TCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ----------------------cccCcCCCEEECCCCc-cccccchhHHh---hCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence                                  2234566666665542 221 1111122   556666666666532222244455666


Q ss_pred             CcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEec-cccEEecCCC
Q 046857          350 NLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFG-KLRYLELDCL  417 (439)
Q Consensus       350 ~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~-~L~~l~l~~c  417 (439)
                      +|++|+++++ .++.+ +...+..+++|+.|+++++ .+......       .+..++ +|++|+++++
T Consensus       200 ~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          200 SLQVLNMSHN-NFFSL-DTFPYKCLNSLQVLDYSLN-HIMTSKKQ-------ELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             TCCEEECTTS-CCSBC-CSGGGTTCTTCCEEECTTS-CCCBCSSS-------SCCCCCTTCCEEECTTC
T ss_pred             CCCEEECCCC-ccCcc-ChhhccCcccCCEeECCCC-CCcccCHH-------HHHhhhccCCEEEccCC
Confidence            6666666664 35554 2222445666666666666 33332211       344443 6666666664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.58  E-value=4.8e-17  Score=160.65  Aligned_cols=349  Identities=17%  Similarity=0.104  Sum_probs=203.6

Q ss_pred             CCccccCceEEEccccccce----eccccccccccccccccccceeeccccccccccccccCccCCC----CccEEeecc
Q 046857            6 VGIPNSLVNLNVSYCEKIEE----IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFP----SLERVSMTR   77 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----~L~~L~l~~   77 (439)
                      +..+++|++|++++|..-..    ++..+.        .+++|++|+++++ .+.+.........++    +|++|++++
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--------~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~   94 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALR--------VNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN   94 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHH--------TCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHH--------hCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccC
Confidence            45688999999999973322    222222        4689999999994 232211111112244    799999999


Q ss_pred             CCCcc-----ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhc-CCCCccEEEccCCCCceeecCCCCCC--c
Q 046857           78 CPNMK-----TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI-GFRDIQYLQLSHFPRLKEIWHGQALP--V  149 (439)
Q Consensus        78 c~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~l~--~  149 (439)
                      |. +.     .++..+..+++|++|+++++.+..     .....+...+. ..++|++|+++++. +....... ++  .
T Consensus        95 n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-----~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~-l~~~l  166 (461)
T 1z7x_W           95 CC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGD-----AGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP-LASVL  166 (461)
T ss_dssp             SC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHH-----HHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH-HHHHH
T ss_pred             CC-CCHHHHHHHHHHHccCCceeEEECCCCcCch-----HHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH-HHHHH
Confidence            85 44     467778899999999999965331     12233333322 35689999999775 33211000 11  0


Q ss_pred             CccCCccEEEeccccccccccchhHHh----hccccceeeeccccccchhccccccccccCcccccccccceEecCCccc
Q 046857          150 RFFNYLAELEVDYCTNMSSAIPANLLR----CLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPK  225 (439)
Q Consensus       150 ~~~~~L~~L~l~~~~~l~~~~~~~~~~----~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  225 (439)
                      ..+++|++|+++++. +++..+..+..    ..++|++|++++|. +.....    ......+... ++|++|+++++. 
T Consensus       167 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~----~~l~~~l~~~-~~L~~L~Ls~n~-  238 (461)
T 1z7x_W          167 RAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNC----RDLCGIVASK-ASLRELALGSNK-  238 (461)
T ss_dssp             HHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHH----HHHHHHHHHC-TTCCEEECCSSB-
T ss_pred             hhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHH----HHHHHHHHhC-CCccEEeccCCc-
Confidence            246899999999875 55433333222    24599999999884 332100    0000011123 899999999884 


Q ss_pred             ccccccC---CCcccCCCCccEEeEecCCCcceecc---ccccccccCCCCC--CccCcceeeeecccccccccc-cccc
Q 046857          226 LKRFCNF---TGNIIEMPMLWSLTIENCPDMETFIS---NSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDE-KVAF  296 (439)
Q Consensus       226 l~~~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~-~~~~  296 (439)
                      ++.....   ......+++|+.|++.+| .+.....   ......+++|++|  +.+.+.+..+     ...... ....
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-----~~l~~~l~~~~  312 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-----RLLCETLLEPG  312 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-----HHHHHHHTSTT
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-----HHHHHHhccCC
Confidence            3332100   001125789999999997 4544211   1123457888888  5555543110     000000 0122


Q ss_pred             CccceEeecCCCCceeccccCC-ccccccCCcceEEeecCCCcccc-cCCC----c-cCCCcceEEEccCCCccc----c
Q 046857          297 PQLRKLRLSGLHKVQHLWKEND-ESNKVFANLERLEISECSKLQKL-VPPS----W-HLENLWGLQVSKCHGLIN----V  365 (439)
Q Consensus       297 ~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~~l~~l-~~~~----~-~l~~L~~L~l~~c~~l~~----l  365 (439)
                      ++|+.|++++|. ++......+ .....+++|++|+++++. ++.. +..+    . ..++|++|++++| ++++    .
T Consensus       313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~  389 (461)
T 1z7x_W          313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS  389 (461)
T ss_dssp             CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred             ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHH
Confidence            699999999875 443211100 111156899999999984 4432 2211    1 2679999999997 4664    2


Q ss_pred             cChhHHhhccccceEEEcccccchh
Q 046857          366 LTLSASKNLVNLGRMKIVDCKMMEE  390 (439)
Q Consensus       366 ~p~~~~~~l~~L~~L~l~~c~~l~~  390 (439)
                      ++. .+..+++|+.|++++| .+..
T Consensus       390 l~~-~l~~~~~L~~L~l~~N-~i~~  412 (461)
T 1z7x_W          390 LAA-TLLANHSLRELDLSNN-CLGD  412 (461)
T ss_dssp             HHH-HHHHCCCCCEEECCSS-SCCH
T ss_pred             HHH-HHHhCCCccEEECCCC-CCCH
Confidence            244 3456899999999998 4443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=5.6e-14  Score=125.96  Aligned_cols=57  Identities=12%  Similarity=0.054  Sum_probs=30.0

Q ss_pred             CCcceEEeecCCCcccccCC-CccC-CCcceEEEccCCCcccccChhHHhhccccceEEEcccc
Q 046857          325 ANLERLEISECSKLQKLVPP-SWHL-ENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCK  386 (439)
Q Consensus       325 ~~L~~L~l~~c~~l~~l~~~-~~~l-~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~  386 (439)
                      ++|++|++++++.++.++.. +..+ ++|++|++++ ++++.+ |..   .+++|+.|++.++.
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l-~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTAL-PSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCC-CCT---TCTTCSEEECTTC-
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccC-Chh---HhccCceeeccCcc
Confidence            45556666555445555432 3345 6666666665 345554 332   45566666666553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.53  E-value=2.7e-13  Score=124.83  Aligned_cols=84  Identities=18%  Similarity=0.136  Sum_probs=43.2

Q ss_pred             cCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhcc
Q 046857          296 FPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLV  375 (439)
Q Consensus       296 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~  375 (439)
                      +++|+.|+++++ .++.+....+.   .+++|++|+++++......+..+..+++|++|+++++ +++.+ +...+..++
T Consensus       152 l~~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~  225 (285)
T 1ozn_A          152 LGNLTHLFLHGN-RISSVPERAFR---GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLR  225 (285)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCT
T ss_pred             CCCccEEECCCC-cccccCHHHhc---CccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcC-CHHHcccCc
Confidence            344555555443 23333322222   4556666666655432233455556666666666664 45554 434445566


Q ss_pred             ccceEEEccc
Q 046857          376 NLGRMKIVDC  385 (439)
Q Consensus       376 ~L~~L~l~~c  385 (439)
                      +|+.|+++++
T Consensus       226 ~L~~L~l~~N  235 (285)
T 1ozn_A          226 ALQYLRLNDN  235 (285)
T ss_dssp             TCCEEECCSS
T ss_pred             ccCEEeccCC
Confidence            6666666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.53  E-value=4.9e-15  Score=139.92  Aligned_cols=87  Identities=20%  Similarity=0.153  Sum_probs=42.0

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccc-ccCCCccCCCcceEEEccCCCcccccChhHHhh
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQK-LVPPSWHLENLWGLQVSKCHGLINVLTLSASKN  373 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~  373 (439)
                      .+++|+.|++++|..++......+.   .+++|++|++++|..+.. ....+..+++|++|++++|  +.+    ..+..
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~----~~~~~  290 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCFQEFF---QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD----GTLQL  290 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGG---GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT----TCHHH
T ss_pred             hCCCCCEEeCCCCCcCCHHHHHHHh---CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCH----HHHHH
Confidence            3445555555555433322222122   456666666666653321 1123456777777777776  322    11222


Q ss_pred             c-cccceEEEcccccchhh
Q 046857          374 L-VNLGRMKIVDCKMMEEI  391 (439)
Q Consensus       374 l-~~L~~L~l~~c~~l~~~  391 (439)
                      + .++..|++.++ .++..
T Consensus       291 l~~~l~~L~l~~n-~l~~~  308 (336)
T 2ast_B          291 LKEALPHLQINCS-HFTTI  308 (336)
T ss_dssp             HHHHSTTSEESCC-CSCCT
T ss_pred             HHhhCcceEEecc-cCccc
Confidence            2 23555566544 55444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.53  E-value=1.4e-13  Score=130.78  Aligned_cols=224  Identities=12%  Similarity=0.049  Sum_probs=112.1

Q ss_pred             CCCccEEeeccCCCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhh-hhcCCCCccEEEccCCCCceeecCC
Q 046857           67 FPSLERVSMTRCPNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE-EMIGFRDIQYLQLSHFPRLKEIWHG  144 (439)
Q Consensus        67 l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~i~~~  144 (439)
                      .+++++|+++++ +++.+|.+ +..+++|++|++++|.+.         +.++. .+.+++++.++.+.++..+..++.+
T Consensus        29 ~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~---------~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           29 PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVL---------EVIEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTC---------CEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCC---------CccChhHhhcchhhhhhhcccCCcccccCch
Confidence            356777777774 56666653 566677777777663321         11111 1224555555444444445554433


Q ss_pred             CCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857          145 QALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       145 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                      . +  ..+++|+.|++.++ .++.. +...+....++..+++.+++.+..++.-.        .......++.|+++++ 
T Consensus        99 ~-f--~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~l~~l~l~~~~~i~~l~~~~--------f~~~~~~l~~L~L~~N-  164 (350)
T 4ay9_X           99 A-F--QNLPNLQYLLISNT-GIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNS--------FVGLSFESVILWLNKN-  164 (350)
T ss_dssp             S-B--CCCTTCCEEEEEEE-CCSSC-CCCTTCCBSSCEEEEEESCTTCCEECTTS--------STTSBSSCEEEECCSS-
T ss_pred             h-h--hhcccccccccccc-ccccC-Cchhhcccchhhhhhhccccccccccccc--------hhhcchhhhhhccccc-
Confidence            2 1  24566666666554 33332 22223334455555555554444432200        0001134555555554 


Q ss_pred             cccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEee
Q 046857          225 KLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRL  304 (439)
Q Consensus       225 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  304 (439)
                      .++.++....   ..++|+.+.+.+++.+..++..                                ....+++|+.|++
T Consensus       165 ~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~~~--------------------------------~f~~l~~L~~LdL  209 (350)
T 4ay9_X          165 GIQEIHNSAF---NGTQLDELNLSDNNNLEELPND--------------------------------VFHGASGPVILDI  209 (350)
T ss_dssp             CCCEECTTSS---TTEEEEEEECTTCTTCCCCCTT--------------------------------TTTTEECCSEEEC
T ss_pred             cccCCChhhc---cccchhHHhhccCCcccCCCHH--------------------------------HhccCcccchhhc
Confidence            3444433332   3345555555554444444322                                1234556777777


Q ss_pred             cCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEc
Q 046857          305 SGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVS  357 (439)
Q Consensus       305 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~  357 (439)
                      +++ .++.++..      .+.+|+.|.+.++..++.+|. +..+++|+.+++.
T Consensus       210 s~N-~l~~lp~~------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          210 SRT-RIHSLPSY------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             TTS-CCCCCCSS------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred             CCC-CcCccChh------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence            664 45555544      455666666666666666663 5566677766664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=2.2e-13  Score=135.14  Aligned_cols=83  Identities=18%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhc
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL  374 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l  374 (439)
                      .+++|+.|+++++. ++.++..  .   .+++|++|+++++ .++.+|+.+..+++|+.|+++++ .++.+ |.. +..+
T Consensus       167 ~l~~L~~L~Ls~N~-l~~~~~~--~---~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~-l~~l  236 (487)
T 3oja_A          167 SSDTLEHLNLQYNF-IYDVKGQ--V---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKA-LRFS  236 (487)
T ss_dssp             GTTTCCEEECTTSC-CCEEECC--C---CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEE-CTT-CCCC
T ss_pred             hCCcccEEecCCCc-ccccccc--c---cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCccc-chh-hccC
Confidence            46788889888864 5544221  1   5788999999887 46667777778889999999884 57775 553 4567


Q ss_pred             cccceEEEccccc
Q 046857          375 VNLGRMKIVDCKM  387 (439)
Q Consensus       375 ~~L~~L~l~~c~~  387 (439)
                      ++|+.|++++++-
T Consensus       237 ~~L~~L~l~~N~l  249 (487)
T 3oja_A          237 QNLEHFDLRGNGF  249 (487)
T ss_dssp             TTCCEEECTTCCB
T ss_pred             CCCCEEEcCCCCC
Confidence            8889999888743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.51  E-value=1e-13  Score=137.54  Aligned_cols=216  Identities=12%  Similarity=0.017  Sum_probs=133.2

Q ss_pred             cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      .+++|++|+++++ .+..++. ..+..+++|++|++++|. +...+. ++.+++|++|++++|.+...          + 
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l----------~-   96 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQEL----------L-   96 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEEEEE----------E-
T ss_pred             cCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcCCCC----------C-
Confidence            4567888888883 3333321 235678888888888864 443333 77788888888888554421          1 


Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                         ..++|+.|+++++. +..++.      ..+++|+.|+++++ .++...|.. +..+++|++|+++++. +....+. 
T Consensus        97 ---~~~~L~~L~L~~N~-l~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~-  162 (487)
T 3oja_A           97 ---VGPSIETLHAANNN-ISRVSC------SRGQGKKNIYLANN-KITMLRDLD-EGCRSRVQYLDLKLNE-IDTVNFA-  162 (487)
T ss_dssp             ---ECTTCCEEECCSSC-CCCEEE------CCCSSCEEEECCSS-CCCSGGGBC-GGGGSSEEEEECTTSC-CCEEEGG-
T ss_pred             ---CCCCcCEEECcCCc-CCCCCc------cccCCCCEEECCCC-CCCCCCchh-hcCCCCCCEEECCCCC-CCCcChH-
Confidence               23678888888665 443332      24677888888776 455543433 6678888888888763 3322110 


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcc
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLE  277 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~  277 (439)
                      .+.      ..+ ++|+.|+++++. +..++..    ..+++|+.|+++++ .+..+++.  ...+++|+.|  +.+.+.
T Consensus       163 ~l~------~~l-~~L~~L~Ls~N~-l~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          163 ELA------ASS-DTLEHLNLQYNF-IYDVKGQ----VVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             GGG------GGT-TTCCEEECTTSC-CCEEECC----CCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCC
T ss_pred             HHh------hhC-CcccEEecCCCc-ccccccc----ccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCcCc
Confidence            000      013 788888888874 4444221    25788888888884 56666544  4567777777  566666


Q ss_pred             eeeeeccccccccccccccCccceEeecCCCC
Q 046857          278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHK  309 (439)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  309 (439)
                      +++.          ....+++|+.|++++++-
T Consensus       228 ~lp~----------~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          228 LIEK----------ALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             EECT----------TCCCCTTCCEEECTTCCB
T ss_pred             ccch----------hhccCCCCCEEEcCCCCC
Confidence            5432          244567888888887653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.50  E-value=2.1e-13  Score=125.58  Aligned_cols=197  Identities=13%  Similarity=0.109  Sum_probs=84.6

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhh-hh
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKC-YE  119 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~  119 (439)
                      ++|++|++++ .++..++. ..+..+++|++|+++++ .+..+ |..+..+++|++|+++++.         .+..+ +.
T Consensus        32 ~~l~~L~l~~-n~i~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~---------~l~~~~~~   99 (285)
T 1ozn_A           32 AASQRIFLHG-NRISHVPA-ASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA---------QLRSVDPA   99 (285)
T ss_dssp             TTCSEEECTT-SCCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT---------TCCCCCTT
T ss_pred             CCceEEEeeC-CcCCccCH-HHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC---------CccccCHH
Confidence            4555555555 22222211 11344555666666554 33333 4445555566666655522         11111 22


Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                      .+..+++|++|+++++. +..+....   ...+++|++|+++++ .++. ++...+..+++|++|+++++ .+..++.  
T Consensus       100 ~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~--  170 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCG-LQELGPGL---FRGLAALQYLYLQDN-ALQA-LPDDTFRDLGNLTHLFLHGN-RISSVPE--  170 (285)
T ss_dssp             TTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CCCEECT--
T ss_pred             HhcCCcCCCEEECCCCc-CCEECHhH---hhCCcCCCEEECCCC-cccc-cCHhHhccCCCccEEECCCC-cccccCH--
Confidence            23345556666665443 22221111   123555666666554 2333 23233455556666666554 2222211  


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP  271 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  271 (439)
                            ..+..+ ++|+.|+++++.-....+...   ..+++|+.|++.++ .+..+++. ....+++|+.|
T Consensus       171 ------~~~~~l-~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L  230 (285)
T 1ozn_A          171 ------RAFRGL-HSLDRLLLHQNRVAHVHPHAF---RDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYL  230 (285)
T ss_dssp             ------TTTTTC-TTCCEEECCSSCCCEECTTTT---TTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEE
T ss_pred             ------HHhcCc-cccCEEECCCCcccccCHhHc---cCcccccEeeCCCC-cCCcCCHH-HcccCcccCEE
Confidence                  001112 556666665553211112222   24556666666553 33333221 12345555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.50  E-value=2e-14  Score=135.76  Aligned_cols=111  Identities=12%  Similarity=0.177  Sum_probs=48.7

Q ss_pred             cCCCCccEEeeccCCCcc-c-cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee--
Q 046857           65 LEFPSLERVSMTRCPNMK-T-FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE--  140 (439)
Q Consensus        65 ~~l~~L~~L~l~~c~~l~-~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--  140 (439)
                      ..+++|++|++++|. +. . ++..+..+++|++|++++|.+         ....+..+..+++|++|++++|..+..  
T Consensus        90 ~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l---------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~  159 (336)
T 2ast_B           90 FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRL---------SDPIVNTLAKNSNLVRLNLSGCSGFSEFA  159 (336)
T ss_dssp             CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBC---------CHHHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred             ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCccc---------CHHHHHHHhcCCCCCEEECCCCCCCCHHH
Confidence            345555555555543 22 1 444445555555555555221         112333334455555555555433331  


Q ss_pred             ecCCCCCCcCccCCccEEEeccccccccccchhHHhhcc-ccceeeeccc
Q 046857          141 IWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLN-NLARLEVRNC  189 (439)
Q Consensus       141 i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~~  189 (439)
                      ++...    ..+++|++|++++|..+++......+..++ +|++|++++|
T Consensus       160 l~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          160 LQTLL----SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             HHHHH----HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             HHHHH----hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            11100    234555555555553343321112244455 5555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.49  E-value=2e-13  Score=122.40  Aligned_cols=204  Identities=13%  Similarity=0.085  Sum_probs=124.9

Q ss_pred             CCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccC
Q 046857          153 NYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNF  232 (439)
Q Consensus       153 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  232 (439)
                      ++|++|+++++ +++.. +...+..+++|++|+++++..++.++..        .+..+ ++|++|++++|..++.++..
T Consensus        31 ~~l~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~--------~f~~l-~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESH--------SFYNL-SKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             TTCCEEEEESC-CCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTT--------TEESC-TTCCEEEEEEETTCCEECTT
T ss_pred             CcccEEEEeCC-cceEE-CHHHccCCCCCcEEeCCCCCCcceeCHh--------HcCCC-cCCcEEECCCCCCeeEcCHH
Confidence            35666666554 34432 3333555666666666655334333210        00112 56666666654455544322


Q ss_pred             CCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccc---eEeecCCCC
Q 046857          233 TGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLR---KLRLSGLHK  309 (439)
Q Consensus       233 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~  309 (439)
                      .  ...+++|+.|++.++. +..++.                                  ...+++|+   .|++++++.
T Consensus       100 ~--f~~l~~L~~L~l~~n~-l~~lp~----------------------------------~~~l~~L~~L~~L~l~~N~~  142 (239)
T 2xwt_C          100 A--LKELPLLKFLGIFNTG-LKMFPD----------------------------------LTKVYSTDIFFILEITDNPY  142 (239)
T ss_dssp             S--EECCTTCCEEEEEEEC-CCSCCC----------------------------------CTTCCBCCSEEEEEEESCTT
T ss_pred             H--hCCCCCCCEEeCCCCC-Cccccc----------------------------------cccccccccccEEECCCCcc
Confidence            2  1356777777777642 332211                                  12333444   888887656


Q ss_pred             ceeccccCCccccccCCcc-eEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhc-cccceEEEccccc
Q 046857          310 VQHLWKENDESNKVFANLE-RLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL-VNLGRMKIVDCKM  387 (439)
Q Consensus       310 l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l-~~L~~L~l~~c~~  387 (439)
                      ++.++...+.   .+++|+ +|+++++ .++.+|......++|++|++++++.++.+ +...+..+ ++|+.|+++++ .
T Consensus       143 l~~i~~~~~~---~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N-~  216 (239)
T 2xwt_C          143 MTSIPVNAFQ---GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQT-S  216 (239)
T ss_dssp             CCEECTTTTT---TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTTC-C
T ss_pred             hhhcCccccc---chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccC-CHHHhhccccCCcEEECCCC-c
Confidence            7777655444   688999 9999886 46678877666689999999997668887 54456678 99999999997 6


Q ss_pred             chhhccccccccCCCceEeccccEEecCCCCCc
Q 046857          388 MEEIIQSQVGEETEDCIVFGKLRYLELDCLPSL  420 (439)
Q Consensus       388 l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l  420 (439)
                      ++.++.          ..+++|+.|+++++..|
T Consensus       217 l~~l~~----------~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          217 VTALPS----------KGLEHLKELIARNTWTL  239 (239)
T ss_dssp             CCCCCC----------TTCTTCSEEECTTC---
T ss_pred             cccCCh----------hHhccCceeeccCccCC
Confidence            666643          25789999999988654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.47  E-value=4.8e-13  Score=126.99  Aligned_cols=243  Identities=15%  Similarity=0.128  Sum_probs=151.4

Q ss_pred             cEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCc
Q 046857           71 ERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPV  149 (439)
Q Consensus        71 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~  149 (439)
                      +.++-++ .+++.+|.++  .+++++|++++          +.++.++.. +.++++|++|+++++...+.++.+.   .
T Consensus        12 ~~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~----------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f   75 (350)
T 4ay9_X           12 RVFLCQE-SKVTEIPSDL--PRNAIELRFVL----------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---F   75 (350)
T ss_dssp             TEEEEES-TTCCSCCTTC--CTTCSEEEEES----------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS---B
T ss_pred             CEEEecC-CCCCccCcCc--CCCCCEEEccC----------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH---h
Confidence            4555555 4677888765  35788888887          334444443 4567788888888766555554432   1


Q ss_pred             CccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccccc
Q 046857          150 RFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRF  229 (439)
Q Consensus       150 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  229 (439)
                      ..++++.++.+.++.+++.+ +...+..+++|++|+++++ .+..++......        . .++..|++.++..+..+
T Consensus        76 ~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~--------~-~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           76 SNLPKLHEIRIEKANNLLYI-NPEAFQNLPNLQYLLISNT-GIKHLPDVHKIH--------S-LQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             CSCTTCCEEEEEEETTCCEE-CTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCC--------B-SSCEEEEEESCTTCCEE
T ss_pred             hcchhhhhhhcccCCccccc-Cchhhhhcccccccccccc-ccccCCchhhcc--------c-chhhhhhhccccccccc
Confidence            24566666555555566654 3334677777888887765 333333211111        1 44555666555555554


Q ss_pred             ccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCC
Q 046857          230 CNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHK  309 (439)
Q Consensus       230 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  309 (439)
                      +.... ......++.|++.++ .++.++..                                 ....++|+.+.+.++..
T Consensus       145 ~~~~f-~~~~~~l~~L~L~~N-~i~~i~~~---------------------------------~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          145 ERNSF-VGLSFESVILWLNKN-GIQEIHNS---------------------------------AFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             CTTSS-TTSBSSCEEEECCSS-CCCEECTT---------------------------------SSTTEEEEEEECTTCTT
T ss_pred             cccch-hhcchhhhhhccccc-cccCCChh---------------------------------hccccchhHHhhccCCc
Confidence            43321 111234555555552 34333221                                 22345889999988888


Q ss_pred             ceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcc
Q 046857          310 VQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVD  384 (439)
Q Consensus       310 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~  384 (439)
                      ++.++.+.+.   .+++|+.|+++++ .++.+|..  .+.+|+.|.+.+++.++.+ |.  ...+++|+.+++.+
T Consensus       190 l~~i~~~~f~---~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~l-P~--l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          190 LEELPNDVFH---GASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKL-PT--LEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCCTTTTT---TEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCC-CC--TTTCCSCCEEECSC
T ss_pred             ccCCCHHHhc---cCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcC-CC--chhCcChhhCcCCC
Confidence            8888766555   7889999999887 68888764  4788899998888889887 54  46788999998854

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.46  E-value=5.3e-13  Score=123.17  Aligned_cols=202  Identities=18%  Similarity=0.165  Sum_probs=143.3

Q ss_pred             CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF   84 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l   84 (439)
                      +++++++++++++.++. ++.+|..+          .++++.|++++. .+..+.. ..+..+++|++|+++++ .++.+
T Consensus         5 ~~~~l~~l~~l~~~~~~-l~~ip~~~----------~~~l~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~   70 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRN-LTALPPDL----------PKDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRA-ELTKL   70 (290)
T ss_dssp             EEECSTTCCEEECTTSC-CSSCCSCC----------CTTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTS-CCCEE
T ss_pred             cccccCCccEEECCCCC-CCcCCCCC----------CCCCCEEEcCCC-cCCccCH-HHhhcCCCCCEEECCCC-ccCcc
Confidence            45678889999998864 66676542          468999999983 3333322 23677999999999996 57777


Q ss_pred             ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857           85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT  164 (439)
Q Consensus        85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~  164 (439)
                      +.. +.+++|++|+++++.          +..+|..+..+++|+.|+++++. +..++.+.   ...+++|+.|+++++ 
T Consensus        71 ~~~-~~l~~L~~L~Ls~N~----------l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~---~~~l~~L~~L~L~~N-  134 (290)
T 1p9a_G           71 QVD-GTLPVLGTLDLSHNQ----------LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGA---LRGLGELQELYLKGN-  134 (290)
T ss_dssp             ECC-SCCTTCCEEECCSSC----------CSSCCCCTTTCTTCCEEECCSSC-CCCCCSST---TTTCTTCCEEECTTS-
T ss_pred             cCC-CCCCcCCEEECCCCc----------CCcCchhhccCCCCCEEECCCCc-CcccCHHH---HcCCCCCCEEECCCC-
Confidence            665 789999999999844          33455556678899999999664 65554332   136889999999886 


Q ss_pred             ccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccE
Q 046857          165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWS  244 (439)
Q Consensus       165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~  244 (439)
                      .++. ++...+..+++|++|+++++ .+..++. +       .+..+ ++|+.|+++++ .++.++....   ..++|+.
T Consensus       135 ~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~-------~~~~l-~~L~~L~L~~N-~l~~ip~~~~---~~~~L~~  199 (290)
T 1p9a_G          135 ELKT-LPPGLLTPTPKLEKLSLANN-NLTELPA-G-------LLNGL-ENLDTLLLQEN-SLYTIPKGFF---GSHLLPF  199 (290)
T ss_dssp             CCCC-CCTTTTTTCTTCCEEECTTS-CCSCCCT-T-------TTTTC-TTCCEEECCSS-CCCCCCTTTT---TTCCCSE
T ss_pred             CCCc-cChhhcccccCCCEEECCCC-cCCccCH-H-------HhcCc-CCCCEEECCCC-cCCccChhhc---ccccCCe
Confidence            5665 45565788899999999976 4544432 1       11123 88999999887 4666665554   6678899


Q ss_pred             EeEecCC
Q 046857          245 LTIENCP  251 (439)
Q Consensus       245 L~l~~c~  251 (439)
                      +++.+.+
T Consensus       200 l~L~~Np  206 (290)
T 1p9a_G          200 AFLHGNP  206 (290)
T ss_dssp             EECCSCC
T ss_pred             EEeCCCC
Confidence            9888753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.45  E-value=3.6e-14  Score=132.60  Aligned_cols=89  Identities=12%  Similarity=0.095  Sum_probs=44.5

Q ss_pred             CCCCccEEeeccCCCccccccCC--cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857           66 EFPSLERVSMTRCPNMKTFSQGI--VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH  143 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~  143 (439)
                      .+++|++|++++|..-..+|..+  ..+++|++|+++++.+....   ..+..++..  ..++|++|+++++. +..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~~--~~~~L~~L~L~~N~-l~~~~~  166 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD---AWLAELQQW--LKPGLKVLSIAQAH-SLNFSC  166 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS---SHHHHHHTT--CCTTCCEEEEESCS-CCCCCT
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh---HHHHHHHHh--hcCCCcEEEeeCCC-CccchH
Confidence            46777777777764333566554  66777777777764433221   111111110  12566666666443 333221


Q ss_pred             CCCCCcCccCCccEEEeccc
Q 046857          144 GQALPVRFFNYLAELEVDYC  163 (439)
Q Consensus       144 ~~~l~~~~~~~L~~L~l~~~  163 (439)
                      ..   ...+++|++|+++++
T Consensus       167 ~~---~~~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          167 EQ---VRVFPALSTLDLSDN  183 (312)
T ss_dssp             TT---CCCCSSCCEEECCSC
T ss_pred             HH---hccCCCCCEEECCCC
Confidence            11   124556666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.43  E-value=8.4e-13  Score=122.97  Aligned_cols=189  Identities=16%  Similarity=0.205  Sum_probs=97.9

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      .+++|++|++.+|. +..++ .+.        .+++|++|+++++ .+.++   +.+..+++|++|++++| .++.++ .
T Consensus        39 ~l~~L~~L~l~~~~-i~~l~-~~~--------~l~~L~~L~L~~n-~i~~~---~~~~~l~~L~~L~L~~n-~l~~~~-~  102 (308)
T 1h6u_A           39 DLDGITTLSAFGTG-VTTIE-GVQ--------YLNNLIGLELKDN-QITDL---APLKNLTKITELELSGN-PLKNVS-A  102 (308)
T ss_dssp             HHHTCCEEECTTSC-CCCCT-TGG--------GCTTCCEEECCSS-CCCCC---GGGTTCCSCCEEECCSC-CCSCCG-G
T ss_pred             HcCCcCEEEeeCCC-ccCch-hhh--------ccCCCCEEEccCC-cCCCC---hhHccCCCCCEEEccCC-cCCCch-h
Confidence            45666666666663 33333 122        3566666666663 23332   22556666666666665 355444 3


Q ss_pred             CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857           88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS  167 (439)
Q Consensus        88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~  167 (439)
                      +..+++|++|++++|.+..          ++ .+..+++|++|+++++. +..++.     ...+++|+.|+++++ .++
T Consensus       103 ~~~l~~L~~L~l~~n~l~~----------~~-~l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~~n-~l~  164 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITD----------VT-PLAGLSNLQVLYLDLNQ-ITNISP-----LAGLTNLQYLSIGNA-QVS  164 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCC----------CG-GGTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCCEEECCSS-CCC
T ss_pred             hcCCCCCCEEECCCCCCCC----------ch-hhcCCCCCCEEECCCCc-cCcCcc-----ccCCCCccEEEccCC-cCC
Confidence            5566666666666643321          11 13446666666666543 333221     124566666666665 344


Q ss_pred             cccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeE
Q 046857          168 SAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTI  247 (439)
Q Consensus       168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l  247 (439)
                      +. +.  +..+++|++|+++++ .+..++.+.          .+ ++|+.|+++++. +..++.    ...+++|+.|++
T Consensus       165 ~~-~~--l~~l~~L~~L~l~~n-~l~~~~~l~----------~l-~~L~~L~L~~N~-l~~~~~----l~~l~~L~~L~l  224 (308)
T 1h6u_A          165 DL-TP--LANLSKLTTLKADDN-KISDISPLA----------SL-PNLIEVHLKNNQ-ISDVSP----LANTSNLFIVTL  224 (308)
T ss_dssp             CC-GG--GTTCTTCCEEECCSS-CCCCCGGGG----------GC-TTCCEEECTTSC-CCBCGG----GTTCTTCCEEEE
T ss_pred             CC-hh--hcCCCCCCEEECCCC-ccCcChhhc----------CC-CCCCEEEccCCc-cCcccc----ccCCCCCCEEEc
Confidence            32 22  555666666666654 333332211          12 666666666652 333321    235566666666


Q ss_pred             ecC
Q 046857          248 ENC  250 (439)
Q Consensus       248 ~~c  250 (439)
                      .++
T Consensus       225 ~~N  227 (308)
T 1h6u_A          225 TNQ  227 (308)
T ss_dssp             EEE
T ss_pred             cCC
Confidence            664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.40  E-value=6.1e-13  Score=124.18  Aligned_cols=203  Identities=18%  Similarity=0.104  Sum_probs=108.5

Q ss_pred             ccccceeecccccccc-ccccccCccCCCCccEEeeccCCCccccccCCcCc-----cCccceeecCceeeecCcCchhh
Q 046857           41 FSNLKVLILDYLPRLT-SFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVST-----PKLHEVQEEGELCRWEGNLNSTI  114 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~  114 (439)
                      +++|++|+++++ ++. ..+..-.+..+++|++|+++++ .+..+|..++.+     ++|++|++++|.+.         
T Consensus        94 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~---------  162 (312)
T 1wwl_A           94 ISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSL---------  162 (312)
T ss_dssp             TSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCC---------
T ss_pred             cCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCc---------
Confidence            567777777773 222 1111100156777777777775 455445555555     77777777774322         


Q ss_pred             hhhh-hhhcCCCCccEEEccCCCCceee--cCCCCCCcCccCCccEEEecccccccc--ccchhHHhhccccceeeeccc
Q 046857          115 QKCY-EEMIGFRDIQYLQLSHFPRLKEI--WHGQALPVRFFNYLAELEVDYCTNMSS--AIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       115 ~~l~-~~~~~~~~L~~L~l~~~~~l~~i--~~~~~l~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~  189 (439)
                       .++ ..+..+++|++|+++++.....+  +..  +....+++|++|+++++ .++.  .++...+..+++|++|+++++
T Consensus       163 -~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          163 -NFSCEQVRVFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             -CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred             -cchHHHhccCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC
Confidence             222 34456777777777766533221  100  11135677777777776 3442  123334456677777777765


Q ss_pred             cccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCC
Q 046857          190 DSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNK  269 (439)
Q Consensus       190 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~  269 (439)
                      . +....+....       ..+ ++|++|+++++ .++.++...    . ++|+.|+++++ .++..+.   ...+++|+
T Consensus       239 ~-l~~~~~~~~~-------~~l-~~L~~L~Ls~N-~l~~ip~~~----~-~~L~~L~Ls~N-~l~~~p~---~~~l~~L~  299 (312)
T 1wwl_A          239 S-LRDAAGAPSC-------DWP-SQLNSLNLSFT-GLKQVPKGL----P-AKLSVLDLSYN-RLDRNPS---PDELPQVG  299 (312)
T ss_dssp             C-CCSSCCCSCC-------CCC-TTCCEEECTTS-CCSSCCSSC----C-SEEEEEECCSS-CCCSCCC---TTTSCEEE
T ss_pred             c-CCcccchhhh-------hhc-CCCCEEECCCC-ccChhhhhc----c-CCceEEECCCC-CCCCChh---HhhCCCCC
Confidence            3 3332211111       112 67777777776 344554333    1 67777777774 4555422   34566666


Q ss_pred             CC--CccCcc
Q 046857          270 EP--QKLTLE  277 (439)
Q Consensus       270 ~L--~~~~l~  277 (439)
                      .|  +.+.+.
T Consensus       300 ~L~L~~N~l~  309 (312)
T 1wwl_A          300 NLSLKGNPFL  309 (312)
T ss_dssp             EEECTTCTTT
T ss_pred             EEeccCCCCC
Confidence            66  444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=2.6e-12  Score=119.67  Aligned_cols=174  Identities=17%  Similarity=0.265  Sum_probs=130.3

Q ss_pred             CCCCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCc
Q 046857            2 ALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNM   81 (439)
Q Consensus         2 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l   81 (439)
                      +++.+..+++|++|++++|. +..++. +.        .+++|++|+++++ ++..+   +.+..+++|++|++++| .+
T Consensus        55 ~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~--------~l~~L~~L~L~~n-~l~~~---~~~~~l~~L~~L~l~~n-~l  119 (308)
T 1h6u_A           55 TIEGVQYLNNLIGLELKDNQ-ITDLAP-LK--------NLTKITELELSGN-PLKNV---SAIAGLQSIKTLDLTST-QI  119 (308)
T ss_dssp             CCTTGGGCTTCCEEECCSSC-CCCCGG-GT--------TCCSCCEEECCSC-CCSCC---GGGTTCTTCCEEECTTS-CC
T ss_pred             CchhhhccCCCCEEEccCCc-CCCChh-Hc--------cCCCCCEEEccCC-cCCCc---hhhcCCCCCCEEECCCC-CC
Confidence            45678899999999999995 555554 33        5899999999994 34444   45778999999999997 56


Q ss_pred             cccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEec
Q 046857           82 KTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVD  161 (439)
Q Consensus        82 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~  161 (439)
                      +.++. +..+++|++|++++|.+...          +. +..+++|+.|+++++. +..++.     ...+++|+.|+++
T Consensus       120 ~~~~~-l~~l~~L~~L~l~~n~l~~~----------~~-l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~  181 (308)
T 1h6u_A          120 TDVTP-LAGLSNLQVLYLDLNQITNI----------SP-LAGLTNLQYLSIGNAQ-VSDLTP-----LANLSKLTTLKAD  181 (308)
T ss_dssp             CCCGG-GTTCTTCCEEECCSSCCCCC----------GG-GGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECC
T ss_pred             CCchh-hcCCCCCCEEECCCCccCcC----------cc-ccCCCCccEEEccCCc-CCCChh-----hcCCCCCCEEECC
Confidence            66765 78899999999999654322          11 4468999999999774 554432     2468999999999


Q ss_pred             cccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857          162 YCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       162 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                      ++ .+++. +.  +..+++|++|++++| .+..++.+.          .+ ++|+.|+++++.
T Consensus       182 ~n-~l~~~-~~--l~~l~~L~~L~L~~N-~l~~~~~l~----------~l-~~L~~L~l~~N~  228 (308)
T 1h6u_A          182 DN-KISDI-SP--LASLPNLIEVHLKNN-QISDVSPLA----------NT-SNLFIVTLTNQT  228 (308)
T ss_dssp             SS-CCCCC-GG--GGGCTTCCEEECTTS-CCCBCGGGT----------TC-TTCCEEEEEEEE
T ss_pred             CC-ccCcC-hh--hcCCCCCCEEEccCC-ccCcccccc----------CC-CCCCEEEccCCe
Confidence            87 56653 33  778999999999987 444443321          23 899999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.37  E-value=6.8e-12  Score=114.85  Aligned_cols=198  Identities=15%  Similarity=0.131  Sum_probs=91.7

Q ss_pred             ccCceEEEccccccceecc-ccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cC
Q 046857           10 NSLVNLNVSYCEKIEEIIG-HVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QG   87 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~   87 (439)
                      ++|++|++++|. +..++. .+.        .+++|++|+++++ .+..++. ..+..+++|++|+++++. +..++ ..
T Consensus        28 ~~l~~L~ls~n~-l~~~~~~~~~--------~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~   95 (276)
T 2z62_A           28 FSTKNLDLSFNP-LRHLGSYSFF--------SFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNP-IQSLALGA   95 (276)
T ss_dssp             TTCCEEECTTCC-CCEECTTTTT--------TCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCC-CCEECTTT
T ss_pred             CCccEEECCCCc-ccccCHhHhc--------cccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCCc-cCccChhh
Confidence            346666666664 333332 222        3566666666663 2332221 124456666666666643 33333 44


Q ss_pred             CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee--ecCCCCCCcCccCCccEEEeccccc
Q 046857           88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE--IWHGQALPVRFFNYLAELEVDYCTN  165 (439)
Q Consensus        88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--i~~~~~l~~~~~~~L~~L~l~~~~~  165 (439)
                      +..+++|++|+++++.+......         .+..+++|++|+++++. +..  ++...    ..+++|++|+++++ .
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~l~~~~----~~l~~L~~L~Ls~N-~  160 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENF---------PIGHLKTLKELNVAHNL-IQSFKLPEYF----SNLTNLEHLDLSSN-K  160 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTC---------CCTTCTTCCEEECCSSC-CCCCCCCGGG----GGCTTCCEEECCSS-C
T ss_pred             hcCCccccEEECCCCCccccCch---------hcccCCCCCEEECcCCc-cceecCchhh----ccCCCCCEEECCCC-C
Confidence            55666666666665432221110         13345666666666443 222  11111    24566666666664 3


Q ss_pred             cccccchhHHhhccccc----eeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCC
Q 046857          166 MSSAIPANLLRCLNNLA----RLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPM  241 (439)
Q Consensus       166 l~~~~~~~~~~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  241 (439)
                      ++.. +...+..+++|+    +|+++++ .+..++.         ..... .+|+.|+++++. ++.++...  ...+++
T Consensus       161 l~~~-~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~---------~~~~~-~~L~~L~L~~n~-l~~~~~~~--~~~l~~  225 (276)
T 2z62_A          161 IQSI-YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP---------GAFKE-IRLKELALDTNQ-LKSVPDGI--FDRLTS  225 (276)
T ss_dssp             CCEE-CGGGGHHHHTCTTCCEEEECCSS-CCCEECT---------TSSCS-CCEEEEECCSSC-CSCCCTTT--TTTCCS
T ss_pred             CCcC-CHHHhhhhhhccccceeeecCCC-cccccCc---------cccCC-CcccEEECCCCc-eeecCHhH--hccccc
Confidence            4432 222244444444    5555543 2222211         00011 356666666653 44443322  124566


Q ss_pred             ccEEeEec
Q 046857          242 LWSLTIEN  249 (439)
Q Consensus       242 L~~L~l~~  249 (439)
                      |+.+++.+
T Consensus       226 L~~L~l~~  233 (276)
T 2z62_A          226 LQKIWLHT  233 (276)
T ss_dssp             CCEEECCS
T ss_pred             ccEEEccC
Confidence            66666665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.37  E-value=8.3e-12  Score=115.13  Aligned_cols=198  Identities=16%  Similarity=0.089  Sum_probs=137.5

Q ss_pred             CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccc
Q 046857          123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELN  202 (439)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  202 (439)
                      .+++++++++.++ .++.++.+      ..++++.|+++++ .++.. +...+..+++|++|+++++ .+..++..    
T Consensus         8 ~l~~l~~l~~~~~-~l~~ip~~------~~~~l~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~----   73 (290)
T 1p9a_G            8 KVASHLEVNCDKR-NLTALPPD------LPKDTTILHLSEN-LLYTF-SLATLMPYTRLTQLNLDRA-ELTKLQVD----   73 (290)
T ss_dssp             CSTTCCEEECTTS-CCSSCCSC------CCTTCCEEECTTS-CCSEE-EGGGGTTCTTCCEEECTTS-CCCEEECC----
T ss_pred             ccCCccEEECCCC-CCCcCCCC------CCCCCCEEEcCCC-cCCcc-CHHHhhcCCCCCEEECCCC-ccCcccCC----
Confidence            4677888888754 35554433      3478999999886 45554 3344788899999999976 44444331    


Q ss_pred             cccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeee
Q 046857          203 ADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLL  282 (439)
Q Consensus       203 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~  282 (439)
                            . .+++|++|+++++ .++.++...   ..+++|+.|++.++ .+..+++.                       
T Consensus        74 ------~-~l~~L~~L~Ls~N-~l~~l~~~~---~~l~~L~~L~l~~N-~l~~l~~~-----------------------  118 (290)
T 1p9a_G           74 ------G-TLPVLGTLDLSHN-QLQSLPLLG---QTLPALTVLDVSFN-RLTSLPLG-----------------------  118 (290)
T ss_dssp             ------S-CCTTCCEEECCSS-CCSSCCCCT---TTCTTCCEEECCSS-CCCCCCSS-----------------------
T ss_pred             ------C-CCCcCCEEECCCC-cCCcCchhh---ccCCCCCEEECCCC-cCcccCHH-----------------------
Confidence                  1 2388999999887 455665433   37788999998884 44444322                       


Q ss_pred             ccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEEccCCC
Q 046857          283 AHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQVSKCHG  361 (439)
Q Consensus       283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~  361 (439)
                               ....+++|+.|+++++ .++.++.+.+.   .+++|+.|+++++ .++.+|... ..+++|++|+++++ +
T Consensus       119 ---------~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~  183 (290)
T 1p9a_G          119 ---------ALRGLGELQELYLKGN-ELKTLPPGLLT---PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-S  183 (290)
T ss_dssp             ---------TTTTCTTCCEEECTTS-CCCCCCTTTTT---TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             ---------HHcCCCCCCEEECCCC-CCCccChhhcc---cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-c
Confidence                     1335678999998885 46666554333   6789999999887 567777665 57999999999984 5


Q ss_pred             cccccChhHHhhccccceEEEcccc
Q 046857          362 LINVLTLSASKNLVNLGRMKIVDCK  386 (439)
Q Consensus       362 l~~l~p~~~~~~l~~L~~L~l~~c~  386 (439)
                      ++.+ |..+ ...++|+.+++.+++
T Consensus       184 l~~i-p~~~-~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          184 LYTI-PKGF-FGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCC-CTTT-TTTCCCSEEECCSCC
T ss_pred             CCcc-Chhh-cccccCCeEEeCCCC
Confidence            8876 6644 456789999998753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.33  E-value=2.2e-11  Score=111.15  Aligned_cols=198  Identities=18%  Similarity=0.184  Sum_probs=124.7

Q ss_pred             cCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC-Cc
Q 046857           11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG-IV   89 (439)
Q Consensus        11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~   89 (439)
                      +.+.++++++. ++.+|..+          .++++.|+++++ ++..++. ..+..+++|++|+++++ .+..+|.. +.
T Consensus        17 ~~~~l~~~~~~-l~~ip~~~----------~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~i~~~~~~   82 (270)
T 2o6q_A           17 NKNSVDCSSKK-LTAIPSNI----------PADTKKLDLQSN-KLSSLPS-KAFHRLTKLRLLYLNDN-KLQTLPAGIFK   82 (270)
T ss_dssp             TTTEEECTTSC-CSSCCSCC----------CTTCSEEECCSS-CCSCCCT-TSSSSCTTCCEEECCSS-CCSCCCTTTTS
T ss_pred             CCCEEEccCCC-CCccCCCC----------CCCCCEEECcCC-CCCeeCH-HHhcCCCCCCEEECCCC-ccCeeChhhhc
Confidence            46677777764 55565532          357888888883 3444322 13667888999999885 56666655 36


Q ss_pred             CccCccceeecCceeeecCcCchhhhhhhh-hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccc
Q 046857           90 STPKLHEVQEEGELCRWEGNLNSTIQKCYE-EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSS  168 (439)
Q Consensus        90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~  168 (439)
                      .+++|++|+++++.+.          .++. .+..+++|++|+++++. +..++...   ...+++|++|+++++ .++.
T Consensus        83 ~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~  147 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQ----------ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRV---FDSLTKLTYLSLGYN-ELQS  147 (270)
T ss_dssp             SCTTCCEEECCSSCCC----------CCCTTTTTTCSSCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCC
T ss_pred             CCCCCCEEECCCCcCC----------cCCHhHcccccCCCEEECCCCc-cCeeCHHH---hCcCcCCCEEECCCC-cCCc
Confidence            7888888888884433          2222 23467888888888654 44443322   135788888888886 4555


Q ss_pred             ccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEe
Q 046857          169 AIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIE  248 (439)
Q Consensus       169 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~  248 (439)
                       ++...+..+++|++|+++++ .+..++.        ..+..+ ++|++|+++++ .++.++...  ...+++|+.|++.
T Consensus       148 -~~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~~~~~l-~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~  213 (270)
T 2o6q_A          148 -LPKGVFDKLTSLKELRLYNN-QLKRVPE--------GAFDKL-TELKTLKLDNN-QLKRVPEGA--FDSLEKLKMLQLQ  213 (270)
T ss_dssp             -CCTTTTTTCTTCCEEECCSS-CCSCCCT--------TTTTTC-TTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECC
T ss_pred             -cCHhHccCCcccceeEecCC-cCcEeCh--------hHhccC-CCcCEEECCCC-cCCcCCHHH--hccccCCCEEEec
Confidence             45454677888888888876 3433322        011123 78888888876 455544332  1357788888887


Q ss_pred             cCC
Q 046857          249 NCP  251 (439)
Q Consensus       249 ~c~  251 (439)
                      +++
T Consensus       214 ~N~  216 (270)
T 2o6q_A          214 ENP  216 (270)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.33  E-value=3.6e-12  Score=116.47  Aligned_cols=175  Identities=15%  Similarity=0.183  Sum_probs=89.7

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh-
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE-  119 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-  119 (439)
                      +++|+.|++.++ .+.++   +.+..+++|++|++++|. +..++ .+..+++|++|++++|.+.          .++. 
T Consensus        40 l~~L~~L~l~~~-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~----------~~~~~  103 (272)
T 3rfs_A           40 LNSIDQIIANNS-DIKSV---QGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQ----------SLPNG  103 (272)
T ss_dssp             HTTCCEEECTTS-CCCCC---TTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCC----------CCCTT
T ss_pred             ccceeeeeeCCC-Ccccc---cccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccC----------ccChh
Confidence            556666666662 22222   335556666666666643 44443 4556666666666664322          1111 


Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                      .+..+++|++|+++++. +..++...   ...+++|++|+++++ .++. ++...+..+++|++|++++| .+..++.  
T Consensus       104 ~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~--  174 (272)
T 3rfs_A          104 VFDKLTNLKELVLVENQ-LQSLPDGV---FDKLTNLTYLNLAHN-QLQS-LPKGVFDKLTNLTELDLSYN-QLQSLPE--  174 (272)
T ss_dssp             TTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCT--
T ss_pred             HhcCCcCCCEEECCCCc-CCccCHHH---hccCCCCCEEECCCC-ccCc-cCHHHhccCccCCEEECCCC-CcCccCH--
Confidence            12346666677766544 33333221   124566777777665 4444 33333556667777777765 2332221  


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                            ..+..+ ++|+.|+++++. +..++...  ...+++|+.|++.++
T Consensus       175 ------~~~~~l-~~L~~L~L~~N~-l~~~~~~~--~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          175 ------GVFDKL-TQLKDLRLYQNQ-LKSVPDGV--FDRLTSLQYIWLHDN  215 (272)
T ss_dssp             ------TTTTTC-TTCCEEECCSSC-CSCCCTTT--TTTCTTCCEEECCSS
T ss_pred             ------HHhcCC-ccCCEEECCCCc-CCccCHHH--HhCCcCCCEEEccCC
Confidence                  001113 667777776653 33332221  135667777777665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.32  E-value=5.2e-12  Score=115.38  Aligned_cols=182  Identities=19%  Similarity=0.263  Sum_probs=127.6

Q ss_pred             CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS   85 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~   85 (439)
                      ...+++|+.|++.+|. +..++. +.        .+++|++|+++++ ++..+   +.+..+++|++|++++| .++.++
T Consensus        37 ~~~l~~L~~L~l~~~~-i~~~~~-l~--------~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~n-~l~~~~  101 (272)
T 3rfs_A           37 QNELNSIDQIIANNSD-IKSVQG-IQ--------YLPNVRYLALGGN-KLHDI---SALKELTNLTYLILTGN-QLQSLP  101 (272)
T ss_dssp             HHHHTTCCEEECTTSC-CCCCTT-GG--------GCTTCCEEECTTS-CCCCC---GGGTTCTTCCEEECTTS-CCCCCC
T ss_pred             cccccceeeeeeCCCC-cccccc-cc--------cCCCCcEEECCCC-CCCCc---hhhcCCCCCCEEECCCC-ccCccC
Confidence            4567889999999986 444432 22        5899999999993 33333   45778999999999997 566655


Q ss_pred             cC-CcCccCccceeecCceeeecCcCchhhhhhhh-hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857           86 QG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE-EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC  163 (439)
Q Consensus        86 ~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~  163 (439)
                      .. ++.+++|++|++++|.+.          .++. .+..+++|++|+++++. +..++...   ...+++|+.|+++++
T Consensus       102 ~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQLQ----------SLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGV---FDKLTNLTELDLSYN  167 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS
T ss_pred             hhHhcCCcCCCEEECCCCcCC----------ccCHHHhccCCCCCEEECCCCc-cCccCHHH---hccCccCCEEECCCC
Confidence            44 688999999999995543          2222 24568899999999774 55544332   136889999999997


Q ss_pred             cccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccc
Q 046857          164 TNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKR  228 (439)
Q Consensus       164 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  228 (439)
                       .+++ ++...+..+++|++|++++|. +..++.        ..+..+ ++|+.|++.+++....
T Consensus       168 -~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------~~~~~l-~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          168 -QLQS-LPEGVFDKLTQLKDLRLYQNQ-LKSVPD--------GVFDRL-TSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             -CCCC-CCTTTTTTCTTCCEEECCSSC-CSCCCT--------TTTTTC-TTCCEEECCSSCBCCC
T ss_pred             -CcCc-cCHHHhcCCccCCEEECCCCc-CCccCH--------HHHhCC-cCCCEEEccCCCcccc
Confidence             5665 455557889999999999874 443322        111224 8999999998754433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.31  E-value=4.5e-11  Score=108.99  Aligned_cols=178  Identities=18%  Similarity=0.162  Sum_probs=88.1

Q ss_pred             CCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccC
Q 046857          153 NYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNF  232 (439)
Q Consensus       153 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  232 (439)
                      +++++|+++++ .++.. +...+..+++|++|+++++ .+..++.        ..+..+ ++|++|+++++. ++.++..
T Consensus        37 ~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~i~~--------~~~~~l-~~L~~L~l~~n~-l~~~~~~  103 (270)
T 2o6q_A           37 ADTKKLDLQSN-KLSSL-PSKAFHRLTKLRLLYLNDN-KLQTLPA--------GIFKEL-KNLETLWVTDNK-LQALPIG  103 (270)
T ss_dssp             TTCSEEECCSS-CCSCC-CTTSSSSCTTCCEEECCSS-CCSCCCT--------TTTSSC-TTCCEEECCSSC-CCCCCTT
T ss_pred             CCCCEEECcCC-CCCee-CHHHhcCCCCCCEEECCCC-ccCeeCh--------hhhcCC-CCCCEEECCCCc-CCcCCHh
Confidence            45666666554 34432 3223555666666666654 2222211        001112 566666666542 3333221


Q ss_pred             CCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCcee
Q 046857          233 TGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQH  312 (439)
Q Consensus       233 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  312 (439)
                      .  ...+++|+.|++.++ .+..+++.                                ....+++|++|+++++ .++.
T Consensus       104 ~--~~~l~~L~~L~l~~n-~l~~~~~~--------------------------------~~~~l~~L~~L~Ls~n-~l~~  147 (270)
T 2o6q_A          104 V--FDQLVNLAELRLDRN-QLKSLPPR--------------------------------VFDSLTKLTYLSLGYN-ELQS  147 (270)
T ss_dssp             T--TTTCSSCCEEECCSS-CCCCCCTT--------------------------------TTTTCTTCCEEECCSS-CCCC
T ss_pred             H--cccccCCCEEECCCC-ccCeeCHH--------------------------------HhCcCcCCCEEECCCC-cCCc
Confidence            1  124566666666653 23332211                                1224456666666654 3444


Q ss_pred             ccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857          313 LWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       313 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c  385 (439)
                      ++...+.   .+++|++|+++++ .++.++.. +..+++|++|+++++ +++.+ |...+..+++|+.|+++++
T Consensus       148 ~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          148 LPKGVFD---KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRV-PEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CCTTTTT---TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred             cCHhHcc---CCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcC-CHHHhccccCCCEEEecCC
Confidence            4333222   5566667766665 34444432 445667777777664 46655 4334455667777777655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=1.4e-11  Score=106.71  Aligned_cols=126  Identities=13%  Similarity=0.148  Sum_probs=54.6

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE  120 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~  120 (439)
                      +++|++|+++++ .+..+   +.+..+++|++|++++|..-...+..++.+++|++|++++|.+.         ...+..
T Consensus        65 l~~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~---------~~~~~~  131 (197)
T 4ezg_A           65 AHNIKDLTINNI-HATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD---------DSILTK  131 (197)
T ss_dssp             CTTCSEEEEESC-CCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB---------GGGHHH
T ss_pred             CCCCCEEEccCC-CCCcc---hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC---------cHhHHH
Confidence            455555555553 22222   23444555555555554222223444555555555555552211         112233


Q ss_pred             hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecc
Q 046857          121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRN  188 (439)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~  188 (439)
                      +..+++|++|+++++..+.+++.     ...+++|+.|++++| .+++ ++  .+..+++|++|++++
T Consensus       132 l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n-~i~~-~~--~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          132 INTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFD-GVHD-YR--GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             HTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTB-CCCC-CT--TGGGCSSCCEEEECB
T ss_pred             HhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCC-CCcC-hH--HhccCCCCCEEEeeC
Confidence            33455555555554433333321     123445555555444 2332 12  134445555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.28  E-value=5.2e-12  Score=117.73  Aligned_cols=230  Identities=15%  Similarity=0.047  Sum_probs=131.8

Q ss_pred             ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCc--cCCCCccEEeeccCCCccccc--
Q 046857           10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYT--LEFPSLERVSMTRCPNMKTFS--   85 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~L~~L~l~~c~~l~~l~--   85 (439)
                      ..++.|.+.++............     ...+++|++|+++++. +..... ..+  ..+++|++|++++|..-...+  
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~n~-l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~  136 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALR-----VLAYSRLKELTLEDLK-ITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWL  136 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHH-----HHHHSCCCEEEEESCC-CBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred             cceeEEEEeCCcCCHHHHHHHHH-----hcccCceeEEEeeCCE-eccchh-hhhhhccCCCCCEEEeecccccchhhhh
Confidence            34677777777532221111100     0124678888888842 222211 112  668888888888864332222  


Q ss_pred             --cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee--ecCCCCCCcCccCCccEEEec
Q 046857           86 --QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE--IWHGQALPVRFFNYLAELEVD  161 (439)
Q Consensus        86 --~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--i~~~~~l~~~~~~~L~~L~l~  161 (439)
                        ..+..+++|++|++++|.+...         .+..+..+++|++|+++++.....  ++...  ....+++|++|+++
T Consensus       137 ~~~~~~~~~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          137 AELQQWLKPGLKVLSIAQAHSPAF---------SCEQVRAFPALTSLDLSDNPGLGERGLMAAL--CPHKFPAIQNLALR  205 (310)
T ss_dssp             HHHHTTBCSCCCEEEEECCSSCCC---------CTTSCCCCTTCCEEECCSCTTCHHHHHHTTS--CTTSSCCCCSCBCC
T ss_pred             HHHHhhhccCCCEEEeeCCCcchh---------hHHHhccCCCCCEEECCCCCCccchhhhHHH--hhhcCCCCCEEECC
Confidence              2334688888888888443211         123445678889999887763321  11111  01357889999998


Q ss_pred             cccccccccch---hHHhhccccceeeeccccccchh-cc-ccccccccCcccccccccceEecCCcccccccccCCCcc
Q 046857          162 YCTNMSSAIPA---NLLRCLNNLARLEVRNCDSLEEM-LH-LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNI  236 (439)
Q Consensus       162 ~~~~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  236 (439)
                      +| .++. ++.   ..++.+++|++|+++++. +... +. +....       .. ++|++|+++++ .++.++...   
T Consensus       206 ~N-~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~-------~~-~~L~~L~Ls~N-~l~~lp~~~---  270 (310)
T 4glp_A          206 NT-GMET-PTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCM-------WS-SALNSLNLSFA-GLEQVPKGL---  270 (310)
T ss_dssp             SS-CCCC-HHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCC-------CC-TTCCCEECCSS-CCCSCCSCC---
T ss_pred             CC-CCCc-hHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhcc-------Cc-CcCCEEECCCC-CCCchhhhh---
Confidence            87 4542 222   235677899999999764 3332 21 11111       12 68999999887 455554433   


Q ss_pred             cCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcce
Q 046857          237 IEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEE  278 (439)
Q Consensus       237 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~  278 (439)
                        +++|+.|+++++ .+..++.   ...+++|+.|  +.+.+.+
T Consensus       271 --~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          271 --PAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             --CSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred             --cCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCCCCCC
Confidence              278999999885 4555432   2567888877  5555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=2.2e-12  Score=124.21  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=45.6

Q ss_pred             cccCccceEeecCCCCce-----eccccCCccccccCCcceEEeecCCCccc----ccCCC--ccCCCcceEEEccCCCc
Q 046857          294 VAFPQLRKLRLSGLHKVQ-----HLWKENDESNKVFANLERLEISECSKLQK----LVPPS--WHLENLWGLQVSKCHGL  362 (439)
Q Consensus       294 ~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~~L~~L~l~~c~~l~~----l~~~~--~~l~~L~~L~l~~c~~l  362 (439)
                      ..+++|+.|+++++. ++     .++. .+   ..+++|++|++++|..-..    ++..+  +.+++|++|++++|. +
T Consensus       213 ~~~~~L~~L~Ls~n~-l~~~g~~~l~~-~l---~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i  286 (386)
T 2ca6_A          213 AYCQELKVLDLQDNT-FTHLGSSALAI-AL---KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-I  286 (386)
T ss_dssp             GGCTTCCEEECCSSC-CHHHHHHHHHH-HG---GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-C
T ss_pred             hcCCCccEEECcCCC-CCcHHHHHHHH-HH---ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-C
Confidence            355667777776653 32     1111 11   1556777777766642221    23333  236677777777643 5


Q ss_pred             cc----ccChhHHhhccccceEEEccc
Q 046857          363 IN----VLTLSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       363 ~~----l~p~~~~~~l~~L~~L~l~~c  385 (439)
                      +.    .+|..+...+++|+.|++++|
T Consensus       287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          287 ELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             BHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            54    124444345677777777666

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.27  E-value=6.2e-11  Score=108.41  Aligned_cols=183  Identities=19%  Similarity=0.214  Sum_probs=120.1

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-CCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE  120 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~  120 (439)
                      ++|++|+++++ ++..++. ..+..+++|++|++++| .++.++. .+..+++|++|+++++.+....         +..
T Consensus        28 ~~l~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~~   95 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLA---------LGA   95 (276)
T ss_dssp             TTCCEEECTTC-CCCEECT-TTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEEC---------TTT
T ss_pred             CCccEEECCCC-cccccCH-hHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccC---------hhh
Confidence            57999999983 4444432 13677999999999997 5666554 6788999999999995433211         134


Q ss_pred             hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc-cchhHHhhccccceeeeccccccchhcccc
Q 046857          121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA-IPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                      +.++++|++|+++++. +..++...   ...+++|++|+++++. ++.. +|.. +..+++|++|+++++. +..++. .
T Consensus        96 ~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~-l~~~~~-~  167 (276)
T 2z62_A           96 FSGLSSLQKLVAVETN-LASLENFP---IGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNK-IQSIYC-T  167 (276)
T ss_dssp             TTTCTTCCEEECTTSC-CCCSTTCC---CTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSC-CCEECG-G
T ss_pred             hcCCccccEEECCCCC-ccccCchh---cccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCC-CCcCCH-H
Confidence            5568999999999765 44433321   2468999999999864 4442 3544 7889999999999873 433321 0


Q ss_pred             ccccccCcccccccccc----eEecCCcccccccccCCCcccCCCCccEEeEecCCCcceec
Q 046857          200 ELNADKEHIGPLFPRLF----SLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFI  257 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  257 (439)
                      .+       ..+ ++|+    .|+++++ .+..++....   ...+|+.|++.++ .+..++
T Consensus       168 ~~-------~~l-~~L~~l~l~L~ls~n-~l~~~~~~~~---~~~~L~~L~L~~n-~l~~~~  216 (276)
T 2z62_A          168 DL-------RVL-HQMPLLNLSLDLSLN-PMNFIQPGAF---KEIRLKELALDTN-QLKSVP  216 (276)
T ss_dssp             GG-------HHH-HTCTTCCEEEECCSS-CCCEECTTSS---CSCCEEEEECCSS-CCSCCC
T ss_pred             Hh-------hhh-hhccccceeeecCCC-cccccCcccc---CCCcccEEECCCC-ceeecC
Confidence            01       112 4454    7888876 3555544332   4458999999885 355443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=1.6e-12  Score=125.05  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=54.1

Q ss_pred             cccCccceEeecCCCCceeccccCC-ccc--cccCCcceEEeecCCCcc----cccCCC-ccCCCcceEEEccCCCcccc
Q 046857          294 VAFPQLRKLRLSGLHKVQHLWKEND-ESN--KVFANLERLEISECSKLQ----KLVPPS-WHLENLWGLQVSKCHGLINV  365 (439)
Q Consensus       294 ~~~~~L~~L~l~~~~~l~~l~~~~~-~~~--~~~~~L~~L~l~~c~~l~----~l~~~~-~~l~~L~~L~l~~c~~l~~l  365 (439)
                      ..+++|+.|+++++. ++......+ ...  ..+++|++|++++|..-.    .++..+ .++++|++|++++|+ ++..
T Consensus       241 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~  318 (386)
T 2ca6_A          241 KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEE  318 (386)
T ss_dssp             GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTT
T ss_pred             ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcc
Confidence            355677777777653 332211100 000  137889999998875433    366666 468999999999865 6554


Q ss_pred             cC--hhHHhhccccceEEEccc
Q 046857          366 LT--LSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       366 ~p--~~~~~~l~~L~~L~l~~c  385 (439)
                      .+  ..+...+++++.+++..-
T Consensus       319 ~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          319 DDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             SHHHHHHHHHHHHHTCCEECCC
T ss_pred             hhHHHHHHHHhhhcCcchhhhc
Confidence            32  345556677776666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.22  E-value=2.8e-11  Score=111.69  Aligned_cols=167  Identities=13%  Similarity=0.200  Sum_probs=113.8

Q ss_pred             cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      .+++|+.|+++++ .+.++   +.+..+++|++|++++| .+..++. +..+++|++|++++|.+.          .++ 
T Consensus        44 ~l~~L~~L~l~~~-~i~~~---~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~----------~~~-  106 (291)
T 1h6t_A           44 ELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVK----------DLS-  106 (291)
T ss_dssp             HHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC----------CGG-
T ss_pred             hcCcccEEEccCC-CcccC---hhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCC----------CCh-
Confidence            4678888888883 33333   34667888888888886 5566655 778888888888885432          222 


Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                      .+..+++|++|+++++. +..++.     ...+++|+.|+++++ .+++.   ..+..+++|++|++++| .+..+..+.
T Consensus       107 ~l~~l~~L~~L~L~~n~-i~~~~~-----l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~l~  175 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNG-ISDING-----LVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVPLA  175 (291)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCCGG-----GGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGGGT
T ss_pred             hhccCCCCCEEECCCCc-CCCChh-----hcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccchhhc
Confidence            25568888888888664 544321     136788999999886 45543   23778889999999876 444443321


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                                .+ ++|+.|+++++ .++.++.    ...+++|+.|++.++
T Consensus       176 ----------~l-~~L~~L~L~~N-~i~~l~~----l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          176 ----------GL-TKLQNLYLSKN-HISDLRA----LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             ----------TC-TTCCEEECCSS-CCCBCGG----GTTCTTCSEEEEEEE
T ss_pred             ----------CC-CccCEEECCCC-cCCCChh----hccCCCCCEEECcCC
Confidence                      13 88999999887 4555532    247899999999885

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.21  E-value=9.3e-11  Score=108.12  Aligned_cols=162  Identities=17%  Similarity=0.257  Sum_probs=74.0

Q ss_pred             CCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCC
Q 046857           66 EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQ  145 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~  145 (439)
                      .+++|++|++++| .++.++ ++..+++|++|++++|.+.          .++. +..+++|+.|+++++. +..++.  
T Consensus        44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~----------~~~~-l~~l~~L~~L~l~~n~-l~~~~~--  107 (291)
T 1h6t_A           44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLT----------DIKP-LANLKNLGWLFLDENK-VKDLSS--  107 (291)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCC----------CCGG-GTTCTTCCEEECCSSC-CCCGGG--
T ss_pred             hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccC----------CCcc-cccCCCCCEEECCCCc-CCCChh--
Confidence            4555666666654 344443 2455566666666553322          1111 3345556666665443 333221  


Q ss_pred             CCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccc
Q 046857          146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPK  225 (439)
Q Consensus       146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  225 (439)
                         ...+++|++|+++++ .+++ ++  .+..+++|++|++++| .+..+..+          ..+ ++|+.|+++++ .
T Consensus       108 ---l~~l~~L~~L~L~~n-~i~~-~~--~l~~l~~L~~L~l~~n-~l~~~~~l----------~~l-~~L~~L~L~~N-~  167 (291)
T 1h6t_A          108 ---LKDLKKLKSLSLEHN-GISD-IN--GLVHLPQLESLYLGNN-KITDITVL----------SRL-TKLDTLSLEDN-Q  167 (291)
T ss_dssp             ---GTTCTTCCEEECTTS-CCCC-CG--GGGGCTTCCEEECCSS-CCCCCGGG----------GGC-TTCSEEECCSS-C
T ss_pred             ---hccCCCCCEEECCCC-cCCC-Ch--hhcCCCCCCEEEccCC-cCCcchhh----------ccC-CCCCEEEccCC-c
Confidence               124555666666554 3333 12  1445556666666554 22222111          112 55666666555 2


Q ss_pred             ccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC
Q 046857          226 LKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP  271 (439)
Q Consensus       226 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  271 (439)
                      ++.++.    ...+++|+.|++.++ .+..++.   ...+++|+.|
T Consensus       168 l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L  205 (291)
T 1h6t_A          168 ISDIVP----LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVL  205 (291)
T ss_dssp             CCCCGG----GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEE
T ss_pred             cccchh----hcCCCccCEEECCCC-cCCCChh---hccCCCCCEE
Confidence            333221    224556666666553 3333321   2344555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.18  E-value=8.8e-11  Score=101.68  Aligned_cols=150  Identities=14%  Similarity=0.232  Sum_probs=95.6

Q ss_pred             cCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee-ecC
Q 046857           65 LEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE-IWH  143 (439)
Q Consensus        65 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-i~~  143 (439)
                      ..+++|++|+++++ .+..+| ++..+++|++|++++|.+.          .+ ..+..+++|++|+++++. +.. .+.
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~----------~~-~~l~~l~~L~~L~l~~n~-l~~~~~~  106 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHAT----------NY-NPISGLSNLERLRIMGKD-VTSDKIP  106 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCS----------CC-GGGTTCTTCCEEEEECTT-CBGGGSC
T ss_pred             hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCC----------cc-hhhhcCCCCCEEEeECCc-cCcccCh
Confidence            35677777777774 455666 5667777777777774221          11 133457778888887654 332 222


Q ss_pred             CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCc
Q 046857          144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDL  223 (439)
Q Consensus       144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  223 (439)
                      ..    ..+++|+.|+++++ .+++..+.. +..+++|++|++++|..+..++.+.          .+ ++|+.|+++++
T Consensus       107 ~l----~~l~~L~~L~Ls~n-~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~----------~l-~~L~~L~l~~n  169 (197)
T 4ezg_A          107 NL----SGLTSLTLLDISHS-AHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLK----------TL-PELKSLNIQFD  169 (197)
T ss_dssp             CC----TTCTTCCEEECCSS-BCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGG----------GC-SSCCEEECTTB
T ss_pred             hh----cCCCCCCEEEecCC-ccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhc----------CC-CCCCEEECCCC
Confidence            21    35788888888886 455434443 7788888899888876465554322          13 88888888887


Q ss_pred             ccccccccCCCcccCCCCccEEeEecC
Q 046857          224 PKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       224 ~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                      . +..++    ....+++|+.|++.+.
T Consensus       170 ~-i~~~~----~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          170 G-VHDYR----GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             C-CCCCT----TGGGCSSCCEEEECBC
T ss_pred             C-CcChH----HhccCCCCCEEEeeCc
Confidence            3 44443    2236788888888874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.17  E-value=1.5e-10  Score=107.77  Aligned_cols=114  Identities=12%  Similarity=0.093  Sum_probs=55.0

Q ss_pred             CCCccEEeeccCCCccccccCC--cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCC
Q 046857           67 FPSLERVSMTRCPNMKTFSQGI--VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHG  144 (439)
Q Consensus        67 l~~L~~L~l~~c~~l~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~  144 (439)
                      +++|++|++++|..-...|..+  ..+++|++|++++|.+......   ...  ..+..+++|++|+++++. +..++..
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---~~~--~~~~~~~~L~~L~Ls~n~-l~~~~~~  163 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW---LAE--LQQWLKPGLKVLSIAQAH-SPAFSCE  163 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS---HHH--HHTTBCSCCCEEEEECCS-SCCCCTT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh---hHH--HHhhhccCCCEEEeeCCC-cchhhHH
Confidence            4567777777765444555555  6677777777777543321100   000  122245666666666544 3322221


Q ss_pred             CCCCcCccCCccEEEecccccccc--ccchhHHhhccccceeeeccc
Q 046857          145 QALPVRFFNYLAELEVDYCTNMSS--AIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       145 ~~l~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      .   ...+++|++|++++++-...  ..+...+..+++|++|++++|
T Consensus       164 ~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N  207 (310)
T 4glp_A          164 Q---VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT  207 (310)
T ss_dssp             S---CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred             H---hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence            1   12455666666666532211  001111234555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.17  E-value=5.1e-11  Score=120.71  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=25.6

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCc
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGE  102 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~  102 (439)
                      +++|+.|+|+++ ++..+   +.+..+++|+.|++++| .+..+| .+..+++|+.|++++|
T Consensus        64 l~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           64 LPNVTKLFLNGN-KLTDI---KPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             CTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTS
T ss_pred             CCCCCEEEeeCC-CCCCC---hhhccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCC
Confidence            455555555552 12222   22444555555555554 333333 3445555555555553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.15  E-value=3.4e-11  Score=122.06  Aligned_cols=168  Identities=13%  Similarity=0.184  Sum_probs=122.9

Q ss_pred             cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      .+++|+.|+++++ .+.++   +.+..+++|+.|++++| .+..++. +..+++|+.|++++|.+..          ++ 
T Consensus        41 ~L~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~----------l~-  103 (605)
T 1m9s_A           41 ELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKD----------LS-  103 (605)
T ss_dssp             HHTTCCCCBCTTC-CCCCC---TTGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCC----------CT-
T ss_pred             cCCCCCEEECcCC-CCCCC---hHHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCC----------Ch-
Confidence            4789999999983 33444   45778999999999997 5666665 7889999999999965432          22 


Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                      .+..+++|+.|+++++. +..++.     ...+++|+.|++++| .+++.   ..+..+++|+.|++++| .+..+.++.
T Consensus       104 ~l~~l~~L~~L~Ls~N~-l~~l~~-----l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~l~  172 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNG-ISDING-----LVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVPLA  172 (605)
T ss_dssp             TSTTCTTCCEEECTTSC-CCCCGG-----GGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGGGT
T ss_pred             hhccCCCCCEEEecCCC-CCCCcc-----ccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchhhc
Confidence            45568999999999765 544432     246899999999987 56653   23788999999999987 444443322


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCC
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP  251 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~  251 (439)
                                .+ ++|+.|+|+++ .+..++    ....+++|+.|++.+++
T Consensus       173 ----------~l-~~L~~L~Ls~N-~i~~l~----~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          173 ----------GL-TKLQNLYLSKN-HISDLR----ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ----------TC-TTCCEEECCSS-CCCBCG----GGTTCTTCSEEECCSEE
T ss_pred             ----------cC-CCCCEEECcCC-CCCCCh----HHccCCCCCEEEccCCc
Confidence                      13 89999999997 455543    23478999999999863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.13  E-value=3.5e-10  Score=101.91  Aligned_cols=175  Identities=17%  Similarity=0.165  Sum_probs=120.7

Q ss_pred             ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cCC
Q 046857           10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QGI   88 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~   88 (439)
                      .+.++++++++. ++.+|..+          .++++.|++++ .++..+.. ..+..+++|++|+++++ .++.++ ..+
T Consensus        14 ~~~~~l~~~~~~-l~~~p~~~----------~~~l~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~   79 (251)
T 3m19_A           14 EGKKEVDCQGKS-LDSVPSGI----------PADTEKLDLQS-TGLATLSD-ATFRGLTKLTWLNLDYN-QLQTLSAGVF   79 (251)
T ss_dssp             GGGTEEECTTCC-CSSCCSCC----------CTTCCEEECTT-SCCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred             CCCeEEecCCCC-ccccCCCC----------CCCCCEEEccC-CCcCccCH-hHhcCcccCCEEECCCC-cCCccCHhHh
Confidence            456788888764 66666543          35899999998 33343322 23667899999999996 555554 447


Q ss_pred             cCccCccceeecCceeeecCcCchhhhhhh-hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857           89 VSTPKLHEVQEEGELCRWEGNLNSTIQKCY-EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS  167 (439)
Q Consensus        89 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~  167 (439)
                      ..+++|++|+++++.+.          .++ ..+..+++|++|+++++. +..++...   ...+++|+.|+++++ .++
T Consensus        80 ~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N-~l~  144 (251)
T 3m19_A           80 DDLTELGTLGLANNQLA----------SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGV---FDRLTKLKELRLNTN-QLQ  144 (251)
T ss_dssp             TTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCC
T ss_pred             ccCCcCCEEECCCCccc----------ccChhHhcccCCCCEEEcCCCc-CCCcChhH---hccCCcccEEECcCC-cCC
Confidence            88999999999985543          222 234568899999999764 65554432   135889999999886 566


Q ss_pred             cccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857          168 SAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                      . ++...+..+++|++|+++++ .+..++.        ..+..+ ++|+.|++.+++
T Consensus       145 ~-~~~~~~~~l~~L~~L~L~~N-~l~~~~~--------~~~~~l-~~L~~L~l~~N~  190 (251)
T 3m19_A          145 S-IPAGAFDKLTNLQTLSLSTN-QLQSVPH--------GAFDRL-GKLQTITLFGNQ  190 (251)
T ss_dssp             C-CCTTTTTTCTTCCEEECCSS-CCSCCCT--------TTTTTC-TTCCEEECCSCC
T ss_pred             c-cCHHHcCcCcCCCEEECCCC-cCCccCH--------HHHhCC-CCCCEEEeeCCc
Confidence            5 45444788999999999986 4444332        111223 899999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.12  E-value=4.8e-10  Score=100.98  Aligned_cols=173  Identities=19%  Similarity=0.153  Sum_probs=97.3

Q ss_pred             cccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceecc
Q 046857          179 NNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFIS  258 (439)
Q Consensus       179 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  258 (439)
                      ...+++++++. .+..++.            ...++++.|+++++. +..+....  ...+++|+.|++.++ .+..+++
T Consensus        14 ~~~~~l~~~~~-~l~~~p~------------~~~~~l~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~   76 (251)
T 3m19_A           14 EGKKEVDCQGK-SLDSVPS------------GIPADTEKLDLQSTG-LATLSDAT--FRGLTKLTWLNLDYN-QLQTLSA   76 (251)
T ss_dssp             GGGTEEECTTC-CCSSCCS------------CCCTTCCEEECTTSC-CCCCCTTT--TTTCTTCCEEECTTS-CCCCCCT
T ss_pred             CCCeEEecCCC-CccccCC------------CCCCCCCEEEccCCC-cCccCHhH--hcCcccCCEEECCCC-cCCccCH
Confidence            45677777754 4444432            022689999999874 44433221  237899999999985 5555543


Q ss_pred             ccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCC
Q 046857          259 NSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECS  336 (439)
Q Consensus       259 ~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~  336 (439)
                      .. ...+++|+.|  +.+.+..+++         .....+++|+.|+++++ .++.+....+.   .+++|++|+++++ 
T Consensus        77 ~~-~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-  141 (251)
T 3m19_A           77 GV-FDDLTELGTLGLANNQLASLPL---------GVFDHLTQLDKLYLGGN-QLKSLPSGVFD---RLTKLKELRLNTN-  141 (251)
T ss_dssp             TT-TTTCTTCCEEECTTSCCCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-
T ss_pred             hH-hccCCcCCEEECCCCcccccCh---------hHhcccCCCCEEEcCCC-cCCCcChhHhc---cCCcccEEECcCC-
Confidence            32 2455666666  4444544321         11234566666666664 34444333222   4566666666665 


Q ss_pred             CcccccC-CCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857          337 KLQKLVP-PSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       337 ~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c  385 (439)
                      .++.++. .+..+++|++|+++++ +++.+ +...+..+++|+.|++.++
T Consensus       142 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          142 QLQSIPAGAFDKLTNLQTLSLSTN-QLQSV-PHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSC
T ss_pred             cCCccCHHHcCcCcCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeCC
Confidence            4444544 3456666666666663 45555 3333455666666666665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.07  E-value=5.8e-10  Score=111.84  Aligned_cols=182  Identities=14%  Similarity=0.114  Sum_probs=121.4

Q ss_pred             cCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcC
Q 046857           11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVS   90 (439)
Q Consensus        11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~   90 (439)
                      +|+.|++++|. +..+|..          .+++|++|+++++ ++..++     ..+++|++|++++| .++.+|. +..
T Consensus        60 ~L~~L~Ls~n~-L~~lp~~----------l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~-l~~  120 (571)
T 3cvr_A           60 QFSELQLNRLN-LSSLPDN----------LPPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLPE-LPA  120 (571)
T ss_dssp             TCSEEECCSSC-CSCCCSC----------CCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-CCT
T ss_pred             CccEEEeCCCC-CCccCHh----------HcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcch-hhc
Confidence            88999999886 4556553          2468999999982 344443     45789999999996 5677877 554


Q ss_pred             ccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccccc
Q 046857           91 TPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI  170 (439)
Q Consensus        91 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~  170 (439)
                        +|++|++++|.+.          .+|.   .+++|+.|+++++. +..++      . .+++|+.|+++++ .++. +
T Consensus       121 --~L~~L~Ls~N~l~----------~lp~---~l~~L~~L~Ls~N~-l~~lp------~-~l~~L~~L~Ls~N-~L~~-l  175 (571)
T 3cvr_A          121 --SLKHLDVDNNQLT----------MLPE---LPALLEYINADNNQ-LTMLP------E-LPTSLEVLSVRNN-QLTF-L  175 (571)
T ss_dssp             --TCCEEECCSSCCS----------CCCC---CCTTCCEEECCSSC-CSCCC------C-CCTTCCEEECCSS-CCSC-C
T ss_pred             --CCCEEECCCCcCC----------CCCC---cCccccEEeCCCCc-cCcCC------C-cCCCcCEEECCCC-CCCC-c
Confidence              8999999884433          2333   47889999998665 44433      2 4678999999886 4665 4


Q ss_pred             chhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857          171 PANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       171 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                      |.  +.  ++|++|+++++ .+..++.+..      ......+.|+.|+++++ .++.++....   .+++|+.|++.++
T Consensus       176 p~--l~--~~L~~L~Ls~N-~L~~lp~~~~------~L~~~~~~L~~L~Ls~N-~l~~lp~~l~---~l~~L~~L~L~~N  240 (571)
T 3cvr_A          176 PE--LP--ESLEALDVSTN-LLESLPAVPV------RNHHSEETEIFFRCREN-RITHIPENIL---SLDPTCTIILEDN  240 (571)
T ss_dssp             CC--CC--TTCCEEECCSS-CCSSCCCCC--------------CCEEEECCSS-CCCCCCGGGG---GSCTTEEEECCSS
T ss_pred             ch--hh--CCCCEEECcCC-CCCchhhHHH------hhhcccccceEEecCCC-cceecCHHHh---cCCCCCEEEeeCC
Confidence            54  33  88999999876 5555443110      00000133488999886 5666666553   5888999999886


Q ss_pred             C
Q 046857          251 P  251 (439)
Q Consensus       251 ~  251 (439)
                      +
T Consensus       241 ~  241 (571)
T 3cvr_A          241 P  241 (571)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.06  E-value=3.1e-10  Score=102.93  Aligned_cols=165  Identities=16%  Similarity=0.185  Sum_probs=98.3

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE  120 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~  120 (439)
                      +.++..+++++ .++.++   +.+..+++|++|++++| .++.++ .++.+++|++|++++|.+.          .++. 
T Consensus        18 l~~l~~l~l~~-~~i~~~---~~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~----------~~~~-   80 (263)
T 1xeu_A           18 LANAVKQNLGK-QSVTDL---VSQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQIS----------DLSP-   80 (263)
T ss_dssp             HHHHHHHHHTC-SCTTSE---ECHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCC----------CCGG-
T ss_pred             HHHHHHHHhcC-CCcccc---cchhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccC----------CChh-
Confidence            45566666665 223333   23455677777777775 455565 5666777777777774322          2222 


Q ss_pred             hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccc
Q 046857          121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEE  200 (439)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  200 (439)
                      +..+++|+.|+++++. +..++...     . ++|+.|+++++ .+++ ++ . +..+++|++|+++++ .+..++.+. 
T Consensus        81 l~~l~~L~~L~L~~N~-l~~l~~~~-----~-~~L~~L~L~~N-~l~~-~~-~-l~~l~~L~~L~Ls~N-~i~~~~~l~-  147 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNR-LKNLNGIP-----S-ACLSRLFLDNN-ELRD-TD-S-LIHLKNLEILSIRNN-KLKSIVMLG-  147 (263)
T ss_dssp             GTTCSSCCEEECCSSC-CSCCTTCC-----C-SSCCEEECCSS-CCSB-SG-G-GTTCTTCCEEECTTS-CCCBCGGGG-
T ss_pred             hccCCCCCEEECCCCc-cCCcCccc-----c-CcccEEEccCC-ccCC-Ch-h-hcCcccccEEECCCC-cCCCChHHc-
Confidence            4457777777777554 44433221     2 77888888776 4554 23 2 667788888888875 344433211 


Q ss_pred             cccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857          201 LNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       201 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                               .+ ++|+.|+++++ .+..+ .   ....+++|+.|++.++
T Consensus       148 ---------~l-~~L~~L~L~~N-~i~~~-~---~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          148 ---------FL-SKLEVLDLHGN-EITNT-G---GLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             ---------GC-TTCCEEECTTS-CCCBC-T---TSTTCCCCCEEEEEEE
T ss_pred             ---------cC-CCCCEEECCCC-cCcch-H---HhccCCCCCEEeCCCC
Confidence                     13 78888888876 34433 1   2236788888888874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.04  E-value=3.8e-10  Score=102.40  Aligned_cols=167  Identities=14%  Similarity=0.134  Sum_probs=114.9

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      .+.+++.++++++. ++.++. +.        .+++|++|+++++ ++.++   +.+..+++|++|++++| .+..++. 
T Consensus        17 ~l~~l~~l~l~~~~-i~~~~~-~~--------~l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~L~~N-~i~~~~~-   80 (263)
T 1xeu_A           17 GLANAVKQNLGKQS-VTDLVS-QK--------ELSGVQNFNGDNS-NIQSL---AGMQFFTNLKELHLSHN-QISDLSP-   80 (263)
T ss_dssp             HHHHHHHHHHTCSC-TTSEEC-HH--------HHTTCSEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGG-
T ss_pred             HHHHHHHHHhcCCC-cccccc-hh--------hcCcCcEEECcCC-Ccccc---hHHhhCCCCCEEECCCC-ccCCChh-
Confidence            46667777777764 444442 22        4789999999984 44544   34678899999999986 5677766 


Q ss_pred             CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857           88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS  167 (439)
Q Consensus        88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~  167 (439)
                      +..+++|++|++++|.+...          +.. .. ++|+.|+++++. +..++.     ...+++|+.|+++++ .++
T Consensus        81 l~~l~~L~~L~L~~N~l~~l----------~~~-~~-~~L~~L~L~~N~-l~~~~~-----l~~l~~L~~L~Ls~N-~i~  141 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKNL----------NGI-PS-ACLSRLFLDNNE-LRDTDS-----LIHLKNLEILSIRNN-KLK  141 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSCC----------TTC-CC-SSCCEEECCSSC-CSBSGG-----GTTCTTCCEEECTTS-CCC
T ss_pred             hccCCCCCEEECCCCccCCc----------Ccc-cc-CcccEEEccCCc-cCCChh-----hcCcccccEEECCCC-cCC
Confidence            78899999999998554322          211 12 789999999764 554432     136889999999886 466


Q ss_pred             cccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857          168 SAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                      +. +  .+..+++|++|+++++ .+..+..          +..+ ++|+.|+++++.
T Consensus       142 ~~-~--~l~~l~~L~~L~L~~N-~i~~~~~----------l~~l-~~L~~L~l~~N~  183 (263)
T 1xeu_A          142 SI-V--MLGFLSKLEVLDLHGN-EITNTGG----------LTRL-KKVNWIDLTGQK  183 (263)
T ss_dssp             BC-G--GGGGCTTCCEEECTTS-CCCBCTT----------STTC-CCCCEEEEEEEE
T ss_pred             CC-h--HHccCCCCCEEECCCC-cCcchHH----------hccC-CCCCEEeCCCCc
Confidence            53 4  2778899999999986 3433321          1223 889999998874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.03  E-value=1.1e-10  Score=111.22  Aligned_cols=86  Identities=13%  Similarity=-0.052  Sum_probs=45.7

Q ss_pred             CccceEeecCCCCceeccccCCc-cccc-cCCcceEEeecCCCccc-----ccCCCccCCCcceEEEccCCCcccccCh-
Q 046857          297 PQLRKLRLSGLHKVQHLWKENDE-SNKV-FANLERLEISECSKLQK-----LVPPSWHLENLWGLQVSKCHGLINVLTL-  368 (439)
Q Consensus       297 ~~L~~L~l~~~~~l~~l~~~~~~-~~~~-~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l~p~-  368 (439)
                      ++|+.|+++++. ++......+. .... .++|++|++++|. ++.     +......+++|++|++++|. +..+.+. 
T Consensus       196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~  272 (362)
T 3goz_A          196 ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQ  272 (362)
T ss_dssp             TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHH
T ss_pred             CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHH
Confidence            488888888763 4432111000 0002 3478888888774 322     22334567788888888763 2222111 


Q ss_pred             --h---HHhhccccceEEEccc
Q 046857          369 --S---ASKNLVNLGRMKIVDC  385 (439)
Q Consensus       369 --~---~~~~l~~L~~L~l~~c  385 (439)
                        .   .+..+++|+.|+++++
T Consensus       273 ~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          273 CKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             HHHHHTTSTTCCEEEEECTTSC
T ss_pred             HHHHHHHhccCCceEEEecCCC
Confidence              0   1234566777777766

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.01  E-value=1.2e-09  Score=95.28  Aligned_cols=131  Identities=15%  Similarity=0.150  Sum_probs=80.5

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      .++|++|++++. ++..++. ..+..+++|++|+++++ .++.++.. +..+++|++|+++++.+.          .++.
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~   93 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPN-GVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ----------SLPN   93 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC----------CCCT
T ss_pred             CCCCcEEEcCCC-ccCcCCh-hhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCC----------ccCH
Confidence            457888888883 3333321 12456788888888885 55666544 467788888888774433          2222


Q ss_pred             h-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecccc
Q 046857          120 E-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCD  190 (439)
Q Consensus       120 ~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  190 (439)
                      . +..+++|++|+++++. +..++...   ...+++|+.|+++++ .++. ++...+..+++|++|+++++.
T Consensus        94 ~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           94 GVFDKLTQLKELALNTNQ-LQSLPDGV---FDKLTQLKDLRLYQN-QLKS-VPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSCC
T ss_pred             hHhcCccCCCEEEcCCCc-CcccCHhH---hccCCcCCEEECCCC-ccce-eCHHHhccCCCccEEEecCCC
Confidence            2 3457778888887553 44433322   135677888888775 4554 344446667777888777763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.99  E-value=3.2e-09  Score=93.53  Aligned_cols=158  Identities=11%  Similarity=0.131  Sum_probs=103.9

Q ss_pred             CCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccc
Q 046857            4 GSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT   83 (439)
Q Consensus         4 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~   83 (439)
                      |+-+.|. -+.++++++. ++.+|..+          .+.+++|++++ .++..++....+..+++|++|+++++ .++.
T Consensus         6 P~~C~C~-~~~l~~s~n~-l~~iP~~~----------~~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~   71 (220)
T 2v70_A            6 PEKCRCE-GTTVDCSNQK-LNKIPEHI----------PQYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNN-KITD   71 (220)
T ss_dssp             CTTCEEE-TTEEECCSSC-CSSCCSCC----------CTTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSS-CCCE
T ss_pred             CCCCEEC-CCEeEeCCCC-cccCccCC----------CCCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCC-cCCE
Confidence            4444444 3578888764 55566542          34678999998 34444432233567899999999986 5666


Q ss_pred             ccc-CCcCccCccceeecCceeeecCcCchhhhhhh-hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEec
Q 046857           84 FSQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY-EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVD  161 (439)
Q Consensus        84 l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~  161 (439)
                      ++. .+..+++|++|++++|.+.          .++ ..+..+++|++|+++++. +..+.... +  ..+++|+.|+++
T Consensus        72 i~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~--~~l~~L~~L~L~  137 (220)
T 2v70_A           72 IEEGAFEGASGVNEILLTSNRLE----------NVQHKMFKGLESLKTLMLRSNR-ITCVGNDS-F--IGLSSVRLLSLY  137 (220)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCC----------CCCGGGGTTCSSCCEEECTTSC-CCCBCTTS-S--TTCTTCSEEECT
T ss_pred             ECHHHhCCCCCCCEEECCCCccC----------ccCHhHhcCCcCCCEEECCCCc-CCeECHhH-c--CCCccCCEEECC
Confidence            654 6788899999999885433          222 234568889999998665 54443222 1  357888888888


Q ss_pred             cccccccccchhHHhhccccceeeeccccc
Q 046857          162 YCTNMSSAIPANLLRCLNNLARLEVRNCDS  191 (439)
Q Consensus       162 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~  191 (439)
                      ++ .++...|.. +..+++|++|++++++.
T Consensus       138 ~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          138 DN-QITTVAPGA-FDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TS-CCCCBCTTT-TTTCTTCCEEECCSCCE
T ss_pred             CC-cCCEECHHH-hcCCCCCCEEEecCcCC
Confidence            85 566543443 77788888888887643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.94  E-value=5e-09  Score=92.21  Aligned_cols=130  Identities=9%  Similarity=0.121  Sum_probs=74.1

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE  120 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~  120 (439)
                      ++|+.|++++ .++..++. ..+..+++|++|+++++ .+..+ |..+..+++|++|++++|.+.          .++..
T Consensus        32 ~~l~~L~l~~-n~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~----------~l~~~   98 (220)
T 2v9t_B           32 ETITEIRLEQ-NTIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKIT----------ELPKS   98 (220)
T ss_dssp             TTCCEEECCS-SCCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCC----------CCCTT
T ss_pred             cCCCEEECCC-CcCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCC----------ccCHh
Confidence            5777777777 23333322 12556777888888775 34443 566777777777777774332          23322


Q ss_pred             -hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecccc
Q 046857          121 -MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCD  190 (439)
Q Consensus       121 -~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  190 (439)
                       +.++++|+.|+++++. +..+....   ...+++|+.|+++++ .++.. +...+..+++|++|++++++
T Consensus        99 ~f~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           99 LFEGLFSLQLLLLNANK-INCLRVDA---FQDLHNLNLLSLYDN-KLQTI-AKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             HccCCCCCCEEECCCCC-CCEeCHHH---cCCCCCCCEEECCCC-cCCEE-CHHHHhCCCCCCEEEeCCCC
Confidence             2356677777777544 44332221   124666777777664 34442 33335566667777766653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.93  E-value=3.6e-10  Score=107.62  Aligned_cols=70  Identities=9%  Similarity=-0.039  Sum_probs=43.5

Q ss_pred             CccceEeecCCCCceeccccCC-ccccccCCcceEEeecCC-------CcccccCCCccCCCcceEEEccCCCcccccCh
Q 046857          297 PQLRKLRLSGLHKVQHLWKEND-ESNKVFANLERLEISECS-------KLQKLVPPSWHLENLWGLQVSKCHGLINVLTL  368 (439)
Q Consensus       297 ~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~-------~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~  368 (439)
                      ++|+.|+++++ .++......+ .....+++|++|++++|.       .+..++..+..+++|+.|++++++ +....+.
T Consensus       225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~~~~  302 (362)
T 3goz_A          225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPSHSI  302 (362)
T ss_dssp             TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGGGCH
T ss_pred             CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCcchH
Confidence            47888888775 3444322110 111267789999998875       133455667788899999998854 5544333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.92  E-value=1.2e-09  Score=91.73  Aligned_cols=130  Identities=18%  Similarity=0.218  Sum_probs=82.1

Q ss_pred             ccccceeecccccccc--ccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857           41 FSNLKVLILDYLPRLT--SFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY  118 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  118 (439)
                      .++|++|+++++. +.  .++  ..+..+++|++|++++|. ++.+ ..++.+++|++|++++|.+...         +|
T Consensus        23 ~~~L~~L~l~~n~-l~~~~i~--~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~---------~~   88 (168)
T 2ell_A           23 PAAVRELVLDNCK-SNDGKIE--GLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGG---------LD   88 (168)
T ss_dssp             TTSCSEEECCSCB-CBTTBCS--SCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSC---------CC
T ss_pred             cccCCEEECCCCC-CChhhHH--HHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchH---------HH
Confidence            4667777777732 22  222  224567777777777764 5555 5567777777777777443321         23


Q ss_pred             hhhcCCCCccEEEccCCCCceeecC-CCCCCcCccCCccEEEeccccccccccch---hHHhhccccceeeecccc
Q 046857          119 EEMIGFRDIQYLQLSHFPRLKEIWH-GQALPVRFFNYLAELEVDYCTNMSSAIPA---NLLRCLNNLARLEVRNCD  190 (439)
Q Consensus       119 ~~~~~~~~L~~L~l~~~~~l~~i~~-~~~l~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~L~~L~l~~~~  190 (439)
                      ..+..+++|+.|+++++. +..++. ..   ...+++|+.|+++++ .++.. +.   ..+..+++|++|++++|.
T Consensus        89 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---l~~l~~L~~L~l~~N-~l~~~-~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGNK-LKDISTLEP---LKKLECLKSLDLFNC-EVTNL-NDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             HHHHHCTTCCEEECBSSS-CCSSGGGGG---GSSCSCCCEEECCSS-GGGTS-TTHHHHHHTTCSSCCEETTEETT
T ss_pred             HHHhhCCCCCEEeccCCc-cCcchhHHH---HhcCCCCCEEEeeCC-cCcch-HHHHHHHHHhCccCcEecCCCCC
Confidence            333357788888888664 554431 11   135788999999887 45553 43   357889999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.90  E-value=1.3e-09  Score=89.66  Aligned_cols=128  Identities=19%  Similarity=0.196  Sum_probs=79.6

Q ss_pred             ccccceeecccccccc--ccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857           41 FSNLKVLILDYLPRLT--SFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY  118 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  118 (439)
                      .++|+.|+++++. +.  .++  ..+..+++|++|++++| .++.+ ..++.+++|++|++++|.+..         .+|
T Consensus        16 ~~~l~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~---------~~~   81 (149)
T 2je0_A           16 PSDVKELVLDNSR-SNEGKLE--GLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSG---------GLE   81 (149)
T ss_dssp             GGGCSEEECTTCB-CBTTBCC--SCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCS---------CTH
T ss_pred             CccCeEEEccCCc-CChhHHH--HHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccc---------hHH
Confidence            4567777777632 22  222  22456777777777775 45555 556677777777777743221         134


Q ss_pred             hhhcCCCCccEEEccCCCCceeec--CCCCCCcCccCCccEEEeccccccccccc--hhHHhhccccceeeecc
Q 046857          119 EEMIGFRDIQYLQLSHFPRLKEIW--HGQALPVRFFNYLAELEVDYCTNMSSAIP--ANLLRCLNNLARLEVRN  188 (439)
Q Consensus       119 ~~~~~~~~L~~L~l~~~~~l~~i~--~~~~l~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~  188 (439)
                      ..+..+++|+.|+++++. +..++  ...    ..+++|++|+++++ .+++..+  ...+..+++|++|++++
T Consensus        82 ~~~~~l~~L~~L~ls~N~-i~~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSGNK-IKDLSTIEPL----KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHHCTTCCEEECTTSC-CCSHHHHGGG----GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHhhhCCCCCEEECCCCc-CCChHHHHHH----hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            444457788888888665 44432  211    36788999999887 4655333  14588899999998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.88  E-value=7.4e-09  Score=98.46  Aligned_cols=152  Identities=16%  Similarity=0.073  Sum_probs=75.4

Q ss_pred             cccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeecccccccc
Q 046857          213 PRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLF  290 (439)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~  290 (439)
                      +.++.|+++++ .++.++.... ...+++|+.|++.++ .+..+++..+ ..+++|+.|  +.+.+..+.+         
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~~~~-~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~---------  105 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRAEWT-PTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSNHLHTLDE---------  105 (361)
T ss_dssp             TTCSEEECCSS-CCCEECTTSS-SSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCCEECT---------
T ss_pred             CCCCEEECCCC-CCCccChhhh-hhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCCcCCcCCH---------
Confidence            67888999886 4555544331 126788999999884 5666654322 345555555  4444444321         


Q ss_pred             ccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC----ccCCCcceEEEccCCCccccc
Q 046857          291 DEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS----WHLENLWGLQVSKCHGLINVL  366 (439)
Q Consensus       291 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~l~  366 (439)
                      .....+++|+.|+++++ .+..+....+.   .+++|++|+++++ .++.+|...    ..+++|+.|++++ ++++.+ 
T Consensus       106 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l-  178 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNN-HIVVVDRNAFE---DMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKL-  178 (361)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS-SCCCCC-
T ss_pred             HHhCCCcCCCEEECCCC-cccEECHHHhC---CcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC-CCCCcc-
Confidence            11223455555555553 23333322222   4555555555554 333444332    2455555555554 235544 


Q ss_pred             ChhHHhhccc--cceEEEcc
Q 046857          367 TLSASKNLVN--LGRMKIVD  384 (439)
Q Consensus       367 p~~~~~~l~~--L~~L~l~~  384 (439)
                      |...+..+++  ++.|++.+
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCS
T ss_pred             CHHHhhhccHhhcceEEecC
Confidence            3333344443  24455544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.88  E-value=4.9e-09  Score=86.13  Aligned_cols=105  Identities=12%  Similarity=0.074  Sum_probs=53.4

Q ss_pred             CCCccEEeeccCCCcc--ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee-ecC
Q 046857           67 FPSLERVSMTRCPNMK--TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE-IWH  143 (439)
Q Consensus        67 l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-i~~  143 (439)
                      .++|++|++++|. +.  .+|..+..+++|++|++++|.+...           ..+..+++|+.|+++++. +.. ++.
T Consensus        16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~Ls~n~-i~~~~~~   82 (149)
T 2je0_A           16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI-----------ANLPKLNKLKKLELSDNR-VSGGLEV   82 (149)
T ss_dssp             GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC-----------TTCCCCTTCCEEECCSSC-CCSCTHH
T ss_pred             CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc-----------hhhhcCCCCCEEECCCCc-ccchHHH
Confidence            3556666666653 33  5555556666666666666433221           223345666666666544 222 221


Q ss_pred             CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      ..    ..+++|++|+++++. +++......+..+++|++|++++|
T Consensus        83 ~~----~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           83 LA----EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             HH----HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             Hh----hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence            11    135666666666653 443211122555666666666655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.87  E-value=8.6e-09  Score=91.31  Aligned_cols=149  Identities=13%  Similarity=0.097  Sum_probs=99.2

Q ss_pred             CceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC-CcC
Q 046857           12 LVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG-IVS   90 (439)
Q Consensus        12 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~   90 (439)
                      -+.++.+++ .+..+|..          ..++|++|++++ .++..+.. ..+..+++|++|+++++ .++.+|.. +..
T Consensus        21 ~~~v~c~~~-~l~~ip~~----------~~~~L~~L~Ls~-n~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~   86 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAG----------IPTNAQILYLHD-NQITKLEP-GVFDSLINLKELYLGSN-QLGALPVGVFDS   86 (229)
T ss_dssp             TTEEECTTS-CCSSCCSC----------CCTTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             CCEeEccCC-CcCccCCC----------CCCCCCEEEcCC-CccCccCH-HHhhCccCCcEEECCCC-CCCCcChhhccc
Confidence            345555543 35555543          246888999988 23333321 22567888999999886 46766644 577


Q ss_pred             ccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc
Q 046857           91 TPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA  169 (439)
Q Consensus        91 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~  169 (439)
                      +++|++|++++|.+.          .++.. +..+++|+.|+++++. +..++...    ..+++|+.|+++++ .++. 
T Consensus        87 l~~L~~L~Ls~N~l~----------~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~L~~N-~l~~-  149 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLT----------VLPSAVFDRLVHLKELFMCCNK-LTELPRGI----ERLTHLTHLALDQN-QLKS-  149 (229)
T ss_dssp             CTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSC-CCSCCTTG----GGCTTCSEEECCSS-CCCC-
T ss_pred             CCCcCEEECCCCcCC----------ccChhHhCcchhhCeEeccCCc-ccccCccc----ccCCCCCEEECCCC-cCCc-
Confidence            889999999885433          23222 3468889999998654 65655443    46788999999886 5665 


Q ss_pred             cchhHHhhccccceeeeccccc
Q 046857          170 IPANLLRCLNNLARLEVRNCDS  191 (439)
Q Consensus       170 ~~~~~~~~l~~L~~L~l~~~~~  191 (439)
                      ++...+..+++|++|++.+++.
T Consensus       150 ~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          150 IPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCB
T ss_pred             cCHHHHhCCCCCCEEEeeCCCc
Confidence            4545577888999999987653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.85  E-value=2.1e-08  Score=100.50  Aligned_cols=138  Identities=18%  Similarity=0.190  Sum_probs=71.8

Q ss_pred             ccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhc
Q 046857           43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI  122 (439)
Q Consensus        43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~  122 (439)
                      +|+.|+++++ ++..++..    -+++|++|++++| .++.+|   ..+++|++|++++|.+.          .+|. +.
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~----l~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~----------~ip~-l~  119 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDN----LPPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLS----------TLPE-LP  119 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSC----CCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS----------CCCC-CC
T ss_pred             CccEEEeCCC-CCCccCHh----HcCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCC----------Ccch-hh
Confidence            6667777662 33333221    1366777777764 455666   33667777777663322          2222 21


Q ss_pred             CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccc
Q 046857          123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELN  202 (439)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  202 (439)
                      .  +|+.|+++++. +..+      |. .+++|+.|+++++ .++. +|.    .+++|++|++++| .+..++.     
T Consensus       120 ~--~L~~L~Ls~N~-l~~l------p~-~l~~L~~L~Ls~N-~l~~-lp~----~l~~L~~L~Ls~N-~L~~lp~-----  177 (571)
T 3cvr_A          120 A--SLKHLDVDNNQ-LTML------PE-LPALLEYINADNN-QLTM-LPE----LPTSLEVLSVRNN-QLTFLPE-----  177 (571)
T ss_dssp             T--TCCEEECCSSC-CSCC------CC-CCTTCCEEECCSS-CCSC-CCC----CCTTCCEEECCSS-CCSCCCC-----
T ss_pred             c--CCCEEECCCCc-CCCC------CC-cCccccEEeCCCC-ccCc-CCC----cCCCcCEEECCCC-CCCCcch-----
Confidence            1  66777776543 3332      22 3566777777664 3443 343    3566666766665 2333222     


Q ss_pred             cccCcccccccccceEecCCccccccccc
Q 046857          203 ADKEHIGPLFPRLFSLTLIDLPKLKRFCN  231 (439)
Q Consensus       203 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  231 (439)
                              +.++|+.|+++++ .++.++.
T Consensus       178 --------l~~~L~~L~Ls~N-~L~~lp~  197 (571)
T 3cvr_A          178 --------LPESLEALDVSTN-LLESLPA  197 (571)
T ss_dssp             --------CCTTCCEEECCSS-CCSSCCC
T ss_pred             --------hhCCCCEEECcCC-CCCchhh
Confidence                    0156666666665 3444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=1.1e-10  Score=117.55  Aligned_cols=36  Identities=11%  Similarity=0.092  Sum_probs=23.5

Q ss_pred             CCccccCceEEEccccccceeccccccccccccccccccceeecc
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILD   50 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~   50 (439)
                      +..++.|+.|+|+++. ++.+|..++        .+++|+.|+++
T Consensus       345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~--------~l~~L~~L~l~  380 (567)
T 1dce_A          345 SATDEQLFRCELSVEK-STVLQSELE--------SCKELQELEPE  380 (567)
T ss_dssp             CSTTTTSSSCCCCHHH-HHHHHHHHH--------HHHHHHHHCTT
T ss_pred             cccCccceeccCChhh-HHhhHHHHH--------HHHHHHHhccc
Confidence            4567888888888875 566776655        34455555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.85  E-value=1.5e-09  Score=91.97  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchh---HHhhccccceeeecccc
Q 046857          123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPAN---LLRCLNNLARLEVRNCD  190 (439)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~L~~L~l~~~~  190 (439)
                      .+++|+.|+++++. +..++...  ....+++|+.|++++++ ++. .|..   .+..+++|+.|+++++.
T Consensus        86 ~l~~L~~L~L~~N~-i~~~~~~~--~l~~l~~L~~L~l~~N~-i~~-~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           86 ALPDLTELILTNNS-LVELGDLD--PLASLKSLTYLCILRNP-VTN-KKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HCTTCCEEECCSCC-CCCGGGGG--GGGGCTTCCEEECCSSG-GGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCCCEEECCCCc-CCcchhhH--hhhcCCCCCEEEecCCC-CCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence            35566666666443 34333200  01356777788877763 443 3433   47778899999888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.84  E-value=1.4e-08  Score=90.04  Aligned_cols=147  Identities=14%  Similarity=0.082  Sum_probs=95.5

Q ss_pred             ceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhh-hc
Q 046857           45 KVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MI  122 (439)
Q Consensus        45 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~  122 (439)
                      +.++.++ .++..++.    ...++|++|+++++. +..+ |..+..+++|++|+++++.+          +.++.. +.
T Consensus        22 ~~v~c~~-~~l~~ip~----~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l----------~~i~~~~~~   85 (229)
T 3e6j_A           22 TTVDCRS-KRHASVPA----GIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQL----------GALPVGVFD   85 (229)
T ss_dssp             TEEECTT-SCCSSCCS----CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC----------CCCCTTTTT
T ss_pred             CEeEccC-CCcCccCC----CCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCC----------CCcChhhcc
Confidence            3455554 23344432    234889999999864 4544 66678889999999988443          333322 34


Q ss_pred             CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccc
Q 046857          123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELN  202 (439)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  202 (439)
                      .+++|+.|+++++. +..++...   ...+++|+.|+++++ .++. +|.. +..+++|++|+++++ .+..++. .   
T Consensus        86 ~l~~L~~L~Ls~N~-l~~l~~~~---~~~l~~L~~L~Ls~N-~l~~-lp~~-~~~l~~L~~L~L~~N-~l~~~~~-~---  153 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQ-LTVLPSAV---FDRLVHLKELFMCCN-KLTE-LPRG-IERLTHLTHLALDQN-QLKSIPH-G---  153 (229)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCS-CCTT-GGGCTTCSEEECCSS-CCCCCCT-T---
T ss_pred             cCCCcCEEECCCCc-CCccChhH---hCcchhhCeEeccCC-cccc-cCcc-cccCCCCCEEECCCC-cCCccCH-H---
Confidence            68889999998664 65554432   135788999999886 4554 5665 678899999999875 4544432 1   


Q ss_pred             cccCcccccccccceEecCCcc
Q 046857          203 ADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       203 ~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                          .+..+ ++|+.|++.+++
T Consensus       154 ----~~~~l-~~L~~L~l~~N~  170 (229)
T 3e6j_A          154 ----AFDRL-SSLTHAYLFGNP  170 (229)
T ss_dssp             ----TTTTC-TTCCEEECTTSC
T ss_pred             ----HHhCC-CCCCEEEeeCCC
Confidence                11223 888999988764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.84  E-value=9.2e-09  Score=89.62  Aligned_cols=153  Identities=13%  Similarity=0.123  Sum_probs=105.7

Q ss_pred             ccccCceEEEccccccceeccc-cccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGH-VGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ   86 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~   86 (439)
                      ..++|++|++++|. +..++.. +.        .+++|++|++++ .++..++.. .+..+++|++|+++++ .+..++.
T Consensus        26 ~~~~l~~L~l~~n~-l~~~~~~~~~--------~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~   93 (208)
T 2o6s_A           26 IPAQTTYLDLETNS-LKSLPNGVFD--------ELTSLTQLYLGG-NKLQSLPNG-VFNKLTSLTYLNLSTN-QLQSLPN   93 (208)
T ss_dssp             CCTTCSEEECCSSC-CCCCCTTTTT--------TCTTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCCCcEEEcCCCc-cCcCChhhhc--------ccccCcEEECCC-CccCccChh-hcCCCCCcCEEECCCC-cCCccCH
Confidence            35689999999996 4444432 23        588999999999 344444321 2467899999999996 5666665


Q ss_pred             C-CcCccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857           87 G-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT  164 (439)
Q Consensus        87 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~  164 (439)
                      . +..+++|++|+++++.+.          .++.. +..+++|+.|+++++. +..++...   ...+++|++|++.++.
T Consensus        94 ~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           94 GVFDKLTQLKELALNTNQLQ----------SLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGV---FDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSCC
T ss_pred             hHhcCccCCCEEEcCCCcCc----------ccCHhHhccCCcCCEEECCCCc-cceeCHHH---hccCCCccEEEecCCC
Confidence            4 688999999999995433          23222 4568999999999764 55544432   1358999999999873


Q ss_pred             ccccccchhHHhhccccceeeeccccccchh
Q 046857          165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEM  195 (439)
Q Consensus       165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  195 (439)
                       +.        ..+++|+.|++..+.....+
T Consensus       160 -~~--------~~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          160 -WD--------CTCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             -BC--------CCTTTTHHHHHHHHHCTTTB
T ss_pred             -ee--------cCCCCHHHHHHHHHhCCcee
Confidence             22        22466777877765433333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.82  E-value=2.1e-08  Score=95.27  Aligned_cols=152  Identities=16%  Similarity=0.183  Sum_probs=92.8

Q ss_pred             ceEEEccccccceeccccccccccccccccccceeeccccccccccccccCcc-CCCCccEEeeccCCCccccc-cCCcC
Q 046857           13 VNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTL-EFPSLERVSMTRCPNMKTFS-QGIVS   90 (439)
Q Consensus        13 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~L~~L~l~~c~~l~~l~-~~~~~   90 (439)
                      +.+++.++ .+..+|..+          .+.++.|++++ .++..++... +. .+++|++|+++++ .+..++ ..+..
T Consensus        21 ~~l~c~~~-~l~~iP~~~----------~~~l~~L~Ls~-N~l~~l~~~~-~~~~l~~L~~L~L~~N-~i~~i~~~~~~~   86 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQSL----------PSYTALLDLSH-NNLSRLRAEW-TPTRLTNLHSLLLSHN-HLNFISSEAFVP   86 (361)
T ss_dssp             TEEECCSS-CCSSCCSSC----------CTTCSEEECCS-SCCCEECTTS-SSSCCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred             CEEEeCCC-CcCccCccC----------CCCCCEEECCC-CCCCccChhh-hhhcccccCEEECCCC-cCCccChhhccC
Confidence            45666554 355555432          34678888888 3444443221 33 6788888888885 566555 44777


Q ss_pred             ccCccceeecCceeeecCcCchhhhhhhh-hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc
Q 046857           91 TPKLHEVQEEGELCRWEGNLNSTIQKCYE-EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA  169 (439)
Q Consensus        91 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~  169 (439)
                      +++|++|++++|.+.          .++. .+..+++|+.|+++++. +..+....   ...+++|+.|+++++ .++. 
T Consensus        87 l~~L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~---~~~l~~L~~L~L~~N-~l~~-  150 (361)
T 2xot_A           87 VPNLRYLDLSSNHLH----------TLDEFLFSDLQALEVLLLYNNH-IVVVDRNA---FEDMAQLQKLYLSQN-QISR-  150 (361)
T ss_dssp             CTTCCEEECCSSCCC----------EECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCS-
T ss_pred             CCCCCEEECCCCcCC----------cCCHHHhCCCcCCCEEECCCCc-ccEECHHH---hCCcccCCEEECCCC-cCCe-
Confidence            888888888884433          2222 24467888888888655 55543322   135788888888775 4554 


Q ss_pred             cchhHH---hhccccceeeeccccccchh
Q 046857          170 IPANLL---RCLNNLARLEVRNCDSLEEM  195 (439)
Q Consensus       170 ~~~~~~---~~l~~L~~L~l~~~~~l~~~  195 (439)
                      +|...+   ..+++|++|+++++ .+..+
T Consensus       151 l~~~~~~~~~~l~~L~~L~L~~N-~l~~l  178 (361)
T 2xot_A          151 FPVELIKDGNKLPKLMLLDLSSN-KLKKL  178 (361)
T ss_dssp             CCGGGTC----CTTCCEEECCSS-CCCCC
T ss_pred             eCHHHhcCcccCCcCCEEECCCC-CCCcc
Confidence            455544   56788888888875 44443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.81  E-value=8.3e-09  Score=86.60  Aligned_cols=134  Identities=13%  Similarity=0.105  Sum_probs=84.3

Q ss_pred             CCCCccEEeeccCCCcc--ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee-ec
Q 046857           66 EFPSLERVSMTRCPNMK--TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE-IW  142 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-i~  142 (439)
                      ..++|++|++++|. +.  .+|..+..+++|++|++++|.+...           ..+..+++|+.|+++++. +.. ++
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~   88 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV-----------SNLPKLPKLKKLELSENR-IFGGLD   88 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC-----------SSCCCCSSCCEEEEESCC-CCSCCC
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh-----------hhhccCCCCCEEECcCCc-CchHHH
Confidence            35778888888864 55  6777778888888888888553322           234467888888888665 332 22


Q ss_pred             CCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCC
Q 046857          143 HGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLID  222 (439)
Q Consensus       143 ~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  222 (439)
                      ...    ..+++|+.|+++++ .+++......+..+++|++|+++++. +..++...     ...+..+ ++|+.|++.+
T Consensus        89 ~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~-----~~~~~~l-~~L~~L~l~~  156 (168)
T 2ell_A           89 MLA----EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYR-----ESVFKLL-PQLTYLDGYD  156 (168)
T ss_dssp             HHH----HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHH-----HHHHTTC-SSCCEETTEE
T ss_pred             HHH----hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHH-----HHHHHhC-ccCcEecCCC
Confidence            211    24788888888886 45553221346778888888888763 33332200     0011123 8888888888


Q ss_pred             cc
Q 046857          223 LP  224 (439)
Q Consensus       223 ~~  224 (439)
                      +.
T Consensus       157 n~  158 (168)
T 2ell_A          157 RE  158 (168)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.80  E-value=4.5e-08  Score=86.03  Aligned_cols=130  Identities=18%  Similarity=0.132  Sum_probs=79.8

Q ss_pred             cccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeecccccccccc
Q 046857          213 PRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDE  292 (439)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~  292 (439)
                      ++++.|+++++ .++.++...  ...+++|+.|++.++ .+..+.+.                                .
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~--~~~l~~L~~L~Ls~N-~i~~~~~~--------------------------------~   75 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGA--FSPYKKLRRIDLSNN-QISELAPD--------------------------------A   75 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTS--STTCTTCCEEECCSS-CCCEECTT--------------------------------T
T ss_pred             cCCCEEECCCC-cCCCcCHhH--hhCCCCCCEEECCCC-cCCCcCHH--------------------------------H
Confidence            56777777665 344333211  125566777776663 33333222                                2


Q ss_pred             ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccc-cCCCccCCCcceEEEccCCCcccccChhHH
Q 046857          293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKL-VPPSWHLENLWGLQVSKCHGLINVLTLSAS  371 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~  371 (439)
                      ...+++|++|+++++ .++.++...+.   .+++|++|+++++. ++.+ +..+..+++|++|+++++ +++.+ +...+
T Consensus        76 ~~~l~~L~~L~Ls~N-~l~~l~~~~f~---~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~  148 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGN-KITELPKSLFE---GLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTI-AKGTF  148 (220)
T ss_dssp             TTTCSSCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTT
T ss_pred             hhCCcCCCEEECCCC-cCCccCHhHcc---CCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEE-CHHHH
Confidence            335678888888774 46655544333   67788888888764 4444 455667888888888874 57776 43345


Q ss_pred             hhccccceEEEccc
Q 046857          372 KNLVNLGRMKIVDC  385 (439)
Q Consensus       372 ~~l~~L~~L~l~~c  385 (439)
                      ..+++|+.|++.++
T Consensus       149 ~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          149 SPLRAIQTMHLAQN  162 (220)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             hCCCCCCEEEeCCC
Confidence            66788888888775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.80  E-value=3.9e-08  Score=86.46  Aligned_cols=132  Identities=11%  Similarity=0.051  Sum_probs=79.1

Q ss_pred             cccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeecccccccccc
Q 046857          213 PRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDE  292 (439)
Q Consensus       213 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~  292 (439)
                      +.++.|+++++ .++.+.... ....+++|+.|++.++ .+..+++.                                .
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~-~~~~l~~L~~L~L~~N-~i~~i~~~--------------------------------~   76 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATG-IFKKLPQLRKINFSNN-KITDIEEG--------------------------------A   76 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCC-CGGGCTTCCEEECCSS-CCCEECTT--------------------------------T
T ss_pred             CCCCEEEcCCC-cCCccCchh-hhccCCCCCEEECCCC-cCCEECHH--------------------------------H
Confidence            45677777765 343332111 1235667777777663 34444322                                2


Q ss_pred             ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857          293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK  372 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~  372 (439)
                      ...+++|+.|+++++ .++.+....+.   .+++|++|+++++..-...+..+..+++|++|+++++ +++.+.|. .+.
T Consensus        77 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~  150 (220)
T 2v70_A           77 FEGASGVNEILLTSN-RLENVQHKMFK---GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPG-AFD  150 (220)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCGGGGT---TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTT-TTT
T ss_pred             hCCCCCCCEEECCCC-ccCccCHhHhc---CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHH-Hhc
Confidence            335667778887774 34544433233   6778888888776433333555667888888888874 57776444 356


Q ss_pred             hccccceEEEccc
Q 046857          373 NLVNLGRMKIVDC  385 (439)
Q Consensus       373 ~l~~L~~L~l~~c  385 (439)
                      .+++|+.|++.++
T Consensus       151 ~l~~L~~L~L~~N  163 (220)
T 2v70_A          151 TLHSLSTLNLLAN  163 (220)
T ss_dssp             TCTTCCEEECCSC
T ss_pred             CCCCCCEEEecCc
Confidence            7788888888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=5.9e-08  Score=90.91  Aligned_cols=100  Identities=11%  Similarity=-0.003  Sum_probs=46.2

Q ss_pred             CccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcc-eEEEccCCCcccccChhHHhhc
Q 046857          297 PQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLW-GLQVSKCHGLINVLTLSASKNL  374 (439)
Q Consensus       297 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~-~L~l~~c~~l~~l~p~~~~~~l  374 (439)
                      ++|+.+++.++ .++.++...+.   .+++|+++++.+.  ++.++... ..+++|+ .+++.+  .++.+ +...+..+
T Consensus       226 ~~L~~l~L~~n-~i~~I~~~aF~---~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I-~~~aF~~c  296 (329)
T 3sb4_A          226 PNLVSLDISKT-NATTIPDFTFA---QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAI-EFGAFMGC  296 (329)
T ss_dssp             TTCCEEECTTB-CCCEECTTTTT---TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEE-CTTTTTTC
T ss_pred             CCCeEEECCCC-CcceecHhhhh---CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEE-chhhhhCC
Confidence            44555555432 24444444333   4455555555442  44444332 3455555 555544  35544 33334455


Q ss_pred             cccceEEEcccccchhhccccccccCCCceEeccccEEe
Q 046857          375 VNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLE  413 (439)
Q Consensus       375 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~  413 (439)
                      ++|+.+++.+. .++.+...       .+.++++|++++
T Consensus       297 ~~L~~l~l~~n-~i~~I~~~-------aF~~~~~L~~ly  327 (329)
T 3sb4_A          297 DNLRYVLATGD-KITTLGDE-------LFGNGVPSKLIY  327 (329)
T ss_dssp             TTEEEEEECSS-CCCEECTT-------TTCTTCCCCEEE
T ss_pred             ccCCEEEeCCC-ccCccchh-------hhcCCcchhhhc
Confidence            55555555433 34444322       344455555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=1.5e-08  Score=95.08  Aligned_cols=78  Identities=13%  Similarity=0.031  Sum_probs=47.1

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcc-eEEeecCCCcccccC-CCccCCCcceEEEccCCCcccccChhHHh
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLE-RLEISECSKLQKLVP-PSWHLENLWGLQVSKCHGLINVLTLSASK  372 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~p~~~~~  372 (439)
                      .+++|+.+.+.+  +++.++...+.   .+++|+ .+.+.+  .++.++. ....|++|+.+++.. +.++.+ +...+.
T Consensus       248 ~~~~L~~l~l~~--ni~~I~~~aF~---~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I-~~~aF~  318 (329)
T 3sb4_A          248 QKKYLLKIKLPH--NLKTIGQRVFS---NCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTL-GDELFG  318 (329)
T ss_dssp             TCTTCCEEECCT--TCCEECTTTTT---TCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEE-CTTTTC
T ss_pred             CCCCCCEEECCc--ccceehHHHhh---CChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCcc-chhhhc
Confidence            445677777765  26666555454   666777 777765  4555553 334677777777755 456665 444455


Q ss_pred             hccccceEE
Q 046857          373 NLVNLGRMK  381 (439)
Q Consensus       373 ~l~~L~~L~  381 (439)
                      .+++|+.++
T Consensus       319 ~~~~L~~ly  327 (329)
T 3sb4_A          319 NGVPSKLIY  327 (329)
T ss_dssp             TTCCCCEEE
T ss_pred             CCcchhhhc
Confidence            566666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.71  E-value=2.1e-08  Score=84.80  Aligned_cols=37  Identities=19%  Similarity=0.184  Sum_probs=17.9

Q ss_pred             ccCCccEEEeccccccccccch-hHHhhccccceeeeccc
Q 046857          151 FFNYLAELEVDYCTNMSSAIPA-NLLRCLNNLARLEVRNC  189 (439)
Q Consensus       151 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~~  189 (439)
                      .+++|+.|+++++ .+++ +|. ..+..+++|++|+++++
T Consensus        86 ~l~~L~~L~L~~N-~i~~-~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           86 ALPDLTELILTNN-SLVE-LGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             HCTTCCEEECCSC-CCCC-GGGGGGGGGCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCC-cCCc-chhhHhhhcCCCCCEEEecCC
Confidence            3455555555554 2333 222 12445555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.65  E-value=4.7e-09  Score=105.61  Aligned_cols=187  Identities=16%  Similarity=0.135  Sum_probs=119.8

Q ss_pred             CCccccCceEEEccccccceecccc-----ccccccccccccccceee-cccccccccccc---c-cCcc--CCCCccEE
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHV-----GEEVKENRIAFSNLKVLI-LDYLPRLTSFCL---E-NYTL--EFPSLERV   73 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~-----~~~~~~~~~~~~~L~~L~-l~~~~~l~~~~~---~-~~~~--~l~~L~~L   73 (439)
                      +++|++|++|++++|..+..++...     ....++.+..+++|+.|+ ++. ..+.++..   . ..+.  ....|+.|
T Consensus       368 i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L  446 (567)
T 1dce_A          368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLKMEYADVRVL  446 (567)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccchhhhhhhhcccccccCccCceEE
Confidence            6778999999997775322221110     001112223577788877 332 21111110   0 0011  12369999


Q ss_pred             eeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccC
Q 046857           74 SMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFN  153 (439)
Q Consensus        74 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~  153 (439)
                      +++++ .++.+|. ++.+++|+.|++++          +.+..+|..+..+++|+.|+++++. +..++ ..    ..++
T Consensus       447 ~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~----------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l----~~l~  508 (567)
T 1dce_A          447 HLAHK-DLTVLCH-LEQLLLVTHLDLSH----------NRLRALPPALAALRCLEVLQASDNA-LENVD-GV----ANLP  508 (567)
T ss_dssp             ECTTS-CCSSCCC-GGGGTTCCEEECCS----------SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GG----TTCS
T ss_pred             EecCC-CCCCCcC-ccccccCcEeecCc----------ccccccchhhhcCCCCCEEECCCCC-CCCCc-cc----CCCC
Confidence            99996 6788887 89999999999999          3444677778889999999999765 66565 22    4689


Q ss_pred             CccEEEecccccccccc-chhHHhhccccceeeeccccccchhccccccccccCcccccccccceEec
Q 046857          154 YLAELEVDYCTNMSSAI-PANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTL  220 (439)
Q Consensus       154 ~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  220 (439)
                      +|+.|+++++ .+++.. |.. +..+++|+.|+++++. +...++..      ......+|+|+.|++
T Consensus       509 ~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~-l~~~~~~~------~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          509 RLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNS-LCQEEGIQ------ERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSG-GGGSSSCT------THHHHHCTTCSEEEC
T ss_pred             CCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCc-CCCCccHH------HHHHHHCcccCccCC
Confidence            9999999986 566644 555 8889999999999874 44333210      011112489998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.63  E-value=1.5e-07  Score=80.75  Aligned_cols=77  Identities=13%  Similarity=0.200  Sum_probs=43.2

Q ss_pred             ceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCc
Q 046857           13 VNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVST   91 (439)
Q Consensus        13 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l   91 (439)
                      +.++++++. ++.+|...          .+++++|++++. ++..++....+..+++|++|+++++ .++.+ |..+..+
T Consensus        11 ~~l~~s~~~-l~~ip~~~----------~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l   77 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDI----------PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGA   77 (192)
T ss_dssp             TEEECTTSC-CSSCCSCC----------CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTC
T ss_pred             CEEEcCCCC-cCcCccCC----------CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCc
Confidence            666766653 45555432          346777777772 3333322112456777777777775 34433 5556666


Q ss_pred             cCccceeecCc
Q 046857           92 PKLHEVQEEGE  102 (439)
Q Consensus        92 ~~L~~L~l~~~  102 (439)
                      ++|++|++++|
T Consensus        78 ~~L~~L~Ls~N   88 (192)
T 1w8a_A           78 SHIQELQLGEN   88 (192)
T ss_dssp             TTCCEEECCSC
T ss_pred             ccCCEEECCCC
Confidence            66666666663

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.60  E-value=1.6e-08  Score=104.93  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=54.6

Q ss_pred             ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857           64 TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH  143 (439)
Q Consensus        64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~  143 (439)
                      +..+++|+.|++++| .+..+|..+..+++|++|++++|          .+..+|..+..+++|+.|+|+++. +..++.
T Consensus       220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N----------~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~  287 (727)
T 4b8c_D          220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN----------SLTELPAEIKNLSNLRVLDLSHNR-LTSLPA  287 (727)
T ss_dssp             --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS----------CCSCCCGGGGGGTTCCEEECTTSC-CSSCCS
T ss_pred             hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC----------cCcccChhhhCCCCCCEEeCcCCc-CCccCh
Confidence            344555666666654 34455555555666666666552          222344444555566666665443 334433


Q ss_pred             CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      ..    ..+++|+.|+++++ .++. +|.. +..+++|++|+++++
T Consensus       288 ~~----~~l~~L~~L~L~~N-~l~~-lp~~-~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          288 EL----GSCFQLKYFYFFDN-MVTT-LPWE-FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SG----GGGTTCSEEECCSS-CCCC-CCSS-TTSCTTCCCEECTTS
T ss_pred             hh----cCCCCCCEEECCCC-CCCc-cChh-hhcCCCccEEeCCCC
Confidence            22    34555666666554 3433 3444 555566666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.59  E-value=2.4e-08  Score=83.37  Aligned_cols=88  Identities=17%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             CcceEEeecCCCccc-ccCCCccCCCcceEEEccCCCcccccChhHHh---hccccceEEEcccccchhhccccccccCC
Q 046857          326 NLERLEISECSKLQK-LVPPSWHLENLWGLQVSKCHGLINVLTLSASK---NLVNLGRMKIVDCKMMEEIIQSQVGEETE  401 (439)
Q Consensus       326 ~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~---~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  401 (439)
                      .|++|++++|. +++ -...+..+++|++|++++|.++++..-..+..   ..++|+.|++++|+.+++...+       
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-------  133 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-------  133 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-------
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-------
Confidence            45555555554 322 11223455666666666666555542221211   0235666666666555554332       


Q ss_pred             CceEeccccEEecCCCCCcc
Q 046857          402 DCIVFGKLRYLELDCLPSLT  421 (439)
Q Consensus       402 ~~~~l~~L~~l~l~~c~~l~  421 (439)
                      .+.++++|++|++++||+++
T Consensus       134 ~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCC
T ss_pred             HHhcCCCCCEEECCCCCCCC
Confidence            34445666666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.54  E-value=2.8e-07  Score=79.11  Aligned_cols=126  Identities=17%  Similarity=0.105  Sum_probs=82.3

Q ss_pred             ceeeccccccccccccccCccCCCCccEEeeccCCCccccccC--CcCccCccceeecCceeeecCcCchhhhhhhhhhc
Q 046857           45 KVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG--IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI  122 (439)
Q Consensus        45 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~  122 (439)
                      +++++++ .++.+++..    -.++|++|+++++ .++.++..  ++.+++|++|+++++.+...         .|..+.
T Consensus        11 ~~l~~s~-~~l~~ip~~----~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~   75 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRD----IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGI---------EPNAFE   75 (192)
T ss_dssp             TEEECTT-SCCSSCCSC----CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCB---------CTTTTT
T ss_pred             CEEEcCC-CCcCcCccC----CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCc---------CHhHcC
Confidence            5667776 334444321    2348999999985 56766653  77888999999888443321         134455


Q ss_pred             CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccc
Q 046857          123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDS  191 (439)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~  191 (439)
                      ++++|++|+++++. +..++...   ...+++|++|+++++ .++...|.. +..+++|++|+++++..
T Consensus        76 ~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           76 GASHIQELQLGENK-IKEISNKM---FLGLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TCTTCCEEECCSCC-CCEECSSS---STTCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCCB
T ss_pred             CcccCCEEECCCCc-CCccCHHH---hcCCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCCc
Confidence            67888888888655 55554332   135788888888875 566544443 67788888888887643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.53  E-value=1.1e-09  Score=94.79  Aligned_cols=106  Identities=12%  Similarity=0.075  Sum_probs=47.9

Q ss_pred             cCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCC
Q 046857           65 LEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHG  144 (439)
Q Consensus        65 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~  144 (439)
                      ..+++|++|++++| .++.+| .+..+++|++|++++|.+.          .+|..+..+++|+.|+++++. +..++. 
T Consensus        45 ~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~----------~l~~~~~~~~~L~~L~L~~N~-l~~l~~-  110 (198)
T 1ds9_A           45 STLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIK----------KIENLDAVADTLEELWISYNQ-IASLSG-  110 (198)
T ss_dssp             HHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEEC----------SCSSHHHHHHHCSEEEEEEEE-CCCHHH-
T ss_pred             hcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcc----------cccchhhcCCcCCEEECcCCc-CCcCCc-
Confidence            34555555555553 344444 4445555555555553322          111122223445555555442 333221 


Q ss_pred             CCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          145 QALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       145 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      .    ..+++|+.|+++++ .+++..+...+..+++|++|+++++
T Consensus       111 ~----~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          111 I----EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             H----HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             c----ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence            1    23555666666554 2333111123555666666666655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.52  E-value=3e-07  Score=78.98  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=16.7

Q ss_pred             cCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      +++|+.|+++++ .++. ++...+..+++|++|++.++
T Consensus       101 l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          101 LKSLRLLSLHGN-DISV-VPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CTTCCEEECCSS-CCCB-CCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCEEECCCC-CCCe-eChhhhhcCccccEEEeCCC
Confidence            455555555543 2332 23333444555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.46  E-value=1.8e-05  Score=75.82  Aligned_cols=80  Identities=14%  Similarity=0.190  Sum_probs=48.6

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhh
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKN  373 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~  373 (439)
                      ..++|+.+.+..  .++.+....+.   .+++|+.+.+.+  .++.+... ..+|.+|+.+.+..  .++.+ +...+..
T Consensus       295 ~~~~L~~i~l~~--~i~~I~~~aF~---~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I-~~~aF~~  364 (394)
T 4fs7_A          295 GCSSLTEVKLLD--SVKFIGEEAFE---SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKI-GANAFQG  364 (394)
T ss_dssp             TCTTCCEEEECT--TCCEECTTTTT---TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEE-CTTTBTT
T ss_pred             cccccccccccc--ccceechhhhc---CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEe-hHHHhhC
Confidence            345677776653  35555555444   567777777743  35555433 34677888887753  36665 4445566


Q ss_pred             ccccceEEEcc
Q 046857          374 LVNLGRMKIVD  384 (439)
Q Consensus       374 l~~L~~L~l~~  384 (439)
                      +++|+.+++..
T Consensus       365 C~~L~~i~lp~  375 (394)
T 4fs7_A          365 CINLKKVELPK  375 (394)
T ss_dssp             CTTCCEEEEEG
T ss_pred             CCCCCEEEECC
Confidence            77788777754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.40  E-value=2.1e-07  Score=96.55  Aligned_cols=114  Identities=11%  Similarity=0.060  Sum_probs=85.8

Q ss_pred             cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      .+++|+.|+|+++ ++..++.  .+..+++|++|++++| .+..+|..++.+++|++|++++|          .+..+|.
T Consensus       222 ~l~~L~~L~Ls~n-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N----------~l~~lp~  287 (727)
T 4b8c_D          222 DDQLWHALDLSNL-QIFNISA--NIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN----------RLTSLPA  287 (727)
T ss_dssp             CCCCCCEEECTTS-CCSCCCG--GGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS----------CCSSCCS
T ss_pred             cCCCCcEEECCCC-CCCCCCh--hhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC----------cCCccCh
Confidence            5789999999983 3344432  3668899999999996 56688988899999999999983          3445666


Q ss_pred             hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchh
Q 046857          120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPAN  173 (439)
Q Consensus       120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~  173 (439)
                      .+..+++|+.|+++++. +..++...    ..+++|+.|+++++ .++..+|..
T Consensus       288 ~~~~l~~L~~L~L~~N~-l~~lp~~~----~~l~~L~~L~L~~N-~l~~~~p~~  335 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNM-VTTLPWEF----GNLCNLQFLGVEGN-PLEKQFLKI  335 (727)
T ss_dssp             SGGGGTTCSEEECCSSC-CCCCCSST----TSCTTCCCEECTTS-CCCSHHHHH
T ss_pred             hhcCCCCCCEEECCCCC-CCccChhh----hcCCCccEEeCCCC-ccCCCChHH
Confidence            77788999999999764 66666543    56889999999886 466544544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.40  E-value=1.5e-06  Score=74.58  Aligned_cols=124  Identities=14%  Similarity=0.120  Sum_probs=88.7

Q ss_pred             ceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cCCcCc
Q 046857           13 VNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QGIVST   91 (439)
Q Consensus        13 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l   91 (439)
                      +.++++++. ++.+|..          ..++|++|++++ ..+..++  ..+..+++|++|+++++ .++.++ ..+..+
T Consensus        13 ~~l~~~~~~-l~~ip~~----------~~~~l~~L~L~~-n~i~~ip--~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l   77 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPKG----------IPRDVTELYLDG-NQFTLVP--KELSNYKHLTLIDLSNN-RISTLSNQSFSNM   77 (193)
T ss_dssp             TEEECTTSC-CSSCCSC----------CCTTCCEEECCS-SCCCSCC--GGGGGCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             CEEEcCCCC-CCcCCCC----------CCCCCCEEECCC-CcCchhH--HHhhcccCCCEEECCCC-cCCEeCHhHccCC
Confidence            567777654 6666653          246999999999 3445444  34778999999999996 566665 458889


Q ss_pred             cCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857           92 PKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT  164 (439)
Q Consensus        92 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~  164 (439)
                      ++|++|++++|.+....         +..+.++++|+.|+++++. +..++.+. +  ..+++|+.|++.+++
T Consensus        78 ~~L~~L~Ls~N~l~~i~---------~~~f~~l~~L~~L~L~~N~-l~~~~~~~-~--~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIP---------PRTFDGLKSLRLLSLHGND-ISVVPEGA-F--NDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCCEEECCSSCCCBCC---------TTTTTTCTTCCEEECCSSC-CCBCCTTT-T--TTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCccCEeC---------HHHhCCCCCCCEEECCCCC-CCeeChhh-h--hcCccccEEEeCCCC
Confidence            99999999995543222         1235578999999999765 66655443 1  358899999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.36  E-value=1.1e-06  Score=74.10  Aligned_cols=108  Identities=18%  Similarity=0.131  Sum_probs=59.5

Q ss_pred             cCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhc
Q 046857          296 FPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNL  374 (439)
Q Consensus       296 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l  374 (439)
                      +++|+.|+++++ .++.+....+.   .+++|++|+++++ .++.++.. +..+++|++|+++++ +++.+ +...+..+
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l   99 (177)
T 2o6r_A           27 PSSATRLELESN-KLQSLPHGVFD---KLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSL-PNGVFDKL   99 (177)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTC
T ss_pred             CCCCcEEEeCCC-cccEeCHHHhc---CcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-Ccccc-CHHHhhCC
Confidence            356666666664 34444333222   5566777776665 34455443 346667777777663 45555 33334556


Q ss_pred             cccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857          375 VNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP  418 (439)
Q Consensus       375 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~  418 (439)
                      ++|+.|+++++ .++.++..       .+..+++|++|++++++
T Consensus       100 ~~L~~L~l~~N-~l~~~~~~-------~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          100 TQLKELALDTN-QLKSVPDG-------IFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTCCEEECCSS-CCSCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred             cccCEEECcCC-cceEeCHH-------HhcCCcccCEEEecCCC
Confidence            66777777666 44444331       23445666666666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.32  E-value=7.1e-05  Score=71.74  Aligned_cols=237  Identities=11%  Similarity=0.118  Sum_probs=129.7

Q ss_pred             ccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-CCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857           43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM  121 (439)
Q Consensus        43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~  121 (439)
                      +|+.+.+..  ++..+.... +.. .+|+.+.+.+  .++.++. .+..+++|+.+++..+.+          ..++...
T Consensus       136 ~L~~i~l~~--~i~~I~~~a-F~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l----------~~I~~~a  199 (401)
T 4fdw_A          136 QIAKVVLNE--GLKSIGDMA-FFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKI----------TKLPAST  199 (401)
T ss_dssp             CCSEEECCT--TCCEECTTT-TTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCC----------SEECTTT
T ss_pred             CccEEEeCC--CccEECHHh-cCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcc----------eEechhh
Confidence            567766654  234433221 222 3688887775  4566653 356688888888876332          2333333


Q ss_pred             cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857          122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL  201 (439)
Q Consensus       122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  201 (439)
                      ..+.+|+++.+...  ++.|....   ...|++|+.+.+..  +++. ++...+.+ .+|+.+.+..  .+..+..    
T Consensus       200 F~~~~L~~l~lp~~--l~~I~~~a---F~~~~~L~~l~l~~--~l~~-I~~~aF~~-~~L~~i~lp~--~i~~I~~----  264 (401)
T 4fdw_A          200 FVYAGIEEVLLPVT--LKEIGSQA---FLKTSQLKTIEIPE--NVST-IGQEAFRE-SGITTVKLPN--GVTNIAS----  264 (401)
T ss_dssp             TTTCCCSEEECCTT--CCEECTTT---TTTCTTCCCEECCT--TCCE-ECTTTTTT-CCCSEEEEET--TCCEECT----
T ss_pred             EeecccCEEEeCCc--hheehhhH---hhCCCCCCEEecCC--CccC-cccccccc-CCccEEEeCC--CccEECh----
Confidence            33577888888632  56655443   23577888888865  4554 34444555 6788887743  3333321    


Q ss_pred             ccccCcccccccccceEecCCccc----ccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcc
Q 046857          202 NADKEHIGPLFPRLFSLTLIDLPK----LKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLE  277 (439)
Q Consensus       202 ~~~~~~~~~~~~~L~~L~l~~~~~----l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~  277 (439)
                          ..+..+ ++|+.+.+.+...    ...+...  ...+|++|+.+.+.+  .+..+....                 
T Consensus       265 ----~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~~--~i~~I~~~a-----------------  318 (401)
T 4fdw_A          265 ----RAFYYC-PELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIPE--SIRILGQGL-----------------  318 (401)
T ss_dssp             ----TTTTTC-TTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCCT--TCCEECTTT-----------------
T ss_pred             ----hHhhCC-CCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeCC--ceEEEhhhh-----------------
Confidence                111123 7788887755321    1122222  234778888888764  354443221                 


Q ss_pred             eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCC-CccCC-CcceEE
Q 046857          278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLE-NLWGLQ  355 (439)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~-~L~~L~  355 (439)
                                     ...+++|+.+.+..  +++.+....+.   .+ +|+++.+.+.. ...++.. ...++ .++.+.
T Consensus       319 ---------------F~~c~~L~~l~lp~--~l~~I~~~aF~---~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~  376 (401)
T 4fdw_A          319 ---------------LGGNRKVTQLTIPA--NVTQINFSAFN---NT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIR  376 (401)
T ss_dssp             ---------------TTTCCSCCEEEECT--TCCEECTTSSS---SS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEE
T ss_pred             ---------------hcCCCCccEEEECc--cccEEcHHhCC---CC-CCCEEEEcCCC-CcccccccccCCCCCccEEE
Confidence                           22345677777743  36666555444   55 78888887653 3333322 23443 566776


Q ss_pred             Ecc
Q 046857          356 VSK  358 (439)
Q Consensus       356 l~~  358 (439)
                      +-.
T Consensus       377 vp~  379 (401)
T 4fdw_A          377 VPA  379 (401)
T ss_dssp             ECG
T ss_pred             eCH
Confidence            643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.30  E-value=4.8e-05  Score=72.91  Aligned_cols=34  Identities=9%  Similarity=0.276  Sum_probs=14.4

Q ss_pred             ccCCccEEEeccccccccccchhHHhhccccceeeec
Q 046857          151 FFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVR  187 (439)
Q Consensus       151 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~  187 (439)
                      .|++|+.+++..+ +++. ++...+. ..+|+.+.+.
T Consensus       178 ~c~~L~~l~l~~n-~l~~-I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          178 YCYNLKKADLSKT-KITK-LPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             TCTTCCEEECTTS-CCSE-ECTTTTT-TCCCSEEECC
T ss_pred             CcccCCeeecCCC-cceE-echhhEe-ecccCEEEeC
Confidence            3455555555432 2332 2333233 3455555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.28  E-value=2.7e-06  Score=71.75  Aligned_cols=129  Identities=13%  Similarity=0.101  Sum_probs=89.4

Q ss_pred             cCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC-Cc
Q 046857           11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG-IV   89 (439)
Q Consensus        11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~   89 (439)
                      ..+.++++++. +..++..          .+++|++|++++ .++..++.. .+..+++|++|+++++ .+..++.. +.
T Consensus         8 ~~~~l~~~~~~-l~~~p~~----------~~~~l~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~   73 (177)
T 2o6r_A            8 SGTEIRCNSKG-LTSVPTG----------IPSSATRLELES-NKLQSLPHG-VFDKLTQLTKLSLSQN-QIQSLPDGVFD   73 (177)
T ss_dssp             ETTEEECCSSC-CSSCCTT----------CCTTCSEEECCS-SCCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTTTT
T ss_pred             CCCEEEecCCC-CccCCCC----------CCCCCcEEEeCC-CcccEeCHH-HhcCcccccEEECCCC-cceEeChhHcc
Confidence            34677777764 5555543          357999999999 334444321 2567899999999996 56777654 58


Q ss_pred             CccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccc
Q 046857           90 STPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSS  168 (439)
Q Consensus        90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~  168 (439)
                      .+++|++|+++++.+.          .++.. +..+++|+.|+++++. +..++...   ...+++|++|++.+++ +..
T Consensus        74 ~l~~L~~L~l~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~-~~~  138 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQ----------SLPNGVFDKLTQLKELALDTNQ-LKSVPDGI---FDRLTSLQKIWLHTNP-WDC  138 (177)
T ss_dssp             TCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSSC-BCC
T ss_pred             CCCccCEEECCCCCcc----------ccCHHHhhCCcccCEEECcCCc-ceEeCHHH---hcCCcccCEEEecCCC-eec
Confidence            8999999999995443          23322 4568999999999764 65555432   1358899999999874 443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.27  E-value=1.8e-08  Score=87.09  Aligned_cols=89  Identities=17%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             ccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEe
Q 046857           81 MKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEV  160 (439)
Q Consensus        81 l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l  160 (439)
                      ++.+|..++.+++|++|++++|.+..          +| .+..+++|+.|+++++. +..++...    ..+++|+.|++
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~----------l~-~~~~l~~L~~L~l~~n~-l~~l~~~~----~~~~~L~~L~L  100 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEK----------IS-SLSGMENLRILSLGRNL-IKKIENLD----AVADTLEELWI  100 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESC----------CC-CHHHHTTCCEEEEEEEE-ECSCSSHH----HHHHHCSEEEE
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcc----------cc-ccccCCCCCEEECCCCC-cccccchh----hcCCcCCEEEC
Confidence            34444455566666666666643221          22 23345666666666543 33322211    23456666666


Q ss_pred             ccccccccccchhHHhhccccceeeeccc
Q 046857          161 DYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       161 ~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      +++ .+++ +| . +..+++|++|+++++
T Consensus       101 ~~N-~l~~-l~-~-~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A          101 SYN-QIAS-LS-G-IEKLVNLRVLYMSNN  125 (198)
T ss_dssp             EEE-ECCC-HH-H-HHHHHHSSEEEESEE
T ss_pred             cCC-cCCc-CC-c-cccCCCCCEEECCCC
Confidence            665 3443 23 2 555666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.26  E-value=4.2e-07  Score=75.78  Aligned_cols=89  Identities=10%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             ccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccccc-CCCcc----CCCcceEEEccCCCcccccChhHHh
Q 046857          298 QLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLV-PPSWH----LENLWGLQVSKCHGLINVLTLSASK  372 (439)
Q Consensus       298 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~l~p~~~~~  372 (439)
                      +|+.|++++|. +++.....+.   .+++|++|++++|..+++-- ..+..    +++|++|++++|.++++..-. .+.
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~---~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHME---GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALH  136 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGT---TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGG
T ss_pred             eEeEEeCcCCC-ccHHHHHHhc---CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHh
Confidence            79999999986 6665544333   88999999999999887521 11222    458999999999999986333 345


Q ss_pred             hccccceEEEcccccchhh
Q 046857          373 NLVNLGRMKIVDCKMMEEI  391 (439)
Q Consensus       373 ~l~~L~~L~l~~c~~l~~~  391 (439)
                      .+++|+.|++++|+.+++.
T Consensus       137 ~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             GCTTCCEEEEESCTTCCCH
T ss_pred             cCCCCCEEECCCCCCCCch
Confidence            7899999999999888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.21  E-value=3.3e-06  Score=70.73  Aligned_cols=37  Identities=19%  Similarity=0.164  Sum_probs=17.8

Q ss_pred             CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857          123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC  163 (439)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~  163 (439)
                      .+++|+.|+++++. +..++.+.   ...+++|+.|++.++
T Consensus        76 ~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           76 KLTQLTQLSLNDNQ-LKSIPRGA---FDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCc-cCEeCHHH---hcCCCCCCEEEeCCC
Confidence            34555555555432 33333221   124566666666664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.21  E-value=8.8e-05  Score=71.00  Aligned_cols=78  Identities=9%  Similarity=0.047  Sum_probs=49.5

Q ss_pred             ccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCC
Q 046857          323 VFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETE  401 (439)
Q Consensus       323 ~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  401 (439)
                      .+.+|+.+.+.+  .++.+... ...|.+|+.+++..  .++.+ +...+..+.+|+.+++..  +++.+...       
T Consensus       295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I-~~~aF~~c~~L~~i~lp~--~l~~I~~~-------  360 (394)
T 4fs7_A          295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEI-GKRSFRGCTSLSNINFPL--SLRKIGAN-------  360 (394)
T ss_dssp             TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEECTT-------
T ss_pred             cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEE-hHHhccCCCCCCEEEECc--cccEehHH-------
Confidence            567888888754  35556544 34788999988853  46766 444556778888887754  24444322       


Q ss_pred             CceEeccccEEec
Q 046857          402 DCIVFGKLRYLEL  414 (439)
Q Consensus       402 ~~~~l~~L~~l~l  414 (439)
                      .+..+++|+.+.+
T Consensus       361 aF~~C~~L~~i~l  373 (394)
T 4fs7_A          361 AFQGCINLKKVEL  373 (394)
T ss_dssp             TBTTCTTCCEEEE
T ss_pred             HhhCCCCCCEEEE
Confidence            4555666666655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.21  E-value=2.7e-06  Score=71.23  Aligned_cols=83  Identities=19%  Similarity=0.168  Sum_probs=55.2

Q ss_pred             cCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEEccCCCcccccChhHHhhc
Q 046857          296 FPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQVSKCHGLINVLTLSASKNL  374 (439)
Q Consensus       296 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~p~~~~~~l  374 (439)
                      +++|+.|+++++ .++.+....+.   .+++|++|+++++ .++.++... ..+++|++|+++++ +++.+ +...+..+
T Consensus        29 ~~~l~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~-~~~~~~~l  101 (170)
T 3g39_A           29 PTTTQVLYLYDN-QITKLEPGVFD---RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSI-PRGAFDNL  101 (170)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTC
T ss_pred             CCCCcEEEcCCC-cCCccChhhhc---CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEe-CHHHhcCC
Confidence            467788887774 45555444333   6777888888776 456666554 57778888888773 57766 44445677


Q ss_pred             cccceEEEccc
Q 046857          375 VNLGRMKIVDC  385 (439)
Q Consensus       375 ~~L~~L~l~~c  385 (439)
                      ++|+.|+++++
T Consensus       102 ~~L~~L~L~~N  112 (170)
T 3g39_A          102 KSLTHIWLLNN  112 (170)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCEEEeCCC
Confidence            78888888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.20  E-value=3e-06  Score=71.34  Aligned_cols=84  Identities=19%  Similarity=0.182  Sum_probs=60.8

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEEccCCCcccccChhHHhh
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQVSKCHGLINVLTLSASKN  373 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~p~~~~~~  373 (439)
                      .+++|+.|+++++ .++.+....+.   .+++|++|+++++ .++.+|... ..+++|++|++++ ++++.+ |...+..
T Consensus        31 ~~~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l-~~~~~~~  103 (174)
T 2r9u_A           31 IPTDKQRLWLNNN-QITKLEPGVFD---HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSI-PRGAFDN  103 (174)
T ss_dssp             CCTTCSEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTT
T ss_pred             cCCCCcEEEeCCC-CccccCHHHhc---CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-Ccccee-CHHHhcc
Confidence            3478888888875 45655444343   6788888888886 566777654 5788888888887 467776 5444667


Q ss_pred             ccccceEEEccc
Q 046857          374 LVNLGRMKIVDC  385 (439)
Q Consensus       374 l~~L~~L~l~~c  385 (439)
                      +++|+.|+++++
T Consensus       104 l~~L~~L~L~~N  115 (174)
T 2r9u_A          104 LKSLTHIYLYNN  115 (174)
T ss_dssp             CTTCSEEECCSS
T ss_pred             ccCCCEEEeCCC
Confidence            888888888876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.13  E-value=4.4e-06  Score=70.28  Aligned_cols=36  Identities=22%  Similarity=0.396  Sum_probs=16.6

Q ss_pred             cCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857          152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~  189 (439)
                      +++|+.|+++++ .++. ++...+..+++|++|+++++
T Consensus        80 l~~L~~L~L~~N-~l~~-l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           80 LTQLTQLDLNDN-HLKS-IPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CTTCCEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSS
T ss_pred             cchhhEEECCCC-ccce-eCHHHhccccCCCEEEeCCC
Confidence            445555555443 3333 23333444555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.07  E-value=6.9e-06  Score=77.52  Aligned_cols=166  Identities=14%  Similarity=0.157  Sum_probs=87.0

Q ss_pred             cccCceEEEccccccc-eeccccccccccccccccccceeecccccccc----ccc----cccCccCCCCccEEeeccCC
Q 046857            9 PNSLVNLNVSYCEKIE-EIIGHVGEEVKENRIAFSNLKVLILDYLPRLT----SFC----LENYTLEFPSLERVSMTRCP   79 (439)
Q Consensus         9 ~~~L~~L~l~~c~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~----~~~~~~~l~~L~~L~l~~c~   79 (439)
                      .+.++.|.+..+. .. ...........+....|++|+.|.+.+.. ..    .|.    ....+..+|+|+.|++++|.
T Consensus       106 ~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~  183 (362)
T 2ra8_A          106 LPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN  183 (362)
T ss_dssp             GGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred             chhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence            4567788888664 22 00000000000112258899999886531 11    010    11223468999999999874


Q ss_pred             CccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC-------CceeecCCCCCCcCcc
Q 046857           80 NMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP-------RLKEIWHGQALPVRFF  152 (439)
Q Consensus        80 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-------~l~~i~~~~~l~~~~~  152 (439)
                      .+. ++. + .+++|++|++..+.+..     ..+..+.  ...+++|++|+|+...       .+..+...  +....+
T Consensus       184 ~l~-l~~-~-~~~~L~~L~L~~~~l~~-----~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~--l~~~~~  251 (362)
T 2ra8_A          184 NLS-IGK-K-PRPNLKSLEIISGGLPD-----SVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL--FSKDRF  251 (362)
T ss_dssp             TCB-CCS-C-BCTTCSEEEEECSBCCH-----HHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGTGGG--SCTTTC
T ss_pred             Cce-ecc-c-cCCCCcEEEEecCCCCh-----HHHHHHH--HccCCCCcEEEEeccccccccchhHHHHHHH--HhcCCC
Confidence            443 443 3 38899999997744321     1111111  1257899999885311       11111110  122357


Q ss_pred             CCccEEEeccccccccccchhHH--hhccccceeeeccc
Q 046857          153 NYLAELEVDYCTNMSSAIPANLL--RCLNNLARLEVRNC  189 (439)
Q Consensus       153 ~~L~~L~l~~~~~l~~~~~~~~~--~~l~~L~~L~l~~~  189 (439)
                      |+|+.|++.+|. +.+..+..++  ..+++|++|+++++
T Consensus       252 p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          252 PNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             TTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             CCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCC
Confidence            889999988764 3322222222  24678888888754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.98  E-value=1e-06  Score=83.80  Aligned_cols=168  Identities=15%  Similarity=0.041  Sum_probs=81.5

Q ss_pred             ccccceeeccccccccccccc---cCcc-CCCCccEEeeccCCCccc--cccCCcCccCccceeecCceeeecCcCchhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLE---NYTL-EFPSLERVSMTRCPNMKT--FSQGIVSTPKLHEVQEEGELCRWEGNLNSTI  114 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~---~~~~-~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  114 (439)
                      +++|++|+++++. +......   ..+. ..++|++|++++|. +..  +..-...+++|++|++++|.+..     ...
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-----~~~  143 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGP-----EAC  143 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCH-----HHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCH-----HHH
Confidence            5677777777732 1111000   0011 23577778877764 331  22222335677777777754431     122


Q ss_pred             hhhhhhhc-CCCCccEEEccCCCCceeecCCCCCCc--CccCCccEEEeccccccccccc---hhHHhhccccceeeecc
Q 046857          115 QKCYEEMI-GFRDIQYLQLSHFPRLKEIWHGQALPV--RFFNYLAELEVDYCTNMSSAIP---ANLLRCLNNLARLEVRN  188 (439)
Q Consensus       115 ~~l~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~  188 (439)
                      ..+...+. ..++|++|++++|. +.+..... ++.  ..+++|++|++++|. +++...   ...+...++|++|++++
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV-LMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH-HHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred             HHHHHHHHhcCCccceeeCCCCC-CChHHHHH-HHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC
Confidence            23333332 35678888887664 33211100 100  235678888887763 443211   11234556788888887


Q ss_pred             ccccchhccccccccccCcccccccccceEecCCcc
Q 046857          189 CDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       189 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                      |. +.....    ......+... ++|++|+++++.
T Consensus       221 N~-i~~~g~----~~l~~~L~~~-~~L~~L~Ls~N~  250 (372)
T 3un9_A          221 NG-AGDTAA----LALARAAREH-PSLELLHLYFNE  250 (372)
T ss_dssp             SC-CCHHHH----HHHHHHHHHC-SSCCEEECTTSS
T ss_pred             CC-CCHHHH----HHHHHHHHhC-CCCCEEeccCCC
Confidence            63 332110    0000001112 778888887763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.95  E-value=3.9e-06  Score=79.22  Aligned_cols=175  Identities=11%  Similarity=0.073  Sum_probs=96.6

Q ss_pred             CCccccCceEEEccccccceeccccc-cccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc-c
Q 046857            6 VGIPNSLVNLNVSYCEKIEEIIGHVG-EEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK-T   83 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~   83 (439)
                      ...+++|+.|.|.+...-+.-.++.. .....-...+|+|+.|.++++..+ .+  .+ + ..++|++|++..|. +. .
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l--~~-~-~~~~L~~L~L~~~~-l~~~  208 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SI--GK-K-PRPNLKSLEIISGG-LPDS  208 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BC--CS-C-BCTTCSEEEEECSB-CCHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-ee--cc-c-cCCCCcEEEEecCC-CChH
Confidence            34678999999976421100000000 000001125899999999985322 12  12 2 48999999999864 33 1


Q ss_pred             cccCC--cCccCccceeecCceeeecCcCchhhhhhhhhh--cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEE
Q 046857           84 FSQGI--VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM--IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELE  159 (439)
Q Consensus        84 l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~  159 (439)
                      ....+  ..+|+|++|+++.+.....++  ..+..+-..+  ..+++|+.|.+.+|.......... .....+++|++|+
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~~~L~~Ld  285 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFD--GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-LESDILPQLETMD  285 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCC--SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH-HHCSSGGGCSEEE
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccc--hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH-HhCccCCCCCEEE
Confidence            11122  368999999985321111111  1111221112  258999999998766332111100 0112589999999


Q ss_pred             eccccccccccchhH---Hhhccccceeeecccc
Q 046857          160 VDYCTNMSSAIPANL---LRCLNNLARLEVRNCD  190 (439)
Q Consensus       160 l~~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~  190 (439)
                      ++.+ .+++.....+   +..+++|+.|++++|.
T Consensus       286 Ls~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          286 ISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            9764 5665322221   3567899999998774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.78  E-value=4.4e-05  Score=71.72  Aligned_cols=9  Identities=33%  Similarity=0.224  Sum_probs=4.7

Q ss_pred             ccEEEeccc
Q 046857          155 LAELEVDYC  163 (439)
Q Consensus       155 L~~L~l~~~  163 (439)
                      |+.|++.++
T Consensus       105 L~~l~l~~N  113 (347)
T 2ifg_A          105 LQELVLSGN  113 (347)
T ss_dssp             CCEEECCSS
T ss_pred             ceEEEeeCC
Confidence            555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.74  E-value=6.2e-05  Score=70.68  Aligned_cols=59  Identities=15%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-CCcCccCccceeecC
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEG  101 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~  101 (439)
                      +++|+.|+|++..++..++.. .+..+++|++|+++++ .+..++. .+..+++|++|++++
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence            445566666543344433211 1445556666666654 3444332 345556666666655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.61  E-value=0.014  Score=55.50  Aligned_cols=301  Identities=10%  Similarity=0.077  Sum_probs=150.8

Q ss_pred             CCCccc-cCceEEEccccccceeccccccccccccccccccceeecccc--ccccccccccCccCCCCccEEeeccCCCc
Q 046857            5 SVGIPN-SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYL--PRLTSFCLENYTLEFPSLERVSMTRCPNM   81 (439)
Q Consensus         5 ~~~~~~-~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~L~~L~l~~c~~l   81 (439)
                      .|.++. .|+.+.|-+  .++.+.....       ..+.+|+.+.+...  +.++.+... .+..+.+|+.+.+.+  .+
T Consensus        58 aF~~~~~~L~sI~iP~--svt~Ig~~AF-------~~C~~L~~i~~~~n~p~~l~~Ig~~-aF~~c~~L~~i~~~~--~~  125 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPD--TVTEIGSNAF-------YNCTSLKRVTIQDNKPSCVKKIGRQ-AFMFCSELTDIPILD--SV  125 (394)
T ss_dssp             TTTTCCSCCCEEEECT--TCCEECTTTT-------TTCTTCCEEEEGGGCCCCCCEECTT-TTTTCTTCCBCGGGT--TC
T ss_pred             hccCCCCcCEEEEECC--CeeEEhHHHh-------hCCccCceEeecCCCCCeeeEechh-hchhcccceeeccCC--cc
Confidence            355664 588887754  3555544321       14678888888652  234444322 244567777766654  35


Q ss_pred             cccccC-CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEe
Q 046857           82 KTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEV  160 (439)
Q Consensus        82 ~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l  160 (439)
                      +.++.. +..+.+|+.+.+........++          .+..+..|+.+.+.+.  +..+.... +   ...+|+.+.+
T Consensus       126 ~~I~~~aF~~c~~L~~i~lp~~~~~I~~~----------~F~~c~~L~~i~~~~~--~~~I~~~a-F---~~~~l~~i~i  189 (394)
T 4gt6_A          126 TEIDSEAFHHCEELDTVTIPEGVTSVADG----------MFSYCYSLHTVTLPDS--VTAIEERA-F---TGTALTQIHI  189 (394)
T ss_dssp             SEECTTTTTTCTTCCEEECCTTCCEECTT----------TTTTCTTCCEEECCTT--CCEECTTT-T---TTCCCSEEEE
T ss_pred             ceehhhhhhhhcccccccccceeeeeccc----------ceecccccccccccce--eeEecccc-c---cccceeEEEE
Confidence            555533 4668888888876522111111          2335788888888643  45554433 1   2456888888


Q ss_pred             ccccccccccchhHHhhccccceeeeccccccchhcc--ccccccccCccccc--ccccceEecCCcccccccccCCCcc
Q 046857          161 DYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH--LEELNADKEHIGPL--FPRLFSLTLIDLPKLKRFCNFTGNI  236 (439)
Q Consensus       161 ~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~  236 (439)
                      ..  .++. +....+..+..++......... .....  ..............  ...+..+.+.  ..++.+...  ..
T Consensus       190 p~--~~~~-i~~~af~~c~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~v~~i~~~--aF  261 (394)
T 4gt6_A          190 PA--KVTR-IGTNAFSECFALSTITSDSESY-PAIDNVLYEKSANGDYALIRYPSQREDPAFKIP--NGVARIETH--AF  261 (394)
T ss_dssp             CT--TCCE-ECTTTTTTCTTCCEEEECCSSS-CBSSSCEEEECTTSCEEEEECCTTCCCSEEECC--TTEEEECTT--TT
T ss_pred             CC--cccc-cccchhhhccccceeccccccc-ccccceeecccccccccccccccccccceEEcC--CcceEcccc--ee
Confidence            55  3333 2233356667777665543211 10000  00000000000000  0111111111  011111111  11


Q ss_pred             cCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCceecccc
Q 046857          237 IEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKE  316 (439)
Q Consensus       237 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~  316 (439)
                      ..|++|+.+.+.+  .+..+...                                +....++|+.+.+..  .++.+...
T Consensus       262 ~~c~~L~~i~lp~--~~~~I~~~--------------------------------aF~~c~~L~~i~l~~--~i~~I~~~  305 (394)
T 4gt6_A          262 DSCAYLASVKMPD--SVVSIGTG--------------------------------AFMNCPALQDIEFSS--RITELPES  305 (394)
T ss_dssp             TTCSSCCEEECCT--TCCEECTT--------------------------------TTTTCTTCCEEECCT--TCCEECTT
T ss_pred             eecccccEEeccc--ccceecCc--------------------------------ccccccccccccCCC--cccccCce
Confidence            2445555555433  11111111                                122345666666642  45555555


Q ss_pred             CCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857          317 NDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       317 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c  385 (439)
                      .+.   .+++|+++.+.+  .++.+... ...|.+|+.+.+-.  .++.+ ....+..+++|+.+++.+.
T Consensus       306 aF~---~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I-~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          306 VFA---GCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKI-PESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTT---TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBC-CGGGGTTCTTCCEEEESSC
T ss_pred             eec---CCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEE-hHhHhhCCCCCCEEEECCc
Confidence            444   667888888753  35555443 34688888888853  46665 5555677888888888764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.56  E-value=0.019  Score=54.54  Aligned_cols=296  Identities=11%  Similarity=0.105  Sum_probs=151.5

Q ss_pred             ccceeeccccccccccccccCccCCCCccEEeeccC--CCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857           43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRC--PNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE  119 (439)
Q Consensus        43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c--~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  119 (439)
                      .|+++.+-.  .++.+... .+..+.+|+.+.+.+.  ..++.++.. +..+.+|+.+.+....           ..+..
T Consensus        65 ~L~sI~iP~--svt~Ig~~-AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~-----------~~I~~  130 (394)
T 4gt6_A           65 VLTSVQIPD--TVTEIGSN-AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSV-----------TEIDS  130 (394)
T ss_dssp             CCCEEEECT--TCCEECTT-TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTC-----------SEECT
T ss_pred             cCEEEEECC--CeeEEhHH-HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCcc-----------ceehh
Confidence            477777754  34444322 2567899999999763  356666543 5668888888765522           11111


Q ss_pred             -hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccc
Q 046857          120 -EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHL  198 (439)
Q Consensus       120 -~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  198 (439)
                       .+..+.+|+.+.+...  +..+....   ...+.+|+.+.+..  .++. +....+. ..+|+.+.+...  +..+.. 
T Consensus       131 ~aF~~c~~L~~i~lp~~--~~~I~~~~---F~~c~~L~~i~~~~--~~~~-I~~~aF~-~~~l~~i~ip~~--~~~i~~-  198 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG--VTSVADGM---FSYCYSLHTVTLPD--SVTA-IEERAFT-GTALTQIHIPAK--VTRIGT-  198 (394)
T ss_dssp             TTTTTCTTCCEEECCTT--CCEECTTT---TTTCTTCCEEECCT--TCCE-ECTTTTT-TCCCSEEEECTT--CCEECT-
T ss_pred             hhhhhhcccccccccce--eeeecccc---eecccccccccccc--eeeE-ecccccc-ccceeEEEECCc--cccccc-
Confidence             2346889999999643  44444433   24688999998865  4544 2333344 356888877642  111110 


Q ss_pred             cccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCC-ccCcc
Q 046857          199 EELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQ-KLTLE  277 (439)
Q Consensus       199 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~l~  277 (439)
                             ...... .+++........              .+.........+.........  ......+..+. -+.+.
T Consensus       199 -------~af~~c-~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ip~~v~  254 (394)
T 4gt6_A          199 -------NAFSEC-FALSTITSDSES--------------YPAIDNVLYEKSANGDYALIR--YPSQREDPAFKIPNGVA  254 (394)
T ss_dssp             -------TTTTTC-TTCCEEEECCSS--------------SCBSSSCEEEECTTSCEEEEE--CCTTCCCSEEECCTTEE
T ss_pred             -------chhhhc-cccceecccccc--------------cccccceeecccccccccccc--cccccccceEEcCCcce
Confidence                   000001 333333222110              000000000000000000000  00000000000 00000


Q ss_pred             eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEE
Q 046857          278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQV  356 (439)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l  356 (439)
                      .+         ...+.....+|+.+.+..  .+..+....+.   .++.|+.+.+.  ..++.++... ..|.+|+.+++
T Consensus       255 ~i---------~~~aF~~c~~L~~i~lp~--~~~~I~~~aF~---~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~l  318 (394)
T 4gt6_A          255 RI---------ETHAFDSCAYLASVKMPD--SVVSIGTGAFM---NCPALQDIEFS--SRITELPESVFAGCISLKSIDI  318 (394)
T ss_dssp             EE---------CTTTTTTCSSCCEEECCT--TCCEECTTTTT---TCTTCCEEECC--TTCCEECTTTTTTCTTCCEEEC
T ss_pred             Ec---------ccceeeecccccEEeccc--ccceecCcccc---cccccccccCC--CcccccCceeecCCCCcCEEEe
Confidence            00         000122335667776643  34444444343   67889988885  3466666544 47899999999


Q ss_pred             ccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCC
Q 046857          357 SKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDC  416 (439)
Q Consensus       357 ~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~  416 (439)
                      ..  .++.+ ....+..+.+|+.+.+..  +++.+...       .+.++++|+.+.+.+
T Consensus       319 p~--~v~~I-~~~aF~~C~~L~~i~ip~--sv~~I~~~-------aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          319 PE--GITQI-LDDAFAGCEQLERIAIPS--SVTKIPES-------AFSNCTALNNIEYSG  366 (394)
T ss_dssp             CT--TCCEE-CTTTTTTCTTCCEEEECT--TCCBCCGG-------GGTTCTTCCEEEESS
T ss_pred             CC--cccEe-hHhHhhCCCCCCEEEECc--ccCEEhHh-------HhhCCCCCCEEEECC
Confidence            64  47776 555567889999999854  35555432       566778888887654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.41  E-value=2.5e-05  Score=74.09  Aligned_cols=169  Identities=15%  Similarity=0.073  Sum_probs=103.2

Q ss_pred             cccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccc-----
Q 046857            9 PNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT-----   83 (439)
Q Consensus         9 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----   83 (439)
                      .++|+.|+|++|..-..-...+....   ....++|++|+++++. +.+.........+++|++|++++| .+..     
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L---~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~  145 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVL---GSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKD  145 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHH---SSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHH---hhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHH
Confidence            56899999999974332222211110   0023699999999942 222111111234678999999997 4542     


Q ss_pred             cccCC-cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCC--cCccCCccEEEe
Q 046857           84 FSQGI-VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALP--VRFFNYLAELEV  160 (439)
Q Consensus        84 l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~--~~~~~~L~~L~l  160 (439)
                      +...+ ...++|++|++++|.+..     .....+...+...++|++|+++++. +.+..... +.  ....++|++|++
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~-----~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~-L~~~L~~~~~L~~L~L  218 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTA-----AGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLEL-LAAQLDRNRQLQELNV  218 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHH-----HHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHH-HHHHGGGCSCCCEEEC
T ss_pred             HHHHHHhcCCccceeeCCCCCCCh-----HHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHH-HHHHHhcCCCcCeEEC
Confidence            22222 246889999999966442     2344566666678999999999776 44321000 00  024678999999


Q ss_pred             ccccccccccchh---HHhhccccceeeecccc
Q 046857          161 DYCTNMSSAIPAN---LLRCLNNLARLEVRNCD  190 (439)
Q Consensus       161 ~~~~~l~~~~~~~---~~~~l~~L~~L~l~~~~  190 (439)
                      ++| .+++.....   .+...++|++|++++|.
T Consensus       219 s~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          219 AYN-GAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            997 455432222   24456899999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.09  E-value=0.05  Score=51.27  Aligned_cols=52  Identities=13%  Similarity=0.197  Sum_probs=25.7

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCC-cCccCccceee
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGI-VSTPKLHEVQE   99 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l   99 (439)
                      .+|+.+.+..  .++.+... .+..+.+|+.+.+.+  .++.++... ..+ +|+.+.+
T Consensus        46 ~~i~~v~ip~--~vt~Ig~~-aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~   98 (379)
T 4h09_A           46 DRISEVRVNS--GITSIGEA-NFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTG   98 (379)
T ss_dssp             GGCSEEEECT--TEEEECTT-TTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEE
T ss_pred             cCCEEEEeCC--CccChHHH-HhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEEC
Confidence            4555555543  33333222 245567777777754  355555432 223 4555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.92  E-value=0.00096  Score=56.34  Aligned_cols=114  Identities=12%  Similarity=0.102  Sum_probs=57.6

Q ss_pred             cCCCCccEEeeccCCCcc-----ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCce
Q 046857           65 LEFPSLERVSMTRCPNMK-----TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLK  139 (439)
Q Consensus        65 ~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  139 (439)
                      ...++|++|++++|..+.     .+...+...++|++|++++|.+..     .....+...+...++|++|+++++. +.
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~-----~g~~~l~~~L~~n~~L~~L~L~~N~-i~  106 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-----PVAFALAEMLKVNNTLKSLNVESNF-IS  106 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-----HHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh-----HHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence            345667777777653333     133344455667777776654332     1222333444445667777777554 32


Q ss_pred             e-----ecCCCCCCcCccCCccEEEe--ccccccccccch---hHHhhccccceeeeccc
Q 046857          140 E-----IWHGQALPVRFFNYLAELEV--DYCTNMSSAIPA---NLLRCLNNLARLEVRNC  189 (439)
Q Consensus       140 ~-----i~~~~~l~~~~~~~L~~L~l--~~~~~l~~~~~~---~~~~~l~~L~~L~l~~~  189 (439)
                      +     +....    ...++|++|++  .++ .+++....   ..+...++|++|++++|
T Consensus       107 ~~g~~~l~~~L----~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          107 GSGILALVEAL----QSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHHGG----GGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHH----HhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            1     11111    23456777777  443 34332111   12344467777777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.83  E-value=0.17  Score=47.55  Aligned_cols=79  Identities=14%  Similarity=0.106  Sum_probs=40.2

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      ...+|+.+.+.+  +++.+....       +..+.+|+.+.+..  .+..+.... +..+ +|+.+.+-.  .++.++..
T Consensus        44 ~~~~i~~v~ip~--~vt~Ig~~a-------F~~C~~L~~I~lp~--~v~~Ig~~a-F~~c-~l~~i~~~~--~l~~I~~~  108 (379)
T 4h09_A           44 DRDRISEVRVNS--GITSIGEAN-------FNSCYNMTKVTVAS--TVTSIGDGA-FADT-KLQSYTGME--RVKKFGDY  108 (379)
T ss_dssp             GGGGCSEEEECT--TEEEECTTT-------TTTCTTCCEEEECT--TCCEECTTT-TTTC-CCCEEEECT--TCCEECTT
T ss_pred             cccCCEEEEeCC--CccChHHHH-------hhCCCCCCEEEeCC--cceEechhh-hcCC-CCceEECCc--eeeEeccc
Confidence            344555555542  344444321       22467888888854  344443221 2333 566665543  45556554


Q ss_pred             CcCccCccceeecC
Q 046857           88 IVSTPKLHEVQEEG  101 (439)
Q Consensus        88 ~~~l~~L~~L~l~~  101 (439)
                      .-...+|+.+.+..
T Consensus       109 aF~~~~L~~i~lp~  122 (379)
T 4h09_A          109 VFQGTDLDDFEFPG  122 (379)
T ss_dssp             TTTTCCCSEEECCT
T ss_pred             eeccCCcccccCCC
Confidence            43344677776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.68  E-value=0.00066  Score=57.35  Aligned_cols=117  Identities=10%  Similarity=0.074  Sum_probs=69.3

Q ss_pred             cccccceeeccccccccccc---cccCccCCCCccEEeeccCCCccc-----cccCCcCccCccceeecCceeeecCcCc
Q 046857           40 AFSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCPNMKT-----FSQGIVSTPKLHEVQEEGELCRWEGNLN  111 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~  111 (439)
                      ..+.|++|+++++..+.+-.   ....+...++|++|++++|. +..     +...+...++|++|++++|.+..     
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~-----  107 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISG-----  107 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCH-----
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCH-----
Confidence            46778888888752332211   11223456788888888864 442     33444556788889988865442     


Q ss_pred             hhhhhhhhhhcCCCCccEEEc--cCCCCceeecCCCCCC--cCccCCccEEEecccc
Q 046857          112 STIQKCYEEMIGFRDIQYLQL--SHFPRLKEIWHGQALP--VRFFNYLAELEVDYCT  164 (439)
Q Consensus       112 ~~~~~l~~~~~~~~~L~~L~l--~~~~~l~~i~~~~~l~--~~~~~~L~~L~l~~~~  164 (439)
                      .....+...+...++|++|++  +++. +.+..... +.  ....++|++|+++++.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~-l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEME-IANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHH-HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHH-HHHHHHhCCCcCEEeccCCC
Confidence            234456666667788999999  5443 43211000 00  0235789999998863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.19  E-value=0.0017  Score=57.99  Aligned_cols=89  Identities=16%  Similarity=0.063  Sum_probs=54.1

Q ss_pred             cccccceeeccccccccccccc-cCccCCCCccEEeeccCCCccccccCCcCcc--CccceeecCceeeecCcCchhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLE-NYTLEFPSLERVSMTRCPNMKTFSQGIVSTP--KLHEVQEEGELCRWEGNLNSTIQK  116 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~  116 (439)
                      .+++|++|+|++ .++..+... ..+..+++|+.|+++++ .++.+ ..+..+.  +|++|++++|.++..-  ......
T Consensus       168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~--~~~~~y  242 (267)
T 3rw6_A          168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTF--RDQSTY  242 (267)
T ss_dssp             HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGC--SSHHHH
T ss_pred             hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCcccc--CcchhH
Confidence            488999999999 333333211 12347999999999995 56655 3344455  8999999996644210  000011


Q ss_pred             hhhhhcCCCCccEEEcc
Q 046857          117 CYEEMIGFRDIQYLQLS  133 (439)
Q Consensus       117 l~~~~~~~~~L~~L~l~  133 (439)
                      ....+..+++|+.|+=.
T Consensus       243 ~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          243 ISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHCTTCCEESSC
T ss_pred             HHHHHHHCcccCeECCc
Confidence            11234468889888754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.83  E-value=0.024  Score=50.59  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=55.2

Q ss_pred             cCCCCccEEeeccCCCccc---cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee
Q 046857           65 LEFPSLERVSMTRCPNMKT---FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI  141 (439)
Q Consensus        65 ~~l~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i  141 (439)
                      ..+++|+.|+++++ .+..   +|..+..+++|+.|++++|.+...+.+        ..+..+ +|++|.+.+++-...+
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l--------~~l~~l-~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL--------DKIKGL-KLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG--------GGGTTS-CCSEEECTTSTTGGGC
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhh--------hhcccC-CcceEEccCCcCcccc
Confidence            46899999999996 5554   445556899999999999665432211        112234 8999999988743322


Q ss_pred             cCCCC---CCcCccCCccEEEe
Q 046857          142 WHGQA---LPVRFFNYLAELEV  160 (439)
Q Consensus       142 ~~~~~---l~~~~~~~L~~L~l  160 (439)
                      +....   -....+|+|+.|+-
T Consensus       237 ~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          237 RDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             SSHHHHHHHHHHHCTTCCEESS
T ss_pred             CcchhHHHHHHHHCcccCeECC
Confidence            21000   00135889998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	439
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.72
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.49
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.33
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.32
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.31
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.31
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.26
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.24
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.24
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.22
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.12
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.12
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.77
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.74
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.5
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.08
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.08
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.01
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6.7e-17  Score=153.21  Aligned_cols=324  Identities=16%  Similarity=0.157  Sum_probs=163.6

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      .+.+|++|++++|. ++.+ ++++        .+++|++|+++++ ++.++   +.+..+++|++|++++|. +..++. 
T Consensus        42 ~l~~l~~L~l~~~~-I~~l-~gl~--------~L~nL~~L~Ls~N-~l~~l---~~l~~L~~L~~L~L~~n~-i~~i~~-  105 (384)
T d2omza2          42 DLDQVTTLQADRLG-IKSI-DGVE--------YLNNLTQINFSNN-QLTDI---TPLKNLTKLVDILMNNNQ-IADITP-  105 (384)
T ss_dssp             HHTTCCEEECCSSC-CCCC-TTGG--------GCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCCGG-
T ss_pred             HhCCCCEEECCCCC-CCCc-cccc--------cCCCCCEEeCcCC-cCCCC---ccccCCcccccccccccc-cccccc-
Confidence            45678888888874 4444 2222        4778888888883 44444   346778888888888864 555542 


Q ss_pred             CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC-------------CceeecCCC-CCCc-Ccc
Q 046857           88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP-------------RLKEIWHGQ-ALPV-RFF  152 (439)
Q Consensus        88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-------------~l~~i~~~~-~l~~-~~~  152 (439)
                      ++.+++|+.+++.++.........           ....+.......+.             ......... .+.. ...
T Consensus       106 l~~l~~L~~L~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (384)
T d2omza2         106 LANLTNLTGLTLFNNQITDIDPLK-----------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL  174 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGT-----------TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred             cccccccccccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccchhhhhccc
Confidence            677888888887765443222110           01111111111000             000000000 0000 001


Q ss_pred             CCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccC
Q 046857          153 NYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNF  232 (439)
Q Consensus       153 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  232 (439)
                      +.........+  ... .. .....+++++.++++++ .+..+.+..           ..++|++|++.++ .++.++  
T Consensus       175 ~~~~~~~~~~~--~~~-~~-~~~~~l~~~~~l~l~~n-~i~~~~~~~-----------~~~~L~~L~l~~n-~l~~~~--  235 (384)
T d2omza2         175 TTLERLDISSN--KVS-DI-SVLAKLTNLESLIATNN-QISDITPLG-----------ILTNLDELSLNGN-QLKDIG--  235 (384)
T ss_dssp             TTCCEEECCSS--CCC-CC-GGGGGCTTCSEEECCSS-CCCCCGGGG-----------GCTTCCEEECCSS-CCCCCG--
T ss_pred             ccccccccccc--ccc-cc-cccccccccceeeccCC-ccCCCCccc-----------ccCCCCEEECCCC-CCCCcc--
Confidence            11111111111  010 11 11344555566655543 222222211           1155666666555 233321  


Q ss_pred             CCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCc
Q 046857          233 TGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKV  310 (439)
Q Consensus       233 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  310 (439)
                        ....+++|+.+++.++ .+..+++   ...+++|+.|  +.+.+..+.           +...++.++.+.+..+. +
T Consensus       236 --~l~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~~~l~~~~-----------~~~~~~~l~~l~~~~n~-l  297 (384)
T d2omza2         236 --TLASLTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGANQISNIS-----------PLAGLTALTNLELNENQ-L  297 (384)
T ss_dssp             --GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSCCCCCG-----------GGTTCTTCSEEECCSSC-C
T ss_pred             --hhhcccccchhccccC-ccCCCCc---ccccccCCEeeccCcccCCCC-----------ccccccccccccccccc-c
Confidence              1124566666666654 2333322   2344555555  333333321           23455566777666542 3


Q ss_pred             eeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchh
Q 046857          311 QHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEE  390 (439)
Q Consensus       311 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~  390 (439)
                      ..+.  .+   ..+++++.|+++++ .++.+++ +..+++|++|++++| +++++ +.  +..+++|+.|++++| .+++
T Consensus       298 ~~~~--~~---~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n-~l~~l-~~--l~~l~~L~~L~l~~N-~l~~  365 (384)
T d2omza2         298 EDIS--PI---SNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN-KVSDV-SS--LANLTNINWLSAGHN-QISD  365 (384)
T ss_dssp             SCCG--GG---GGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCC-GG--GGGCTTCCEEECCSS-CCCB
T ss_pred             cccc--cc---chhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC-CCCCC-hh--HcCCCCCCEEECCCC-cCCC
Confidence            3221  11   26778888888776 4555543 667888888888886 57765 32  467888888888877 5655


Q ss_pred             hccccccccCCCceEeccccEEecCC
Q 046857          391 IIQSQVGEETEDCIVFGKLRYLELDC  416 (439)
Q Consensus       391 ~~~~~~~~~~~~~~~l~~L~~l~l~~  416 (439)
                      +.         .+.++++|++|++++
T Consensus       366 l~---------~l~~l~~L~~L~L~~  382 (384)
T d2omza2         366 LT---------PLANLTRITQLGLND  382 (384)
T ss_dssp             CG---------GGTTCTTCSEEECCC
T ss_pred             Ch---------hhccCCCCCEeeCCC
Confidence            43         355677788887765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=7.6e-15  Score=138.76  Aligned_cols=314  Identities=14%  Similarity=0.166  Sum_probs=186.8

Q ss_pred             CCCCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCc
Q 046857            2 ALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNM   81 (439)
Q Consensus         2 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l   81 (439)
                      ++..+.++++|++|++++|. ++.+++ ++        .+++|++|+++++ .+.++   +.+..+++|+.|++.++. +
T Consensus        58 ~l~gl~~L~nL~~L~Ls~N~-l~~l~~-l~--------~L~~L~~L~L~~n-~i~~i---~~l~~l~~L~~L~~~~~~-~  122 (384)
T d2omza2          58 SIDGVEYLNNLTQINFSNNQ-LTDITP-LK--------NLTKLVDILMNNN-QIADI---TPLANLTNLTGLTLFNNQ-I  122 (384)
T ss_dssp             CCTTGGGCTTCCEEECCSSC-CCCCGG-GT--------TCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-C
T ss_pred             CccccccCCCCCEEeCcCCc-CCCCcc-cc--------CCccccccccccc-ccccc---cccccccccccccccccc-c
Confidence            45567889999999999995 666654 33        5899999999994 33333   447789999999998864 4


Q ss_pred             cccccCCcCccCccceeecCceeeecCcCchhh----------hhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCc
Q 046857           82 KTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTI----------QKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRF  151 (439)
Q Consensus        82 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~  151 (439)
                      ..++.. .....+.......+.+..........          ......+.............+....  +    .....
T Consensus       123 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~  195 (384)
T d2omza2         123 TDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--I----SVLAK  195 (384)
T ss_dssp             CCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC--C----GGGGG
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc--c----ccccc
Confidence            444322 22334444444332222111100000          0000001112222222222111110  1    11135


Q ss_pred             cCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccccccc
Q 046857          152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCN  231 (439)
Q Consensus       152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  231 (439)
                      +++++.+.+.++ .+++..+   ...+++|++|++.++ .++.++.+.           .+++|+.|++.++. +..+. 
T Consensus       196 l~~~~~l~l~~n-~i~~~~~---~~~~~~L~~L~l~~n-~l~~~~~l~-----------~l~~L~~L~l~~n~-l~~~~-  257 (384)
T d2omza2         196 LTNLESLIATNN-QISDITP---LGILTNLDELSLNGN-QLKDIGTLA-----------SLTNLTDLDLANNQ-ISNLA-  257 (384)
T ss_dssp             CTTCSEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCGGGG-----------GCTTCSEEECCSSC-CCCCG-
T ss_pred             ccccceeeccCC-ccCCCCc---ccccCCCCEEECCCC-CCCCcchhh-----------cccccchhccccCc-cCCCC-
Confidence            678888888775 4554322   355678888888876 344433222           13788888888774 43332 


Q ss_pred             CCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCC
Q 046857          232 FTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHK  309 (439)
Q Consensus       232 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  309 (439)
                         ....+++|+.+++..+ .+..+++   ...++.++.+  ..+.+.++           .....+++++.++++++ +
T Consensus       258 ---~~~~~~~L~~L~l~~~-~l~~~~~---~~~~~~l~~l~~~~n~l~~~-----------~~~~~~~~l~~L~ls~n-~  318 (384)
T d2omza2         258 ---PLSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNENQLEDI-----------SPISNLKNLTYLTLYFN-N  318 (384)
T ss_dssp             ---GGTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSCCSCC-----------GGGGGCTTCSEEECCSS-C
T ss_pred             ---cccccccCCEeeccCc-ccCCCCc---cccccccccccccccccccc-----------cccchhcccCeEECCCC-C
Confidence               2236788888888774 3333322   1344445544  33333332           23556789999999886 4


Q ss_pred             ceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857          310 VQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       310 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c  385 (439)
                      ++.+..  +   ..+|+|++|++++| .++.++ .+..+++|++|+++++ +++++.|   +..+++|+.|++++.
T Consensus       319 l~~l~~--l---~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         319 ISDISP--V---SSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSCCGG--G---GGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCCE
T ss_pred             CCCCcc--c---ccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCCC
Confidence            555421  2   28999999999998 677766 4778999999999875 6888743   468899999999763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=2.7e-13  Score=123.97  Aligned_cols=247  Identities=13%  Similarity=0.086  Sum_probs=129.7

Q ss_pred             CCccEEeeccCCCcccccc-CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCC
Q 046857           68 PSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQA  146 (439)
Q Consensus        68 ~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~  146 (439)
                      +++++|+++++ +++.+|. .+..+++|++|+++++......         +..+..+++|+.|+++++. ++.++.   
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~---------~~~f~~l~~L~~L~l~~n~-l~~l~~---   96 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKIS---------PGAFAPLVKLERLYLSKNQ-LKELPE---   96 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBC---------TTTTTTCTTCCEEECCSSC-CSBCCS---
T ss_pred             CCCCEEECcCC-cCCCcChhHhhccccccccccccccccccc---------hhhhhCCCccCEecccCCc-cCcCcc---
Confidence            44555555553 4445543 3455555555555553222111         1223346666666666553 444332   


Q ss_pred             CCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccc
Q 046857          147 LPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKL  226 (439)
Q Consensus       147 l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  226 (439)
                         ..++.+..|....+ .+.. ++...+.....+..++...+..........       ....+ ++|+.+++.++. +
T Consensus        97 ---~~~~~l~~L~~~~n-~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~-------~~~~l-~~L~~l~l~~n~-l  162 (305)
T d1xkua_          97 ---KMPKTLQELRVHEN-EITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG-------AFQGM-KKLSYIRIADTN-I  162 (305)
T ss_dssp             ---SCCTTCCEEECCSS-CCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTT-------GGGGC-TTCCEEECCSSC-C
T ss_pred             ---chhhhhhhhhcccc-chhh-hhhhhhhccccccccccccccccccCCCcc-------ccccc-cccCccccccCC-c
Confidence               23556777777664 3433 344445555666666655442221111111       11113 667777776652 3


Q ss_pred             cccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecC
Q 046857          227 KRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSG  306 (439)
Q Consensus       227 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  306 (439)
                      ..++.     ..+++|+.|++.++.. ....+.                                .....+.++.|.+++
T Consensus       163 ~~l~~-----~~~~~L~~L~l~~n~~-~~~~~~--------------------------------~~~~~~~l~~L~~s~  204 (305)
T d1xkua_         163 TTIPQ-----GLPPSLTELHLDGNKI-TKVDAA--------------------------------SLKGLNNLAKLGLSF  204 (305)
T ss_dssp             CSCCS-----SCCTTCSEEECTTSCC-CEECTG--------------------------------GGTTCTTCCEEECCS
T ss_pred             cccCc-----ccCCccCEEECCCCcC-CCCChh--------------------------------Hhhcccccccccccc
Confidence            33322     1346777777766432 222111                                122445667777766


Q ss_pred             CCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccCh-----hHHhhccccceEE
Q 046857          307 LHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTL-----SASKNLVNLGRMK  381 (439)
Q Consensus       307 ~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~-----~~~~~l~~L~~L~  381 (439)
                      + .+..+....+.   .+++|++|+++++ .++.+|..+..+++|++|+++++ +++++...     +....+++|+.|+
T Consensus       205 n-~l~~~~~~~~~---~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~  278 (305)
T d1xkua_         205 N-SISAVDNGSLA---NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVS  278 (305)
T ss_dssp             S-CCCEECTTTGG---GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             c-ccccccccccc---ccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEE
Confidence            4 45555444333   6778888888777 56777777777888888888874 57765211     1123446677777


Q ss_pred             Ecccc
Q 046857          382 IVDCK  386 (439)
Q Consensus       382 l~~c~  386 (439)
                      +.+++
T Consensus       279 L~~N~  283 (305)
T d1xkua_         279 LFSNP  283 (305)
T ss_dssp             CCSSS
T ss_pred             CCCCc
Confidence            77663

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.3e-14  Score=131.28  Aligned_cols=66  Identities=21%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecccccc
Q 046857          123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSL  192 (439)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l  192 (439)
                      .+++|++|++.++..-......  +  ..+++|++|++++|.++++.....++..+++|++|++++|..+
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~--l--~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~  134 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNT--L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  134 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHH--H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             hCCCcccccccccCCCcHHHHH--H--hcCCCCcCccccccccccccccchhhHHHHhcccccccccccc
Confidence            4556666666655311111110  1  1356666777766666654322333455667777777766554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.49  E-value=4.7e-14  Score=129.61  Aligned_cols=253  Identities=15%  Similarity=0.124  Sum_probs=128.4

Q ss_pred             CccEEeeccCCCcc--ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCC
Q 046857           69 SLERVSMTRCPNMK--TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQA  146 (439)
Q Consensus        69 ~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~  146 (439)
                      ++++|++.++..-.  .+|..++.+++|++|+++++        +...+.+|..+.++++|++|+++++. +..+.... 
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~--------N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~-  120 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI--------NNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDF-  120 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE--------TTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGG-
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccc--------cccccccccccccccccchhhhcccc-cccccccc-
Confidence            45666666542211  35556666666666666531        01122355555556666666666543 33222211 


Q ss_pred             CCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccc-cceEecCCccc
Q 046857          147 LPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPR-LFSLTLIDLPK  225 (439)
Q Consensus       147 l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~  225 (439)
                        ...+++|+.+++..+. ....+|.. +..+++|++++++++.....++..  .       ..+ .+ ++.+.+.++.-
T Consensus       121 --~~~~~~L~~l~l~~N~-~~~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~~--~-------~~l-~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         121 --LSQIKTLVTLDFSYNA-LSGTLPPS-ISSLPNLVGITFDGNRISGAIPDS--Y-------GSF-SKLFTSMTISRNRL  186 (313)
T ss_dssp             --GGGCTTCCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSSCCEEECCGG--G-------GCC-CTTCCEEECCSSEE
T ss_pred             --ccchhhhccccccccc-ccccCchh-hccCcccceeeccccccccccccc--c-------ccc-cccccccccccccc
Confidence              1245666666666643 23334444 566677777777665433232220  0       011 33 24555554422


Q ss_pred             ccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeec
Q 046857          226 LKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLS  305 (439)
Q Consensus       226 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  305 (439)
                      ....+...   .. .....+++..+. .....+.                                ....+++++.+.+.
T Consensus       187 ~~~~~~~~---~~-l~~~~l~l~~~~-~~~~~~~--------------------------------~~~~~~~l~~l~~~  229 (313)
T d1ogqa_         187 TGKIPPTF---AN-LNLAFVDLSRNM-LEGDASV--------------------------------LFGSDKNTQKIHLA  229 (313)
T ss_dssp             EEECCGGG---GG-CCCSEEECCSSE-EEECCGG--------------------------------GCCTTSCCSEEECC
T ss_pred             cccccccc---cc-cccccccccccc-ccccccc--------------------------------cccccccccccccc
Confidence            11111111   01 122234443321 1111111                                12344566777666


Q ss_pred             CCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857          306 GLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC  385 (439)
Q Consensus       306 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c  385 (439)
                      ++.--..++  .+.   .+++|+.|+++++.....+|..+.++++|++|+++++ +++..+|.  .+.+++|+.+++.++
T Consensus       230 ~~~l~~~~~--~~~---~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~--~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         230 KNSLAFDLG--KVG---LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ--GGNLQRFDVSAYANN  301 (313)
T ss_dssp             SSEECCBGG--GCC---CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCC--STTGGGSCGGGTCSS
T ss_pred             ccccccccc--ccc---cccccccccCccCeecccCChHHhCCCCCCEEECcCC-cccccCCC--cccCCCCCHHHhCCC
Confidence            543211111  111   5678888888887655578888888899999999884 46643465  357788888888777


Q ss_pred             ccchh
Q 046857          386 KMMEE  390 (439)
Q Consensus       386 ~~l~~  390 (439)
                      +.+..
T Consensus       302 ~~l~g  306 (313)
T d1ogqa_         302 KCLCG  306 (313)
T ss_dssp             SEEES
T ss_pred             ccccC
Confidence            55543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.48  E-value=2.7e-12  Score=117.17  Aligned_cols=259  Identities=13%  Similarity=0.094  Sum_probs=166.5

Q ss_pred             cccc--cceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccc
Q 046857           19 YCEK--IEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHE   96 (439)
Q Consensus        19 ~c~~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~   96 (439)
                      +|.+  +..+|..+          .+++++|+++++ ++.+++.. .+..+++|++|++.+|......|..+..+++|++
T Consensus        16 ~C~~~~L~~lP~~l----------~~~l~~L~Ls~N-~i~~l~~~-~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_          16 QCSDLGLEKVPKDL----------PPDTALLDLQNN-KITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             ECTTSCCCSCCCSC----------CTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             EecCCCCCccCCCC----------CCCCCEEECcCC-cCCCcChh-HhhccccccccccccccccccchhhhhCCCccCE
Confidence            5543  55666542          468999999993 55555432 2667899999999997644434666888999999


Q ss_pred             eeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHh
Q 046857           97 VQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLR  176 (439)
Q Consensus        97 L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  176 (439)
                      |+++++.+.          .+|..  ....+..|.+.++. +..++...   ......+..+....+...........+.
T Consensus        84 L~l~~n~l~----------~l~~~--~~~~l~~L~~~~n~-l~~l~~~~---~~~~~~~~~l~~~~n~~~~~~~~~~~~~  147 (305)
T d1xkua_          84 LYLSKNQLK----------ELPEK--MPKTLQELRVHENE-ITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAFQ  147 (305)
T ss_dssp             EECCSSCCS----------BCCSS--CCTTCCEEECCSSC-CCBBCHHH---HTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred             ecccCCccC----------cCccc--hhhhhhhhhccccc-hhhhhhhh---hhccccccccccccccccccCCCccccc
Confidence            999985443          23222  24678888887654 43332211   1235566777776654333222333477


Q ss_pred             hccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCccee
Q 046857          177 CLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETF  256 (439)
Q Consensus       177 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  256 (439)
                      .+++|+.+++.++. +..++.            ..+++|+.|++.++......+...   ..++.++.|.+.++ .+..+
T Consensus       148 ~l~~L~~l~l~~n~-l~~l~~------------~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~l~~L~~s~n-~l~~~  210 (305)
T d1xkua_         148 GMKKLSYIRIADTN-ITTIPQ------------GLPPSLTELHLDGNKITKVDAASL---KGLNNLAKLGLSFN-SISAV  210 (305)
T ss_dssp             GCTTCCEEECCSSC-CCSCCS------------SCCTTCSEEECTTSCCCEECTGGG---TTCTTCCEEECCSS-CCCEE
T ss_pred             cccccCccccccCC-ccccCc------------ccCCccCEEECCCCcCCCCChhHh---hccccccccccccc-ccccc
Confidence            78899999998763 333221            134899999999876544443322   37788999999885 55555


Q ss_pred             ccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCC
Q 046857          257 ISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECS  336 (439)
Q Consensus       257 ~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~  336 (439)
                      ++.                                ....+++|++|+++++ .++.++. .+.   .+++|++|+++++ 
T Consensus       211 ~~~--------------------------------~~~~l~~L~~L~L~~N-~L~~lp~-~l~---~l~~L~~L~Ls~N-  252 (305)
T d1xkua_         211 DNG--------------------------------SLANTPHLRELHLNNN-KLVKVPG-GLA---DHKYIQVVYLHNN-  252 (305)
T ss_dssp             CTT--------------------------------TGGGSTTCCEEECCSS-CCSSCCT-TTT---TCSSCCEEECCSS-
T ss_pred             ccc--------------------------------cccccccceeeecccc-ccccccc-ccc---cccCCCEEECCCC-
Confidence            432                                1335678888888886 5666543 233   6788899998886 


Q ss_pred             CcccccCC-------CccCCCcceEEEccCC
Q 046857          337 KLQKLVPP-------SWHLENLWGLQVSKCH  360 (439)
Q Consensus       337 ~l~~l~~~-------~~~l~~L~~L~l~~c~  360 (439)
                      +++.++..       .....+|+.|++++++
T Consensus       253 ~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            46666532       2346789999998854

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=1.6e-13  Score=125.94  Aligned_cols=42  Identities=10%  Similarity=-0.017  Sum_probs=24.8

Q ss_pred             ccccCccceEeecCCCCce-eccccCCccccccCCcceEEeecCCCccc
Q 046857          293 KVAFPQLRKLRLSGLHKVQ-HLWKENDESNKVFANLERLEISECSKLQK  340 (439)
Q Consensus       293 ~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~L~~L~l~~c~~l~~  340 (439)
                      ...+++|++|+++++. ++ .++..     +.+++|+.+++++++.+..
T Consensus       264 l~~L~~L~~L~Ls~N~-l~g~iP~~-----~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNN-LCGEIPQG-----GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGGCTTCCEEECCSSE-EEEECCCS-----TTGGGSCGGGTCSSSEEES
T ss_pred             HhCCCCCCEEECcCCc-ccccCCCc-----ccCCCCCHHHhCCCccccC
Confidence            4466777777777753 33 34321     1566777777777665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.5e-14  Score=127.76  Aligned_cols=190  Identities=15%  Similarity=0.090  Sum_probs=96.5

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE  120 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~  120 (439)
                      ..+|++|+++++. +..-.....+..+++|++|++.+|..-...+..++++++|++|++++|...-+    ..+..+   
T Consensus        45 ~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd----~~l~~l---  116 (284)
T d2astb2          45 PFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE----FALQTL---  116 (284)
T ss_dssp             CBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH----HHHHHH---
T ss_pred             CCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc----cccchh---
Confidence            3467777777642 11110111144567777777777642223444456667777777766421100    111122   


Q ss_pred             hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc-ccccccchhHHhhccccceeeeccccccchhcccc
Q 046857          121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT-NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE  199 (439)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  199 (439)
                      ...+++|++|++++|..+.+..... .....+++|+.|++.+|. .+++.....++..+++|++|++++|..++.-.. .
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~-~  194 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-Q  194 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-G
T ss_pred             hHHHHhccccccccccccccccchh-hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh-h
Confidence            2246677777777766543211100 011234667777777653 344332333345667777777777765542210 1


Q ss_pred             ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857          200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                             .+..+ ++|++|++++|..+.......  ...+|+|+.|++.+|
T Consensus       195 -------~l~~~-~~L~~L~L~~C~~i~~~~l~~--L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 -------EFFQL-NYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             -------GGGGC-TTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTS
T ss_pred             -------hhccc-CcCCEEECCCCCCCChHHHHH--HhcCCCCCEEeeeCC
Confidence                   11123 677777777776654322111  235677777777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.33  E-value=5.6e-11  Score=110.08  Aligned_cols=135  Identities=16%  Similarity=0.097  Sum_probs=75.2

Q ss_pred             ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCc
Q 046857           10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIV   89 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~   89 (439)
                      .++++|+|+++. ++.+|+           ..++|++|++++ .++++++.     .+.+|++|++.++ .++.++.-  
T Consensus        38 ~~l~~LdLs~~~-L~~lp~-----------~~~~L~~L~Ls~-N~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~l--   96 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSLPE-----------LPPHLESLVASC-NSLTELPE-----LPQSLKSLLVDNN-NLKALSDL--   96 (353)
T ss_dssp             HTCSEEECTTSC-CSCCCS-----------CCTTCSEEECCS-SCCSSCCC-----CCTTCCEEECCSS-CCSCCCSC--
T ss_pred             cCCCEEEeCCCC-CCCCCC-----------CCCCCCEEECCC-CCCccccc-----chhhhhhhhhhhc-ccchhhhh--
Confidence            457788887764 555654           246788888876 34554421     2467888887774 45555421  


Q ss_pred             CccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc
Q 046857           90 STPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA  169 (439)
Q Consensus        90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~  169 (439)
                       .++|++|+++++.+.          .+|. ...+++|+.|++.++. +...+       ...+.+..+.+..+....  
T Consensus        97 -p~~L~~L~L~~n~l~----------~lp~-~~~l~~L~~L~l~~~~-~~~~~-------~~~~~l~~l~~~~~~~~~--  154 (353)
T d1jl5a_          97 -PPLLEYLGVSNNQLE----------KLPE-LQNSSFLKIIDVDNNS-LKKLP-------DLPPSLEFIAAGNNQLEE--  154 (353)
T ss_dssp             -CTTCCEEECCSSCCS----------SCCC-CTTCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSCCSS--
T ss_pred             -ccccccccccccccc----------cccc-hhhhccceeecccccc-ccccc-------cccccccchhhccccccc--
Confidence             235777887774332          2222 2346777888777554 22111       124456666665543222  


Q ss_pred             cchhHHhhccccceeeeccc
Q 046857          170 IPANLLRCLNNLARLEVRNC  189 (439)
Q Consensus       170 ~~~~~~~~l~~L~~L~l~~~  189 (439)
                       ... +..++.++.+.+.++
T Consensus       155 -~~~-l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         155 -LPE-LQNLPFLTAIYADNN  172 (353)
T ss_dssp             -CCC-CTTCTTCCEEECCSS
T ss_pred             -ccc-ccccccceecccccc
Confidence             111 445666777776654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=1e-11  Score=108.14  Aligned_cols=187  Identities=17%  Similarity=0.217  Sum_probs=84.1

Q ss_pred             ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857            8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG   87 (439)
Q Consensus         8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~   87 (439)
                      .+.+|+.|++.+|. ++.+. .+.        .+++|++|+++++ .+.++   ..+..+++|+++++.+| .++.++ .
T Consensus        39 ~l~~L~~L~l~~~~-i~~l~-~l~--------~l~~L~~L~ls~n-~i~~~---~~l~~l~~l~~l~~~~n-~~~~i~-~  102 (227)
T d1h6ua2          39 DLDGITTLSAFGTG-VTTIE-GVQ--------YLNNLIGLELKDN-QITDL---APLKNLTKITELELSGN-PLKNVS-A  102 (227)
T ss_dssp             HHHTCCEEECTTSC-CCCCT-TGG--------GCTTCCEEECCSS-CCCCC---GGGTTCCSCCEEECCSC-CCSCCG-G
T ss_pred             HcCCcCEEECCCCC-CCcch-hHh--------cCCCCcEeecCCc-eeecc---ccccccccccccccccc-cccccc-c
Confidence            34555666666553 33331 122        3556666666652 12221   22445566666666554 233332 2


Q ss_pred             CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857           88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS  167 (439)
Q Consensus        88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~  167 (439)
                      ++.+++|++++++++......           .+...+.++.+.+.++. +....     +...+++|+.|++.++. +.
T Consensus       103 l~~l~~L~~l~l~~~~~~~~~-----------~~~~~~~~~~l~~~~~~-~~~~~-----~~~~~~~L~~L~l~~n~-~~  164 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDVT-----------PLAGLSNLQVLYLDLNQ-ITNIS-----PLAGLTNLQYLSIGNAQ-VS  164 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG-----------GGTTCTTCCEEECCSSC-CCCCG-----GGGGCTTCCEEECCSSC-CC
T ss_pred             ccccccccccccccccccccc-----------hhccccchhhhhchhhh-hchhh-----hhccccccccccccccc-cc
Confidence            445555665555553322111           11124455555554333 11110     11235556666665542 22


Q ss_pred             cccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeE
Q 046857          168 SAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTI  247 (439)
Q Consensus       168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l  247 (439)
                      +. + . +.++++|++|+++++ .++.++.+..          + ++|++|+++++ .++.++    +..++++|+.|++
T Consensus       165 ~~-~-~-l~~l~~L~~L~Ls~n-~l~~l~~l~~----------l-~~L~~L~Ls~N-~lt~i~----~l~~l~~L~~L~l  224 (227)
T d1h6ua2         165 DL-T-P-LANLSKLTTLKADDN-KISDISPLAS----------L-PNLIEVHLKNN-QISDVS----PLANTSNLFIVTL  224 (227)
T ss_dssp             CC-G-G-GTTCTTCCEEECCSS-CCCCCGGGGG----------C-TTCCEEECTTS-CCCBCG----GGTTCTTCCEEEE
T ss_pred             cc-h-h-hcccccceecccCCC-ccCCChhhcC----------C-CCCCEEECcCC-cCCCCc----ccccCCCCCEEEe
Confidence            21 1 1 445566666666654 3433332211          2 56666666665 344442    1225556666655


Q ss_pred             e
Q 046857          248 E  248 (439)
Q Consensus       248 ~  248 (439)
                      +
T Consensus       225 s  225 (227)
T d1h6ua2         225 T  225 (227)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1e-11  Score=110.82  Aligned_cols=196  Identities=17%  Similarity=0.157  Sum_probs=134.4

Q ss_pred             cCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcC
Q 046857           11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVS   90 (439)
Q Consensus        11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~   90 (439)
                      ++.+.+-++ .++..+|..+          .+++++|+|++ .++..++.. .+..+++|++|+++++ .++.+|. ++.
T Consensus        11 ~~~~v~C~~-~~L~~iP~~l----------p~~l~~L~Ls~-N~i~~l~~~-~f~~l~~L~~L~L~~N-~l~~l~~-~~~   75 (266)
T d1p9ag_          11 SHLEVNCDK-RNLTALPPDL----------PKDTTILHLSE-NLLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQV-DGT   75 (266)
T ss_dssp             TCCEEECTT-SCCSSCCSCC----------CTTCCEEECTT-SCCSEEEGG-GGTTCTTCCEEECTTS-CCCEEEC-CSC
T ss_pred             CCeEEEccC-CCCCeeCcCc----------CcCCCEEECcC-CcCCCcCHH-Hhhccccccccccccc-ccccccc-ccc
Confidence            333443333 3466677642          25899999999 344444322 2567999999999996 6777775 467


Q ss_pred             ccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccccc
Q 046857           91 TPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI  170 (439)
Q Consensus        91 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~  170 (439)
                      +++|++|++++|.+..          .+..+..+++|+.|+++++. +..++...   ...+.+++.|.+.++ .++. +
T Consensus        76 l~~L~~L~Ls~N~l~~----------~~~~~~~l~~L~~L~l~~~~-~~~~~~~~---~~~l~~l~~L~l~~n-~l~~-l  139 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQS----------LPLLGQTLPALTVLDVSFNR-LTSLPLGA---LRGLGELQELYLKGN-ELKT-L  139 (266)
T ss_dssp             CTTCCEEECCSSCCSS----------CCCCTTTCTTCCEEECCSSC-CCCCCSST---TTTCTTCCEEECTTS-CCCC-C
T ss_pred             cccccccccccccccc----------cccccccccccccccccccc-cceeeccc---ccccccccccccccc-ccce-e
Confidence            9999999999865432          23334468899999999765 33333322   246788999999886 4555 4


Q ss_pred             chhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857          171 PANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       171 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                      +...+..+++|+.++++++ .+..++.        ..+..+ ++|++|+++++ .++.++....   .+++|+.|++.+.
T Consensus       140 ~~~~~~~l~~l~~l~l~~N-~l~~~~~--------~~~~~l-~~L~~L~Ls~N-~L~~lp~~~~---~~~~L~~L~L~~N  205 (266)
T d1p9ag_         140 PPGLLTPTPKLEKLSLANN-NLTELPA--------GLLNGL-ENLDTLLLQEN-SLYTIPKGFF---GSHLLPFAFLHGN  205 (266)
T ss_dssp             CTTTTTTCTTCCEEECTTS-CCSCCCT--------TTTTTC-TTCCEEECCSS-CCCCCCTTTT---TTCCCSEEECCSC
T ss_pred             ccccccccccchhcccccc-cccccCc--------cccccc-cccceeecccC-CCcccChhHC---CCCCCCEEEecCC
Confidence            6566788999999999976 4444332        111223 89999999987 4778876664   7889999999875


Q ss_pred             C
Q 046857          251 P  251 (439)
Q Consensus       251 ~  251 (439)
                      +
T Consensus       206 p  206 (266)
T d1p9ag_         206 P  206 (266)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.31  E-value=2.1e-10  Score=106.03  Aligned_cols=287  Identities=18%  Similarity=0.161  Sum_probs=149.7

Q ss_pred             CCCCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCc
Q 046857            2 ALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNM   81 (439)
Q Consensus         2 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l   81 (439)
                      ++|++  .++|++|++++| .++.+|..           +++|+.|++.+. +++.++.     -.+.|++|+++++ .+
T Consensus        52 ~lp~~--~~~L~~L~Ls~N-~l~~lp~~-----------~~~L~~L~l~~n-~l~~l~~-----lp~~L~~L~L~~n-~l  110 (353)
T d1jl5a_          52 SLPEL--PPHLESLVASCN-SLTELPEL-----------PQSLKSLLVDNN-NLKALSD-----LPPLLEYLGVSNN-QL  110 (353)
T ss_dssp             CCCSC--CTTCSEEECCSS-CCSSCCCC-----------CTTCCEEECCSS-CCSCCCS-----CCTTCCEEECCSS-CC
T ss_pred             CCCCC--CCCCCEEECCCC-CCcccccc-----------hhhhhhhhhhhc-ccchhhh-----hcccccccccccc-cc
Confidence            45653  579999999976 57777753           569999999983 3343321     1256999999996 67


Q ss_pred             cccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEec
Q 046857           82 KTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVD  161 (439)
Q Consensus        82 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~  161 (439)
                      ..+|. ++.+++|++|+++++.......             ....+..+.+.+...... . .    ...++.++.+.+.
T Consensus       111 ~~lp~-~~~l~~L~~L~l~~~~~~~~~~-------------~~~~l~~l~~~~~~~~~~-~-~----l~~l~~l~~L~l~  170 (353)
T d1jl5a_         111 EKLPE-LQNSSFLKIIDVDNNSLKKLPD-------------LPPSLEFIAAGNNQLEEL-P-E----LQNLPFLTAIYAD  170 (353)
T ss_dssp             SSCCC-CTTCTTCCEEECCSSCCSCCCC-------------CCTTCCEEECCSSCCSSC-C-C----CTTCTTCCEEECC
T ss_pred             ccccc-hhhhccceeecccccccccccc-------------ccccccchhhcccccccc-c-c----ccccccceecccc
Confidence            78875 5789999999998855432221             245566677664432221 1 1    1346778888877


Q ss_pred             cccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCC
Q 046857          162 YCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPM  241 (439)
Q Consensus       162 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  241 (439)
                      .+....  ++..    ....+.+.... ..+..++...          .+ +.|+.+.+.++. ...++.      ..++
T Consensus       171 ~n~~~~--~~~~----~~~~~~l~~~~-~~~~~~~~~~----------~l-~~L~~l~l~~n~-~~~~~~------~~~~  225 (353)
T d1jl5a_         171 NNSLKK--LPDL----PLSLESIVAGN-NILEELPELQ----------NL-PFLTTIYADNNL-LKTLPD------LPPS  225 (353)
T ss_dssp             SSCCSS--CCCC----CTTCCEEECCS-SCCSSCCCCT----------TC-TTCCEEECCSSC-CSSCCS------CCTT
T ss_pred             cccccc--cccc----ccccccccccc-cccccccccc----------cc-cccccccccccc-cccccc------cccc
Confidence            653222  2211    12223333332 2222222211          12 677777777653 222211      2245


Q ss_pred             ccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCc
Q 046857          242 LWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDE  319 (439)
Q Consensus       242 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~  319 (439)
                      +..+.+.+.. +...+.     ....+...  ....+..+             ...........+... .+..+.     
T Consensus       226 l~~~~~~~~~-~~~~~~-----~~~~l~~~~~~~~~~~~l-------------~~l~~~~~~~~~~~~-~~~~~~-----  280 (353)
T d1jl5a_         226 LEALNVRDNY-LTDLPE-----LPQSLTFLDVSENIFSGL-------------SELPPNLYYLNASSN-EIRSLC-----  280 (353)
T ss_dssp             CCEEECCSSC-CSCCCC-----CCTTCCEEECCSSCCSEE-------------SCCCTTCCEEECCSS-CCSEEC-----
T ss_pred             cccccccccc-cccccc-----cccccccccccccccccc-------------ccccchhcccccccC-cccccc-----
Confidence            5555555432 111110     00111100  00000000             000011122222211 111111     


Q ss_pred             cccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhc
Q 046857          320 SNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEII  392 (439)
Q Consensus       320 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~  392 (439)
                        ..+++|++|++++| .++.+|.   .+++|+.|++++| +++++ |.    .+++|+.|++++| .++.++
T Consensus       281 --~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N-~L~~l-~~----~~~~L~~L~L~~N-~L~~lp  340 (353)
T d1jl5a_         281 --DLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEV-PE----LPQNLKQLHVEYN-PLREFP  340 (353)
T ss_dssp             --CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCC-CC----CCTTCCEEECCSS-CCSSCC
T ss_pred             --ccCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCC-cCCcc-cc----ccCCCCEEECcCC-cCCCCC
Confidence              14567888888776 4666664   3577888888765 57765 43    2457888888887 366654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=7.2e-11  Score=106.30  Aligned_cols=82  Identities=18%  Similarity=0.139  Sum_probs=44.9

Q ss_pred             CccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccc
Q 046857          297 PQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVN  376 (439)
Q Consensus       297 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~  376 (439)
                      ++|+.|++.++ .++.+....+.   .+++|+++.++++......|..+..+++|++|+++++ ++..+ +...++.+++
T Consensus       153 ~~L~~L~l~~N-~l~~l~~~~f~---~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~-~~~~~~~~~~  226 (284)
T d1ozna_         153 GNLTHLFLHGN-RISSVPERAFR---GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLRA  226 (284)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCTT
T ss_pred             cchhhcccccC-cccccchhhhc---cccccchhhhhhccccccChhHhhhhhhccccccccc-ccccc-cccccccccc
Confidence            34555555543 34444333333   4566666666665433333455566667777777663 45554 4444556667


Q ss_pred             cceEEEcc
Q 046857          377 LGRMKIVD  384 (439)
Q Consensus       377 L~~L~l~~  384 (439)
                      |+.|++++
T Consensus       227 L~~L~l~~  234 (284)
T d1ozna_         227 LQYLRLND  234 (284)
T ss_dssp             CCEEECCS
T ss_pred             cCEEEecC
Confidence            77777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=6.8e-11  Score=102.72  Aligned_cols=55  Identities=20%  Similarity=0.259  Sum_probs=28.8

Q ss_pred             ccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEc
Q 046857          323 VFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV  383 (439)
Q Consensus       323 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~  383 (439)
                      .+++|++|++++| .+++++. +.++++|++|++++| +++++ +.  ++.+++|+.|+++
T Consensus       171 ~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i-~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         171 NLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDV-SP--LANTSNLFIVTLT  225 (227)
T ss_dssp             TCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBC-GG--GTTCTTCCEEEEE
T ss_pred             ccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCC-cc--cccCCCCCEEEee
Confidence            4555666666555 3444432 445566666666654 35554 21  3455566665554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-11  Score=107.73  Aligned_cols=175  Identities=20%  Similarity=0.151  Sum_probs=128.7

Q ss_pred             ccCceEEEccccccceecc-ccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCC
Q 046857           10 NSLVNLNVSYCEKIEEIIG-HVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGI   88 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~   88 (439)
                      +++++|+|++|. +..++. .+.        .+++|++|+++++ ++..+   +.+..+++|++|+++++ +++..+..+
T Consensus        31 ~~l~~L~Ls~N~-i~~l~~~~f~--------~l~~L~~L~L~~N-~l~~l---~~~~~l~~L~~L~Ls~N-~l~~~~~~~   96 (266)
T d1p9ag_          31 KDTTILHLSENL-LYTFSLATLM--------PYTRLTQLNLDRA-ELTKL---QVDGTLPVLGTLDLSHN-QLQSLPLLG   96 (266)
T ss_dssp             TTCCEEECTTSC-CSEEEGGGGT--------TCTTCCEEECTTS-CCCEE---ECCSCCTTCCEEECCSS-CCSSCCCCT
T ss_pred             cCCCEEECcCCc-CCCcCHHHhh--------ccccccccccccc-ccccc---ccccccccccccccccc-ccccccccc
Confidence            689999999986 555553 333        5889999999993 45554   33567999999999996 677788888


Q ss_pred             cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccc
Q 046857           89 VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSS  168 (439)
Q Consensus        89 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~  168 (439)
                      ..+++|+.|+++++.......         .....+.+++.|++.++. +..++...   ...+++|+.++++++ +++.
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~---------~~~~~l~~l~~L~l~~n~-l~~l~~~~---~~~l~~l~~l~l~~N-~l~~  162 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPL---------GALRGLGELQELYLKGNE-LKTLPPGL---LTPTPKLEKLSLANN-NLTE  162 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCS---------STTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECTTS-CCSC
T ss_pred             ccccccccccccccccceeec---------cccccccccccccccccc-cceecccc---ccccccchhcccccc-cccc
Confidence            999999999999855332211         123357889999999664 55555433   235789999999886 5766


Q ss_pred             ccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857          169 AIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       169 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                       ++...+..+++|++|+++++ .++.++.  +.       ... ++|+.|+|.+.+
T Consensus       163 -~~~~~~~~l~~L~~L~Ls~N-~L~~lp~--~~-------~~~-~~L~~L~L~~Np  206 (266)
T d1p9ag_         163 -LPAGLLNGLENLDTLLLQEN-SLYTIPK--GF-------FGS-HLLPFAFLHGNP  206 (266)
T ss_dssp             -CCTTTTTTCTTCCEEECCSS-CCCCCCT--TT-------TTT-CCCSEEECCSCC
T ss_pred             -cCccccccccccceeecccC-CCcccCh--hH-------CCC-CCCCEEEecCCC
Confidence             45555888999999999986 4666643  11       123 899999999764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7e-11  Score=106.39  Aligned_cols=203  Identities=18%  Similarity=0.153  Sum_probs=129.6

Q ss_pred             CCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccC
Q 046857          153 NYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNF  232 (439)
Q Consensus       153 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  232 (439)
                      +++++|+++++ +++. +|...+.++++|++|+++++ .+..+....        .. ..+.++.+.......+..+...
T Consensus        32 ~~~~~L~Ls~N-~i~~-i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~--------~~-~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          32 AASQRIFLHGN-RISH-VPAASFRACRNLTILWLHSN-VLARIDAAA--------FT-GLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             TTCSEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSS-CCCEECTTT--------TT-TCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCCCEEECcCC-cCCC-CCHHHhhccccccccccccc-ccccccccc--------cc-ccccccccccccccccccccch
Confidence            45677777764 4554 34444667777777777754 333322100        01 1256666666555555554332


Q ss_pred             CCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCcee
Q 046857          233 TGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQH  312 (439)
Q Consensus       233 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  312 (439)
                      .  ..++++|+.+++..+. +..+...                                .....++|+.+++.++ .++.
T Consensus       100 ~--~~~l~~L~~L~l~~n~-~~~~~~~--------------------------------~~~~~~~L~~l~l~~N-~l~~  143 (284)
T d1ozna_         100 T--FHGLGRLHTLHLDRCG-LQELGPG--------------------------------LFRGLAALQYLYLQDN-ALQA  143 (284)
T ss_dssp             T--TTTCTTCCEEECTTSC-CCCCCTT--------------------------------TTTTCTTCCEEECCSS-CCCC
T ss_pred             h--hcccccCCEEecCCcc-ccccccc--------------------------------ccchhcccchhhhccc-cccc
Confidence            2  2366778888777753 2222111                                1334567888888774 4666


Q ss_pred             ccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhh
Q 046857          313 LWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEI  391 (439)
Q Consensus       313 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~  391 (439)
                      ++.+.+.   .+++|+.|+++++ .++.+++. +..+++|+++++.++ +++.+.|. .+..+++|+.|+++++ .+..+
T Consensus       144 i~~~~f~---~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N-~i~~~  216 (284)
T d1ozna_         144 LPDDTFR---DLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVHPH-AFRDLGRLMTLYLFAN-NLSAL  216 (284)
T ss_dssp             CCTTTTT---TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCC
T ss_pred             cChhHhc---cccchhhcccccC-cccccchhhhccccccchhhhhhc-cccccChh-Hhhhhhhccccccccc-ccccc
Confidence            6544343   6789999999987 56777654 458999999999985 57777565 4678899999999998 55555


Q ss_pred             ccccccccCCCceEeccccEEecCCC
Q 046857          392 IQSQVGEETEDCIVFGKLRYLELDCL  417 (439)
Q Consensus       392 ~~~~~~~~~~~~~~l~~L~~l~l~~c  417 (439)
                      ...       .+..+++|+++++++.
T Consensus       217 ~~~-------~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         217 PTE-------ALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CHH-------HHTTCTTCCEEECCSS
T ss_pred             ccc-------ccccccccCEEEecCC
Confidence            432       4567889999999873

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=5.3e-11  Score=102.08  Aligned_cols=165  Identities=13%  Similarity=0.198  Sum_probs=111.4

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE  120 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~  120 (439)
                      +.+|+.|+++++ .++++   ..+..+++|++|++++| +++.++. ++.+++|++|++++|.++          .++ .
T Consensus        45 L~~L~~L~l~~~-~i~~l---~~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~i~----------~l~-~  107 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVK----------DLS-S  107 (210)
T ss_dssp             HHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC----------CGG-G
T ss_pred             hcCccEEECcCC-CCCCc---hhHhhCCCCCEEeCCCc-cccCccc-cccCcccccccccccccc----------ccc-c
Confidence            668888888883 33433   33667889999999886 5666653 577888999998885432          233 3


Q ss_pred             hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccc
Q 046857          121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEE  200 (439)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  200 (439)
                      +..+++|+.|++.++. ...++.     ...+++++.+.+.++ .+++. + . ...+++|+++++.++ .+..+..+. 
T Consensus       108 l~~l~~L~~L~l~~~~-~~~~~~-----l~~l~~l~~l~~~~n-~l~~~-~-~-~~~l~~L~~l~l~~n-~l~~i~~l~-  175 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNG-ISDING-----LVHLPQLESLYLGNN-KITDI-T-V-LSRLTKLDTLSLEDN-QISDIVPLA-  175 (210)
T ss_dssp             GTTCTTCCEEECTTSC-CCCCGG-----GGGCTTCCEEECCSS-CCCCC-G-G-GGGCTTCSEEECCSS-CCCCCGGGT-
T ss_pred             cccccccccccccccc-cccccc-----ccccccccccccccc-ccccc-c-c-ccccccccccccccc-ccccccccc-
Confidence            4567889999998765 333221     135788889988775 45432 2 2 567888999999876 444443322 


Q ss_pred             cccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEec
Q 046857          201 LNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN  249 (439)
Q Consensus       201 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~  249 (439)
                               .+ ++|++|+++++ .++.++.    ...+++|+.|++++
T Consensus       176 ---------~l-~~L~~L~Ls~N-~i~~l~~----l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         176 ---------GL-TKLQNLYLSKN-HISDLRA----LAGLKNLDVLELFS  209 (210)
T ss_dssp             ---------TC-TTCCEEECCSS-CCCBCGG----GTTCTTCSEEEEEE
T ss_pred             ---------CC-CCCCEEECCCC-CCCCChh----hcCCCCCCEEEccC
Confidence                     13 88999999887 4666542    34789999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=1.2e-10  Score=98.93  Aligned_cols=161  Identities=17%  Similarity=0.193  Sum_probs=106.1

Q ss_pred             ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857           41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE  120 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~  120 (439)
                      ++++++|+++++ +++++   ..+..+++|++|++++| +++.++. ++.+++|++|+++++....          ++ .
T Consensus        39 l~~l~~L~l~~~-~i~~l---~~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~----------~~-~  101 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSI---DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIAD----------IT-P  101 (199)
T ss_dssp             HTTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCC----------CG-G
T ss_pred             hcCCCEEECCCC-CCCCc---cccccCCCcCcCccccc-cccCccc-ccCCccccccccccccccc----------cc-c
Confidence            678888888883 34444   33667888888888886 5666653 7788888888888744322          11 2


Q ss_pred             hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccc
Q 046857          121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEE  200 (439)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  200 (439)
                      +.++++|+.|+++++..... ..     ...+++|+.|+++++. +.. ++ . +..+++|++|++.+| .+..+.++. 
T Consensus       102 l~~l~~L~~L~l~~~~~~~~-~~-----~~~l~~L~~L~l~~n~-l~~-~~-~-l~~~~~L~~L~l~~n-~l~~l~~l~-  169 (199)
T d2omxa2         102 LANLTNLTGLTLFNNQITDI-DP-----LKNLTNLNRLELSSNT-ISD-IS-A-LSGLTSLQQLNFSSN-QVTDLKPLA-  169 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCC-GG-----GTTCTTCSEEECCSSC-CCC-CG-G-GTTCTTCSEEECCSS-CCCCCGGGT-
T ss_pred             cccccccccccccccccccc-cc-----cchhhhhHHhhhhhhh-hcc-cc-c-ccccccccccccccc-cccCCcccc-
Confidence            44578888888886653322 11     1357889999988763 543 23 2 667888899988876 444443322 


Q ss_pred             cccccCcccccccccceEecCCcccccccccCCCcccCCCCccEE
Q 046857          201 LNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSL  245 (439)
Q Consensus       201 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  245 (439)
                               .+ ++|++|+++++ .++.++.    ...+++|+.|
T Consensus       170 ---------~l-~~L~~L~ls~N-~i~~i~~----l~~L~~L~~L  199 (199)
T d2omxa2         170 ---------NL-TTLERLDISSN-KVSDISV----LAKLTNLESL  199 (199)
T ss_dssp             ---------TC-TTCCEEECCSS-CCCCCGG----GGGCTTCSEE
T ss_pred             ---------CC-CCCCEEECCCC-CCCCCcc----ccCCCCCCcC
Confidence                     13 88999999887 4666532    2367888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=1.6e-10  Score=98.13  Aligned_cols=163  Identities=14%  Similarity=0.196  Sum_probs=110.7

Q ss_pred             cCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCC
Q 046857           65 LEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHG  144 (439)
Q Consensus        65 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~  144 (439)
                      ..++++++|++.+| .++.+ .+++.+++|++|++++|.++          .++ .+.++++|++|+++++. +..++. 
T Consensus        37 ~~l~~l~~L~l~~~-~i~~l-~~l~~l~nL~~L~Ls~N~l~----------~~~-~l~~l~~L~~L~l~~n~-~~~~~~-  101 (199)
T d2omxa2          37 TDLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLT----------DIT-PLKNLTKLVDILMNNNQ-IADITP-  101 (199)
T ss_dssp             HHHTTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSCCC----------CCG-GGTTCTTCCEEECCSSC-CCCCGG-
T ss_pred             HHhcCCCEEECCCC-CCCCc-cccccCCCcCcCcccccccc----------Ccc-cccCCcccccccccccc-cccccc-
Confidence            35788999999996 46666 35778999999999985433          222 24568899999998765 333332 


Q ss_pred             CCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857          145 QALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP  224 (439)
Q Consensus       145 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (439)
                          ...+++|+.|++.++....  .+ . +..+++|+.|+++++ .+..++.+.   .       . ++|+.|++.++ 
T Consensus       102 ----l~~l~~L~~L~l~~~~~~~--~~-~-~~~l~~L~~L~l~~n-~l~~~~~l~---~-------~-~~L~~L~l~~n-  160 (199)
T d2omxa2         102 ----LANLTNLTGLTLFNNQITD--ID-P-LKNLTNLNRLELSSN-TISDISALS---G-------L-TSLQQLNFSSN-  160 (199)
T ss_dssp             ----GTTCTTCSEEECCSSCCCC--CG-G-GTTCTTCSEEECCSS-CCCCCGGGT---T-------C-TTCSEEECCSS-
T ss_pred             ----ccccccccccccccccccc--cc-c-cchhhhhHHhhhhhh-hhccccccc---c-------c-ccccccccccc-
Confidence                1368899999998875433  22 2 667899999999876 344433222   1       3 88999999887 


Q ss_pred             cccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC
Q 046857          225 KLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP  271 (439)
Q Consensus       225 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  271 (439)
                      .++.++    ...++++|+.|+++++ .+++++.   ...+++|++|
T Consensus       161 ~l~~l~----~l~~l~~L~~L~ls~N-~i~~i~~---l~~L~~L~~L  199 (199)
T d2omxa2         161 QVTDLK----PLANLTTLERLDISSN-KVSDISV---LAKLTNLESL  199 (199)
T ss_dssp             CCCCCG----GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred             cccCCc----cccCCCCCCEEECCCC-CCCCCcc---ccCCCCCCcC
Confidence            454443    2347899999999986 4666532   3567777754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=1.9e-10  Score=98.48  Aligned_cols=162  Identities=17%  Similarity=0.251  Sum_probs=90.4

Q ss_pred             CCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCC
Q 046857           66 EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQ  145 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~  145 (439)
                      ++.+|++|++.+| .++.++ ++..+++|++|+++++.++          .++ .+..+++|+.|+++++. +++++.. 
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~i~----------~l~-~~~~l~~L~~L~l~~n~-i~~l~~l-  108 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLT----------DIK-PLANLKNLGWLFLDENK-VKDLSSL-  108 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCC----------CCG-GGTTCTTCCEEECCSSC-CCCGGGG-
T ss_pred             HhcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCcccc----------Ccc-ccccCcccccccccccc-ccccccc-
Confidence            3567777777775 444443 4566777777777774332          111 12346777777777553 5544321 


Q ss_pred             CCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccc
Q 046857          146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPK  225 (439)
Q Consensus       146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  225 (439)
                          ..+++|+.|++.++. +.. ++ . +..+++++.+++.++ .+.......          .+ ++|+.+++.++ .
T Consensus       109 ----~~l~~L~~L~l~~~~-~~~-~~-~-l~~l~~l~~l~~~~n-~l~~~~~~~----------~l-~~L~~l~l~~n-~  167 (210)
T d1h6ta2         109 ----KDLKKLKSLSLEHNG-ISD-IN-G-LVHLPQLESLYLGNN-KITDITVLS----------RL-TKLDTLSLEDN-Q  167 (210)
T ss_dssp             ----TTCTTCCEEECTTSC-CCC-CG-G-GGGCTTCCEEECCSS-CCCCCGGGG----------GC-TTCSEEECCSS-C
T ss_pred             ----ccccccccccccccc-ccc-cc-c-ccccccccccccccc-ccccccccc----------cc-ccccccccccc-c
Confidence                246777777777664 222 22 2 556677777777654 232222111          12 67777777766 3


Q ss_pred             ccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC
Q 046857          226 LKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP  271 (439)
Q Consensus       226 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  271 (439)
                      +..+.    ....+++|+.|+++++ .+++++.   +..+++|+.|
T Consensus       168 l~~i~----~l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L  205 (210)
T d1h6ta2         168 ISDIV----PLAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVL  205 (210)
T ss_dssp             CCCCG----GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEE
T ss_pred             ccccc----cccCCCCCCEEECCCC-CCCCChh---hcCCCCCCEE
Confidence            43332    1236677777777775 4555431   2455666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.5e-10  Score=99.97  Aligned_cols=85  Identities=20%  Similarity=0.277  Sum_probs=44.4

Q ss_pred             CCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccC
Q 046857          153 NYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNF  232 (439)
Q Consensus       153 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  232 (439)
                      +++++|+++++ .++. ++...+.++++|++|+++++.....++. ..+.       .+ ++++++.+..+..+..+...
T Consensus        29 ~~l~~L~Ls~n-~i~~-l~~~~f~~l~~L~~L~ls~n~~~~~i~~-~~f~-------~l-~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFS-------NL-PKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             SCCSEEEEESC-CCCE-ECTTTTTTCTTCCEEEEESCTTCCEECS-SSEE-------SC-TTCCEEEEECCTTCCEECTT
T ss_pred             CCCCEEECcCC-cCCc-cChhHhhccchhhhhhhccccccceeec-cccc-------cc-cccccccccccccccccccc
Confidence            45666776664 3443 3444456666777777766543322211 1111       12 56666666555555444332


Q ss_pred             CCcccCCCCccEEeEecC
Q 046857          233 TGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       233 ~~~~~~~~~L~~L~l~~c  250 (439)
                      .  ...+++|+.+++.++
T Consensus        98 ~--~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          98 A--FQNLPNLQYLLISNT  113 (242)
T ss_dssp             S--EECCTTCCEEEEESC
T ss_pred             c--ccccccccccccchh
Confidence            2  235677777777764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.4e-10  Score=96.89  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=28.1

Q ss_pred             CCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEc
Q 046857          325 ANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV  383 (439)
Q Consensus       325 ~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~  383 (439)
                      ++++++...++..++.+|.. +.++++|++|+++++ +++.+ |...+..+++|+.+++.
T Consensus       176 ~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSL-PSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCC-CSSSCTTCCEEESSSEE
T ss_pred             hhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCcc-CHHHHcCCcccccCcCC
Confidence            34444444444455555543 245666666666653 35554 33333444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1e-09  Score=89.51  Aligned_cols=59  Identities=15%  Similarity=0.153  Sum_probs=29.5

Q ss_pred             CCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccc---hhHHhhccccceeeec
Q 046857          124 FRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIP---ANLLRCLNNLARLEVR  187 (439)
Q Consensus       124 ~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~  187 (439)
                      +++|+.|+++++. +..++.-.  ....+++|++|++.+++ ++. .+   ...+..+++|+.||-.
T Consensus        86 l~~L~~L~L~~N~-i~~~~~l~--~l~~l~~L~~L~l~~N~-i~~-~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          86 LPDLTELILTNNS-LVELGDLD--PLASLKSLTYLCILRNP-VTN-KKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CTTCCEEECCSCC-CCCGGGGG--GGGGCTTCCEEECCSSG-GGG-STTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccceecccc-cccccccc--ccccccccchhhcCCCc-ccc-ccchHHHHHHHCCCcCeeCCC
Confidence            4555555555443 32221100  01246677777777653 332 22   2246667788877644

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=1.1e-08  Score=79.23  Aligned_cols=101  Identities=13%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             ceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCcc
Q 046857           13 VNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTP   92 (439)
Q Consensus        13 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~   92 (439)
                      |.|+|++|. +..++. ++        .+++|++|++++ .++.+++.  .+..+++|+.|+++++ .++.+| +++.++
T Consensus         1 R~L~Ls~n~-l~~l~~-l~--------~l~~L~~L~ls~-N~l~~lp~--~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~   65 (124)
T d1dcea3           1 RVLHLAHKD-LTVLCH-LE--------QLLLVTHLDLSH-NRLRALPP--ALAALRCLEVLQASDN-ALENVD-GVANLP   65 (124)
T ss_dssp             SEEECTTSC-CSSCCC-GG--------GGTTCCEEECCS-SCCCCCCG--GGGGCTTCCEEECCSS-CCCCCG-GGTTCS
T ss_pred             CEEEcCCCC-CCCCcc-cc--------cCCCCCEEECCC-CccCcchh--hhhhhhcccccccccc-cccccC-cccccc
Confidence            456666664 344332 22        366777777776 34444432  2556777777777774 566664 366777


Q ss_pred             CccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC
Q 046857           93 KLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP  136 (439)
Q Consensus        93 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  136 (439)
                      +|++|+++++.+....++        ..+..+++|+.|++++++
T Consensus        66 ~L~~L~l~~N~i~~~~~~--------~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          66 RLQELLLCNNRLQQSAAI--------QPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             SCCEEECCSSCCCSSSTT--------GGGGGCTTCCEEECTTSG
T ss_pred             ccCeEECCCCccCCCCCc--------hhhcCCCCCCEEECCCCc
Confidence            777777777443322111        123346777777777654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=1.7e-08  Score=78.06  Aligned_cols=100  Identities=13%  Similarity=0.110  Sum_probs=59.8

Q ss_pred             ceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCC
Q 046857           45 KVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGF  124 (439)
Q Consensus        45 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~  124 (439)
                      |+|++++    +++...+.+..+++|++|+++++ .++.+|..++.+++|+.|++++|.++          .++ ++..+
T Consensus         1 R~L~Ls~----n~l~~l~~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~----------~l~-~~~~l   64 (124)
T d1dcea3           1 RVLHLAH----KDLTVLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALE----------NVD-GVANL   64 (124)
T ss_dssp             SEEECTT----SCCSSCCCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC----------CCG-GGTTC
T ss_pred             CEEEcCC----CCCCCCcccccCCCCCEEECCCC-ccCcchhhhhhhhccccccccccccc----------ccC-ccccc
Confidence            5677777    33333344677888888888884 67778777777888888888774332          222 24456


Q ss_pred             CCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857          125 RDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC  163 (439)
Q Consensus       125 ~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~  163 (439)
                      ++|+.|+++++. +..++.-.  ....+++|+.|++++.
T Consensus        65 ~~L~~L~l~~N~-i~~~~~~~--~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          65 PRLQELLLCNNR-LQQSAAIQ--PLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             SSCCEEECCSSC-CCSSSTTG--GGGGCTTCCEEECTTS
T ss_pred             cccCeEECCCCc-cCCCCCch--hhcCCCCCCEEECCCC
Confidence            677777776543 33322110  0124566666666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.9e-08  Score=81.74  Aligned_cols=37  Identities=0%  Similarity=-0.059  Sum_probs=21.6

Q ss_pred             ccCCCCccEEeeccCCCccccccCCcCccCccceeecC
Q 046857           64 TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEG  101 (439)
Q Consensus        64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  101 (439)
                      +.+..+|++|+++++ ++..++..+..+++|+.|++++
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~   50 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSD   50 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCS
T ss_pred             ccCcCcCcEEECCCC-CCCccCccccccccCCEEECCC
Confidence            345567777777774 4555554334455555555555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.50  E-value=2.6e-07  Score=77.20  Aligned_cols=107  Identities=14%  Similarity=0.211  Sum_probs=51.3

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh-h
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE-E  120 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~  120 (439)
                      +++++|++++ .++........+..+++|++|++.++......+..+..+++|++|+++++.+.          .++. .
T Consensus        29 ~~l~~L~Ls~-N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~----------~l~~~~   97 (192)
T d1w8aa_          29 LHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK----------EISNKM   97 (192)
T ss_dssp             TTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC----------EECSSS
T ss_pred             CCCCEEEeCC-CCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc----------ccCHHH
Confidence            4667777776 22222222222455667777777664333233344555666666666663322          2211 1


Q ss_pred             hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857          121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC  163 (439)
Q Consensus       121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~  163 (439)
                      +.++++|++|+++++. +..++.+. +  ..+++|++|++.+.
T Consensus        98 F~~l~~L~~L~L~~N~-l~~i~~~~-f--~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDNQ-ISCVMPGS-F--EHLNSLTSLNLASN  136 (192)
T ss_dssp             STTCTTCCEEECCSSC-CCEECTTS-S--TTCTTCCEEECTTC
T ss_pred             HhCCCcccccccCCcc-ccccCHHH-h--cCCccccccccccc
Confidence            2345555555555432 44444332 1  23455555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.46  E-value=1.6e-07  Score=78.58  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhh
Q 046857          295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKN  373 (439)
Q Consensus       295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~  373 (439)
                      .+++|+.|+++++ .+..+..+.+.   .+++|++|+++++ +++.+++. +.++++|++|++++ ++++.+ +...+..
T Consensus        52 ~l~~L~~L~L~~N-~i~~~~~~~~~---~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i-~~~~f~~  124 (192)
T d1w8aa_          52 RLPHLVKLELKRN-QLTGIEPNAFE---GASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYD-NQISCV-MPGSFEH  124 (192)
T ss_dssp             GCTTCCEEECCSS-CCCCBCTTTTT---TCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCS-SCCCEE-CTTSSTT
T ss_pred             CCceEeeeecccc-ccccccccccc---cccccceeeeccc-cccccCHHHHhCCCcccccccCC-cccccc-CHHHhcC
Confidence            4456666666553 23333333232   4556666666555 44455443 34566666666665 345555 3333445


Q ss_pred             ccccceEEEccc
Q 046857          374 LVNLGRMKIVDC  385 (439)
Q Consensus       374 l~~L~~L~l~~c  385 (439)
                      +++|+.|++.+.
T Consensus       125 l~~L~~l~L~~N  136 (192)
T d1w8aa_         125 LNSLTSLNLASN  136 (192)
T ss_dssp             CTTCCEEECTTC
T ss_pred             Cccccccccccc
Confidence            566666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=6.6e-09  Score=99.23  Aligned_cols=112  Identities=14%  Similarity=0.088  Sum_probs=67.3

Q ss_pred             ccCceEEEccccccceec-cccccccccccccccccceeecccccccccccc---ccCccCCCCccEEeeccCCCcc---
Q 046857           10 NSLVNLNVSYCEKIEEII-GHVGEEVKENRIAFSNLKVLILDYLPRLTSFCL---ENYTLEFPSLERVSMTRCPNMK---   82 (439)
Q Consensus        10 ~~L~~L~l~~c~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~---   82 (439)
                      ++|+.|+++++..-..-+ ..+.        .++++++|+|.+|. +.+-..   ...+..+++|++|+++++ .++   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~--------~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~   71 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLP--------LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVG   71 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHH--------HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHH--------hCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHH
Confidence            578888887665322211 1111        47788899998863 332111   111456888999999886 443   


Q ss_pred             --ccccCCcC-ccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC
Q 046857           83 --TFSQGIVS-TPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP  136 (439)
Q Consensus        83 --~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  136 (439)
                        .+...+.. .++|++|++++|.++.     .....++..+..+++|++|+++++.
T Consensus        72 ~~~l~~~l~~~~~~L~~L~L~~n~it~-----~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          72 VHCVLQGLQTPSCKIQKLSLQNCCLTG-----AGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHTTCSTTCCCCEEECTTSCCBG-----GGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHHhcCCCCCCEEECCCCCccc-----cccccccchhhcccccccccccccc
Confidence              23333322 3578889888865441     2334455666678889999988654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.34  E-value=2.9e-09  Score=89.84  Aligned_cols=34  Identities=9%  Similarity=0.201  Sum_probs=15.5

Q ss_pred             CCCCccEEeeccCCCccccccCCcCccCccceeecC
Q 046857           66 EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEG  101 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  101 (439)
                      .+++|++|+++++ .++.++ ++..+++|++|++++
T Consensus        46 ~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~   79 (198)
T d1m9la_          46 TLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGR   79 (198)
T ss_dssp             HTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCE
T ss_pred             cccccceeECccc-CCCCcc-cccCCccccChhhcc
Confidence            4455555555543 333332 234444444444444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.32  E-value=8.3e-09  Score=87.00  Aligned_cols=126  Identities=12%  Similarity=0.061  Sum_probs=70.8

Q ss_pred             cCceEEEccc-cccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCc
Q 046857           11 SLVNLNVSYC-EKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIV   89 (439)
Q Consensus        11 ~L~~L~l~~c-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~   89 (439)
                      .++.+++.+. +.++.++.++.        .+++|++|++++ .++.++   +.+..+++|++|++++| .++.+|....
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~--------~L~~L~~L~Ls~-n~I~~i---~~l~~l~~L~~L~Ls~N-~i~~i~~~~~   90 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLS--------TLKACKHLALST-NNIEKI---SSLSGMENLRILSLGRN-LIKKIENLDA   90 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHH--------HTTTCCEEECSE-EEESCC---CCHHHHTTCCEEECCEE-EECSCSSHHH
T ss_pred             ccceeeeecccCchhhhhhHHh--------cccccceeECcc-cCCCCc---ccccCCccccChhhccc-cccccccccc
Confidence            3455555432 23444444333        588999999998 345544   44678999999999996 5666664444


Q ss_pred             CccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857           90 STPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC  163 (439)
Q Consensus        90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~  163 (439)
                      .+++|++|++++|.++          .++ .+..+++|+.|+++++. +..++.-.  ....+++|+.|+++++
T Consensus        91 ~~~~L~~L~l~~N~i~----------~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~--~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          91 VADTLEELWISYNQIA----------SLS-GIEKLVNLRVLYMSNNK-ITNWGEID--KLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHCCEEECSEEECC----------CHH-HHHHHHHSSEEEESEEE-CCCHHHHH--HHTTTTTCSEEEECSS
T ss_pred             cccccccccccccccc----------ccc-cccccccccccccccch-hccccccc--cccCCCccceeecCCC
Confidence            4567777777774332          111 12235556666666442 32221100  0023555666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.6e-06  Score=68.23  Aligned_cols=36  Identities=19%  Similarity=-0.010  Sum_probs=17.5

Q ss_pred             CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857          123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC  163 (439)
Q Consensus       123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~  163 (439)
                      .+++|++|+++++. ++.++.+. +   ...+|+.|++++.
T Consensus        78 ~l~~L~~L~Ls~N~-l~~l~~~~-~---~~~~l~~L~L~~N  113 (156)
T d2ifga3          78 FTPRLSRLNLSFNA-LESLSWKT-V---QGLSLQELVLSGN  113 (156)
T ss_dssp             SCSCCCEEECCSSC-CSCCCSTT-T---CSCCCCEEECCSS
T ss_pred             ccccccceeccCCC-CcccChhh-h---ccccccccccCCC
Confidence            45555555555333 44444333 1   1234666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.7e-06  Score=66.64  Aligned_cols=111  Identities=15%  Similarity=0.181  Sum_probs=64.6

Q ss_pred             CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857            5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF   84 (439)
Q Consensus         5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l   84 (439)
                      +...+...+.++..+.... .++..+.        .+++|+.|++.+.+.++.++.. .+..+++|+.|+++++ +++.+
T Consensus         3 ~~C~c~~~~~l~c~~~~~~-~~p~~l~--------~l~~l~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~Ls~N-~l~~i   71 (156)
T d2ifga3           3 DACCPHGSSGLRCTRDGAL-DSLHHLP--------GAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFV   71 (156)
T ss_dssp             SSSCCSSSSCEECCSSCCC-TTTTTSC--------SCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEE
T ss_pred             CCCCcCCCCeEEecCCCCc-cCccccc--------CccccCeeecCCCccccccCch-hhccccccCcceeecc-ccCCc
Confidence            3444555566666554332 2333222        3567777777664555555432 2556777888888774 56666


Q ss_pred             cc-CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC
Q 046857           85 SQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP  136 (439)
Q Consensus        85 ~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  136 (439)
                      +. .+..+++|++|++++|.          ++.++.++....+|+.|++++++
T Consensus        72 ~~~~f~~l~~L~~L~Ls~N~----------l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          72 APDAFHFTPRLSRLNLSFNA----------LESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CTTGGGSCSCCCEEECCSSC----------CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ccccccccccccceeccCCC----------CcccChhhhccccccccccCCCc
Confidence            43 36677788888877733          33344443344567778877655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.4e-08  Score=93.32  Aligned_cols=114  Identities=17%  Similarity=0.180  Sum_probs=70.1

Q ss_pred             cccceeeccccccccccccccCccCCCCccEEeeccCCCcc-----ccccCCcCccCccceeecCceeeecCcCchhhhh
Q 046857           42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK-----TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQK  116 (439)
Q Consensus        42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  116 (439)
                      ++|++|++++ .++.+......+..+++++.|++.+|. ++     .+...+..+++|++|++++|.+.     +..+..
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~-----~~~~~~   74 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELG-----DVGVHC   74 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCH-----HHHHHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCC-----hHHHHH
Confidence            3789999977 444332222224568899999999984 44     24455677889999999885433     122333


Q ss_pred             hhhhhc-CCCCccEEEccCCCCceeecCCCCCC--cCccCCccEEEecccc
Q 046857          117 CYEEMI-GFRDIQYLQLSHFPRLKEIWHGQALP--VRFFNYLAELEVDYCT  164 (439)
Q Consensus       117 l~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~l~--~~~~~~L~~L~l~~~~  164 (439)
                      +...+. ...+|++|++++|. +++..... ++  ...+++|++|++.++.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~-it~~~~~~-l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCC-LTGAGCGV-LSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSC-CBGGGHHH-HHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHhcCCCCCCEEECCCCC-cccccccc-ccchhhcccccccccccccc
Confidence            444433 23579999998775 44321100 11  1357889999988763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.00  E-value=5.7e-07  Score=82.43  Aligned_cols=70  Identities=11%  Similarity=0.146  Sum_probs=33.4

Q ss_pred             CCCCccEEeeccCCCcc-----ccccCCcCccCccceeecCceeeecC-cCchhhhhhhhhhcCCCCccEEEccCCC
Q 046857           66 EFPSLERVSMTRCPNMK-----TFSQGIVSTPKLHEVQEEGELCRWEG-NLNSTIQKCYEEMIGFRDIQYLQLSHFP  136 (439)
Q Consensus        66 ~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~  136 (439)
                      ....|++|+++++ .+.     .+...+...++|+.++++++...... .....+..+...+..+++|++|+++++.
T Consensus        29 ~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          29 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             hCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3455556665553 222     23333444555555555543221111 1112344455555566777777777553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.57  E-value=5.1e-06  Score=75.84  Aligned_cols=223  Identities=13%  Similarity=0.092  Sum_probs=127.2

Q ss_pred             CCccccCceEEEccccccce---eccccccccccccccccccceeeccccccccccc---cccCccCCCCccEEeeccCC
Q 046857            6 VGIPNSLVNLNVSYCEKIEE---IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCP   79 (439)
Q Consensus         6 ~~~~~~L~~L~l~~c~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~   79 (439)
                      +...++|+.|++.+|..-..   .+...... .+.....++|++|+++++. +..-.   ....+...++|++|++.+|.
T Consensus        55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLL-LQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHH-HHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHhCCCCCEEECCCCcccccccccchHHHHH-HHHHhhCCCcccccccccc-cccccccchhhhhcccccchheeccccc
Confidence            56778999999998752211   11111100 0112246899999999842 11110   01123457899999999975


Q ss_pred             Cccc-----cc---------cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee----
Q 046857           80 NMKT-----FS---------QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI----  141 (439)
Q Consensus        80 ~l~~-----l~---------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i----  141 (439)
                       +..     +.         ......+.|+.+.++++.+..     .....+...+...+.|++|+++++. +.+.    
T Consensus       133 -l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~-----~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~  205 (344)
T d2ca6a1         133 -LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-----GSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEH  205 (344)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-----GGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHH
T ss_pred             -ccccccccccccccccccccccccCcccceeecccccccc-----cccccccchhhhhhhhccccccccc-cccccccc
Confidence             331     10         111346678888888754331     2334455555568899999999765 3321    


Q ss_pred             cCCCCCCcCccCCccEEEeccccccccccc---hhHHhhccccceeeeccccccchh--ccc-cccccccCccccccccc
Q 046857          142 WHGQALPVRFFNYLAELEVDYCTNMSSAIP---ANLLRCLNNLARLEVRNCDSLEEM--LHL-EELNADKEHIGPLFPRL  215 (439)
Q Consensus       142 ~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~--~~~-~~~~~~~~~~~~~~~~L  215 (439)
                      .....+  ..+++|+.|+++++. ++....   ...+..+++|++|++++|. +...  ..+ ..+..     . -.++|
T Consensus       206 ~l~~~l--~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~-----~-~~~~L  275 (344)
T d2ca6a1         206 LLLEGL--AYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK-----L-ENIGL  275 (344)
T ss_dssp             HHHTTG--GGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT-----C-SSCCC
T ss_pred             chhhhh--cchhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhh-----c-cCCCC
Confidence            001101  357899999998864 443211   1225677899999999985 3321  111 01100     0 12689


Q ss_pred             ceEecCCcccccc-----cccCCCcccCCCCccEEeEecC
Q 046857          216 FSLTLIDLPKLKR-----FCNFTGNIIEMPMLWSLTIENC  250 (439)
Q Consensus       216 ~~L~l~~~~~l~~-----~~~~~~~~~~~~~L~~L~l~~c  250 (439)
                      ++|+++++. ++.     +....  ...+++|+.|++.++
T Consensus       276 ~~L~ls~N~-i~~~~~~~l~~~l--~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         276 QTLRLQYNE-IELDAVRTLKTVI--DEKMPDLLFLELNGN  312 (344)
T ss_dssp             CEEECCSSC-CBHHHHHHHHHHH--HHHCTTCCEEECTTS
T ss_pred             CEEECCCCc-CChHHHHHHHHHH--HccCCCCCEEECCCC
Confidence            999999874 432     11111  124689999999884

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.44  E-value=0.0054  Score=48.65  Aligned_cols=14  Identities=14%  Similarity=0.176  Sum_probs=7.3

Q ss_pred             Hhhccccceeeecc
Q 046857          175 LRCLNNLARLEVRN  188 (439)
Q Consensus       175 ~~~l~~L~~L~l~~  188 (439)
                      +..-++|++|++.+
T Consensus       127 L~~n~sL~~l~l~~  140 (167)
T d1pgva_         127 IEENESLLRVGISF  140 (167)
T ss_dssp             HHHCSSCCEEECCC
T ss_pred             HHhCCCccEeeCcC
Confidence            33445566665554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.28  E-value=0.0054  Score=48.66  Aligned_cols=65  Identities=11%  Similarity=0.152  Sum_probs=37.2

Q ss_pred             cCCCCccEEeeccCCCcc-----ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCC
Q 046857           65 LEFPSLERVSMTRCPNMK-----TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHF  135 (439)
Q Consensus        65 ~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  135 (439)
                      ...+.|++|++++|. +.     .+...+...+.|++|++++|.+..     .....+...+...+.|++|++.++
T Consensus        41 ~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~-----~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          41 CNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTP-----ELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             TTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCH-----HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcch-----HHHHHHHHHHHhCCcCCEEECCCC
Confidence            345667777776653 33     122233445667777777654332     234445556666777888888754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0017  Score=51.54  Aligned_cols=87  Identities=17%  Similarity=0.121  Sum_probs=55.3

Q ss_pred             cccccceeeccccccccccccc-cCccCCCCccEEeeccCCCcccccc-CCcCccCccceeecCceeeecCcC-chhhhh
Q 046857           40 AFSNLKVLILDYLPRLTSFCLE-NYTLEFPSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEGELCRWEGNL-NSTIQK  116 (439)
Q Consensus        40 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~  116 (439)
                      .+++|++|++++ .++.++... ..+..+++|+.|+++++ .++.++. ......+|+.++++++.+.....- ......
T Consensus        63 ~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          63 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             hCCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            488999999999 344443211 22456899999999995 6666654 122345799999999776532211 122222


Q ss_pred             hhhhhcCCCCccEEE
Q 046857          117 CYEEMIGFRDIQYLQ  131 (439)
Q Consensus       117 l~~~~~~~~~L~~L~  131 (439)
                      +   +..+++|+.|+
T Consensus       141 i---~~~~P~L~~LD  152 (162)
T d1koha1         141 I---RERFPKLLRLD  152 (162)
T ss_dssp             H---HTTSTTCCEET
T ss_pred             H---HHHCCCCCEEC
Confidence            3   33688899885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0043  Score=49.01  Aligned_cols=85  Identities=16%  Similarity=0.153  Sum_probs=54.0

Q ss_pred             cCCCCccEEeeccCCCcccc---ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee
Q 046857           65 LEFPSLERVSMTRCPNMKTF---SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI  141 (439)
Q Consensus        65 ~~l~~L~~L~l~~c~~l~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i  141 (439)
                      ..+++|++|+++++ +++.+   +..+..+++|+.|++++|.+....++         ......+|++|++.+++-....
T Consensus        62 ~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l---------~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          62 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL---------DKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH---------HHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhh---------hhhhccccceeecCCCCcCcCc
Confidence            46899999999996 56644   34456799999999999654432211         1113457999999987633221


Q ss_pred             cCCCC---CCcCccCCccEEE
Q 046857          142 WHGQA---LPVRFFNYLAELE  159 (439)
Q Consensus       142 ~~~~~---l~~~~~~~L~~L~  159 (439)
                      .....   .....+|+|+.|+
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEET
T ss_pred             ccchhHHHHHHHHCCCCCEEC
Confidence            11000   0013689999887

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.77  E-value=0.011  Score=46.79  Aligned_cols=14  Identities=14%  Similarity=0.067  Sum_probs=8.6

Q ss_pred             Hhhccccceeeecc
Q 046857          175 LRCLNNLARLEVRN  188 (439)
Q Consensus       175 ~~~l~~L~~L~l~~  188 (439)
                      +...++|++|++..
T Consensus       128 L~~n~~L~~L~l~~  141 (166)
T d1io0a_         128 LEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHCSSCCEEECCC
T ss_pred             HHhCCCcCEEeCcC
Confidence            44566677776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.04  E-value=0.016  Score=45.65  Aligned_cols=116  Identities=9%  Similarity=0.075  Sum_probs=61.5

Q ss_pred             ccccceeeccccccccccc---cccCccCCCCccEEeeccCCCcc-----ccccCCcCccCccceeecCceeeecCcCch
Q 046857           41 FSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCPNMK-----TFSQGIVSTPKLHEVQEEGELCRWEGNLNS  112 (439)
Q Consensus        41 ~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~  112 (439)
                      .++|+.|++++...+..-.   ....+...++|++|++++| .+.     .+...+...++++.++++++...     ..
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~-----~~   89 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFIS-----GS   89 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCC-----HH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccccc-----ch
Confidence            4566677666543332211   1111335677777777776 333     13333455677777777764433     23


Q ss_pred             hhhhhhhhhcCCCCccEEEccCCC-CceeecCCCCCC--cCccCCccEEEeccc
Q 046857          113 TIQKCYEEMIGFRDIQYLQLSHFP-RLKEIWHGQALP--VRFFNYLAELEVDYC  163 (439)
Q Consensus       113 ~~~~l~~~~~~~~~L~~L~l~~~~-~l~~i~~~~~l~--~~~~~~L~~L~l~~~  163 (439)
                      .+..+.+.+...++|+.++|..+. .+.+..... +.  ....++|++|++...
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~-La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEME-IANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH-HHHHHHHCSSCCEEECCCS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH-HHHHHHhCCCcCEEeCcCC
Confidence            345566666677888887776432 232110000 10  024678888887553