Citrus Sinensis ID: 046956
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FHR3 | 550 | Putative pentatricopeptid | yes | no | 0.933 | 0.974 | 0.599 | 0.0 | |
| Q9LS72 | 600 | Pentatricopeptide repeat- | no | no | 0.926 | 0.886 | 0.390 | 1e-121 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.928 | 0.722 | 0.381 | 1e-118 | |
| Q1PEU4 | 555 | Pentatricopeptide repeat- | no | no | 0.886 | 0.917 | 0.386 | 1e-113 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.956 | 0.806 | 0.352 | 1e-110 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.928 | 0.719 | 0.355 | 1e-110 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.914 | 0.756 | 0.384 | 1e-109 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.921 | 0.772 | 0.384 | 1e-108 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.825 | 0.606 | 0.391 | 1e-102 | |
| O49399 | 545 | Pentatricopeptide repeat- | no | no | 0.851 | 0.897 | 0.360 | 1e-101 |
| >sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1 | Back alignment and function desciption |
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Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/537 (59%), Positives = 413/537 (76%), Gaps = 1/537 (0%)
Query: 37 LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96
LLS TL K CK + HL+Q+H+ II+KGLEQD +L++ FIS S ++ LSYS++VF R+
Sbjct: 10 LLSLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERV 69
Query: 97 VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREG 155
+P T+LWN L+KGYS F E +I +R++R A PD+YTFPLV+K CS+ VR G
Sbjct: 70 PSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVG 129
Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
+++H V+R G D+DV VGTS +D YGK K++ ARKVF EMPERN VSWTA++V Y
Sbjct: 130 SSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKS 189
Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
G+L EAK++FDLMPER+ SWNAL+ GLVK GDL +A++LFDEMP+R+++SYT+MIDGYA
Sbjct: 190 GELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYA 249
Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
K GDM SAR LFE A DV AWSALI GYAQNGQP+EA K+FS+MC+KNV+PDEFI+V
Sbjct: 250 KGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVG 309
Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
LMSACSQ+G +L VDSYL + S +V+ AL+DMNAKCG+MDRAA+LFE MP R
Sbjct: 310 LMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQR 369
Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
D+VSYCSM++G++IHG G +A+ LF++M+ EG+ PDEVAFT++L C LVE+G R+F
Sbjct: 370 DLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYF 429
Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
E M+ Y+I+ SP+HY+C+V+LL RTG LK AYEL+ SMP E HASAWG+LLG C L+ +
Sbjct: 430 ELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGN 489
Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
E+ E+VA LFELEPQ+AGSYVLLSNIYA DRW DV +R KM E G+ KI G S
Sbjct: 490 TEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/538 (39%), Positives = 345/538 (64%), Gaps = 6/538 (1%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPN 100
L + KC + Q+H+ II++ L +D + IS SL + + VFN++ PN
Sbjct: 23 LQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISAL-SLCRQTNLAVRVFNQVQEPN 81
Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
L N+L++ ++QNS+ + F +F + R D +T+P ++KACS + +H
Sbjct: 82 VHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHN 141
Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISC--ARKVFDEMPERNVVSWTAMIVGYASVGDL 218
+ + G+ D++V +LID Y + + A K+F++M ER+ VSW +M+ G G+L
Sbjct: 142 HIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEL 201
Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
+A+ +FD MP+R +SWN ++ G + ++ A +LF++MPERN VS++TM+ GY+K G
Sbjct: 202 RDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAG 261
Query: 279 DMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
DM AR +F+ P ++VV W+ +I+GYA+ G EA ++ M + ++ D ++S+
Sbjct: 262 DMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISI 321
Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396
++AC++ G L L + S L RS++ S A+V+ AL+DM AKCGN+ +A ++F +P +D
Sbjct: 322 LAACTESGLLSLGMRIHSILKRSNLG-SNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKD 380
Query: 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456
+VS+ +M+ GL +HGHG++A+ LF RM EG+ PD+V F VL +C+H GL+++G +F
Sbjct: 381 LVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFY 440
Query: 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516
+M+ VY +VP EHY C+VDLLGR G LK A +++ +MP+EP+ WGALLGAC++++++
Sbjct: 441 SMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEV 500
Query: 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
++ + V + L +L+P + G+Y LLSNIYA A+ W V +RSKMK G+ K G SS+
Sbjct: 501 DIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/576 (38%), Positives = 340/576 (59%), Gaps = 43/576 (7%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQD-HSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
++LI++C L Q H H+I+ G D +S F S L Y+ VF+ I P
Sbjct: 34 ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93
Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVPDKYTFPLVIKACSHVLSVREGTAI 158
N+F WNTL++ Y+ + F+ ++ E + P+KYTFP +IKA + V S+ G ++
Sbjct: 94 NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
H ++ V DVFV SLI Y ++ A KVF + E++VVSW +MI G+ G
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213
Query: 219 VEAKTVFDLM------------------------------------PERSNVSW---NAL 239
+A +F M R NV+ NA+
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAM 273
Query: 240 IGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWS 299
+ K G + A++LFD M E++ V++TTM+DGYA D +AR + + P +D+VAW+
Sbjct: 274 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWN 333
Query: 300 ALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
ALIS Y QNG+P+EA+ +F ++ KN++ ++ LVS +SAC+QVG L+L W+ SY+ +
Sbjct: 334 ALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKK 393
Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
+ ++ HV +AL+ M +KCG+++++ E+F ++ RDV + +MI GL++HG G +AV
Sbjct: 394 HGIRMN-FHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVD 452
Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478
+F +M + P+ V FT V ACSH GLV++ F M++ Y IVP +HYAC+VD+L
Sbjct: 453 MFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVL 512
Query: 479 GRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538
GR+G+L+ A + + +MP+ P S WGALLGACK+++++ L E+ RL ELEP+N G++V
Sbjct: 513 GRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHV 572
Query: 539 LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
LLSNIYA +W +V +R M+ GL+K PGCSS+
Sbjct: 573 LLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/517 (38%), Positives = 321/517 (62%), Gaps = 8/517 (1%)
Query: 60 IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN-RIVNPNTFLWNTLLKGYSQNSRFI 118
+++ +E + + F+ + S A + Y+ +F+ R ++FL N+++K Y + ++
Sbjct: 1 MLRHAIETNVQIFTKFLVISAS-AVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYP 59
Query: 119 EVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177
+ F ++ L +E PD +TF + K+CS + V +G +H+ + R+G D++V T +
Sbjct: 60 DSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGV 119
Query: 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVS-W 236
+D+Y K ++ CAR FDEMP R+ VSWTA+I GY G+L A +FD MP +V +
Sbjct: 120 VDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIY 179
Query: 237 NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
NA++ G VK GD+ SAR+LFDEM + V+++TTMI GY + D+ +AR LF+A P+R++V
Sbjct: 180 NAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLV 239
Query: 297 AWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355
+W+ +I GY QN QP E +++F +M + ++ PD+ ++S++ A S G L L W +
Sbjct: 240 SWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299
Query: 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
+ R +D + V A++DM +KCG +++A +F+ MP + V S+ +MI G +++G+ R
Sbjct: 300 VQRKKLD-KKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARA 358
Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
A+ LF M+ E PDE+ V+TAC+H GLVE+G ++F M+ + + EHY CMV
Sbjct: 359 ALDLFVTMMIEE-KPDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCMV 416
Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
DLLGR G LK A +L+ +MP EP+ + L AC Y DIE E + + ELEPQN G
Sbjct: 417 DLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDG 476
Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
+YVLL N+YA RW D +V++ M++ +K GCS
Sbjct: 477 NYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCS 513
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/596 (35%), Positives = 335/596 (56%), Gaps = 47/596 (7%)
Query: 25 RSAPINFPKPSCLL---SALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCH- 80
R PIN+ + L+L++KCKL HL Q+ + +I GL D + I+ C
Sbjct: 38 RDKPINWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCAL 97
Query: 81 SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE---EAVPDKY 137
S + L YS + I NPN F WN ++G+S++ E F ++ +++R E+ PD +
Sbjct: 98 SESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHF 157
Query: 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197
T+P++ K C+ + G I V++ ++ V + I ++ ++ ARKVFDE
Sbjct: 158 TYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDES 217
Query: 198 PERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-------------SNVSW-------- 236
P R++VSW +I GY +G+ +A V+ LM S+ S
Sbjct: 218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGK 277
Query: 237 ------------------NALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
NAL+ K GD+ AR++FD + +R +VS+TTMI GYA+ G
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337
Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
+ +R LF+ ++DVV W+A+I G Q + +A+ +F +M + N +PDE ++ +S
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLS 397
Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
ACSQ+G LD+ W+ Y+ + + L+ A + +LVDM AKCGN+ A +F + R+ +
Sbjct: 398 ACSQLGALDVGIWIHRYIEKYSLSLNVA-LGTSLVDMYAKCGNISEALSVFHGIQTRNSL 456
Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
+Y ++I GL++HG A+S F+ M+ G+ PDE+ F +L+AC H G+++ G +F M
Sbjct: 457 TYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQM 516
Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
++ + + P +HY+ MVDLLGR G L+ A L+ SMP+E A+ WGALL C+++ ++EL
Sbjct: 517 KSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVEL 576
Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
GE A +L EL+P ++G YVLL +Y A+ W D R M ERG+ KIPGCSS+
Sbjct: 577 GEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSI 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/579 (35%), Positives = 336/579 (58%), Gaps = 46/579 (7%)
Query: 40 ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP----LSYSTAVFNR 95
+L+L+ CK L +H+ +IK GL + ++ I C + +P L Y+ +VF
Sbjct: 36 SLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFC--ILSPHFEGLPYAISVFKT 93
Query: 96 IVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
I PN +WNT+ +G++ +S + ++V +I +P+ YTFP V+K+C+ + +EG
Sbjct: 94 IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEG 153
Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
IH V++ G D D++V TSLI +Y + + A KVFD+ P R+VVS+TA+I GYAS
Sbjct: 154 QQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASR 213
Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNV----------V 265
G + A+ +FD +P + VSWNA+I G + G+ + A +LF +M + NV V
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273
Query: 266 S-----------------------------YTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296
S +ID Y+K G++ +A LFE P +DV+
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333
Query: 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356
+W+ LI GY EA+ +F +M P++ ++S++ AC+ +G +D+ W+ Y+
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393
Query: 357 SRSHMDLSRAHVI-AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQ 415
+ ++ A + +L+DM AKCG+++ A ++F ++ ++ + S+ +MI G ++HG
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453
Query: 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475
+ LF RM G+ PD++ F +L+ACSH G+++ G F M Y + P EHY CM+
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513
Query: 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535
DLLG +G K A E++N M +EP W +LL ACK++ ++ELGE A L ++EP+N G
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573
Query: 536 SYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
SYVLLSNIYA+A RW +V R+ + ++G++K+PGCSS+
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSI 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/544 (38%), Positives = 320/544 (58%), Gaps = 19/544 (3%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
+LI + L Q+H+ ++ GL+ L+ I S ++++ VF+ + P
Sbjct: 26 SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGD-ITFARQVFDDLPRPQI 84
Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
F WN +++GYS+N+ F + ++ + PD +TFP ++KACS + ++ G +HA
Sbjct: 85 FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144
Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFD--EMPERNVVSWTAMIVGYASVGDLV 219
V R G D DVFV LI LY K + + AR VF+ +PER +VSWTA++ YA G+ +
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204
Query: 220 EAKTVFDLMPERS-NVSWNALI---GGLVKIGDLRSARQLFD-------EMPERNVVSYT 268
EA +F M + W AL+ + DL+ R + E+ ++S
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264
Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
TM YAK G + +A+ LF+ +++ W+A+ISGYA+NG EA+ +F +M +K+V+P
Sbjct: 265 TM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
D + S +SAC+QVG+L+ + + Y+ RS + +AL+DM AKCG+++ A +
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYR-DDVFISSALIDMFAKCGSVEGARLV 380
Query: 389 FETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448
F+ +RDVV + +MI G +HG R+A+SL+ M G+ P++V F +L AC+H G+V
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMV 440
Query: 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508
+GW FF M + + I P +HYAC++DLLGR GHL AYE++ MPV+P + WGALL
Sbjct: 441 REGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499
Query: 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568
ACK + +ELGE A +LF ++P N G YV LSN+YA A W V VR +MKE+GL K
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD 559
Query: 569 PGCS 572
GCS
Sbjct: 560 VGCS 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/539 (38%), Positives = 305/539 (56%), Gaps = 10/539 (1%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
TLI HL Q+H +I L D LV + YS +F+ PN
Sbjct: 18 TLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRT-LFFRQTKYSYLLFSHTQFPNI 76
Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
FL+N+L+ G+ N F E +F+ + + +TFPLV+KAC+ S + G +H+
Sbjct: 77 FLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSL 136
Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
V++ G + DV TSL+ +Y ++ A K+FDE+P+R+VV+WTA+ GY + G EA
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREA 196
Query: 222 KTVFDLMPERS----NVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDG 273
+F M E + ++ V +GDL S + M E +N TT+++
Sbjct: 197 IDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNL 256
Query: 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333
YAK G M ARS+F++ ++D+V WS +I GYA N P E +++F M +N++PD+F +
Sbjct: 257 YAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSI 316
Query: 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
V +S+C+ +G LDL W S + R H L+ + AL+DM AKCG M R E+F+ M
Sbjct: 317 VGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375
Query: 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453
+D+V + I GL+ +GH + + ++F + G++PD F +L C H GL++DG R
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435
Query: 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513
FF A+ VYA+ + EHY CMVDL GR G L AY L+ MP+ P+A WGALL C+L
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495
Query: 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
D +L E V L LEP NAG+YV LSNIY+ RW + VR M ++G++KIPG S
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYS 554
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/485 (39%), Positives = 296/485 (61%), Gaps = 11/485 (2%)
Query: 89 STAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
+ +VF+R+ N WN LL Y QNS+ E +F + + LV C
Sbjct: 176 ARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF---------KSRENWALVSWNCLL 226
Query: 149 VLSVREGTAIHAAVIRWGVD-EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTA 207
V++ + A ++ DV ++I Y + +I AR++FDE P ++V +WTA
Sbjct: 227 GGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286
Query: 208 MIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267
M+ GY + EA+ +FD MPER+ VSWNA++ G V+ + A++LFD MP RNV ++
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346
Query: 268 TTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ 327
TMI GYA+ G ++ A++LF+ P RD V+W+A+I+GY+Q+G EA+++F M + +
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406
Query: 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387
+ S +S C+ V L+L + L + + V AL+ M KCG+++ A +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIEEAND 465
Query: 388 LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447
LF+ M +D+VS+ +MI G S HG G A+ F+ M EGL PD+ VL+ACSH GL
Sbjct: 466 LFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL 525
Query: 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL 507
V+ G ++F M Y ++P+ +HYACMVDLLGR G L+ A+ L+ +MP EP A+ WG LL
Sbjct: 526 VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585
Query: 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567
GA +++ + EL E A+++F +EP+N+G YVLLSN+YA++ RW DV +R +M+++G++K
Sbjct: 586 GASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK 645
Query: 568 IPGCS 572
+PG S
Sbjct: 646 VPGYS 650
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/524 (36%), Positives = 298/524 (56%), Gaps = 35/524 (6%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP--LSYSTAVFNRIVN 98
L+ ++ K T + Q H+ ++K GL D + ++ + P +SY+ ++ NRI +
Sbjct: 43 LSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGS 102
Query: 99 PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
PN F N++++ Y+ +S T+F ++ PDKY+F V+KAC+ EG I
Sbjct: 103 PNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQI 162
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
H I+ G+ DVFV +L+++YG+ ARKV D M
Sbjct: 163 HGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRM--------------------- 201
Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
P R VSWN+L+ ++ G + AR LFDEM ERNV S+ MI GYA G
Sbjct: 202 ----------PVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAG 251
Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQ-PDEFILVSLM 337
+ A+ +F++ P RDVV+W+A+++ YA G +E +++F+ M + + PD F LVS++
Sbjct: 252 LVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVL 311
Query: 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV 397
SAC+ +G+L WV Y+ + +++ + ALVDM +KCG +D+A E+F RDV
Sbjct: 312 SACASLGSLSQGEWVHVYIDKHGIEI-EGFLATALVDMYSKCGKIDKALEVFRATSKRDV 370
Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457
++ S+I LS+HG G+ A+ +F M+ EG P+ + F VL+AC+HVG+++ + FE
Sbjct: 371 STWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEM 430
Query: 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIE 517
M +VY + P+ EHY CMVDLLGR G ++ A EL+N +P + + +LLGACK + +E
Sbjct: 431 MSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLLGACKRFGQLE 490
Query: 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561
E +ANRL EL +++ Y +SN+YA+ RW V R M+
Sbjct: 491 QAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNMR 534
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | ||||||
| 225440783 | 561 | PREDICTED: putative pentatricopeptide re | 0.923 | 0.944 | 0.691 | 0.0 | |
| 449451283 | 565 | PREDICTED: putative pentatricopeptide re | 0.968 | 0.984 | 0.630 | 0.0 | |
| 224091939 | 547 | predicted protein [Populus trichocarpa] | 0.916 | 0.961 | 0.662 | 0.0 | |
| 147799847 | 546 | hypothetical protein VITISV_017037 [Viti | 0.897 | 0.943 | 0.662 | 0.0 | |
| 356505262 | 566 | PREDICTED: putative pentatricopeptide re | 0.966 | 0.980 | 0.603 | 0.0 | |
| 297740165 | 560 | unnamed protein product [Vitis vinifera] | 0.837 | 0.858 | 0.621 | 0.0 | |
| 15240281 | 550 | pentatricopeptide repeat-containing prot | 0.933 | 0.974 | 0.599 | 0.0 | |
| 297805312 | 547 | pentatricopeptide repeat-containing prot | 0.911 | 0.956 | 0.603 | 0.0 | |
| 414587316 | 622 | TPA: hypothetical protein ZEAMMB73_48845 | 0.930 | 0.858 | 0.491 | 1e-154 | |
| 357163369 | 548 | PREDICTED: putative pentatricopeptide re | 0.916 | 0.959 | 0.5 | 1e-154 |
| >gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/531 (69%), Positives = 448/531 (84%), Gaps = 1/531 (0%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
TL+K C + L QVH+ II+KGL QDH +++ F++LC+SL+ SY+T+VFN + +P+T
Sbjct: 30 TLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSN-FSYTTSVFNGVSSPST 88
Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
LWNT +KGYS+N ++F+R+ R +AVPDK+T+P +IKACS V V+EG A H +
Sbjct: 89 VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGS 148
Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
+R GV DVFV TSLIDLYGK EI CARKVFDEM ERNVVSWTAMI GYAS DLVEA
Sbjct: 149 AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA 208
Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
+ +FD MPE++ VSWNA+I G VK GDLRSAR++FDEMP RNVVS+TTMIDGYAK GDM
Sbjct: 209 RKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMA 268
Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
SAR +FE AP+RDVVAWSALISGY QNGQP+EAVKIF +MCS+NV+PDEFI+VSLMSACS
Sbjct: 269 SARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACS 328
Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
Q+G+L+L+ WVD Y+ +S +D+ RAHVIAAL+DMNAKCG+MDRA +LFE MP RD++SYC
Sbjct: 329 QMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYC 388
Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
SM++GLSIHG G QAVSLF RML+EGLTPD+VAFT++LTACS GLV++G +FE+M+
Sbjct: 389 SMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTD 448
Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
Y+IVPSP+HYACMVDLLGR G LK AYELL SMPVEPHA AWGALLGACKL+ DIELGE+
Sbjct: 449 YSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEV 508
Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
VA++LFELEPQNAG+YVLLSNIYA A++WLDV L+R+KM+ERG+RKIPGCS
Sbjct: 509 VADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 559
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570-like [Cucumis sativus] gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/558 (63%), Positives = 452/558 (81%), Gaps = 2/558 (0%)
Query: 16 CSSMLPNCSRSAPINFPKPSCLLSALT-LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAH 74
C S + A PK + L +++ L+K CK LHQVH+H+I+KGLEQD LV
Sbjct: 7 CFSRFHTTTSFAKTTNPKSNVSLYSISALLKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQ 66
Query: 75 FISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP 134
FIS +S+A +SYST+VF+R+++P+TFLWN+L+ GY +F+++ +++VR+ RE+ P
Sbjct: 67 FISASNSVA-HISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAP 125
Query: 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVF 194
D+YTFP ++K C+ + EG A+H +++R GVDED++V TSL++LYGK I CARKVF
Sbjct: 126 DRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVF 185
Query: 195 DEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254
D M ERNVVSWTAMIVGY+S+G+LVEAK +FDLMPER+ SWNA+IGG +K+GD++SA +
Sbjct: 186 DGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEK 245
Query: 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314
FDEMPE+NVVS+TTMIDGYAK GDM SAR+LF+ AP+RD++AWSALISGY QNGQP+EA
Sbjct: 246 AFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEA 305
Query: 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374
VK F +M S+NV+PD+F+L SLM ACSQ+GNLDL+ WVDSY +R +DL AHV AAL+D
Sbjct: 306 VKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALID 365
Query: 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA 434
MNAKCGNM+RA LFE MP RD++SYCS+++GLSIHGHG QAVSLF+RML E LTPD+VA
Sbjct: 366 MNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVA 425
Query: 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494
FT++LTACS GLV++GW +FE M+ Y++VPS +HYAC+VDLL R+G LK AYEL+ S+
Sbjct: 426 FTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSV 485
Query: 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554
PV+ HA AWGALLGACKLY D EL E+VA+RL E+EP+NAG+YVLLSNIYA ADRWLDV
Sbjct: 486 PVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVS 545
Query: 555 LVRSKMKERGLRKIPGCS 572
VR++M ERGLRKIPGCS
Sbjct: 546 AVRNQMNERGLRKIPGCS 563
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa] gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/531 (66%), Positives = 444/531 (83%), Gaps = 5/531 (0%)
Query: 43 LIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTF 102
LIK CK HLHQ H+HII KGLEQDH +++HF+S+ +T +SYST++FNR++NP+TF
Sbjct: 15 LIKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFLSI----STSVSYSTSIFNRLLNPSTF 70
Query: 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
L+N LLK +S+NS+FI+ F++F R+ + E A+ DKYT+PL+IK CS+ L ++EG +H +
Sbjct: 71 LYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGS 130
Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
IR GV +DV+VG+SLI YGK KEI ARKVFDE+PERNVVSWTAM+ GYASVGDL A
Sbjct: 131 AIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENA 190
Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
K VF+ MPER+ SWNA+I GL K GDL AR++FDEM ERNVVS+T MIDGYAKVGDM
Sbjct: 191 KRVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMA 250
Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
SAR+LF+ AP++DVVAWSALISGY++N QP+EAVKIF +M S NV+PDEFI+VSLMSACS
Sbjct: 251 SARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACS 310
Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
Q+GN DL+ WVDSYLS++ +D +AHV+AAL+DM+AKCGNM++A +LF+ MP+RD++ C
Sbjct: 311 QLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCC 370
Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
S+I+GLSIHG G +AV LF+RML EGL PD VAFT++LTACS GL+EDGW FF+ M+N
Sbjct: 371 SLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNK 430
Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
Y++VPSP HYACMVDLL R G L++AY+LL SMP++PHA AWGALLGACKL+ D+EL E
Sbjct: 431 YSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVELREE 490
Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
VANRL ELEP+ AGSYVLLSNIYA+A++WLDV +VR +MKERG+RKIPGCS
Sbjct: 491 VANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCS 541
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/531 (66%), Positives = 429/531 (80%), Gaps = 16/531 (3%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
TL+K C + L QVH+ II+KGL QDH L++ F++LC+SL+ SY+T+VFN + +P+T
Sbjct: 30 TLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSN-FSYTTSVFNGVSSPST 88
Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
LWNT +KGYS+N ++F+R+ R +AVPDK+T+P +IKACS V V+EG A H +
Sbjct: 89 VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGS 148
Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
+R GV DVFV TSLIDLYGK EI CARKVFDEM ERNVVSWTAMI GYAS DLVEA
Sbjct: 149 AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA 208
Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
+ +FD MPE++ VSWNA+I G VK GDLRSAR++FDEMP RNVVS+TTMIDGYAK GDM
Sbjct: 209 RKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMA 268
Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
SAR +FE AP+RDVVAWSALI F NV+PDEFI+VSLMSACS
Sbjct: 269 SARFVFEEAPERDVVAWSALI---------------FRVCAEWNVKPDEFIMVSLMSACS 313
Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
Q+G+L+L+ WVD Y+ +S +D+ RAHVIAAL+DMNAKCG+MDRA +LFE MP RD++SYC
Sbjct: 314 QMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYC 373
Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
SM++GLSIHG G QAVSLF RML+EGLTPD+VAFT++LTACS GLV++G +FE+M+
Sbjct: 374 SMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTD 433
Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
Y+IVPSP+HYACMVDLLGR G LK AYELL SMPVEPHA AWGALLGACKL+ DIELGE+
Sbjct: 434 YSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEV 493
Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
VA++LFELEPQNAG+YVLLSNIYA A++WLDV L+R+KM+ERG+RKIPGCS
Sbjct: 494 VADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 544
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/558 (60%), Positives = 436/558 (78%), Gaps = 3/558 (0%)
Query: 17 SSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFI 76
S+ + + S S+P + S TL+K CK + HL QVH+ II +GLEQDH LV FI
Sbjct: 12 STSMRSISHSSPFRLHSAA---SITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFI 68
Query: 77 SLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136
S H+L + LSY+++VF+R++ P+T LWNTL+K + Q + F + F R+ A+PD
Sbjct: 69 SRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDS 128
Query: 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196
+T+P VIKACS REG ++H + R GVD+D++VGTSLID+YGK EI+ ARKVFD
Sbjct: 129 FTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDG 188
Query: 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF 256
M +RNVVSWTAM+VGY +VGD+VEA+ +FD MP R+ SWN+++ G VK+GDL AR +F
Sbjct: 189 MSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVF 248
Query: 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK 316
D MPE+NVVS+TTMIDGYAK GDM +AR LF+ + ++DVVAWSALISGY QNG P++A++
Sbjct: 249 DAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALR 308
Query: 317 IFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376
+F +M NV+PDEFILVSLMSA +Q+G+L+L+ WVDSY+S+ +DL + HVIAAL+DMN
Sbjct: 309 VFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMN 368
Query: 377 AKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436
AKCGNM+RA +LF+ P RDVV YCSMI+GLSIHG G +AV+LF+RML EGLTPDEVAFT
Sbjct: 369 AKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFT 428
Query: 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPV 496
++LTACS GLV++G +F++M+ Y I P P+HYACMVDLL R+GH++ AYEL+ +P
Sbjct: 429 VILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPW 488
Query: 497 EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556
EPHA AWGALLGACKLY D ELGE+VANRLFELEP NA +YVLLS+IYA A+RW+DV LV
Sbjct: 489 EPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLV 548
Query: 557 RSKMKERGLRKIPGCSSL 574
RSKM+ER +RKIPG S +
Sbjct: 549 RSKMRERRVRKIPGSSKI 566
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/531 (62%), Positives = 405/531 (76%), Gaps = 50/531 (9%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT 101
TL+K C + L QVH+ II+KGL QDH +++ F++LC+SL+ SY+T+VFN + +P+T
Sbjct: 78 TLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSN-FSYTTSVFNGVSSPST 136
Query: 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAA 161
LWNT +KGYS+N ++F+R+ R +AVPDK+T+P +IKACS V V+EG A H +
Sbjct: 137 VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGS 196
Query: 162 VIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
+R GV DVFV TSLIDLYGK EI CARKVFDEM ERNVVSWTAMI GYAS DLVEA
Sbjct: 197 AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA 256
Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
+ +FD MPE++ VSWNA+I G VK GDLRSAR++FDEMP RN
Sbjct: 257 RKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRN------------------ 298
Query: 282 SARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341
RDVVAWSALISG NV+PDEFI+VSLMSACS
Sbjct: 299 -----------RDVVAWSALISG--------------------NVKPDEFIMVSLMSACS 327
Query: 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
Q+G+L+L+ WVD Y+ +S +D+ RAHVIAAL+DMNAKCG+MDRA +LFE MP RD++SYC
Sbjct: 328 QMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYC 387
Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
SM++GLSIHG G QAVSLF RML+EGLTPD+VAFT++LTACS GLV++G +FE+M+
Sbjct: 388 SMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTD 447
Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
Y+IVPSP+HYACMVDLLGR G LK AYELL SMPVEPHA AWGALLGACKL+ DIELGE+
Sbjct: 448 YSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEV 507
Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
VA++LFELEPQNAG+YVLLSNIYA A++WLDV L+R+KM+ERG+RKIPGCS
Sbjct: 508 VADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 558
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g37570 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana] gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/537 (59%), Positives = 413/537 (76%), Gaps = 1/537 (0%)
Query: 37 LLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96
LLS TL K CK + HL+Q+H+ II+KGLEQD +L++ FIS S ++ LSYS++VF R+
Sbjct: 10 LLSLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERV 69
Query: 97 VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREG 155
+P T+LWN L+KGYS F E +I +R++R A PD+YTFPLV+K CS+ VR G
Sbjct: 70 PSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVG 129
Query: 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASV 215
+++H V+R G D+DV VGTS +D YGK K++ ARKVF EMPERN VSWTA++V Y
Sbjct: 130 SSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKS 189
Query: 216 GDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA 275
G+L EAK++FDLMPER+ SWNAL+ GLVK GDL +A++LFDEMP+R+++SYT+MIDGYA
Sbjct: 190 GELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYA 249
Query: 276 KVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS 335
K GDM SAR LFE A DV AWSALI GYAQNGQP+EA K+FS+MC+KNV+PDEFI+V
Sbjct: 250 KGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVG 309
Query: 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR 395
LMSACSQ+G +L VDSYL + S +V+ AL+DMNAKCG+MDRAA+LFE MP R
Sbjct: 310 LMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQR 369
Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455
D+VSYCSM++G++IHG G +A+ LF++M+ EG+ PDEVAFT++L C LVE+G R+F
Sbjct: 370 DLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYF 429
Query: 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSD 515
E M+ Y+I+ SP+HY+C+V+LL RTG LK AYEL+ SMP E HASAWG+LLG C L+ +
Sbjct: 430 ELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGN 489
Query: 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
E+ E+VA LFELEPQ+AGSYVLLSNIYA DRW DV +R KM E G+ KI G S
Sbjct: 490 TEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/527 (60%), Positives = 408/527 (77%), Gaps = 4/527 (0%)
Query: 47 CKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNT 106
CK + HL+Q+H+ II+KGLEQD +L++ FIS S ++ LSYS++VF R+ P T+LWN
Sbjct: 20 CKSEIHLNQIHARIIRKGLEQDQNLISIFIS---SSSSSLSYSSSVFERVPYPGTYLWNH 76
Query: 107 LLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW 165
L+KGYS F E ++ +R++R A PD+YTFPLV+K CS+ R G+ +H V+R
Sbjct: 77 LIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRI 136
Query: 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVF 225
G D+DV +GTS +D YGK K++ ARKVF EMPERNVVSWTA+IV Y G+L EAK +F
Sbjct: 137 GFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRMF 196
Query: 226 DLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285
DLMPER+ +WNAL+ GLVK GDL +AR+LFDEMP+R+++SYT+MIDGYAK GDM SAR
Sbjct: 197 DLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSARD 256
Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
LFE A DV AWSALI GYAQNGQP+EA K+FS+MC+KNV+PDEFI+V LMSACSQ+G
Sbjct: 257 LFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGC 316
Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
+L VDSYL +S S +VI AL+DMNAKCG+MDRAA+LFE MP RD+VSYCSM++
Sbjct: 317 FELCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMME 376
Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
G++IHG G +AV LF++M+ EG+ PDEVAFT++L CS LVE+G R+FE M+ Y+I+
Sbjct: 377 GMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLVEEGLRYFELMRKEYSIL 436
Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
SP+HY+C+V+LL RTG LK AYEL+ SMP E HASAWG+LLG C L+ + E+ E+VA +
Sbjct: 437 ASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARQ 496
Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
LFELEPQ+AGSYVLLSNIYA DRW D+ +R KM E G++KI G S
Sbjct: 497 LFELEPQSAGSYVLLSNIYAALDRWADLAHLRDKMNENGIKKICGRS 543
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/541 (49%), Positives = 374/541 (69%), Gaps = 7/541 (1%)
Query: 33 KPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATP---LSYS 89
+PS L+ TL+ +C L Q+H+ II GL H+L+A F + C +L P S+
Sbjct: 80 RPSVALA--TLLGRCCTVRCLAQLHARIILLGLHNHHALLARFTTACDALECPSVAASFI 137
Query: 90 TAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHV 149
A+ + P L N +L ++++ T F L+R+ A+PD ++FP +++AC+ V
Sbjct: 138 AALTDSHAAP-LRLRNAVLASLARHAPLHAALTEF-NLLRQAALPDSFSFPCLLRACARV 195
Query: 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
+ G A+HAA IR GV D+F+ T+LI YG+ AR +F ++ + VSWTA+I
Sbjct: 196 SCLPAGRALHAAAIRLGVHADLFIRTALIQFYGRCGVADAARALFYQIDIPSEVSWTAII 255
Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
V Y + G +++A+ +FD MP+R+ V WN ++ G VK GDL AR+LFDEMPER + T+
Sbjct: 256 VAYVNNGGIIDARALFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEMPERTATACTS 315
Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
+I GYAK G+M +AR LF+ DRDV +WSA+ISGYAQNG P EA++ F + + + PD
Sbjct: 316 LIGGYAKAGNMEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQGQGIHPD 375
Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
E ++V LMSACSQ+GN+ L++W++ Y+++ +D++ AHV+A LV+MNAKCGN++RA LF
Sbjct: 376 ELVVVGLMSACSQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLERATFLF 435
Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
E+MP RDV SYCS+++G +HG +AV LF RML EGLTPD FTIVLTAC H GLVE
Sbjct: 436 ESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLTACCHAGLVE 495
Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
+G +FF+ M+NVY +VPS EHYAC+V+LLGR G L+ AY L+ SMP +PH AWGALLG
Sbjct: 496 EGKKFFDIMKNVYLMVPSGEHYACLVNLLGRCGMLEDAYWLIMSMPGKPHPGAWGALLGG 555
Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
CKL+ +IELG++ A +LFE+EP NAG+YV LSN+YA DRW DV VR++M + + KI
Sbjct: 556 CKLHCNIELGKIAAKKLFEIEPDNAGNYVSLSNMYANIDRWGDVSEVRAEMTGKRITKIA 615
Query: 570 G 570
G
Sbjct: 616 G 616
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357163369|ref|XP_003579710.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/532 (50%), Positives = 374/532 (70%), Gaps = 6/532 (1%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPL---SYSTAVFNRIVN 98
TL+ +C+ L Q+H+ I++ GL HSL+A F + C +LA+P S+ +A+ + V
Sbjct: 14 TLLGRCRTARCLAQLHARIVRLGLHNHHSLLARFAAACDALASPSVADSFLSALPSHAVP 73
Query: 99 PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
+ + NT+L S++S F +IR A PD ++FP +++AC+HV GTA+
Sbjct: 74 LS--IRNTVLASLSRHSSLRAALAQF-NMIRRTAGPDAFSFPPLLRACAHVPCTSTGTAL 130
Query: 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDL 218
HAA IR G+D D+FV T+LI YG+ + AR +FD M + VSWTA+I+ Y + G++
Sbjct: 131 HAAAIRLGLDADLFVRTALIQFYGRCRAAGAARALFDSMTIPSDVSWTAIIIVYVNSGEI 190
Query: 219 VEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVG 278
V A+ +FD +P R+ V WNA++ G VK GDL SA +LF+EMP + ++T++I GYAK G
Sbjct: 191 VAARELFDRIPHRNLVHWNAMVDGYVKCGDLESAGRLFEEMPRKTAAAHTSLIGGYAKAG 250
Query: 279 DMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338
+M A+ LF+ DRDV AWSA+ISGYAQNG P EA +IF++ +++ PDE ++V+LM+
Sbjct: 251 NMEGAKLLFDKLQDRDVFAWSAMISGYAQNGYPGEAFRIFNEFHKQDICPDEPVIVALMA 310
Query: 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398
ACSQ+GN+ L+ W++ Y+ +D++ AHV+A L++MNAKCGNM+RA LFE+MP RDV
Sbjct: 311 ACSQLGNIMLARWIEGYIGSYSIDINNAHVLAGLINMNAKCGNMERATVLFESMPVRDVF 370
Query: 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAM 458
SYCSM++G +HG +AV LF RML EGL+PD FT+VLTAC+H GLVE+ ++F M
Sbjct: 371 SYCSMMQGHCLHGSANKAVELFSRMLLEGLSPDNAVFTVVLTACNHAGLVEEAKKYFGMM 430
Query: 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518
+NVY+IVPS +HYAC+V LLGR G L+ AYE++ SMP EPHA +WGALLG C L D EL
Sbjct: 431 KNVYSIVPSGDHYACLVSLLGRFGILRDAYEIIKSMPGEPHAGSWGALLGGCILQCDTEL 490
Query: 519 GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570
G++ A +LFE+EP NAG+YV LSNIYA DRW DV +R++M +GL KI G
Sbjct: 491 GKIAAKKLFEIEPDNAGNYVTLSNIYANIDRWTDVSKIRAEMSRKGLTKIAG 542
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | ||||||
| TAIR|locus:2151694 | 550 | AT5G37570 "AT5G37570" [Arabido | 0.937 | 0.978 | 0.6 | 1.6e-175 | |
| TAIR|locus:2094812 | 600 | AT3G29230 "AT3G29230" [Arabido | 0.921 | 0.881 | 0.390 | 1.8e-112 | |
| TAIR|locus:2054966 | 555 | AHG11 "ABA hypersensitive germ | 0.885 | 0.915 | 0.388 | 3.2e-104 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.918 | 0.769 | 0.388 | 1e-98 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.822 | 0.604 | 0.397 | 5e-92 | |
| TAIR|locus:2198811 | 558 | MEF3 "AT1G06140" [Arabidopsis | 0.923 | 0.949 | 0.349 | 5.3e-88 | |
| TAIR|locus:2010012 | 474 | AT1G13410 "AT1G13410" [Arabido | 0.672 | 0.814 | 0.431 | 1.4e-87 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.895 | 0.590 | 0.353 | 9.9e-87 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.820 | 0.668 | 0.356 | 2.6e-86 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.919 | 0.652 | 0.358 | 8.9e-86 |
| TAIR|locus:2151694 AT5G37570 "AT5G37570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1705 (605.2 bits), Expect = 1.6e-175, P = 1.6e-175
Identities = 324/540 (60%), Positives = 415/540 (76%)
Query: 34 PSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVF 93
PS LLS TL K CK + HL+Q+H+ II+KGLEQD +L++ FIS S ++ LSYS++VF
Sbjct: 8 PS-LLSLETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVF 66
Query: 94 NRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSV 152
R+ +P T+LWN L+KGYS F E +I +R++R A PD+YTFPLV+K CS+ V
Sbjct: 67 ERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQV 126
Query: 153 REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGY 212
R G+++H V+R G D+DV VGTS +D YGK K++ ARKVF EMPERN VSWTA++V Y
Sbjct: 127 RVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAY 186
Query: 213 ASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMID 272
G+L EAK++FDLMPER+ SWNAL+ GLVK GDL +A++LFDEMP+R+++SYT+MID
Sbjct: 187 VKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMID 246
Query: 273 GYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI 332
GYAK GDM SAR LFE A DV AWSALI GYAQNGQP+EA K+FS+MC+KNV+PDEFI
Sbjct: 247 GYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFI 306
Query: 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETM 392
+V LMSACSQ+G +L VDSYL + S +V+ AL+DMNAKCG+MDRAA+LFE M
Sbjct: 307 MVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEM 366
Query: 393 PNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
P RD+VSYCSM++G++IHG G +A+ LF++M+ EG+ PDEVAFT++L C LVE+G
Sbjct: 367 PQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGL 426
Query: 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL 512
R+FE M+ Y+I+ SP+HY+C+V+LL RTG LK AYEL+ SMP E HASAWG+LLG C L
Sbjct: 427 RYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSL 486
Query: 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
+ + E+ E+VA LFELEPQ+AGSYVLLSNIYA DRW DV +R KM E G+ KI G S
Sbjct: 487 HGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546
|
|
| TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 209/535 (39%), Positives = 344/535 (64%)
Query: 44 IKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFL 103
+ KC + Q+H+ II++ L +D + IS SL + + VFN++ PN L
Sbjct: 26 LPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISAL-SLCRQTNLAVRVFNQVQEPNVHL 84
Query: 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVI 163
N+L++ ++QNS+ + F +F + R D +T+P ++KACS + +H +
Sbjct: 85 CNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIE 144
Query: 164 RWGVDEDVFVGTSLIDLYGKRKEISC--ARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221
+ G+ D++V +LID Y + + A K+F++M ER+ VSW +M+ G G+L +A
Sbjct: 145 KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDA 204
Query: 222 KTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMT 281
+ +FD MP+R +SWN ++ G + ++ A +LF++MPERN VS++TM+ GY+K GDM
Sbjct: 205 RRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDME 264
Query: 282 SARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA 339
AR +F+ P ++VV W+ +I+GYA+ G EA ++ M + ++ D ++S+++A
Sbjct: 265 MARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAA 324
Query: 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
C++ G L L + S L RS++ S A+V+ AL+DM AKCGN+ +A ++F +P +D+VS
Sbjct: 325 CTESGLLSLGMRIHSILKRSNLG-SNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVS 383
Query: 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459
+ +M+ GL +HGHG++A+ LF RM EG+ PD+V F VL +C+H GL+++G +F +M+
Sbjct: 384 WNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSME 443
Query: 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELG 519
VY +VP EHY C+VDLLGR G LK A +++ +MP+EP+ WGALLGAC++++++++
Sbjct: 444 KVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Query: 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574
+ V + L +L+P + G+Y LLSNIYA A+ W V +RSKMK G+ K G SS+
Sbjct: 504 KEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558
|
|
| TAIR|locus:2054966 AHG11 "ABA hypersensitive germination 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 201/518 (38%), Positives = 323/518 (62%)
Query: 60 IIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN-RIVNPNTFLWNTLLKGYSQNSRFI 118
+++ +E + + F+ + S A + Y+ +F+ R ++FL N+++K Y + ++
Sbjct: 1 MLRHAIETNVQIFTKFLVISAS-AVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYP 59
Query: 119 EVFTIFVRLIREEA--VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS 176
+ F ++ R +R+E PD +TF + K+CS + V +G +H+ + R+G D++V T
Sbjct: 60 DSFALY-RDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTG 118
Query: 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE-RSNVS 235
++D+Y K ++ CAR FDEMP R+ VSWTA+I GY G+L A +FD MP + V
Sbjct: 119 VVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVI 178
Query: 236 WNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295
+NA++ G VK GD+ SAR+LFDEM + V+++TTMI GY + D+ +AR LF+A P+R++
Sbjct: 179 YNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNL 238
Query: 296 VAWSALISGYAQNGQPDEAVKIFSDM-CSKNVQPDEFILVSLMSACSQVGNLDLSNWVDS 354
V+W+ +I GY QN QP E +++F +M + ++ PD+ ++S++ A S G L L W
Sbjct: 239 VSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHC 298
Query: 355 YLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
++ R +D + V A++DM +KCG +++A +F+ MP + V S+ +MI G +++G+ R
Sbjct: 299 FVQRKKLD-KKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAR 357
Query: 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474
A+ LF M+ E PDE+ V+TAC+H GLVE+G ++F M+ + + EHY CM
Sbjct: 358 AALDLFVTMMIEE-KPDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKIEHYGCM 415
Query: 475 VDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534
VDLLGR G LK A +L+ +MP EP+ + L AC Y DIE E + + ELEPQN
Sbjct: 416 VDLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQND 475
Query: 535 GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
G+YVLL N+YA RW D +V++ M++ +K GCS
Sbjct: 476 GNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCS 513
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 210/541 (38%), Positives = 312/541 (57%)
Query: 42 TLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLA-TPLSYSTAVFNRIVNPN 100
TLI HL Q+H +I L D LV + L +L YS +F+ PN
Sbjct: 18 TLISVACTVNHLKQIHVSLINHHLHHDTFLVN--LLLKRTLFFRQTKYSYLLFSHTQFPN 75
Query: 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160
FL+N+L+ G+ N F E +F+ + + +TFPLV+KAC+ S + G +H+
Sbjct: 76 IFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHS 135
Query: 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVE 220
V++ G + DV TSL+ +Y ++ A K+FDE+P+R+VV+WTA+ GY + G E
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHRE 195
Query: 221 AKTVFDLMPERSNVSWNA-----LIGGLVKIGDLRSARQL---FDEMP-ERNVVSYTTMI 271
A +F M E V ++ ++ V +GDL S + +EM ++N TT++
Sbjct: 196 AIDLFKKMVEMG-VKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLV 254
Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
+ YAK G M ARS+F++ ++D+V WS +I GYA N P E +++F M +N++PD+F
Sbjct: 255 NLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQF 314
Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
+V +S+C+ +G LDL W S + R H L+ + AL+DM AKCG M R E+F+
Sbjct: 315 SIVGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKE 373
Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
M +D+V + I GL+ +GH + + ++F + G++PD F +L C H GL++DG
Sbjct: 374 MKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDG 433
Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
RFF A+ VYA+ + EHY CMVDL GR G L AY L+ MP+ P+A WGALL C+
Sbjct: 434 LRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCR 493
Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
L D +L E V L LEP NAG+YV LSNIY+ RW + VR M ++G++KIPG
Sbjct: 494 LVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGY 553
Query: 572 S 572
S
Sbjct: 554 S 554
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 192/483 (39%), Positives = 296/483 (61%)
Query: 91 AVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL 150
+VF+R+ N WN LL Y QNS+ E +F RE + LV C
Sbjct: 178 SVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS--REN-------WALVSWNCLLGG 228
Query: 151 SVREGTAIHAAVIRWGVD-EDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMI 209
V++ + A ++ DV ++I Y + +I AR++FDE P ++V +WTAM+
Sbjct: 229 FVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMV 288
Query: 210 VGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTT 269
GY + EA+ +FD MPER+ VSWNA++ G V+ + A++LFD MP RNV ++ T
Sbjct: 289 SGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNT 348
Query: 270 MIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
MI GYA+ G ++ A++LF+ P RD V+W+A+I+GY+Q+G EA+++F M + + +
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408
Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
S +S C+ V L+L + L + + V AL+ M KCG+++ A +LF
Sbjct: 409 RSSFSSALSTCADVVALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIEEANDLF 467
Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
+ M +D+VS+ +MI G S HG G A+ F+ M EGL PD+ VL+ACSH GLV+
Sbjct: 468 KEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVD 527
Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
G ++F M Y ++P+ +HYACMVDLLGR G L+ A+ L+ +MP EP A+ WG LLGA
Sbjct: 528 KGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGA 587
Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
+++ + EL E A+++F +EP+N+G YVLLSN+YA++ RW DV +R +M+++G++K+P
Sbjct: 588 SRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVP 647
Query: 570 GCS 572
G S
Sbjct: 648 GYS 650
|
|
| TAIR|locus:2198811 MEF3 "AT1G06140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 191/547 (34%), Positives = 311/547 (56%)
Query: 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--N 98
LT++ + K H QVH+ +I G E D ++ ++ + + L ++T+ FNRI
Sbjct: 11 LTILSQAKTLNHTQQVHAKVIIHGFE-DEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWK 69
Query: 99 PNTFLWNTLLKGYSQNSR--FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGT 156
N WNT+L GYS++ + +V ++ R+ R D + IKAC + + G
Sbjct: 70 RNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGI 129
Query: 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVG 216
IH ++ G+D+D +V SL+++Y + + A+KVFDE+P RN V W ++ GY
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYS 189
Query: 217 DLVEAKTVFDLMPERSNVSWNALI--------GGLV--KIGDLRSARQLFDEMPERNVVS 266
E +F LM + + ++ +AL G + K+G + +++
Sbjct: 190 KDPEVFRLFCLMRD-TGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYL 248
Query: 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
++ID Y K + +AR LFE + DR+VV W+ LISG+A+ + EA +F M +++
Sbjct: 249 QASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESI 308
Query: 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386
P++ L +++ +CS +G+L V Y+ R+ +++ + + +DM A+CGN+ A
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVN-FTSFIDMYARCGNIQMAR 367
Query: 387 ELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446
+F+ MP R+V+S+ SMI I+G +A+ F +M S+ + P+ V F +L+ACSH G
Sbjct: 368 TVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSG 427
Query: 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGAL 506
V++GW+ FE+M Y +VP EHYACMVDLLGR G + A +++MPV+P ASAWGAL
Sbjct: 428 NVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGAL 487
Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566
L AC+++ +++L +A +L +EP+ + YVLLSNIYA A W V VR KM +G R
Sbjct: 488 LSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYR 547
Query: 567 KIPGCSS 573
K G S+
Sbjct: 548 KHVGQSA 554
|
|
| TAIR|locus:2010012 AT1G13410 "AT1G13410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 167/387 (43%), Positives = 249/387 (64%)
Query: 187 ISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246
I+ A KVF EM E+NVV WT+MI GY DLV A+ FDL PER V WN +I G +++
Sbjct: 44 IASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEM 103
Query: 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306
G++ AR LFD+MP R+V+S+ T+++GYA +GDM + +F+ P+R+V +W+ LI GYA
Sbjct: 104 GNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYA 163
Query: 307 QNGQPDEAVKIFSDMCSK-NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365
QNG+ E + F M + +V P++ + ++SAC+++G D WV Y +
Sbjct: 164 QNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVD 223
Query: 366 AHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425
+V AL+DM KCG ++ A E+F+ + RD++S+ +MI GL+ HGHG +A++LF M +
Sbjct: 224 VNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKN 283
Query: 426 EGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK 485
G++PD+V F VL AC H+GLVEDG +F +M ++I+P EH C+VDLL R G L
Sbjct: 284 SGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLT 343
Query: 486 SAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545
A E +N MPV+ A W LLGA K+Y +++GE+ L +LEP+N ++V+LSNIY
Sbjct: 344 QAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYG 403
Query: 546 TADRWLDVCLVRSKMKERGLRKIPGCS 572
A R+ D ++ M++ G +K G S
Sbjct: 404 DAGRFDDAARLKVAMRDTGFKKEAGVS 430
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| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 187/529 (35%), Positives = 307/529 (58%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
Q+H I+K G + +S V + + + + + VF+ + + WN+++ GY N
Sbjct: 216 QLHGFILKSGFGERNS-VGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 274
Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD-EDVFV 173
+ ++FV+++ D T V C+ + G A+H+ ++ ED F
Sbjct: 275 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC 334
Query: 174 GTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS- 232
T L+D+Y K ++ A+ VF EM +R+VVS+T+MI GYA G EA +F+ M E
Sbjct: 335 NT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393
Query: 233 --NV-SWNALIGGLVKIGDLRSARQLFDEMPERNV-----VSYTTMIDGYAKVGDMTSAR 284
+V + A++ + L +++ + + E ++ VS ++D YAK G M A
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS-NALMDMYAKCGSMQEAE 452
Query: 285 SLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS-KNVQPDEFILVSLMSACSQV 343
+F +D+++W+ +I GY++N +EA+ +F+ + K PDE + ++ AC+ +
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512
Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403
D + Y+ R+ S HV +LVDM AKCG + A LF+ + ++D+VS+ M
Sbjct: 513 SAFDKGREIHGYIMRNGY-FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVM 571
Query: 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463
I G +HG G++A++LF++M G+ DE++F +L ACSH GLV++GWRFF M++
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631
Query: 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523
I P+ EHYAC+VD+L RTG L AY + +MP+ P A+ WGALL C+++ D++L E VA
Sbjct: 632 IEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVA 691
Query: 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
++FELEP+N G YVL++NIYA A++W V +R ++ +RGLRK PGCS
Sbjct: 692 EKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740
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| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 172/483 (35%), Positives = 289/483 (59%)
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
VF+ + N W L+KGY N + ++F ++ + V +T L+
Sbjct: 101 VFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV--SWTVMLIG-------F 151
Query: 152 VREGTAIHAAVIRWGV-DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIV 210
+++G A + + D+D TS+I K + AR++FDEM ER+V++WT M+
Sbjct: 152 LQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVT 211
Query: 211 GYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270
GY + +A+ +FD+MPE++ VSW +++ G V+ G + A +LF+ MP + V++ M
Sbjct: 212 GYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAM 271
Query: 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
I G + G++ AR +F++ +R+ +W +I + +NG EA+ +F M + V+P
Sbjct: 272 ISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTF 331
Query: 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390
L+S++S C+ + +L V + L R D+ +V + L+ M KCG + ++ +F+
Sbjct: 332 PTLISILSVCASLASLHHGKQVHAQLVRCQFDVD-VYVASVLMTMYIKCGELVKSKLIFD 390
Query: 391 TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT-PDEVAFTIVLTACSHVGLVE 449
P++D++ + S+I G + HG G +A+ +F M G T P+EV F L+ACS+ G+VE
Sbjct: 391 RFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVE 450
Query: 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509
+G + +E+M++V+ + P HYACMVD+LGR G A E+++SM VEP A+ WG+LLGA
Sbjct: 451 EGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510
Query: 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569
C+ +S +++ E A +L E+EP+N+G+Y+LLSN+YA+ RW DV +R MK R +RK P
Sbjct: 511 CRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSP 570
Query: 570 GCS 572
GCS
Sbjct: 571 GCS 573
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| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 194/541 (35%), Positives = 296/541 (54%)
Query: 43 LIKKCKLQTHLH---QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP 99
L+K C + L ++H ++K G D + ++ ++ ++ + VF+R+
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM-YAKCRQVNEARKVFDRMPER 199
Query: 100 NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIH 159
+ WNT++ GYSQN + + E P T V+ A S + + G IH
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIH 259
Query: 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLV 219
+R G D V + T+L+D+Y K + AR++FD M ERNVVSW +MI Y +
Sbjct: 260 GYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPK 319
Query: 220 EAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSAR---QLFDEMP-ERNVVSYTTMI 271
EA +F M + ++VS + +GDL R +L E+ +RNV ++I
Sbjct: 320 EAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLI 379
Query: 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
Y K ++ +A S+F R +V+W+A+I G+AQNG+P +A+ FS M S+ V+PD F
Sbjct: 380 SMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTF 439
Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFET 391
VS+++A +++ + W+ + RS +D V ALVDM AKCG + A +F+
Sbjct: 440 TYVSVITAIAELSITHHAKWIHGVVMRSCLD-KNVFVTTALVDMYAKCGAIMIARLIFDM 498
Query: 392 MPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451
M R V ++ +MI G HG G+ A+ LF+ M + P+ V F V++ACSH GLVE G
Sbjct: 499 MSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558
Query: 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACK 511
+ F M+ Y+I S +HY MVDLLGR G L A++ + MPV+P + +GA+LGAC+
Sbjct: 559 LKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQ 618
Query: 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGC 571
++ ++ E A RLFEL P + G +VLL+NIY A W V VR M +GLRK PGC
Sbjct: 619 IHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGC 678
Query: 572 S 572
S
Sbjct: 679 S 679
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FHR3 | PP403_ARATH | No assigned EC number | 0.5996 | 0.9337 | 0.9745 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021552001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (561 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 574 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-110 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-95 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-66 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-43 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-42 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 349 bits (896), Expect = e-110
Identities = 185/527 (35%), Positives = 291/527 (55%), Gaps = 14/527 (2%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
+VH+H+++ G E D +V I++ +S + VF+R+ + WN ++ GY +N
Sbjct: 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVS-ARLVFDRMPRRDCISWNAMISGYFEN 266
Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
+E +F + PD T VI AC + R G +H V++ G DV V
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234
SLI +Y A KVF M ++ VSWTAMI GY G +A + LM E+ NV
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNV 385
Query: 235 SWN-----ALIGGLVKIGDLRSARQLFDEMPERNVVSY----TTMIDGYAKVGDMTSARS 285
S + +++ +GDL +L + + ++SY +I+ Y+K + A
Sbjct: 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445
Query: 286 LFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
+F P++DV++W+++I+G N + EA+ F M ++P+ L++ +SAC+++G
Sbjct: 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGA 504
Query: 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIK 405
L + +++ R+ + + AL+D+ +CG M+ A F + +DVVS+ ++
Sbjct: 505 LMCGKEIHAHVLRTGIGFD-GFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLT 562
Query: 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV 465
G HG G AV LF+RM+ G+ PDEV F +L ACS G+V G +F +M+ Y+I
Sbjct: 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622
Query: 466 PSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525
P+ +HYAC+VDLLGR G L AY +N MP+ P + WGALL AC+++ +ELGEL A
Sbjct: 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682
Query: 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
+FEL+P + G Y+LL N+YA A +W +V VR M+E GL PGCS
Sbjct: 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 306 bits (784), Expect = 2e-95
Identities = 151/471 (32%), Positives = 259/471 (54%), Gaps = 20/471 (4%)
Query: 116 RFIEVFTIFVRL-IREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
R E +F L T+ +++AC + S+R A++ V G + D ++
Sbjct: 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161
Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM------ 228
++ ++ K + AR++FDEMPERN+ SW +I G G+ EA +F M
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 229 -PERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYT----TMIDGYAKVGDMTSA 283
R+ V ++ +G R+ +QL + + VV T +ID Y+K GD+ A
Sbjct: 222 AEPRTFV---VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
Query: 284 RSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343
R +F+ P++ VAW+++++GYA +G +EA+ ++ +M V D+F ++ S++
Sbjct: 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 344 GNLDLSNWVDSYLSRSHMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNRDVVSYC 401
L+ + + L R+ L ++A ALVD+ +K G M+ A +F+ MP ++++S+
Sbjct: 339 ALLEHAKQAHAGLIRTGFPLD---IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395
Query: 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461
++I G HG G +AV +F+RM++EG+ P+ V F VL+AC + GL E GW F++M
Sbjct: 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
Query: 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521
+ I P HYACM++LLGR G L AY ++ P +P + W ALL AC+++ ++ELG L
Sbjct: 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515
Query: 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572
A +L+ + P+ +YV+L N+Y ++ R + V +K +GL P C+
Sbjct: 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 4e-66
Identities = 122/368 (33%), Positives = 204/368 (55%), Gaps = 10/368 (2%)
Query: 92 VFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLS 151
VF ++ + F WN L+ GY++ F E ++ R++ PD YTFP V++ C +
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
Query: 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVG 211
+ G +HA V+R+G + DV V +LI +Y K ++ AR VFD MP R+ +SW AMI G
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 212 YASVGDLVEAKTVFDLMPERSN----VSWNALIGGLVKIGDLRSARQLFDEMPER----N 263
Y G+ +E +F M E S ++ ++I +GD R R++ + + +
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCS 323
V ++I Y +G A +F +D V+W+A+ISGY +NG PD+A++ ++ M
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 324 KNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383
NV PDE + S++SAC+ +G+LD+ + R + +S V AL++M +KC +D
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCID 441
Query: 384 RAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443
+A E+F +P +DV+S+ S+I GL ++ +A+ F +ML L P+ V L+AC+
Sbjct: 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA 500
Query: 444 HVGLVEDG 451
+G + G
Sbjct: 501 RIGALMCG 508
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 2e-43
Identities = 95/346 (27%), Positives = 177/346 (51%), Gaps = 9/346 (2%)
Query: 56 VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNS 115
V+ H+ G E D ++ + L H L + +F+ + N W T++ G
Sbjct: 145 VYWHVESSGFEPDQYMMNR-VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203
Query: 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT 175
+ E F +F + + + + TF ++++A + + S R G +H V++ GV D FV
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263
Query: 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---- 231
+LID+Y K +I AR VFD MPE+ V+W +M+ GYA G EA ++ M +
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 232 SNVSWNALIGGLVKIGDLRSARQ----LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287
+++ +I ++ L A+Q L ++V+ T ++D Y+K G M AR++F
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 288 EAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347
+ P +++++W+ALI+GY +G+ +AV++F M ++ V P+ ++++SAC G +
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393
+ +S +H RA A ++++ + G +D A + P
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP 489
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 7e-42
Identities = 105/409 (25%), Positives = 202/409 (49%), Gaps = 33/409 (8%)
Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
D+ + + + C +V EG+ + + + V +G +++ ++ + E+ A V
Sbjct: 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYV 143
Query: 194 FDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLM---PERSNV-SWNALIGGLVKIGDL 249
F +MPER++ SW ++ GYA G EA ++ M R +V ++ ++ I DL
Sbjct: 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203
Query: 250 RSARQL------FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALIS 303
R++ F + +VV+ +I Y K GD+ SAR +F+ P RD ++W+A+IS
Sbjct: 204 ARGREVHAHVVRFGFELDVDVVN--ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261
Query: 304 GYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363
GY +NG+ E +++F M +V PD + S++SAC +G+ L + Y+ ++ +
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRM 423
+ V +L+ M G+ A ++F M +D VS+ +MI G +G +A+ + M
Sbjct: 322 DVS-VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 424 LSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV----YAIVPSPEHYACMVDLLG 479
+ ++PDE+ VL+AC+ +G ++ G + E + Y +V + ++++
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN-----ALIEMYS 435
Query: 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528
+ + A E+ +++P E +W + I G + NR FE
Sbjct: 436 KCKCIDKALEVFHNIP-EKDVISW----------TSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 6e-22
Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 11/259 (4%)
Query: 55 QVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQN 114
Q+H ++K G+ D + I + +S + + VF+ + T WN++L GY+ +
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDM-YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 115 SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174
E ++ + D++TF ++I+ S + + HA +IR G D+
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231
T+L+DLY K + AR VFD MP +N++SW A+I GY + G +A +F+ M
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPERN-----VVSYTTMIDGYAKVGDMTSARS 285
++V++ A++ G ++F M E + + Y MI+ + G + A +
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
Query: 286 LFEAAPDRDVV-AWSALIS 303
+ AP + V W+AL++
Sbjct: 484 MIRRAPFKPTVNMWAALLT 502
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 5e-18
Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 33/314 (10%)
Query: 220 EAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYA 275
EA L+ + ++N L+ D+ A ++ + E + YTT+I A
Sbjct: 424 EAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483
Query: 276 KVGDMTSARSLFE----AAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331
K G + + +F A + +V + ALI G A+ GQ +A + M SKNV+PD
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543
Query: 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV-IAALVDMNAKCGNMDRAAELFE 390
+ +L+SAC Q G +D + V + + + H+ + AL+ A G +DRA E+++
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 391 TMPNRDV----------VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440
+ ++ V+ CS A+S++D M +G+ PDEV F+ ++
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDF------ALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 441 ACSHVGLVEDGWRFFEAMQNVYA--IVPSPEHYACMVDLLGRTGHLKSA---YELLNSMP 495
H G ++ FE +Q+ I Y+ ++ + K A YE + S+
Sbjct: 658 VAGHAGDLDKA---FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 496 VEPHASAWGALLGA 509
+ P S AL+ A
Sbjct: 715 LRPTVSTMNALITA 728
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-13
Identities = 87/385 (22%), Positives = 162/385 (42%), Gaps = 36/385 (9%)
Query: 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLI 178
E F F +LIR P TF +++ C+ + + V G+ D + T+LI
Sbjct: 424 EAFR-FAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479
Query: 179 DLYGKRKEISCARKVFDEMP----ERNVVSWTAMIVGYASVGDLVEAKTVFDLM------ 228
K ++ +VF EM E NV ++ A+I G A G + +A + +M
Sbjct: 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539
Query: 229 PERSNVSWNALIGGLVKIGDLRSARQLFDEM--------PERNVVSYTTMIDGYAKVGDM 280
P+R V +NALI + G + A + EM P+ ++ ++ A G +
Sbjct: 540 PDR--VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH--ITVGALMKACANAGQV 595
Query: 281 TSARSLFEAAPDRDV----VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336
A+ +++ + ++ ++ ++ +Q G D A+ I+ DM K V+PDE +L
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE---TMP 393
+ G+LD + + + + L ++L+ + N +A EL+E ++
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 394 NRDVVS-YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452
R VS ++I L +A+ + M GL P+ + ++I+L A + G
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
Query: 453 RFFEAMQNVYAIVPSPEHYACMVDL 477
+ I P+ C+ L
Sbjct: 775 DLLSQAK-EDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPER----NVVSYTTMIDGYAK 276
V++N LI G K G + A +LF+EM +R NV +Y+ +IDG K
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 8e-12
Identities = 68/306 (22%), Positives = 118/306 (38%), Gaps = 49/306 (16%)
Query: 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358
++ + +GQ ++A+K+ M V DE V+L C ++ + V S
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVS 418
SH L + A++ M + G + A +F MP RD+ S+ ++ G + G+ +A+
Sbjct: 115 SHPSLG-VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 419 LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV--YAIVPSPEHYACMVD 476
L+ RML G+ PD F VL C G + D R E +V + + ++
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTC---GGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLG---------------------------- 508
+ + G + SA + + MP S W A++
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDCIS-WNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
Query: 509 -------ACKLYSDIELGE----LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557
AC+L D LG V F ++ S L +Y + W + V
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS---LIQMYLSLGSWGEAEKVF 346
Query: 558 SKMKER 563
S+M+ +
Sbjct: 347 SRMETK 352
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342
DVV ++ LI GY + G+ +EA+K+F++M + ++P+ + L+ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444
DVV+Y ++I G G +A+ LF+ M G+ P+ ++I++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 8e-07
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326
V +++LISGY + G+ +EA+++F +M K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE 330
V ++ LI G + G+ +EA+++F +M + ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 52 HLHQVHSHIIKKGLEQDHSLVAH--FISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK 109
H Q H+ +I+ G D +VA+ + L +S + + VF+R+ N WN L+
Sbjct: 343 HAKQAHAGLIRTGFPLD--IVANTALVDL-YSKWGRMEDARNVFDRMPRKNLISWNALIA 399
Query: 110 GYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158
GY + R + +F R+I E P+ TF V+ AC + +G I
Sbjct: 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 99 PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148
P+ +NTL+ GY + + E +F + + P+ YT+ ++I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNV 264
V++N+LI G K G L A +LF EM E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE 432
V+Y ++I GL G +A+ LF M G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
V++N LI GL K G + A +LF EM ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 9e-05
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 294 DVVAWSALISGYAQNGQPDEAVKIFSDM 321
DVV ++ LI G + G+ DEAV++ +M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFE 288
+ +VV+Y T+IDG + G + A L +
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPER----NVVSWTAMIVGYA 213
DV +LID Y K+ ++ A K+F+EM +R NV +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428
V+Y S+I G G +A+ LF M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 265 VSYTTMIDGYAKVGDMTSARSLFE 288
V+Y ++I GY K G + A LF+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFK 24
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 203 VSWTAMIVGYASVGDLVEAKTVFDLMPER 231
V++ ++I GY G L EA +F M E+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 8e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMP 260
V++N LI GL + G + A +L DEM
Sbjct: 8 VTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484
GL D +T +++ C+ G V+ + F M N + + + ++D R G +
Sbjct: 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQV 523
Query: 485 KSA---YELLNSMPVEPHASAWGALLGAC 510
A Y ++ S V+P + AL+ AC
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISAC 552
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 367 HVIAALVDMNAKCGNMDRAAELFETMPNR----DVVSYCSMIKGL 407
+I K G ++ A +LF M R +V +Y +I GL
Sbjct: 8 TLIDGYC----KKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
+ ++AL+ A+ G PD A+ + +M + ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265
++NAL+ L K GD A + +EM +
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.69 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.46 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.3 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.2 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.16 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.12 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.06 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.02 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.02 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.99 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.97 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.87 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.86 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.78 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.74 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.67 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.66 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.65 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.64 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.58 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.53 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.48 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.4 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.35 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.33 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.32 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.3 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.27 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.24 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.21 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.19 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.18 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.05 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.05 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.04 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.04 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.01 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.94 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.92 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.89 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.87 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.82 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.75 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.69 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.68 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.63 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.6 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.56 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.51 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.48 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.45 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.43 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.43 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.4 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.4 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.36 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.33 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.32 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.22 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.2 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.16 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.16 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.15 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.12 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.11 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.1 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.08 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.07 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.92 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.83 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.8 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.8 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.76 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.75 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.74 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.61 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.57 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.56 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.54 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.5 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.49 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.37 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.37 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.36 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.34 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.3 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.25 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.25 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.21 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.12 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.09 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.06 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.06 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.05 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.05 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.02 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.93 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.92 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.64 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.48 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.42 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.4 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.36 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.3 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.1 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.06 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.04 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.91 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.9 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.55 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.47 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.32 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.25 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.19 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.11 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.0 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.91 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.6 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.54 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.51 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.5 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.31 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.3 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.3 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.24 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.23 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.22 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.2 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.06 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 92.93 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.77 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.76 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.7 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.54 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.46 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.31 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 91.84 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.68 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.68 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.6 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.49 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.47 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.19 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.14 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.1 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.08 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 91.04 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 90.73 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 90.72 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.71 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.59 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.49 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.44 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.27 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.19 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.18 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.12 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.88 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.87 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 89.84 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.76 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.73 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.69 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.68 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.6 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.55 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.36 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.15 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 89.12 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.04 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.03 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.32 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 88.29 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.08 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.54 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.32 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.09 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.03 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.79 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.57 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 86.43 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.95 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.92 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 85.5 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.06 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 84.73 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 84.73 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.14 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 84.13 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.96 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.72 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.7 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 83.67 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 83.47 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.87 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.12 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.95 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 81.95 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 81.77 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.44 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 80.63 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 80.48 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 80.07 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-81 Score=668.37 Aligned_cols=549 Identities=34% Similarity=0.605 Sum_probs=522.3
Q ss_pred hhhhhhccC-CCCCCCCcchHHHHHHHHHccC---CchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhh
Q 046956 19 MLPNCSRSA-PINFPKPSCLLSALTLIKKCKL---QTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94 (574)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~ 94 (574)
++..|..+. ....|+..+ +..++..|+. .....++|..+++.|+.||+.++|.++ .+|+++|+++.|.++|+
T Consensus 171 A~~~f~~M~~~g~~Pd~~t---~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li-~~y~k~g~~~~A~~lf~ 246 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYT---FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI-TMYVKCGDVVSARLVFD 246 (857)
T ss_pred HHHHHHHHHHcCCCCChhH---HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH-HHHhcCCCHHHHHHHHh
Confidence 344444443 233455555 5666666754 445589999999999999999999999 99999999999999999
Q ss_pred ccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchH
Q 046956 95 RIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174 (574)
Q Consensus 95 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 174 (574)
+|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHHHHHHHHccCChH
Q 046956 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLR 250 (574)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~ 250 (574)
+.|+.+|++.|++++|.++|++|.++|..+|+++|.+|++.|++++|+++|++|. .||..||+.++.+|++.|+++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 9999999999999999999999999999999999999999999999999999995 479999999999999999999
Q ss_pred HHHHHHhcCC----CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046956 251 SARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326 (574)
Q Consensus 251 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 326 (574)
.|.++++.+. .++..+|++|+++|+++|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 9999999442 588999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 046956 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406 (574)
Q Consensus 327 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 406 (574)
.||..||..++.+|++.|+++.+.+++..+.+.|..++.. +++.++++|+++|++++|.++|+.+ .+|..+||.+|.+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~-~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~ 563 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTG 563 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce-echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHH
Confidence 9999999999999999999999999999999999999988 9999999999999999999999999 9999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
|+++|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999667999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
|.+++++|+.+||..+|.+++.+|..+|+.+.++...+++++++|+++..|..|+++|...|+|++|.++.+.|+++|++
T Consensus 644 A~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 644 AYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccC
Q 046956 567 KIPGCSSL 574 (574)
Q Consensus 567 ~~~~~s~~ 574 (574)
|+||+|||
T Consensus 724 k~~g~s~i 731 (857)
T PLN03077 724 VDPGCSWV 731 (857)
T ss_pred CCCCccEE
Confidence 99999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-73 Score=602.85 Aligned_cols=523 Identities=27% Similarity=0.460 Sum_probs=483.8
Q ss_pred HHHHHHHc---cCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCC
Q 046956 40 ALTLIKKC---KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSR 116 (574)
Q Consensus 40 ~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~ 116 (574)
+..++..| +....+.++|..+++.|..++..++|.++ ..|+++|+++.|.++|++|+.||.++||++|.+|++.|+
T Consensus 89 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li-~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~ 167 (857)
T PLN03077 89 YVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML-SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167 (857)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCC
Confidence 44455555 45566789999999999999999999999 999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHcc
Q 046956 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196 (574)
Q Consensus 117 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (574)
+++|+++|++|...|+.||..||+.++++|+..++++.+.+++..+.+.|+.||..+++.|+.+|+++|+++.|.++|++
T Consensus 168 ~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHHHHHHHHccCChHHHHHHHhcCC----CCchhHHH
Q 046956 197 MPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYT 268 (574)
Q Consensus 197 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 268 (574)
|.++|..+||++|.+|++.|++++|+++|++|. .||..||+.++.+|++.|+++.+.+++..+. .||..+|+
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 999999999999999999999999999999996 4799999999999999999999999998442 58999999
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcch
Q 046956 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348 (574)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 348 (574)
+++.+|+++|++++|.++|++|..+|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 428 (574)
+.++++.+.+.|..++.. +++.|+++|+++|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++
T Consensus 408 a~~l~~~~~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 408 GVKLHELAERKGLISYVV-VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHhCCCcchH-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 999999999999999988 9999999999999999999999999999999999999999999999999999999986 58
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046956 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 508 (574)
.||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+++|.++|++++|.++|+++ .||..+|+.++.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~ 562 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLT 562 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHH
Confidence 999999999999999999999999999999886 88888888888888888888888888888887 678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCchHHHHHHHHHH-hCCCccC
Q 046956 509 ACKLYSDIELGELVANRLFELE-PQNAGSYVLLSNIYATADRWLDVCLVRSKMK-ERGLRKI 568 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~ 568 (574)
+|.++|+.++|+++|++|.+.+ .+|..+|..+..+|.+.|++++|.++|++|. +.|+.|+
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 8888888888888888887753 3346667777777888888888888888887 5666654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-72 Score=582.82 Aligned_cols=476 Identities=31% Similarity=0.569 Sum_probs=462.4
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCC-CCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHH
Q 046956 98 NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE-AVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTS 176 (574)
Q Consensus 98 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 176 (574)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 5577899999999999999999999999998865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHccCChHHH
Q 046956 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE----RSNVSWNALIGGLVKIGDLRSA 252 (574)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a 252 (574)
|+.+|++.|+++.|.++|++|.+||..+||+++.+|++.|++++|+++|++|.+ ++..+|+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999964 6889999999999999999999
Q ss_pred HHHHhcCC----CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 046956 253 RQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328 (574)
Q Consensus 253 ~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 328 (574)
.+++..+. .+|..+|++|+++|+++|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99987321 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 046956 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLS 408 (574)
Q Consensus 329 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 408 (574)
|..||+.++.+|++.|+++.|.+++..+.+.|..++.. +++.|+++|+++|++++|.++|++|.++|..+||.||.+|+
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~-~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV-ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999988 99999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 046956 409 IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 488 (574)
++|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987799999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 046956 489 ELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568 (574)
Q Consensus 489 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 568 (574)
+++++++..|+..+|+.++.+|..+|+++.|..++++++++.|++...|..|+.+|.+.|+|++|.+++++|+++|+++.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccC
Q 046956 569 PGCSSL 574 (574)
Q Consensus 569 ~~~s~~ 574 (574)
||+|||
T Consensus 563 ~g~s~i 568 (697)
T PLN03081 563 PACTWI 568 (697)
T ss_pred CCeeEE
Confidence 999996
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-64 Score=522.71 Aligned_cols=495 Identities=18% Similarity=0.275 Sum_probs=409.2
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHhhccCCC-----ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHH
Q 046956 66 EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNP-----NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFP 140 (574)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 140 (574)
.++...+..++ ..+.+.|++++|.++|++|..+ +...++.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y-~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAY-NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHH-HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 44556666666 6666777777777777777543 334455566667777777777777777753 6777777
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC----CCChhhHHHHHHHHHhcC
Q 046956 141 LVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP----ERNVVSWTAMIVGYASVG 216 (574)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 216 (574)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 7777777777777777777777777777777777777777777777777777777776 367777777777777777
Q ss_pred ChHHHHHHHhhcCC----CCcchHHHHHHHHHccCChHHHHHHHhcCC------CCchhHHHHHHHHHHhcCChHHHHHH
Q 046956 217 DLVEAKTVFDLMPE----RSNVSWNALIGGLVKIGDLRSARQLFDEMP------ERNVVSYTTMIDGYAKVGDMTSARSL 286 (574)
Q Consensus 217 ~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 286 (574)
++++|+++|+.|.+ ||..+|+.++.+|++.|++++|.+++++|. .||..+|++++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777743 577777777777777777777777777552 58899999999999999999999999
Q ss_pred HhhCCC----CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCC
Q 046956 287 FEAAPD----RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362 (574)
Q Consensus 287 ~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (574)
|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 998875 5678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMP----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438 (574)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 438 (574)
++.. +|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 682 pd~~-tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 LGTV-SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9988 99999999999999999999999985 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh----hc-------------------CCHHHHHHHHHhC-
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG----RT-------------------GHLKSAYELLNSM- 494 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~- 494 (574)
+.+|.+.|++++|.+++++|.+. |+.||..+|+.++..+. ++ +..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999987 99999999999986643 22 2346799999999
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCchhHHHHHHHHHhcCCc-hHHHHHHHHHHhCCCccCCC
Q 046956 495 --PVEPHASAWGALLGACKLYSDIELGELVANRLFEL-EPQNAGSYVLLSNIYATADRW-LDVCLVRSKMKERGLRKIPG 570 (574)
Q Consensus 495 --~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ 570 (574)
++.||..+|..++.++...+..+.+..+++.+... .+.+...|..|++.+ |++ ++|..++++|.+.|+.|+-.
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcc
Confidence 78899999999997777888888888888765533 466678899999876 433 68999999999999977653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-61 Score=499.01 Aligned_cols=431 Identities=23% Similarity=0.416 Sum_probs=405.8
Q ss_pred CCCCcchHHHHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHH
Q 046956 31 FPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKG 110 (574)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 110 (574)
.|+..++..++..+..++....+.++|..+.+.|+.||+.++|.++ .+|+++|+++.|.++|++|+.||.++||+++.+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li-~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL-LMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH-HHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 3444555455555555556667799999999999999999999999 999999999999999999999999999999999
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHH
Q 046956 111 YSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCA 190 (574)
Q Consensus 111 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 190 (574)
|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|+.+.+.+++..+.+.|+.||..+|++|+++|+++|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHHHHHHHHccCChHHHHHHHhcCC----CC
Q 046956 191 RKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNVSWNALIGGLVKIGDLRSARQLFDEMP----ER 262 (574)
Q Consensus 191 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~ 262 (574)
.++|++|.++|+++||++|.+|++.|+.++|+++|++|. .||..||+.++.+|++.|++++|.+++..|. .+
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999995 4799999999999999999999999998543 68
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
|..++++|+++|+++|++++|.++|++|.++|+.+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHH-hCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHHcCChHHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSR-SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-NRDVVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
.|.+++|.++|+.|.+ .+..|+.. +|+.++++|++.|++++|.++++++. +|+..+|+.++.+|..+|+.+.|..++
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~-~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAM-HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCcc-chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999986 58888877 99999999999999999999999997 799999999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 046956 421 DRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466 (574)
Q Consensus 421 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 466 (574)
+++.+ +.|+ ..+|..+++.|.+.|++++|.++++.|.+. |+..
T Consensus 518 ~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 518 EKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99976 5565 569999999999999999999999999987 7754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=487.58 Aligned_cols=476 Identities=17% Similarity=0.234 Sum_probs=434.3
Q ss_pred hHHHHHHhhccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcchHHHHHHHHhccCCcHHHHHHHHHH
Q 046956 86 LSYSTAVFNRIV--NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVLSVREGTAIHAAV 162 (574)
Q Consensus 86 ~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 162 (574)
...+....+... .++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|..+++.|
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 353 EENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 344444455543 56788899999999999999999999999999985 467778889999999999999999999988
Q ss_pred HHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC----CChhhHHHHHHHHHhcCChHHHHHHHhhcC----CCCcc
Q 046956 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE----RNVVSWTAMIVGYASVGDLVEAKTVFDLMP----ERSNV 234 (574)
Q Consensus 163 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~ 234 (574)
.. ||..+|+.++.+|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..
T Consensus 433 ~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 433 RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred CC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 63 9999999999999999999999999999974 899999999999999999999999999998 47999
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcCC----CCchhHHHHHHHHHHhcCChHHHHHHHhhCC------CCCHhHHHHHHHH
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP------DRDVVAWSALISG 304 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~ 304 (574)
+|+.++.+|++.|++++|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999663 5999999999999999999999999999984 4799999999999
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHH
Q 046956 305 YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384 (574)
Q Consensus 305 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 384 (574)
|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|..+|+.|.+.|..|+.. +|+.++.+|++.|++++
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~-TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV-FFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred HHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 385 AAELFETMP----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 385 A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999997 4899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh----c-------------------C
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKL----Y-------------------S 514 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------~ 514 (574)
. |+.||..+|+.++.+|.+.|++++|.+++++| +..||..+++.++..|.+ . +
T Consensus 748 ~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 748 L-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred c-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence 7 99999999999999999999999999999998 688999999999866542 1 1
Q ss_pred CHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 046956 515 DIELGELVANRLFELE-PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (574)
..+.|..+|++|.+.. .++..+|..+..++...+..+.+..+++.|...+..+
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence 2467889999999874 4456777777788888888999888888887666443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=308.57 Aligned_cols=534 Identities=10% Similarity=0.015 Sum_probs=265.8
Q ss_pred cchhhhhhccCCCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhcc
Q 046956 17 SSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRI 96 (574)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~ 96 (574)
..+...|.......+.++.....+..++...++...+......+.+.. +.+..++..+. ..+.+.|+.++|.+.|+++
T Consensus 312 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 312 EQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLG-EAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH-HHHHHCCCHHHHHHHHHHH
Confidence 334444544443333333333444555555555555555555555443 33444454444 6666666666666666655
Q ss_pred C---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcch
Q 046956 97 V---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFV 173 (574)
Q Consensus 97 ~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 173 (574)
. +.+...|..+...+...|++++|.+.|+++.+.... +......++..+.+.|++++|..+++.+.... +.+..+
T Consensus 390 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 467 (899)
T TIGR02917 390 TELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASL 467 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHH
Confidence 3 223445555555556666666666666555544321 12223334444445555555555555554432 333444
Q ss_pred HHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHH----------
Q 046956 174 GTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWN---------- 237 (574)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~---------- 237 (574)
+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++... +..++.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Confidence 45555555555555555555544432 22333444444444455555555554444321 223344
Q ss_pred ------------------------HHHHHHHccCChHHHHHHHhcCC---CCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 046956 238 ------------------------ALIGGLVKIGDLRSARQLFDEMP---ERNVVSYTTMIDGYAKVGDMTSARSLFEAA 290 (574)
Q Consensus 238 ------------------------~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 290 (574)
.++..+...|++++|...++.+. +.+...|..++..|.+.|++++|...|+.+
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444455555555555544221 233444555555555555555555555443
Q ss_pred CC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhh
Q 046956 291 PD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367 (574)
Q Consensus 291 ~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 367 (574)
.+ .+...+..++.++...|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.++....
T Consensus 628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 704 (899)
T TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL-- 704 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH--
Confidence 32 233444455555555555555555555554431 223444444555555555555555555555444322211
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
.+..++..+.+.|++++|.+.|+.+. .|+..++..++.++...|++++|...++++.+.. +.+...+..+...|...
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 34445555555555555555555544 2333444455555555555555555555555432 23334555555555555
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
|++++|.+.|+++.+ ..+.+...+..++..+...|+ .+|+++++++ ...| +...+..+...+...|++++|...+
T Consensus 784 g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 784 KDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555554 233445555555555555555 5555555554 2222 2334444455555566666666666
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+++++.+|.++.++..++.++...|++++|.+++++|+
T Consensus 861 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 861 RKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666665554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=306.22 Aligned_cols=540 Identities=13% Similarity=0.044 Sum_probs=387.2
Q ss_pred CccchhhhhhccCCCCCCCCcchHHHHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhh
Q 046956 15 SCSSMLPNCSRSAPINFPKPSCLLSALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFN 94 (574)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~ 94 (574)
.+..++..|......++.....+.....++...++...+...+..+++.. +.++.....+. .++.+.|+.++|...++
T Consensus 276 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la-~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 276 NYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLA-SIQLRLGRVDEAIATLS 353 (899)
T ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH-HHHHHCCCHHHHHHHHH
Confidence 35567777777665554433343445556666788888888888888765 34556666666 88999999999999998
Q ss_pred ccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCc
Q 046956 95 RIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDV 171 (574)
Q Consensus 95 ~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 171 (574)
.+. +.+...++.+...+.+.|++++|.++|+++.+... .+...+..+...+...|++++|.+.++.+.+.+. ...
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~ 431 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELG 431 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cch
Confidence 875 34667899999999999999999999999987642 2556677788888899999999999999988753 334
Q ss_pred chHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHc
Q 046956 172 FVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVK 245 (574)
Q Consensus 172 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 245 (574)
.....++..+.+.|++++|..+++++.. .+..+|..+...+...|++++|.+.|+++.+. +...+..+...+..
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 5667788899999999999999998875 46678999999999999999999999998653 45567778889999
Q ss_pred cCChHHHHHHHhcCC---CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHH
Q 046956 246 IGDLRSARQLFDEMP---ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFS 319 (574)
Q Consensus 246 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 319 (574)
.|++++|...++.+. +.+..++..+...+.+.|+.++|...++++.. .+...+..++..+...|++++|..+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998542 34566777777777777777777777766532 234455556666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----
Q 046956 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN----- 394 (574)
Q Consensus 320 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 394 (574)
++.+. .+.+...|..+..++...|++++|...++.+.+...... ..+..++..+.+.|++++|...|+++.+
T Consensus 592 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 668 (899)
T TIGR02917 592 EAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA--LALLLLADAYAVMKNYAKAITSLKRALELKPDN 668 (899)
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 66543 233455555556666666666666666665554432221 1445555555555555555555554431
Q ss_pred --------------------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 395 --------------------------------RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442 (574)
Q Consensus 395 --------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 442 (574)
.+...+..+...+...|++++|...|+++... .|+..++..++.++
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 23344555555666666666666666666653 34445555666666
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
.+.|++++|.+.++++.+ ..+.+...+..++..|...|++++|.+.|+++ ...| +...+..+...+...|+ .+|+
T Consensus 747 ~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHH
Confidence 677777777777777665 44556677777778888888888888888777 3333 56667777778888888 7788
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
..++++++..|+++..+..++.++...|++++|.++++++.+.+..
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8888888888888888888888888888999999998888887653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-24 Score=234.21 Aligned_cols=509 Identities=12% Similarity=0.057 Sum_probs=368.5
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCc
Q 046956 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRF 117 (574)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~ 117 (574)
..++..-++.+.+...+..+.+.. +++..........+....|+.++|++.|+++. +.+...+..+...+...|++
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 345556667777777777776654 33332222222123334578888888888875 23455677777888888888
Q ss_pred hHHHHHHHHhHhCCCC--------------------------------CCcch-------------------H--HHHHH
Q 046956 118 IEVFTIFVRLIREEAV--------------------------------PDKYT-------------------F--PLVIK 144 (574)
Q Consensus 118 ~~a~~~~~~m~~~~~~--------------------------------~~~~~-------------------~--~~ll~ 144 (574)
++|+..++++.+.... |+... + .....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 8888888876543210 11000 0 01123
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CCh---hhHH------------H
Q 046956 145 ACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNV---VSWT------------A 207 (574)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~ 207 (574)
.+...|++++|+..|++.++.. +.+...+..|..++.+.|++++|...|++..+ |+. ..|. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3456788888888888888764 34667788888888888888888888887764 321 1121 1
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCC---CCchhHHHHHHHHHHhcCChH
Q 046956 208 MIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMP---ERNVVSYTTMIDGYAKVGDMT 281 (574)
Q Consensus 208 li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 281 (574)
....+.+.|++++|+..|+++.+. +...+..+...+...|++++|++.|+... +.+...+..+...|. .++.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 234566788888888888887653 44466677888888888888888888432 344556666777664 45778
Q ss_pred HHHHHHhhCCCCC------------HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchH
Q 046956 282 SARSLFEAAPDRD------------VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349 (574)
Q Consensus 282 ~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 349 (574)
+|+..++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|+.++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888887765321 1234556777888999999999999998763 23566777888899999999999
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC----Chh---------HHHHHHHHHHHcCChHHH
Q 046956 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR----DVV---------SYCSMIKGLSIHGHGRQA 416 (574)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~~~~~~a 416 (574)
...++.+.+..+.... .+..+...+...|+.++|...++.+... +.. .+..+...+...|+.++|
T Consensus 515 ~~~l~~al~~~P~~~~--~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQKPNDPE--QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHcCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999876544333 4555666778899999999999988632 111 123456678889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 046956 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 417 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (574)
..+++. .+.+...+..+...+.+.|++++|+..|+++.+ ..+.+...+..++..|...|++++|++.++.+ .
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999872 245556778888899999999999999999997 44556888999999999999999999999988 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 496 VEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNA------GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 496 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..|+ ...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|...+++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4554 45566677888999999999999999999876654 3667789999999999999999998863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-23 Score=230.98 Aligned_cols=516 Identities=12% Similarity=0.050 Sum_probs=277.1
Q ss_pred HHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC--CCCh-hhH-------------
Q 046956 41 LTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--NPNT-FLW------------- 104 (574)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~------------- 104 (574)
.++-.+-++.+.+++....+.... +.++.++.... .++.+.|+.++|.+.+++.. .|+. ..+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~-~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARF-RLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 333333445555566666555544 34677777777 88899999999999999885 3332 222
Q ss_pred ---HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc-hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046956 105 ---NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY-TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180 (574)
Q Consensus 105 ---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 180 (574)
......+...|++++|++.|+++.+.+. |+.. ............|+.++|++.++++.+.. +.+...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 2234467889999999999999987632 2322 11111222335689999999999999875 4466778889999
Q ss_pred HHcCCChHHHHHHHccCCCCCh------hhH-----------------HH------------------------------
Q 046956 181 YGKRKEISCARKVFDEMPERNV------VSW-----------------TA------------------------------ 207 (574)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~------~~~-----------------~~------------------------------ 207 (574)
+...|+.++|...++++.+... ..| ..
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999988753110 001 00
Q ss_pred ----HHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHccCChHHHHHHHhcCCC--Cch---hHH--------
Q 046956 208 ----MIVGYASVGDLVEAKTVFDLMPE--R-SNVSWNALIGGLVKIGDLRSARQLFDEMPE--RNV---VSY-------- 267 (574)
Q Consensus 208 ----li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~-------- 267 (574)
....+...|++++|+..|++..+ | +...+..+..++.+.|++++|...|++..+ |+. ..|
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 01223334455555555544433 1 333444444455555555555554442211 110 001
Q ss_pred ----HHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 268 ----TTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340 (574)
Q Consensus 268 ----~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 340 (574)
......+.+.|++++|++.|+++.+ .+...+..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1112234444555555555544432 233344444455555555555555555544431 11222333333333
Q ss_pred hccCCcchHHHHHHHHHHhCCCCC-------hhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHc
Q 046956 341 SQVGNLDLSNWVDSYLSRSHMDLS-------RAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGLSIH 410 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 410 (574)
. .++.++|..+++.+........ ....+..++..+...|++++|++.|++..+ | +...+..+...|...
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 2 2334444444433321110000 001233345555666777777777776652 3 344566666677777
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc---------------------------
Q 046956 411 GHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY--------------------------- 462 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------------- 462 (574)
|++++|...++++.+. .|+ ...+..+...+...|+.++|...++.+....
T Consensus 509 G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 7777777777776653 333 3344444444556677777777776543210
Q ss_pred -----------CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 463 -----------AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 463 -----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
..+.+...+..+...+.+.|++++|++.|+++ ...| +...+..+...+...|++++|+..++++++.
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 01122233344455555555555555555554 2233 2444555555555556666666666655555
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.|+++..+..++.++...|++++|.++++++.+..
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 55555555556666666666666666666555443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-25 Score=206.91 Aligned_cols=439 Identities=15% Similarity=0.146 Sum_probs=359.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 183 (574)
-..+..-..+.|++++|.+.-...-+.+. .+......+-..+.+..+++....--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 44556666788999999887665544432 233333334445556666666655555544443 3346788889999999
Q ss_pred CCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchH---HHHHHHHHccCChHHHHHHHh
Q 046956 184 RKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSW---NALIGGLVKIGDLRSARQLFD 257 (574)
Q Consensus 184 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~ 257 (574)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|....+-++..| +.+...+-..|++++|...+.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999998876 3567899999999999999999999998877555332 334455556788888888887
Q ss_pred cCC--CCc-hhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-H
Q 046956 258 EMP--ERN-VVSYTTMIDGYAKVGDMTSARSLFEAAPDRD---VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD-E 330 (574)
Q Consensus 258 ~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~ 330 (574)
+.. +|. ...|+.|...+-..|++..|+..|++..+-| ..+|-.|...|...+.+++|+..|.+.... .|+ .
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A 286 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHA 286 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcch
Confidence 332 233 4689999999999999999999999987643 568999999999999999999999998764 454 5
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHH
Q 046956 331 FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGL 407 (574)
Q Consensus 331 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 407 (574)
..+..+...|...|.++.|+..+++.++..+.... .|+.|..++-..|+..+|...|++... | ...+.+.|...|
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~--Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD--AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchH--HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 67777888889999999999999999987766655 699999999999999999999999873 3 457889999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLK 485 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 485 (574)
...|.+++|..+|.+..+ +.|... .++.|...|-+.|++++|+..|++++ .+.|+ ...|+.+...|...|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999998 788764 89999999999999999999999998 45777 588999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHH
Q 046956 486 SAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 486 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (574)
.|++.+.++ .++|. ....+.+...|...|+..+|++.|+.+++++|+.+.++..++.++.--.+|.+-
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 999999988 77776 567888889999999999999999999999999999999999988877777663
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-21 Score=202.83 Aligned_cols=500 Identities=10% Similarity=0.016 Sum_probs=313.5
Q ss_pred cCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCC--CChhhHHHHHHHHHhCCCchHHHHHHH
Q 046956 48 KLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVN--PNTFLWNTLLKGYSQNSRFIEVFTIFV 125 (574)
Q Consensus 48 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~ 125 (574)
++...+...+.+.++.... ++.++..+. .+|.+.|+.++|+..+++... |+-..|..++..+ +++++|..+++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA-~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLA-EAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 4555666667777666633 356666666 888888888888888877752 3223333333222 77777777777
Q ss_pred HhHhCCCCCCcchHHHH----------------------------------------HHHHhccCCcHHHHHHHHHHHHh
Q 046956 126 RLIREEAVPDKYTFPLV----------------------------------------IKACSHVLSVREGTAIHAAVIRW 165 (574)
Q Consensus 126 ~m~~~~~~~~~~~~~~l----------------------------------------l~~~~~~~~~~~a~~~~~~~~~~ 165 (574)
++...... +...+..+ ...+...|++++|+.++..+.+.
T Consensus 133 ~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 133 ELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 77665321 22222222 33444455555555555555555
Q ss_pred CCCCCcchHHHHHHHHHc-CCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcc-----
Q 046956 166 GVDEDVFVGTSLIDLYGK-RKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE-----RSNV----- 234 (574)
Q Consensus 166 g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~----- 234 (574)
+ +.+......|..+|.. .++ +++..+++...+.|...+..++..|.+.|+.++|.++++++.. ++..
T Consensus 212 ~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 212 N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 4 2223334444444444 244 5555554443334555556666666666666666666665532 0000
Q ss_pred -------------------------hHHHHHHHHHccCChHHHHHHHhcCCC----------------------------
Q 046956 235 -------------------------SWNALIGGLVKIGDLRSARQLFDEMPE---------------------------- 261 (574)
Q Consensus 235 -------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------------- 261 (574)
....++..+.+.++++.++++.. ...
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 01112344444555554444433 100
Q ss_pred -----CchhHHHHHHHHHHhcCChHHHHHHHhhCCC-C-----CHhHHHHHHHHHHhCCC---chHHHHH----------
Q 046956 262 -----RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD-R-----DVVAWSALISGYAQNGQ---PDEAVKI---------- 317 (574)
Q Consensus 262 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~---~~~A~~~---------- 317 (574)
.+....-.+.....+.|+.++|.++|+...+ + +.....-++..|.+.+. ..++..+
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 0112222222334456667777777665544 1 12233355566655544 2233222
Q ss_pred ------------HHHHHHC-CC-CC--CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 318 ------------FSDMCSK-NV-QP--DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 318 ------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
++..... +. ++ +...+..+..++.. ++.++|...+.......+ +.. ....++..+...|+
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--d~~-~~L~lA~al~~~Gr 524 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP--DAW-QHRAVAYQAYQVED 524 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC--chH-HHHHHHHHHHHCCC
Confidence 1111111 11 22 45566666666655 777788887777766553 222 33345555678999
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHh
Q 046956 382 MDRAAELFETMPN--RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAM 458 (574)
Q Consensus 382 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 458 (574)
+++|...|+++.. ++...+..+...+...|+.++|...+++..+.+ |+. ..+..+.......|++++|...+++.
T Consensus 525 ~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 525 YATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999987763 455567777888899999999999999998853 444 34444444556679999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 459 QNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 459 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
.+ ..|+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|++++|+..++++++.+|+++.+
T Consensus 603 L~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 603 LN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred HH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 85 3567888999999999999999999999988 56675 5566677788999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 537 YVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+..++.++...|++++|...+++..+...
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999987553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-22 Score=205.90 Aligned_cols=468 Identities=13% Similarity=0.059 Sum_probs=339.8
Q ss_pred HhcCCChHHHHHHhhccCCCC--hh-hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhc-cCCcHHH
Q 046956 80 HSLATPLSYSTAVFNRIVNPN--TF-LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH-VLSVREG 155 (574)
Q Consensus 80 ~~~~~~~~~A~~~~~~~~~~~--~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 155 (574)
|.+.+....+++ .+...|+ .. ..-.+...|.+.|++++|++++.++.+.+.. +..-...+-.++.. .++ +.+
T Consensus 160 y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 160 LAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHH
Confidence 444444444444 2222232 33 3333478899999999999999999998643 44445666667776 466 777
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC-----CChhh--------------------------
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-----RNVVS-------------------------- 204 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~-------------------------- 204 (574)
..+++. .++.+...+..+...|.+.|+.++|..+++++.. |+..+
T Consensus 236 ~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 236 LALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 777543 3446788899999999999999999999998863 21111
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHhhcCC-------------------------------C-CcchHHHHHHHHHccCC
Q 046956 205 ----WTAMIVGYASVGDLVEAKTVFDLMPE-------------------------------R-SNVSWNALIGGLVKIGD 248 (574)
Q Consensus 205 ----~~~li~~~~~~g~~~~a~~~~~~~~~-------------------------------~-~~~~~~~l~~~~~~~~~ 248 (574)
.-.++..+.+.++++.+.++...-.. | +......+.-...+.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~ 391 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQ 391 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccc
Confidence 11225566677777766665332110 0 22223333344567889
Q ss_pred hHHHHHHHhcCCC--C----chhHHHHHHHHHHhcCC---hHHHHHH-------------------------HhhCCC--
Q 046956 249 LRSARQLFDEMPE--R----NVVSYTTMIDGYAKVGD---MTSARSL-------------------------FEAAPD-- 292 (574)
Q Consensus 249 ~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~---~~~A~~~-------------------------~~~~~~-- 292 (574)
.++|.++++...+ . +.....-++..|.+.+. ..++..+ +.....
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 9999999994422 2 22344467777777766 2333222 111111
Q ss_pred -C--CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHH
Q 046956 293 -R--DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369 (574)
Q Consensus 293 -~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 369 (574)
+ +...|..+..++.. +++++|+..+.+.... .|+......+..++...|++++|...++.+...... .. .+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~--~~-a~ 545 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS--NE-DL 545 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--cH-HH
Confidence 2 56678888888877 8999999988888765 466655445555667899999999999987654322 23 45
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 370 AALVDMNAKCGNMDRAAELFETMPNRDVV---SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 446 (574)
..++..+.+.|+.++|...++...+.++. .+..+.......|++++|...+++..+ ..|+...+..+..++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCC
Confidence 67788899999999999999988753332 233333344456999999999999998 5678778999999999999
Q ss_pred cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046956 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVAN 524 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 524 (574)
++++|...+++... ..+.+...+..+..++...|++++|++.++++ ...| +...+..+..++...|++++|+..++
T Consensus 624 ~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999997 44556788899999999999999999999988 5566 46678888899999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 525 RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+++++.|++..+....+++..+..+++.|.+-+++...-++
T Consensus 702 ~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 702 LVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999998887765443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=189.49 Aligned_cols=416 Identities=15% Similarity=0.129 Sum_probs=338.1
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcC
Q 046956 140 PLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVG 216 (574)
Q Consensus 140 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 216 (574)
..|..-..+.|++++|++--...-..+ +.+....-.+-..+.+..+.+....--....+ ....+|+.+...+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 344455567899999988666554433 22223333344456666666654433322222 24568999999999999
Q ss_pred ChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCCCCch--h-HHHHHHHHHHhcCChHHHHHHHhhC
Q 046956 217 DLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMPERNV--V-SYTTMIDGYAKVGDMTSARSLFEAA 290 (574)
Q Consensus 217 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~ 290 (574)
++.+|+..|+.+.+. ....|..+..++...|+.+.|.+.|....+-|+ . ..+.+.......|++++|...+.+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 999999999999764 456899999999999999999999984434333 3 3344667777889999999998876
Q ss_pred CC--CC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChh
Q 046956 291 PD--RD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD-EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA 366 (574)
Q Consensus 291 ~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 366 (574)
.. |. .++|..|...+..+|+...|+..|++..+. .|+ ...|..+...|...+.++.|...+.+..... |...
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A 286 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHA 286 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--Ccch
Confidence 54 33 468999999999999999999999999865 554 4678888888999999999999888877654 4444
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 046956 367 HVIAALVDMNAKCGNMDRAAELFETMPN--RD-VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTAC 442 (574)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~ 442 (574)
.++..+...|-..|.++-|++.|++..+ |+ ...|+.|..++...|+..+|...|.+.+. +.|+. ...+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHH
Confidence 4788899999999999999999999874 44 46899999999999999999999999998 56665 4889999999
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 519 (574)
...|.+++|..+|....+ +.|. ...++.|...|..+|++++|+..++++ .++|+ ...++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999999999985 3444 578899999999999999999999988 78887 56888999999999999999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
++.+.+++..+|.-..++..|+.+|...|+..+|...++...+-.+
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999876544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-21 Score=198.77 Aligned_cols=250 Identities=14% Similarity=0.106 Sum_probs=189.4
Q ss_pred CCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHH
Q 046956 308 NGQPDEAVKIFSDMCSKN-VQP-DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385 (574)
Q Consensus 308 ~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 385 (574)
.+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++.+.+..+... ..+..++..+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~--~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT--QSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHCCCHHHH
Confidence 467788888888887654 223 344566666677778888888888888877654332 2577788888888888888
Q ss_pred HHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 386 AELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 386 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
...|+++.+ .+...|..+...+...|++++|+..|++.++. .|+ ...+..+...+.+.|++++|+..++++.+
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~- 461 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK- 461 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 888887653 35678888888888899999999999988884 454 45777788888889999999999998886
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA-S-------AWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 462 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
..+.+...++.+..++...|++++|++.|++. ...|+. . .++.....+...|++++|+..++++++++|+
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44556788888888999999999999988886 333321 1 1111222334468999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 533 NAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+..++..+++++.+.|++++|.+.|++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999887654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=186.11 Aligned_cols=296 Identities=16% Similarity=0.127 Sum_probs=221.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc
Q 046956 270 MIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD---EFILVSLMSACSQV 343 (574)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~ 343 (574)
....+...|++++|...|+++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34445666777777777776654 2345677777777777777777777777766432221 24556667777777
Q ss_pred CCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC------hhHHHHHHHHHHHcCChHH
Q 046956 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD------VVSYCSMIKGLSIHGHGRQ 415 (574)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~ 415 (574)
|+++.|..++..+.+.... ....+..++..+.+.|++++|.+.++.+.+ |+ ...+..+...+...|++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDF--AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 7777777777777664322 222677778888888888888888877653 11 1245667778889999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 416 AVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
|...++++.+. .|+ ...+..+...+.+.|++++|.++++++... .......++..++.+|...|++++|.+.++++
T Consensus 199 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 199 ARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999884 344 457888888999999999999999999864 22222466788999999999999999999988
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCC
Q 046956 495 -PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT---ADRWLDVCLVRSKMKERGLRKIPG 570 (574)
Q Consensus 495 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 570 (574)
...|+...+..+...+.+.|++++|...++++++..|++......+ ..+.. .|+.+++..++++|.+++++++|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~-~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL-DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH-HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5567777777778999999999999999999999999977544344 34442 569999999999999999999986
Q ss_pred c
Q 046956 571 C 571 (574)
Q Consensus 571 ~ 571 (574)
+
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 4
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-18 Score=168.78 Aligned_cols=475 Identities=13% Similarity=0.118 Sum_probs=329.4
Q ss_pred ChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCC--CCcchHHHHHHHHhccCCcHHHHHHH
Q 046956 85 PLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAV--PDKYTFPLVIKACSHVLSVREGTAIH 159 (574)
Q Consensus 85 ~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~ 159 (574)
....+..++...- +.|++..+.|.+.|.-.|++..++.+...+...... .-...|-.+.+++-..|++++|...|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3455555555442 567788888888888888888888888887765321 11234667778888888888888888
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcC----ChHHHHHHHhhcCCC-
Q 046956 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--R-NVVSWTAMIVGYASVG----DLVEAKTVFDLMPER- 231 (574)
Q Consensus 160 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~- 231 (574)
.+..+.....-+..+--|..+|.+.|+++.+...|+.+.. | +..+...|...|...+ ..+.|..++.+..++
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 7776654222233445677888888888888888888764 3 3445555666666554 456666666666554
Q ss_pred --CcchHHHHHHHHHccCC------hHHHHHHHh-cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------CCH
Q 046956 232 --SNVSWNALIGGLVKIGD------LRSARQLFD-EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD-------RDV 295 (574)
Q Consensus 232 --~~~~~~~l~~~~~~~~~------~~~a~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~ 295 (574)
|...|..+...+....- +..|..++. ......+...|.+...+...|++++|...|..... +|.
T Consensus 411 ~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 44455555555543332 334444444 23346777888888888888888888888876542 122
Q ss_pred ------hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhH
Q 046956 296 ------VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF-ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHV 368 (574)
Q Consensus 296 ------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 368 (574)
.+-..+...+-..++++.|.+.|....+. .|.-. .|..++......+...+|...+..+...+..... +
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~--a 566 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN--A 566 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH--H
Confidence 22334566666778888888888888875 44433 3333332233446677788888777765443333 6
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCC
Q 046956 369 IAALVDMNAKCGNMDRAAELFETMP-----NRDVVSYCSMIKGLSI------------HGHGRQAVSLFDRMLSEGLTPD 431 (574)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~ 431 (574)
+..++..|.+...+..|.+-|+.+. .+|+.+.-.|...|.+ .+..++|+++|.+.++.. +-|
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN 645 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKN 645 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cch
Confidence 7777888888888888888665554 2455555555555442 245678888998888743 445
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHH
Q 046956 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PVEPHASAWGALL 507 (574)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~ 507 (574)
...-+.+.-.++..|++.+|..+|.+..+. ......+|-.++.+|..+|++..|+++|+.. ..+.+....+.|.
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 567778888889999999999999999884 3345567888999999999999999999876 2345677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-------------------CCchHHHHHHHHHHhCCCc
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA-------------------DRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~ 566 (574)
.++...|++.+|.+.+..+....|.++...+.++.+..+. +..++|.++|.+|...+-+
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999998888777665443 3567888888888877655
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-18 Score=179.51 Aligned_cols=397 Identities=10% Similarity=0.008 Sum_probs=193.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcC
Q 046956 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKR 184 (574)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 184 (574)
.-.+.+....|+.++|++++.+..... ..+...+..+..++...|++++|..+++..++.. +.+...+..++.++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334455566677777777776665421 2233346666666666777777777777766653 23344555666666667
Q ss_pred CChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCC
Q 046956 185 KEISCARKVFDEMPE--R-NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPE 261 (574)
Q Consensus 185 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (574)
|++++|...++++.+ | +.. +..+...+...|+.++|+..++++.+.+ +
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----------------------------P 147 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA----------------------------P 147 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------C
Confidence 777777766666643 2 333 5566666666666666666666655421 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CH------hHHHHHHHHHH-----hCCCc---hHHHHHHHHHHHC-C
Q 046956 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DV------VAWSALISGYA-----QNGQP---DEAVKIFSDMCSK-N 325 (574)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~m~~~-~ 325 (574)
.+...+..+...+...|..++|++.++..... +. .....++.... ..+++ ++|+..++.+.+. .
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 22333334444444455555555555544431 00 01111111111 11222 5566666666643 1
Q ss_pred CCCCHH-HHH----HHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC--
Q 046956 326 VQPDEF-ILV----SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD-- 396 (574)
Q Consensus 326 ~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-- 396 (574)
..|+.. .+. ..+.++...|+.++|+..++.+.+.+...+.. ....+...|...|++++|+..|+++.+ |.
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 122211 111 01223334455566666666655544221111 222245555555555555555555432 11
Q ss_pred ---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 397 ---VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-----------LTPDE---VAFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 397 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
......+..++...|++++|..+++++.+.. -.|+. ..+..+...+...|+.++|+++++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1223334445555566666666665555421 01121 123334444555555555555555555
Q ss_pred hhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
. ..+.+...+..++..+...|++++|++.++++ ...|+ ...+......+...|++++|+..++++++..|+++.
T Consensus 387 ~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 387 Y--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred H--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 4 33334455555555555555555555555554 33343 223333334445555555555555555555555553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-18 Score=177.83 Aligned_cols=418 Identities=11% Similarity=0.014 Sum_probs=293.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 183 (574)
+......+.+.|++++|+..|++.++. .|+...|..+..++...|++++|+..++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455677888999999999999998765 5677788888888889999999999999988865 3456678888999999
Q ss_pred CCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCC
Q 046956 184 RKEISCARKVFDEMPER---NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMP 260 (574)
Q Consensus 184 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (574)
.|++++|..-|..+... +......++..+........+...++.-. .+...+..+.. +......+....-+..-.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 99999998877654321 11111111211111111223333333221 12222222222 221111111111111110
Q ss_pred CCch---hHHHHHHHHH---HhcCChHHHHHHHhhCCC------CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 046956 261 ERNV---VSYTTMIDGY---AKVGDMTSARSLFEAAPD------RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328 (574)
Q Consensus 261 ~~~~---~~~~~l~~~~---~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 328 (574)
+.+. ..+..+...+ ...+++++|.+.|+...+ .+...|+.+...+...|++++|+..|++..+. .|
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 1111 1111111111 234789999999987764 24567888889999999999999999999876 34
Q ss_pred C-HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHH
Q 046956 329 D-EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMI 404 (574)
Q Consensus 329 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 404 (574)
+ ...|..+...+...|++++|...++.+.+..+.. ..++..++..+...|++++|...|++..+ | +...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED--PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 4 5678888888999999999999999998875433 33788999999999999999999998873 3 566788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HH-------HHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PE-------HYACMV 475 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-------~~~~l~ 475 (574)
..+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|...|++.... .|+ .. .++...
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHH
Confidence 9999999999999999999874 454 568889999999999999999999998863 222 11 122222
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 476 DLLGRTGHLKSAYELLNSM-PVEPHA-SAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
..+...|++++|.+++++. ...|+. ..+..+...+...|++++|+..|++++++.+....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 3344579999999999986 556654 46777889999999999999999999999776444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-19 Score=180.95 Aligned_cols=323 Identities=11% Similarity=0.004 Sum_probs=225.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcC---CCCchhHHHHHHHHHHhcC
Q 046956 205 WTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEM---PERNVVSYTTMIDGYAKVG 278 (574)
Q Consensus 205 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g 278 (574)
...++..+.+.|++++|+.+++..... +...+..++.+....|+++.|...++.+ .+.+...+..+...+...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 344555666666666666666665431 3334444555555666666666666632 2345566777778888888
Q ss_pred ChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHH
Q 046956 279 DMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSY 355 (574)
Q Consensus 279 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 355 (574)
++++|...+++... .+...+..++..+...|++++|...++.+......+ ...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 88888888877654 346677778888888888888888888776553222 2223222 346677888888888887
Q ss_pred HHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCC
Q 046956 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQ----AVSLFDRMLSEGL 428 (574)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~ 428 (574)
+.+........ ....++..+.+.|++++|...++...+ .+...+..+...+...|++++ |...|++..+.
T Consensus 203 ~l~~~~~~~~~-~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 203 LLPFFALERQE-SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHhcCCCcchh-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 76654333332 445556777888888888888887663 355677778888888888875 78888888873
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHH-H
Q 046956 429 TPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWG-A 505 (574)
Q Consensus 429 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ 505 (574)
.|+ ...+..+...+...|++++|...++++.+ ..+.+...+..+..++.+.|++++|.+.++++ ...|+...+. .
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 455 44788888888888999999999888886 33444667777888888899999999888877 4556654433 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
+..++...|+.++|+..|+++++..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 45677888999999999999988888754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-18 Score=169.31 Aligned_cols=509 Identities=10% Similarity=0.052 Sum_probs=372.8
Q ss_pred CCchHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHH---HHH---hCCCchHH
Q 046956 49 LQTHLHQVHSHIIKK--GLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLK---GYS---QNSRFIEV 120 (574)
Q Consensus 49 ~~~~~~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~---~~~---~~g~~~~a 120 (574)
+...+..++..+... ...||+.+.. +.++.++|+.+.|+..|.+..+-|+..-++++. .-. ....+..+
T Consensus 179 dY~~al~yyk~al~inp~~~aD~rIgi---g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVRIGI---GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCccchh---hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 444555566654443 3467776543 366789999999999998886544433333322 112 22345566
Q ss_pred HHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCC--CCcchHHHHHHHHHcCCChHHHHHHHccCC
Q 046956 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD--EDVFVGTSLIDLYGKRKEISCARKVFDEMP 198 (574)
Q Consensus 121 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (574)
+.++...-... .-|+...+.|.+.+.-.|+++.+..+...+...... .-...|--+.++|...|++++|...|.+..
T Consensus 256 ~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 77776665543 236778888889999999999999999988876421 123356778999999999999999998876
Q ss_pred C--CCh--hhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccC----ChHHHHHHHhcCC---CCch
Q 046956 199 E--RNV--VSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIG----DLRSARQLFDEMP---ERNV 264 (574)
Q Consensus 199 ~--~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~---~~~~ 264 (574)
. +|. ..+--+...+.+.|+++.+...|+.+.+. +..+...+...|+..+ ..+.|..++.+.. ..|.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 5 333 34556788999999999999999998653 4567777777777765 5667777776433 3566
Q ss_pred hHHHHHHHHHHhcCCh------HHHHHHHhhC-CCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHC---CCCCCH----
Q 046956 265 VSYTTMIDGYAKVGDM------TSARSLFEAA-PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK---NVQPDE---- 330 (574)
Q Consensus 265 ~~~~~l~~~~~~~g~~------~~A~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~---- 330 (574)
..|-.+..++....-+ ..|..++..- ....+...|.+...+...|++.+|...|...... ...+|.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 6777777766554433 3333333322 2356778999999999999999999999988765 122333
Q ss_pred --HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHH
Q 046956 331 --FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIK 405 (574)
Q Consensus 331 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 405 (574)
.+-..+.......++.+.|...|..+.+..+..-. .|..++.+....+...+|...++.+. +.++..|..+..
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId--~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYID--AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHH--HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 23334556667788999999999999987765544 46666666666788999999999887 367778888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcc------------CcHHHHHHHHHHhHhhcCCCCcHHHHH
Q 046956 406 GLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHV------------GLVEDGWRFFEAMQNVYAIVPSPEHYA 472 (574)
Q Consensus 406 ~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~------------g~~~~a~~~~~~~~~~~~~~p~~~~~~ 472 (574)
.+.....+..|.+-|....+.- ..+|..+...|.+.|.+. +..++|+++|.++.+ ..+.|...-|
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAAN 650 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAAN 650 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhcc
Confidence 9998888888888777665532 236777777777755432 346788999998887 5666777788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCchhHHHHHHHHHhcC
Q 046956 473 CMVDLLGRTGHLKSAYELLNSMP--VEPHASAWGALLGACKLYSDIELGELVANRLFEL--EPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 548 (574)
-++-+++..|++.+|..+|.+.. ......+|..+...|...|++..|++.|+..++. ..+++.+...|+.++.+.|
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 88899999999999999999882 1224567889999999999999999999999986 3567889999999999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 046956 549 RWLDVCLVRSKMKERGL 565 (574)
Q Consensus 549 ~~~~a~~~~~~~~~~~~ 565 (574)
++.+|.+.+.......+
T Consensus 731 ~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHLAP 747 (1018)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 99999999988776554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-18 Score=177.40 Aligned_cols=346 Identities=9% Similarity=-0.032 Sum_probs=277.7
Q ss_pred hcCChHHHHHHHhhcCCC------CcchHHHHHHHHHccCChHHHHHHHhcCC---CCchhHHHHHHHHHHhcCChHHHH
Q 046956 214 SVGDLVEAKTVFDLMPER------SNVSWNALIGGLVKIGDLRSARQLFDEMP---ERNVVSYTTMIDGYAKVGDMTSAR 284 (574)
Q Consensus 214 ~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 284 (574)
+..+|+.-.-.|....++ +......++..+.+.|+.++|..+++... +.+......++......|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 444454444444443321 33455667788899999999999998442 455667777788888999999999
Q ss_pred HHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCC
Q 046956 285 SLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM 361 (574)
Q Consensus 285 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 361 (574)
..|+++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|...+..+....+
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 99998864 356788899999999999999999999998762 33567788888899999999999999998887766
Q ss_pred CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046956 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI 437 (574)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 437 (574)
.+.. .+..+. .+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...+..
T Consensus 176 ~~~~--a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 251 (656)
T PRK15174 176 PRGD--MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRS 251 (656)
T ss_pred CCHH--HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 5544 343333 478899999999999987642 23344556778889999999999999999853 334557888
Q ss_pred HHHHHhccCcHHH----HHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 046956 438 VLTACSHVGLVED----GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACK 511 (574)
Q Consensus 438 l~~~~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 511 (574)
+...+...|++++ |...++++.+ ..+.+...+..++..+...|++++|...++++ ...|+ ...+..+..++.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999986 8999999986 34456788999999999999999999999988 45565 456667778999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
..|++++|+..++++++.+|+++..+..++.++...|++++|...+++..+...+
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999999998887878899999999999999999999877654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-18 Score=178.54 Aligned_cols=394 Identities=9% Similarity=-0.021 Sum_probs=281.2
Q ss_pred CcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHH
Q 046956 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVG 211 (574)
Q Consensus 135 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 211 (574)
+.....-.+......|+.++|++++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..++..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44444455566667777777777777776532 33444567777777777777777777777543 234556666667
Q ss_pred HHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 046956 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291 (574)
Q Consensus 212 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 291 (574)
+...|++++|+..+++..+.+ +.+.. +..+..++...|+.++|+..++++.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~----------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA----------------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC----------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777766654332 33445 7778888889999999999998876
Q ss_pred C---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhc-----cCCc---chHHHHHH
Q 046956 292 D---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE------FILVSLMSACSQ-----VGNL---DLSNWVDS 354 (574)
Q Consensus 292 ~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~-----~~~~---~~a~~~~~ 354 (574)
+ .+...+..+..++...+..++|+..++.... .|+. ......+..... .+++ +.|...++
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 5 3566777788888899999999999987654 2321 011122222211 1223 56777788
Q ss_pred HHHHh-CCCCChhhHH----HHHHHHhHhcCCHHHHHHHHhhCCCCC---h-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 355 YLSRS-HMDLSRAHVI----AALVDMNAKCGNMDRAAELFETMPNRD---V-VSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 355 ~~~~~-~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
.+.+. ...|+....+ ...+..+...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++.+
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 87754 2222211011 111234457799999999999988532 1 1222357789999999999999999887
Q ss_pred CCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC------------Cc---HHHHHHHHHHHhhcCCHH
Q 046956 426 EGLTPD-----EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV------------PS---PEHYACMVDLLGRTGHLK 485 (574)
Q Consensus 426 ~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------p~---~~~~~~l~~~~~~~g~~~ 485 (574)
.. |. ......+..++...|++++|.++++.+... .+ |+ ...+..++..+...|+++
T Consensus 301 ~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 301 HP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred cC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 43 32 235666777889999999999999999863 22 22 234567788899999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 486 SAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 486 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+|++.++++ ...| +...+..+...+...|++++|++.++++++++|+++..+..++..+...|++++|..+++++++.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999998 4445 46677788899999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 046956 564 GL 565 (574)
Q Consensus 564 ~~ 565 (574)
.+
T Consensus 457 ~P 458 (765)
T PRK10049 457 EP 458 (765)
T ss_pred CC
Confidence 54
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=170.82 Aligned_cols=228 Identities=17% Similarity=0.153 Sum_probs=153.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCh---hhHHHHHHH
Q 046956 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR---AHVIAALVD 374 (574)
Q Consensus 298 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~ 374 (574)
+..++..|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|...++.+.+.+..... ...+..++.
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3344444444444444444444444321 223334444444444444444444444444433322211 113455677
Q ss_pred HhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046956 375 MNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 451 (574)
.+.+.|++++|...|+++.+ | +...+..+...+...|++++|..+++++.+.+......++..++.+|...|++++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 77788888888888887763 2 35577788888999999999999999998753222235678888999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKL---YSDIELGELVANRLF 527 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 527 (574)
...++++.+. .|+...+..++..+.+.|++++|.++++++ ...|+...+..++..+.. .|+.+++...+++++
T Consensus 269 ~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 269 LEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 9999998863 466666788899999999999999999876 667888888888766553 558888988888888
Q ss_pred hh
Q 046956 528 EL 529 (574)
Q Consensus 528 ~~ 529 (574)
+.
T Consensus 346 ~~ 347 (389)
T PRK11788 346 GE 347 (389)
T ss_pred HH
Confidence 63
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-16 Score=163.26 Aligned_cols=433 Identities=11% Similarity=0.033 Sum_probs=294.0
Q ss_pred HHhcCCChHHHHHHhhccCC--CCh--hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cchHHHH--HHHHhccCC
Q 046956 79 CHSLATPLSYSTAVFNRIVN--PNT--FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD-KYTFPLV--IKACSHVLS 151 (574)
Q Consensus 79 ~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l--l~~~~~~~~ 151 (574)
...+.|+++.|+..|++... |+. ..+ .++..+...|+.++|+..+++.. .|+ ...+..+ ...+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 46789999999999999863 432 233 88888889999999999999987 232 2233333 457778899
Q ss_pred cHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCC--ChhhHHHHHHHHHhcCChHHHHHHHhhcC
Q 046956 152 VREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER--NVVSWTAMIVGYASVGDLVEAKTVFDLMP 229 (574)
Q Consensus 152 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 229 (574)
+++|.++++++.+.. +.+...+..++..+...++.++|+..++++... +...+..++..+...++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999886 334667778888999999999999999999864 43344333333333566666999999887
Q ss_pred CC---CcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHH
Q 046956 230 ER---SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYA 306 (574)
Q Consensus 230 ~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 306 (574)
+. +...+..+..++.+.|-...|.++...- |+..+-...... +.+.|.+..+-...++. .
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~--p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----------~ 259 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN--PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR----------S 259 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC--ccccCHHHHHHH-----HHHHHHHHHhhcccccc----------c
Confidence 53 3445566677777777777777777643 111110000000 01111111111100000 0
Q ss_pred hCC---CchHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhH
Q 046956 307 QNG---QPDEAVKIFSDMCSK-NVQPDE-F----ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377 (574)
Q Consensus 307 ~~~---~~~~A~~~~~~m~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (574)
... -.+.|+.-++.+... +..|.. . ...-.+.++...|+..+++..++.+...+.+.+.. +...++++|.
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y-~~~a~adayl 338 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY-ARRWAASAYI 338 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHH
Confidence 011 134455555555442 122321 1 12234456677778888888888888777665555 7778888888
Q ss_pred hcCCHHHHHHHHhhCCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH--H-H
Q 046956 378 KCGNMDRAAELFETMPNR---------DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-----------TPDE--V-A 434 (574)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~--~-~ 434 (574)
..+++++|+.+|..+... +......|.-+|...+++++|..+++++.+... .||+ . .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 888888888888876531 222346677888888999999999998887311 1322 2 4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA-SAWGALLGACKL 512 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~ 512 (574)
+..++..+...|+..+|++.++++.. .-|-|......+.+.+...|.+.+|.+.++.+ ...|+. .+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 45566778889999999999999986 66778889999999999999999999999877 456654 445566688888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 513 YSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
.+++++|..+.+.+++..|+++..-
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999988544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-16 Score=158.51 Aligned_cols=429 Identities=12% Similarity=0.022 Sum_probs=276.6
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCCc--chHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC-CcchHHHH--HHHHHc
Q 046956 109 KGYSQNSRFIEVFTIFVRLIREEAVPDK--YTFPLVIKACSHVLSVREGTAIHAAVIRWGVDE-DVFVGTSL--IDLYGK 183 (574)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l--i~~~~~ 183 (574)
-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.. .| +...+..+ ...+..
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence 34577888888888888887763 333 233 66777777788888888888876 22 22233333 557777
Q ss_pred CCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHc--cCChHHHHHHHhc
Q 046956 184 RKEISCARKVFDEMPE--R-NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK--IGDLRSARQLFDE 258 (574)
Q Consensus 184 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 258 (574)
.|++++|.++|+++.+ | +...+..++..+...++.++|++.++++.+.++.....++.++.. .++..+|.+.+++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 7888888888888875 2 445566677777888888888888888776543322222222222 3333334444442
Q ss_pred CC---CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 046956 259 MP---ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334 (574)
Q Consensus 259 ~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 334 (574)
+. +.+...+..+.....+.|-...|.++..+-++- +...+..+ +.+.|.+..+. +..++.
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~----a~~~~~---- 258 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRM----AVLPTR---- 258 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhh----cccccc----
Confidence 21 223444444555555555555555444443310 00000000 01111111111 100000
Q ss_pred HHHHHHhccCCc---chHHHHHHHHHHh-CCCCChh----hHHHHHHHHhHhcCCHHHHHHHHhhCCCC----ChhHHHH
Q 046956 335 SLMSACSQVGNL---DLSNWVDSYLSRS-HMDLSRA----HVIAALVDMNAKCGNMDRAAELFETMPNR----DVVSYCS 402 (574)
Q Consensus 335 ~ll~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 402 (574)
...+++ +.+..-++.+... +..|... ....-.+-++...|++.++++.|+.+..+ ...+-..
T Consensus 259 ------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 259 ------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred ------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 011122 3344444444432 2222211 12234456678889999999999999842 3346677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcC----------CCCc
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGL-----TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA----------IVPS 467 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~ 467 (574)
+..+|...+++++|..+|+++..... .++......|.-++...+++++|..+++.+.+... -.|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 89999999999999999999876431 22333457888899999999999999999987211 0133
Q ss_pred H---HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 468 P---EHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 468 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+ ..+..++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|++.++.+..++|++..+...++.
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 2 34455678889999999999999998 4445 67778888899999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCc
Q 046956 543 IYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
.+...|+|.+|..+.+.+.+..++
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCC
Confidence 999999999999999888765543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-16 Score=142.17 Aligned_cols=437 Identities=12% Similarity=0.112 Sum_probs=315.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHH-HHHHHhccCCcHHHHHHHHHHHHhCCCCCcc----hHHHHHHHH
Q 046956 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL-VIKACSHVLSVREGTAIHAAVIRWGVDEDVF----VGTSLIDLY 181 (574)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~ 181 (574)
+.+-|..+....+|+..|+-+.+....||...... +-+.+.+.+++..|.++++..++.-+..+.. +.+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44566677788899999999988888888765543 3456778889999999999888764333322 344445567
Q ss_pred HcCCChHHHHHHHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHhhcCC----------------CCcchHHHH----
Q 046956 182 GKRKEISCARKVFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE----------------RSNVSWNAL---- 239 (574)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~l---- 239 (574)
.+.|.++.|..-|+...+ |+..+--.|+-++..-|+.++..+.|.+|.. |+....+..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999998875 7777666667777778999999999998853 111222221
Q ss_pred -HHHHHccC--ChHHHH----HHHhcCCCCchhH---H----------H--------HHHHHHHhcCChHHHHHHHhhCC
Q 046956 240 -IGGLVKIG--DLRSAR----QLFDEMPERNVVS---Y----------T--------TMIDGYAKVGDMTSARSLFEAAP 291 (574)
Q Consensus 240 -~~~~~~~~--~~~~a~----~~~~~~~~~~~~~---~----------~--------~l~~~~~~~g~~~~A~~~~~~~~ 291 (574)
+.-..+.+ +-+++. ++..-+..|+... | . .-.--|.+.|+++.|++++....
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 12222221 122222 1111111222110 0 0 11234788999999999988877
Q ss_pred CCCHhHHH----HH-HHHHHh-CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCh
Q 046956 292 DRDVVAWS----AL-ISGYAQ-NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR 365 (574)
Q Consensus 292 ~~~~~~~~----~l-i~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 365 (574)
+.|..+-. .| +--|.+ ..++..|.+.-+...... .-+......-.......|++++|...+.+..........
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 65543322 22 122222 446777777776665432 223333333333345678999999999999877665555
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 366 AHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442 (574)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 442 (574)
. ...+.-.+...|++++|+++|-++. ..++.+...+...|-...+..+|++++.+.... ++.|+.....|...|
T Consensus 526 a--lfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 A--LFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred H--HHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 3 4456777889999999999998776 467777788888899999999999999887763 344566889999999
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALL-GACKLYSDIELGE 520 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~ 520 (574)
-+.|+-.+|.+++-.--+ -++-+.++..-|..-|....-+++|+.+|++. -++|+..-|..++ +.+.+.|++++|.
T Consensus 603 dqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999998877665 67888999999999999999999999999998 6789999999888 5557899999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 521 LVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
.+|+...+..|.+...+..|..++...|-
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999888774
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-14 Score=137.53 Aligned_cols=498 Identities=12% Similarity=0.060 Sum_probs=383.3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 046956 54 HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130 (574)
Q Consensus 54 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 130 (574)
.++.....+. ++.++..|-..+ .....+.|+-++.+.+ +.+...|. ++++-.-++.|..++...++.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV-----elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV-----ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH-----hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 3444444433 245555665444 3445556777777765 33344444 445566677888888887766
Q ss_pred CCCCCcchHHHHHHHHhccCCcHHHHHHHHHH----HHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC------C
Q 046956 131 EAVPDKYTFPLVIKACSHVLSVREGTAIHAAV----IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE------R 200 (574)
Q Consensus 131 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~ 200 (574)
++.+...|.+....=-..|+.+...++..+- ...|+..+...|..=...+-..|..-....+...+.. .
T Consensus 436 -iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 436 -IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred -CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 5557777776666666777888777776653 3457777777777777777777877777777766643 2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCC---CCchhHHHHHHHHH
Q 046956 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMP---ERNVVSYTTMIDGY 274 (574)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 274 (574)
-..+|..-...|.+.+.++-|..+|....+- +...|......--..|..+.-..++++.. +.....|......+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 3457888888888888888888888877653 45567766666677788888888877332 34556677777888
Q ss_pred HhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHH
Q 046956 275 AKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351 (574)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 351 (574)
-..|++..|..++....+ .+...|.+-+.....+.++++|..+|.+.... .|+...|..-+..-...++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 889999999999887654 46778999999999999999999999998764 6777888777777777899999999
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046956 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428 (574)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 428 (574)
+++..++.-+.... +|..+++.+.+.++++.|.+.|..-.+ | .+..|-.+...--+.|..-.|..++++..-.+
T Consensus 673 llEe~lk~fp~f~K--l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 673 LLEEALKSFPDFHK--LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHhCCchHH--HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 99999887655544 789999999999999999999987764 4 44678888888888899999999999988764
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046956 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLG 508 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 508 (574)
+-+...|...+..-.+.|+.+.|..+..++.+ .++.+-..|..-|....+.++-..+.+.+++... |+.....+..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHH
Confidence 44667899999999999999999999999998 6777788898888888888888888888888754 4455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCccc
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~ 573 (574)
.+....+++.|..-|.++++.+|++..+|..+-..+.+.|.-++-.+++.+..... |.-|..|
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W 888 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHH
Confidence 78888899999999999999999999999999999999999999999998886544 4555554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-13 Score=121.91 Aligned_cols=479 Identities=15% Similarity=0.150 Sum_probs=351.9
Q ss_pred HHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHH
Q 046956 78 LCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154 (574)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 154 (574)
+.--..++...|.++|++.. ..+...|-..+..=.++.....|..++++....-...|.. |-..+-.=-..|++..
T Consensus 81 qwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHH
Confidence 44456788999999999885 5677789999999999999999999999988763333333 3233333346799999
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC-
Q 046956 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP--ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER- 231 (574)
Q Consensus 155 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 231 (574)
|.++|+...+. +|+...|++.|+.=.+.+.++.|..++++.. .|++.+|--...--.+.|+...|..+|+...+.
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999998875 7999999999999999999999999999876 599999999999889999999999999988752
Q ss_pred -----CcchHHHHHHHHHccCChHHHHHHHh----cCCC-CchhHHHHHHHHHHhcCChHHHHHHH--------hhCCC-
Q 046956 232 -----SNVSWNALIGGLVKIGDLRSARQLFD----EMPE-RNVVSYTTMIDGYAKVGDMTSARSLF--------EAAPD- 292 (574)
Q Consensus 232 -----~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~- 292 (574)
+...+++...--.++..++.|..+|. .+.. .....|..+...--+-|+.....+.. +....
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 33456666666667788999999988 3422 12456666666655666655444432 22222
Q ss_pred --CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCCcchHHHHHHHHHHhC
Q 046956 293 --RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE-------FILVSLMSAC---SQVGNLDLSNWVDSYLSRSH 360 (574)
Q Consensus 293 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~ 360 (574)
-|-.+|-..+..--..|+.+...++|++.... ++|-. ..|.-+-.+| ....+++.+.++++..++.-
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 25678888888888899999999999999875 55532 2233332333 34678899999999888732
Q ss_pred CC--CChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046956 361 MD--LSRAHVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT 436 (574)
Q Consensus 361 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 436 (574)
+. .+-..++...+..-.++.++..|.+++.... -|...+|...|..-.+.+++|.+..+|++.++-+ +-+..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 21 1112233344455568899999999998877 3778899999999999999999999999999954 34567898
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACK---- 511 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~---- 511 (574)
.....-...|+.+.|..+|+-++....+......|.+.|+.-...|.++.|..+++++ ...+...+|-+....-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 8888888999999999999999986444444567778888888999999999999988 44455567766653322
Q ss_pred -hcC-----------CHHHHHHHHHHHHhh----CCCC--chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 512 -LYS-----------DIELGELVANRLFEL----EPQN--AGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 512 -~~~-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+.+ ....|..+|+++... .|.. ...+...-++-...|...+...+-++|.
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 333 567888999988764 2321 1233333444455666666666655554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-12 Score=122.18 Aligned_cols=428 Identities=10% Similarity=0.110 Sum_probs=294.0
Q ss_pred HHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC-
Q 046956 121 FTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE- 199 (574)
Q Consensus 121 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 199 (574)
.+++++.++. ++-+...|... ....+.+.|+.++....+.- +.+...|.+ |++..-++.|..++++..+
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~dLwlA----larLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMDLWLA----LARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 3445555544 22233334333 23345555777777766652 333333333 3444556677777766654
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHHhhcCC--------CCcchHHHHHHHHHccCChHHHHHHHh-----cCC-CCc
Q 046956 200 --RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE--------RSNVSWNALIGGLVKIGDLRSARQLFD-----EMP-ERN 263 (574)
Q Consensus 200 --~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~-~~~ 263 (574)
.+...|.+-...--.+|+.+...+++.+-.. -+...|..-...|-..|..-.+..+.. +.. +..
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 4566676666666667777777766665432 133344444555555555555555544 111 133
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340 (574)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 340 (574)
..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..+.-..+|++.... ++-....|......+
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHH
Confidence 45777778888888888888888876654 35566777776666778888888888888776 333445555556666
Q ss_pred hccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHH
Q 046956 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVS 418 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~ 418 (574)
-..|++..|..++..+.+.++.. .. ++..-+.......+++.|..+|.+.. .++...|.--+......++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pns-ee-iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNS-EE-IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCc-HH-HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 77788888888888888776653 23 77788888888888888888888776 4666777766666677788888888
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C
Q 046956 419 LFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP-V 496 (574)
Q Consensus 419 ~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 496 (574)
++++.++ .-|+.. .|..+.+.+.+.++++.|...|..-.+ ..+-....|-.|.+.-.+.|++-.|..++++.. .
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 8888877 466654 777777788888888888888877665 555566778888888888888888888888872 2
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------------------------CchhHHHHHHHHH
Q 046956 497 EP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ------------------------------NAGSYVLLSNIYA 545 (574)
Q Consensus 497 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~ 545 (574)
+| +...|...+..-.+.|+.+.|..++.++++..|+ |+..+...+.++.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 34 5677888888888888888888888877766555 4566777888888
Q ss_pred hcCCchHHHHHHHHHHhCCC
Q 046956 546 TADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~~~~ 565 (574)
...+++.|++.|.+..+.+.
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 88899999999999887764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-14 Score=131.56 Aligned_cols=215 Identities=15% Similarity=0.138 Sum_probs=178.7
Q ss_pred HhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHH
Q 046956 340 CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQA 416 (574)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 416 (574)
+.-.|+.-.+..-++.+++....+.. .|-.+..+|....+.++....|++..+ .|+.+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch--HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 34467778888888888887766655 477788889999999999999988773 4677888888888888999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 046956 417 VSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM- 494 (574)
Q Consensus 417 ~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (574)
..=|++.+. +.|+. ..|..+..+..+.+.++++...|++.++ .++--+++|+.....+..++++++|.+.|+..
T Consensus 414 ~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 414 IADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999998 56665 4888888888899999999999999998 77778899999999999999999999999887
Q ss_pred CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 495 PVEPH---------ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 495 ~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
..+|. +.+...++..-. .+++.+|+.++.++++++|..-.+|..|+.+-.+.|+.++|.++|++..
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333 222233332223 3899999999999999999999999999999999999999999998754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-13 Score=129.36 Aligned_cols=313 Identities=13% Similarity=0.093 Sum_probs=218.5
Q ss_pred HHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHH
Q 046956 79 CHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155 (574)
Q Consensus 79 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 155 (574)
.+++ |++++|.+++.+++ +.+...|.+|...|-+.|+.+++...+-..-... +-|...|..+.....+.|++++|
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 3444 89999999998886 3466789999999999999998887765544332 22557788888878888999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCCh----h----hHHHHHHHHHhcCChHHHHHHHhh
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV----V----SWTAMIVGYASVGDLVEAKTVFDL 227 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~a~~~~~~ 227 (574)
.-+|.+.++.. +++...+---+.+|-+.|+...|..-|.++.+.++ . .-...+..+...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999988876 44555555667788888999988888888765222 1 222345566667777888888877
Q ss_pred cCCC-----CcchHHHHHHHHHccCChHHHHHHHhcCCC-------------------------------CchhH-HHHH
Q 046956 228 MPER-----SNVSWNALIGGLVKIGDLRSARQLFDEMPE-------------------------------RNVVS-YTTM 270 (574)
Q Consensus 228 ~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------------------~~~~~-~~~l 270 (574)
.... +...++.++..+.+...++.+......... .+..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 6542 445677788888887777777666552211 12222 1111
Q ss_pred HHHHHhcCChHHHHHHHhhCC----CCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCc
Q 046956 271 IDGYAKVGDMTSARSLFEAAP----DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 346 (574)
.-...+.++..+++.-|-... ..+...|..+..+|...|++.+|+.+|..+......-+...|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 122233344444444332221 2345678888888888999999999988888765555677888888888888888
Q ss_pred chHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCC
Q 046956 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD 396 (574)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 396 (574)
+.|.+.++.++...+.... +...|...+.+.|+.++|.+++..+..||
T Consensus 466 e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLD--ARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHHHHHHHhcCCCchh--hhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 9999888888876554443 56778888888899998888888876554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-12 Score=118.38 Aligned_cols=410 Identities=11% Similarity=0.100 Sum_probs=255.2
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCC-------------------------hHHHHHH
Q 046956 40 ALTLIKKCKLQTHLHQVHSHIIKKGLEQDHSLVAHFISLCHS--LATP-------------------------LSYSTAV 92 (574)
Q Consensus 40 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~~~~-------------------------~~~A~~~ 92 (574)
++.++. .+...+.--+++.|...|.+.++.+-..|+ .+.+ ...+ -+-|. +
T Consensus 122 L~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~-~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L 198 (625)
T KOG4422|consen 122 LLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELF-RLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-L 198 (625)
T ss_pred HHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHH-HHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-H
Confidence 444443 345566677999999999988888777776 3322 2111 12233 3
Q ss_pred hhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcc
Q 046956 93 FNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVF 172 (574)
Q Consensus 93 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 172 (574)
+-+..+++..++..||.++|+-...++|.++|++......+.+..+||.+|.+.+-.. ..+++.+|....+.||..
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchH
Confidence 3344456778999999999999999999999999998888899999999998765332 388999999999999999
Q ss_pred hHHHHHHHHHcCCChHHHHHHH----ccCC----CCChhhHHHHHHHHHhcCChHH-HHHHHhhcCC--------C----
Q 046956 173 VGTSLIDLYGKRKEISCARKVF----DEMP----ERNVVSWTAMIVGYASVGDLVE-AKTVFDLMPE--------R---- 231 (574)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~--------~---- 231 (574)
|+|+++++..+.|+++.|.+.+ .+|+ +|...+|..+|..+.+.++..+ +..++.++.. |
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 9999999999999988765544 4444 4888999999999998887754 4444433321 1
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCHhHHHHHHHHHHhCC
Q 046956 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNG 309 (574)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 309 (574)
|...|...+..|.+..+.+.|.++..-+...+ ++ ..+.. ....-|..+....|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~---------------N~-------~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGD---------------NW-------KFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---------------ch-------hhcChHHHHHHHHHHHHHHHHHHH
Confidence 23334444455555555444444433110000 00 00000 11234556667777778
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHH
Q 046956 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389 (574)
Q Consensus 310 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (574)
..+..+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|...... +...+...+++.+
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-l~eeil~~L~~~k--------- 482 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD-LREEILMLLARDK--------- 482 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH-HHHHHHHHHhcCC---------
Confidence 888888888888877778888888888888888888888888888887777554443 3333333333322
Q ss_pred hhCCCCChh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 046956 390 ETMPNRDVV---SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466 (574)
Q Consensus 390 ~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 466 (574)
..|+.. -+.....-++ ..-.+.....-.+|.+..++|. ..+..+-.+.+.|..++|.+++....+++.--|
T Consensus 483 ---~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 483 ---LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred ---CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 012111 1111111111 1111222222334444333333 344444456677777777777777755433333
Q ss_pred cHHHHH---HHHHHHhhcCCHHHHHHHHHhC
Q 046956 467 SPEHYA---CMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 467 ~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
-....+ .+++.-.+.+....|...++-+
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333333 4555556667777777777666
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-17 Score=149.57 Aligned_cols=257 Identities=16% Similarity=0.135 Sum_probs=112.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL-VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (574)
+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.... . .+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-~-~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-Q-DYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-cccccccc-ccc
Confidence 355566677777777777554433223333333 3344445556777777777777776554422 2 56666666 688
Q ss_pred CCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046956 380 GNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFE 456 (574)
Q Consensus 380 g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 456 (574)
+++++|.+++.... .++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88899988887664 3566677888888999999999999999987643 34556688888899999999999999999
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP--VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
++.+ ..+.|......++..+...|+.+++.++++... ...++..|..+..++...|++++|+..++++.+.+|+|+
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9997 344457888899999999999999888887761 233455778888999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.+...+++++...|+.++|..+.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-13 Score=123.34 Aligned_cols=318 Identities=14% Similarity=0.126 Sum_probs=203.7
Q ss_pred HHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHh-HHHHHHHHHHhCCCchHHHHHHH
Q 046956 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV-AWSALISGYAQNGQPDEAVKIFS 319 (574)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~ 319 (574)
-.+.+.|....|+..+......-+..|.+-+....-..+.+.+..+...+...+.. .--.+..++....+.+++..-.+
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e 251 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKE 251 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554332333334444443333333444333333333322111 11123345555556777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCC-CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChh
Q 046956 320 DMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVV 398 (574)
Q Consensus 320 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (574)
.....|++-+...-+....+.....++++|+.+|+.+.+..+ ..+...+|+.++-.-..+.++.---...-.+.+--+.
T Consensus 252 ~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~E 331 (559)
T KOG1155|consen 252 RLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPE 331 (559)
T ss_pred HHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcc
Confidence 777777666666656666666677778888888888877643 2223334554443322222222211222223333445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
|..++..-|.-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|.+.++.+++ -.+.|-..|..|+++
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 666677777778888888888888887 45655 4777777788888888888888888885 445566778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
|.-.+...-|+-+|+++ ..+| |...|.++...|.+.++.++|++.|++++...-.+..++..|+++|.+.++.++|..
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 88888888888888887 5555 577888888888888888888888888888877777888888888888888888888
Q ss_pred HHHHHHh
Q 046956 556 VRSKMKE 562 (574)
Q Consensus 556 ~~~~~~~ 562 (574)
.+++.++
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 8877664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-13 Score=121.15 Aligned_cols=392 Identities=14% Similarity=0.161 Sum_probs=278.1
Q ss_pred chHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC--C-cchHHHHHHHHHc
Q 046956 172 FVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--S-NVSWNALIGGLVK 245 (574)
Q Consensus 172 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~ 245 (574)
..|.....-=..++++..|.++|++..+ .+...|--.+..-.++..+..|..++++.... - ...|...+..--.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3344334444445666677777777664 45566766777777777777777777766542 1 1233334444456
Q ss_pred cCChHHHHHHHh---cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCHhHHHHHHHHHHhCCCchHHHHHHHH
Q 046956 246 IGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP--DRDVVAWSALISGYAQNGQPDEAVKIFSD 320 (574)
Q Consensus 246 ~~~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 320 (574)
.|++..|.++|+ +. +|+...|.+.|+.-.+-..++.|..++++.. .|++.+|--....-.+.|+...|..+|+.
T Consensus 154 LgNi~gaRqiferW~~w-~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW-EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred hcccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 778888888887 33 6888888888888888888888988888743 58888888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHH----hccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHh------
Q 046956 321 MCSKNVQPDEFILVSLMSAC----SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE------ 390 (574)
Q Consensus 321 m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------ 390 (574)
..+. .-|...-..+..++ ..+...+.|..+++..+..-+......+|..+...--+-|+.....+..-
T Consensus 233 Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 233 AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 7654 22233323333333 44566788888888888776665555567766666666677655554432
Q ss_pred --hCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHH----H----HHhccCcHHHHHHHH
Q 046956 391 --TMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV--AFTIVL----T----ACSHVGLVEDGWRFF 455 (574)
Q Consensus 391 --~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~----~----~~~~~g~~~~a~~~~ 455 (574)
.+.+ -|-.+|--.++.--..|+.+...++|++.+.. ++|-.. .|...+ + .-....+.+.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2222 25567777888878889999999999999875 566432 222111 1 123467889999999
Q ss_pred HHhHhhcCCCCcHHHHHH----HHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 456 EAMQNVYAIVPSPEHYAC----MVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
+.+++ -++....++.. .+....++.++..|.+++..+ +..|...++...+..-.+.++++....+|++.++-.
T Consensus 390 q~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 390 QACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99886 45544555544 344556888999999999877 778889999999988889999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 569 (574)
|.+..+|...+.+-...|+++.|..+|.-++.+.....|
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 999999999999999999999999999988877654444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-13 Score=133.93 Aligned_cols=352 Identities=14% Similarity=0.122 Sum_probs=218.7
Q ss_pred HHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHh---cCCCCchhHHHHHHHHHHhcCChHHH
Q 046956 210 VGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDMTSA 283 (574)
Q Consensus 210 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (574)
..+...|+.++|.+++.++.+. ....|..|...|-..|+.+++...+- .+.+.|...|..+.....+.|++++|
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3344458888888888887664 45567777777777777777766655 45456667777777777777777777
Q ss_pred HHHHhhCCCC---CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCcchHHHHHHHH
Q 046956 284 RSLFEAAPDR---DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI----LVSLMSACSQVGNLDLSNWVDSYL 356 (574)
Q Consensus 284 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~ 356 (574)
.-.|.+..+. +...+---+..|-+.|+...|+..|.++.....+.|..- ...++..+...++.+.|.+.++..
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777766652 333444455667777777777777777776532222211 222233344444445555555444
Q ss_pred HHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCC
Q 046956 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS--EGLTP 430 (574)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p 430 (574)
...+........++.++.++.+...++.|......... +|..-|..- ..++ .-+.-... .++.+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-----~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-----EEPNALCEVGKELSY 376 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-----ccccccccCCCCCCc
Confidence 43222222222445555555555555555444433321 111111000 0000 00000001 12233
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCC--CcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CCCHHHHHH
Q 046956 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIV--PSPEHYACMVDLLGRTGHLKSAYELLNSMPV---EPHASAWGA 505 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~ 505 (574)
+...+ .+.-++.+.+..+....+....... .+. -+...|..+.++|...|++.+|+++|..+.. ..+...|..
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 33331 2222344444444444444444443 433 3468899999999999999999999998832 234668999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCccc
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSS 573 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~ 573 (574)
+...|...|.+++|++.|++++...|++..+...|+.+|.+.|+.++|.+++..+...+.+.-+++.|
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999887666555666665
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-12 Score=114.71 Aligned_cols=415 Identities=16% Similarity=0.205 Sum_probs=273.2
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHh--ccCCcHHHH-HHHHHHHHhCCCCCcchHHHH
Q 046956 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS--HVLSVREGT-AIHAAVIRWGVDEDVFVGTSL 177 (574)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~l 177 (574)
+.+-|.++. +..+|...++.-+|+.|.+.|+..+...-..|++..+ ...++--++ +.|-.|...| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345555555 4557899999999999999998877776666665433 333333222 3344444444 3333333
Q ss_pred HHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC----CcchHHHHHHHHHccCChHHHH
Q 046956 178 IDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNALIGGLVKIGDLRSAR 253 (574)
Q Consensus 178 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 253 (574)
+.|+..+ ++-+...++..++..+|.++++--..+.|.++|++.... +..+||.+|.+-.-..+-+...
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~ 262 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVA 262 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHH
Confidence 2344433 555555667789999999999999999999999987653 6778888887665544433333
Q ss_pred HHHh-cCCCCchhHHHHHHHHHHhcCChHHHHHHH----hhCC----CCCHhHHHHHHHHHHhCCCchH-HHHHHHHHHH
Q 046956 254 QLFD-EMPERNVVSYTTMIDGYAKVGDMTSARSLF----EAAP----DRDVVAWSALISGYAQNGQPDE-AVKIFSDMCS 323 (574)
Q Consensus 254 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~ 323 (574)
+... +| .||..|+|+++.+..+.|+++.|.+.+ .+|+ +|...+|..+|..+++.++..+ |..++.+...
T Consensus 263 EMisqkm-~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 263 EMISQKM-TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHhhc-CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 3333 55 899999999999999999988876554 4443 4788899999999999888754 4555555443
Q ss_pred ----CCCC---C-CHHHHHHHHHHHhccCCcchHHHHHHHHHHh------CCCCChhhHHHHHHHHhHhcCCHHHHHHHH
Q 046956 324 ----KNVQ---P-DEFILVSLMSACSQVGNLDLSNWVDSYLSRS------HMDLSRAHVIAALVDMNAKCGNMDRAAELF 389 (574)
Q Consensus 324 ----~~~~---p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (574)
+.++ | |...|...+..|.+..+.+.|.++...+... |........|..+..+.+.....+.-...|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2 4567788888999999999999888776532 222222324567777888888889889999
Q ss_pred hhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-c--------HHH-----H
Q 046956 390 ETMPN----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG-L--------VED-----G 451 (574)
Q Consensus 390 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~--------~~~-----a 451 (574)
+.+.. |+..+-..++++.-..|.++-.-++|..++..|..-+......++..+++.. . +.. |
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 88873 6777777788888888888888888888887764444333222333233222 0 000 1
Q ss_pred HHHH-------HHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHH
Q 046956 452 WRFF-------EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPHASAWGALLGACKLYSDIE 517 (574)
Q Consensus 452 ~~~~-------~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~ 517 (574)
..++ .++. ...-.....+.++-.+.+.|..++|.+++... +..|.......++......++..
T Consensus 502 ad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 1111 1122 22334456677777888889998888887665 12233333335556667778888
Q ss_pred HHHHHHHHHHhhCCC
Q 046956 518 LGELVANRLFELEPQ 532 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~ 532 (574)
.|...++-+...+-+
T Consensus 579 qA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 579 QAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHHcCch
Confidence 888888888665433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-13 Score=121.33 Aligned_cols=352 Identities=11% Similarity=0.104 Sum_probs=255.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchh--HHHHHHHHHHhc
Q 046956 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV--SYTTMIDGYAKV 277 (574)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~ 277 (574)
.|...+-.....+.+.|....|++.|......-+..|.+.+....-..+.+.+..+..++ ..|.. .--.+..++-..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l-~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL-PSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC-cccchHHHHHHHHHHHHHH
Confidence 455555555566778899999999999888766777777666666666666666666555 32211 112234555555
Q ss_pred CChHHHHHHHhhCCC---C-CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCcc-hHH
Q 046956 278 GDMTSARSLFEAAPD---R-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV--QPDEFILVSLMSACSQVGNLD-LSN 350 (574)
Q Consensus 278 g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~-~a~ 350 (574)
.+.+++..-.+.... + +...-+....+.-...++++|+.+|+++.+... --|..+|+.++-.-....++. .|.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 666666655554433 2 222233334455677899999999999998731 126678887776543322221 111
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 427 (574)
.++ .+ ....|. +...+++.|.-.++.++|...|+...+ .....|+.|..-|...++...|++.|++.++
T Consensus 321 ~v~-~i--dKyR~E---TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 321 NVS-NI--DKYRPE---TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHH-Hh--ccCCcc---ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 111 11 111121 566788889999999999999999885 3456899999999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 046956 428 LTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWG 504 (574)
Q Consensus 428 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 504 (574)
+.| |-..|..|.++|.-.+...=|+-+|+++.. -.+-|...|.+|+++|.+.++.++|++.|++. ..+.+...+.
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 455 556999999999999999999999999986 44556899999999999999999999999988 2344667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-------hCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 505 ALLGACKLYSDIELGELVANRLFE-------LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.+...+.+.++.++|.+.|++.++ ..|....+..-|+.-+.+.+++++|..+......
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999999999999999999999887 3455556667788889999999998876655543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-14 Score=126.98 Aligned_cols=202 Identities=13% Similarity=0.203 Sum_probs=107.3
Q ss_pred HHhcCChHHHHHHHhhCCCCCHhHHHHH---HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHH
Q 046956 274 YAKVGDMTSARSLFEAAPDRDVVAWSAL---ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 350 (574)
....|++++|.+.|++....|..+-.+| .-.+-..|+.++|++.|-++... +..+..+...+...|....+...|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3345666666666666655544332222 22344556666666666555432 2334455555555665555555555
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 427 (574)
+++.+... +.|+.+.+.+.|...|-+.|+-..|..++-.-- .-++.+..=|...|....-+++++.+|++..-
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 55544332 222222256666666666666666655543322 12444444455555555555666666665544
Q ss_pred CCCCHHHHHHHHHHH-hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC
Q 046956 428 LTPDEVAFTIVLTAC-SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 482 (574)
+.|+..-|..++..| .+.|++.+|..+|+...+ .++.|..+..-|++.+...|
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 456666665555443 345666666666666655 55556666665665555554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-14 Score=133.30 Aligned_cols=279 Identities=15% Similarity=0.042 Sum_probs=222.2
Q ss_pred ChHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCcchHHHH-
Q 046956 279 DMTSARSLFEAAPD--RD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSNWV- 352 (574)
Q Consensus 279 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~- 352 (574)
+..+|+..|..+.. .| ......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+. -+...
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 56888999988554 23 3455678899999999999999999998752 122677888888765332 11222
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046956 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR---DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429 (574)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 429 (574)
-+.+.+... ..+..|-++++.|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.
T Consensus 410 aq~Li~~~~--~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDP--NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHhhCC--CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 223333332 22338999999999999999999999998853 557888888889999999999999999886 56
Q ss_pred CCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 046956 430 PDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGAL 506 (574)
Q Consensus 430 p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 506 (574)
|... .|..+...|.+.++++.|.-.|+++.+ --+-+......++..+.+.|+.++|+.+++++ ..+| |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 6654 888899999999999999999999985 23334566777888999999999999999998 4444 45555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (574)
...+...+++++|+..++++.++.|++..++..++.+|.+.|+.+.|+.-|.-+.+-+++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6778889999999999999999999999999999999999999999999998887655543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-10 Score=107.65 Aligned_cols=480 Identities=14% Similarity=0.178 Sum_probs=298.0
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCC------CCC
Q 046956 61 IKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE------AVP 134 (574)
Q Consensus 61 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------~~~ 134 (574)
.+..++....+|...+ .+....+-++.+.+++++..+-++..-+-.|.-++..+++++|.+.+....... .+.
T Consensus 130 raLpvtqH~rIW~lyl-~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkS 208 (835)
T KOG2047|consen 130 RALPVTQHDRIWDLYL-KFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKS 208 (835)
T ss_pred HhCchHhhccchHHHH-HHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccc
Confidence 3334455556666666 666677777888888888777667777778888888888888888887765432 223
Q ss_pred CcchHHHHHHHHhccCCcHHH---HHHHHHHHHhCCCCC--cchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHH
Q 046956 135 DKYTFPLVIKACSHVLSVREG---TAIHAAVIRWGVDED--VFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTA 207 (574)
Q Consensus 135 ~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 207 (574)
+...|.-+....++.-+.-.. ..+.+.++.. -+| -..|.+|.+-|.+.|++++|.++|++... -++.-++.
T Consensus 209 n~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ 286 (835)
T KOG2047|consen 209 NHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQ 286 (835)
T ss_pred hhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHH
Confidence 445555555544443332222 2233332221 123 24688889999999999999999987654 22222333
Q ss_pred HHHHHHhc----------------C------ChHHHHHHHhhcCCCC---------------cchHHHHHHHHHccCChH
Q 046956 208 MIVGYASV----------------G------DLVEAKTVFDLMPERS---------------NVSWNALIGGLVKIGDLR 250 (574)
Q Consensus 208 li~~~~~~----------------g------~~~~a~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~ 250 (574)
+-+.|+.- | +++-.+..|+.+...- +..|..-+. ...|+..
T Consensus 287 ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~ 364 (835)
T KOG2047|consen 287 IFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAA 364 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChH
Confidence 33333321 1 1222333344333221 112221111 1123333
Q ss_pred HHHHHHhc----C---CC--CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC-------HhHHHHHHHHHHhCCCchHH
Q 046956 251 SARQLFDE----M---PE--RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD-------VVAWSALISGYAQNGQPDEA 314 (574)
Q Consensus 251 ~a~~~~~~----~---~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A 314 (574)
+-...+.+ + +. .-...|..+...|-..|+++.|..+|++..+-+ ..+|......-.+..+++.|
T Consensus 365 ~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 365 EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33333321 1 01 123478889999999999999999999987632 24566666777788899999
Q ss_pred HHHHHHHHHCCCC----------C-------CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhH
Q 046956 315 VKIFSDMCSKNVQ----------P-------DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377 (574)
Q Consensus 315 ~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (574)
+++.+......-. | +...|...+..-...|-++....+++.+.+..+..+. +.-..+..+.
T Consensus 445 l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLE 522 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLE 522 (835)
T ss_pred HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHH
Confidence 9998887542111 1 2234555555556678888889999999987766554 3444555566
Q ss_pred hcCCHHHHHHHHhhCCC----CCh-hHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCc
Q 046956 378 KCGNMDRAAELFETMPN----RDV-VSYCSMIKGLSIH---GHGRQAVSLFDRMLSEGLTPDEVA--FTIVLTACSHVGL 447 (574)
Q Consensus 378 ~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~ 447 (574)
...-++++.++|++-.. |++ ..|+..+.-+.+. ...+.|..+|++.++ |++|...- |......-.+.|.
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhH
Confidence 67778999999988663 555 4788877666542 368999999999998 67777652 3233333445699
Q ss_pred HHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH---HHHHhcCCHHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPS--PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALL---GACKLYSDIELGEL 521 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~~~~~~~~~~a~~ 521 (574)
...|+.+++++.. ++++. ...|+..|.-....=-......+++++ ..-|+...-...+ ..-.+.|.+++|..
T Consensus 602 ar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 602 ARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 9999999999887 66655 366777665433322223334444444 2335544433333 45578899999999
Q ss_pred HHHHHHhh-CCC-CchhHHHHHHHHHhcCCc
Q 046956 522 VANRLFEL-EPQ-NAGSYVLLSNIYATADRW 550 (574)
Q Consensus 522 ~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~ 550 (574)
+|...-++ +|. ++..|...-..-.+.|+-
T Consensus 680 Iya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 680 IYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 99998887 454 456777777777888883
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-14 Score=132.84 Aligned_cols=248 Identities=15% Similarity=0.163 Sum_probs=198.5
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCC-CCChhhHHHHHHHHhHhcCCHHH-H
Q 046956 308 NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-DLSRAHVIAALVDMNAKCGNMDR-A 385 (574)
Q Consensus 308 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~-A 385 (574)
.-+..+|+..|....+. +.-+......+..+|...++++++..+|+.+.+..+ .....++|...+.-+-+.-.+.. |
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 34578999999995443 444567778889999999999999999999987543 23333367666655443222221 1
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC
Q 046956 386 AELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI 464 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 464 (574)
.++.+ ..+..+.+|-++..+|.-+++++.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.++.
T Consensus 411 q~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 411 QDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 22222 2234678999999999999999999999999998 677 456999999999999999999999999874
Q ss_pred CCcHHHHH---HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 465 VPSPEHYA---CMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 465 ~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
.++.+|+ -++..|.++++++.|.-.|+++ .+.|. ......++..+.+.|+.++|++++++++.++|.|+-.-+.
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 3445555 4678899999999999999998 77885 4556667788999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 540 LSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 540 l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.+.++...+++++|...++++++--
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999999997644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-12 Score=125.70 Aligned_cols=275 Identities=9% Similarity=0.041 Sum_probs=171.6
Q ss_pred cCChHHHHHHHhhCCCC--C-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCcchHHH
Q 046956 277 VGDMTSARSLFEAAPDR--D-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV--SLMSACSQVGNLDLSNW 351 (574)
Q Consensus 277 ~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 351 (574)
.|++++|++.+....+. + ...|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46677776666654432 1 222322334446677777777777777653 44433222 22445666777777777
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC---Chh--------HHHHHHHHHHHcCChHHHHHHH
Q 046956 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR---DVV--------SYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--------~~~~li~~~~~~~~~~~a~~~~ 420 (574)
.++.+.+..+.... +...+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~P~~~~--al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVAPRHPE--VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcCCCCHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777665543332 5667777777777777777777666531 111 2333333333444555555666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 046956 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH 499 (574)
Q Consensus 421 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 499 (574)
+.+.+. .+.++.....+...+...|+.++|...+++..+. +|+.... ++.+....|+.+++.+.+++. +..|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 655332 2445667777788888888888888888777752 4444222 233334557888888888776 44565
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 500 AS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 500 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.. ....+...|...+++++|.+.|+++++..|++. .+..|+.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44 455666888888888888888888888888743 456788888888888888888876654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-11 Score=111.91 Aligned_cols=262 Identities=11% Similarity=-0.012 Sum_probs=207.3
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
++........-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+-..+++.-+.... .|.+++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~--sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL--SWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc--chhhHH
Confidence 4555556666778889999999999998876 3555556666666788888887777777777776555444 578888
Q ss_pred HHhHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHH
Q 046956 374 DMNAKCGNMDRAAELFETMPNR---DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVE 449 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~ 449 (574)
-.|.-.|+..+|.+.|.+...- -...|-.+..+|+..|..|+|+..|...-+. -|.. ..+..+..-|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHH
Confidence 8888889999999999887643 3358999999999999999999999887773 3332 24445566688899999
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 046956 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP--------VEP-HASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
.|.++|.++.. -.+-|+..++.+.-.....+.+.+|..+|+... ..+ -.++++.+..+|++.+.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999885 445567888888888888899999999987751 111 3456888889999999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..+++++.+.|.++.++..++-+|...|+.+.|...|.+..-
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-11 Score=108.62 Aligned_cols=404 Identities=10% Similarity=0.025 Sum_probs=251.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCC-cchHHHHHHHH
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPD-KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDED-VFVGTSLIDLY 181 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 181 (574)
+-....-|.++|++++|+..|.+.+.. .|+ ...|.-..-+|...|+++++.+.-...++.+ |+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 334455677888888888888888775 566 5566666666778888888888777776643 33 23444555666
Q ss_pred HcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhh---------cCC--CCcchHHHHHHHHHccCChH
Q 046956 182 GKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL---------MPE--RSNVSWNALIGGLVKIGDLR 250 (574)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------~~~--~~~~~~~~l~~~~~~~~~~~ 250 (574)
-..|++++|+.= +|-.++..++....-.--+.++++. +.+ +....-...+..|...=..+
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 667777766431 1112222222111111111111111 110 11111111222222110000
Q ss_pred HHHHHHhcCCCCchhHHHHHHHH----HHh-cCChHHHHHHHhhCC-------CCC---------HhHHHHHHHHHHhCC
Q 046956 251 SARQLFDEMPERNVVSYTTMIDG----YAK-VGDMTSARSLFEAAP-------DRD---------VVAWSALISGYAQNG 309 (574)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~l~~~----~~~-~g~~~~A~~~~~~~~-------~~~---------~~~~~~li~~~~~~~ 309 (574)
--. .+..+.......+... +.. ...+..|...+.+-. ..+ ..+.......+.-.|
T Consensus 265 ~~~----~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 265 PKP----LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred ccc----cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 000 0000111112222211 111 113444444433211 111 223333334455678
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHH
Q 046956 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389 (574)
Q Consensus 310 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (574)
+...|...|+..++....++. .|..+...|....+.++..+.|....+.++..+. +|..-++++.-.+++++|..-|
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999887543333 3777778899999999999999999987765554 7888999999999999999999
Q ss_pred hhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC
Q 046956 390 ETMPNR---DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP 466 (574)
Q Consensus 390 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 466 (574)
++...- ++..|-.+..+.-+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+.+++. .|
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~ 493 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EP 493 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---cc
Confidence 998853 4456666666666888999999999999885 4444569999999999999999999999999853 33
Q ss_pred c---------HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 467 S---------PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 467 ~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
. +.+.-.++-.- -.+++..|.++++++ ...|. ...+..+...-.+.|+.++|+++|++...+...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3 22222222222 348999999999988 66775 457788888999999999999999998877433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-11 Score=119.84 Aligned_cols=280 Identities=15% Similarity=0.094 Sum_probs=176.1
Q ss_pred cCChHHHHHHHhhcCCCC--cc-hHHHHHHHHHccCChHHHHHHHhcCCC--CchhHHH--HHHHHHHhcCChHHHHHHH
Q 046956 215 VGDLVEAKTVFDLMPERS--NV-SWNALIGGLVKIGDLRSARQLFDEMPE--RNVVSYT--TMIDGYAKVGDMTSARSLF 287 (574)
Q Consensus 215 ~g~~~~a~~~~~~~~~~~--~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~g~~~~A~~~~ 287 (574)
.|+++.|.+.+....+.. +. .|.....+..+.|+++.|...+..+.+ |+..... .....+...|++++|.+.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 577777776666544321 11 222223333455555555555553322 2222111 2234455555555555555
Q ss_pred hhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC
Q 046956 288 EAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364 (574)
Q Consensus 288 ~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 364 (574)
+++.+ .+......+...|.+.|++++|.+++..+.+.+..++ .....+-.
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~~-------------------------- 229 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLEQ-------------------------- 229 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHHH--------------------------
Confidence 54433 2344444555555555555555555555554432211 11110000
Q ss_pred hhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046956 365 RAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441 (574)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 441 (574)
..+..++.......+.+...++++.+. ..++.....+...+...|+.++|...+++..+. .|+.... ++.+
T Consensus 230 --~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~ 303 (398)
T PRK10747 230 --QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIP 303 (398)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHh
Confidence 022222333334445566677777765 357778888999999999999999999998883 5555322 2333
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
....++.+++.+..+...+ ..+-|+..+..+...+.+.|++++|.+.|+.+ ...|+...+..+...+.+.|+.++|.
T Consensus 304 ~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4456999999999999987 55667788889999999999999999999988 77899999888999999999999999
Q ss_pred HHHHHHHhh
Q 046956 521 LVANRLFEL 529 (574)
Q Consensus 521 ~~~~~~~~~ 529 (574)
+++++.+.+
T Consensus 382 ~~~~~~l~~ 390 (398)
T PRK10747 382 AMRRDGLML 390 (398)
T ss_pred HHHHHHHhh
Confidence 999999876
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.8e-12 Score=108.76 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=67.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 409 IHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
...+.+.|..++.+..+. .|+.+ .-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++.
T Consensus 192 ~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 192 ASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 334444455555544442 23222 2223333444455555555555544443 2222234444445555555555555
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH--hcCCchHHHHHHHHHHhCC
Q 046956 488 YELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA--TADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 488 ~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~ 564 (574)
...+.++ ...+....-..+........-.+.|...+.+-+..+|.-...+..+.--.. .-|.+.+-...++.|....
T Consensus 269 ~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 269 LNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 5544444 222333323333322223333444555555555555553322222221111 2334555556666666555
Q ss_pred CccCC
Q 046956 565 LRKIP 569 (574)
Q Consensus 565 ~~~~~ 569 (574)
++..|
T Consensus 349 l~~~~ 353 (389)
T COG2956 349 LRRKP 353 (389)
T ss_pred HhhcC
Confidence 55444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-11 Score=117.57 Aligned_cols=222 Identities=10% Similarity=0.036 Sum_probs=98.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhh------HHHHHHHH
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH------VIAALVDM 375 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~ 375 (574)
...+...|++++|...++.+.+.. +-+......+...+...|+++.+...+..+.+.+...+... .+..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554442 11333444444444555555555555555444433222110 00000100
Q ss_pred hHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHH-HHHHHhccCcHH
Q 046956 376 NAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVA--FTI-VLTACSHVGLVE 449 (574)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~-l~~~~~~~g~~~ 449 (574)
-......+...+.++...+ .+...+..+...+...|++++|...+++..+. .||... +.. ..-.....++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 0111122233333333331 25555556666666666666666666666653 233321 011 111122234555
Q ss_pred HHHHHHHHhHhhcCCCCcH--HHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046956 450 DGWRFFEAMQNVYAIVPSP--EHYACMVDLLGRTGHLKSAYELLNS--M-PVEPHASAWGALLGACKLYSDIELGELVAN 524 (574)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 524 (574)
.+.+.+++..+ ..+-|+ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.++++
T Consensus 317 ~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 317 KLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555554 222222 3444555555555555555555552 2 334555555555555555555555555555
Q ss_pred HHHh
Q 046956 525 RLFE 528 (574)
Q Consensus 525 ~~~~ 528 (574)
+++.
T Consensus 395 ~~l~ 398 (409)
T TIGR00540 395 DSLG 398 (409)
T ss_pred HHHH
Confidence 5443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-14 Score=132.64 Aligned_cols=252 Identities=15% Similarity=0.167 Sum_probs=105.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC----CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 269 TMIDGYAKVGDMTSARSLFEAA-PD----RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343 (574)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 343 (574)
.+...+.+.|++++|++++++. .. .|...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466677778888888887432 22 24556666666677778888888888888765422 44455555555 577
Q ss_pred CCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHHcCChHHHHH
Q 046956 344 GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-----NRDVVSYCSMIKGLSIHGHGRQAVS 418 (574)
Q Consensus 344 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~ 418 (574)
+++++|..+.....+.... .. .+...+..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~--~~-~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD--PR-YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccccc--cc-hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7788887777665544322 22 56667777888888888888887743 3567788888899999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 046956 419 LFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV 496 (574)
Q Consensus 419 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 496 (574)
.+++.++ ..|+ ......++..+...|+.+++.++++...+. .+.++..+..++.+|...|+.++|...+++. ..
T Consensus 168 ~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 168 DYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 9999998 4565 557888888999999999999999888874 3666778888999999999999999999988 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 497 EP-HASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 497 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
.| |+.....+..++...|+.++|.++.+++++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp STT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 55 5666677779999999999999998887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-11 Score=118.68 Aligned_cols=282 Identities=8% Similarity=0.004 Sum_probs=204.3
Q ss_pred HHhcCChHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCcch
Q 046956 274 YAKVGDMTSARSLFEAAPD--RD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE--FILVSLMSACSQVGNLDL 348 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~ 348 (574)
....|+++.|.+.+.+..+ ++ ...+-....+..+.|+++.|.+.+.+..+.. |+. ..-......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3467999999999887665 22 3445555677888999999999999987653 443 333445777888999999
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHH----HHHHHHHHcCChHHHHHHHH
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYC----SMIKGLSIHGHGRQAVSLFD 421 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~~~~~~a~~~~~ 421 (574)
|...++.+.+..+... .+...+...+...|++++|.+.+..+.+ .+...+. .........+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~P~~~--~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHK--EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999998875544 3788999999999999999999998874 2333232 11112233333344445555
Q ss_pred HHHHCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhC-C
Q 046956 422 RMLSEGL---TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--YACMVDLLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 422 ~m~~~g~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (574)
++.+... +.+...+..+...+...|+.++|.+.+++..+. .+.+... .....-.....++.+.+.+.+++. +
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 5555321 136778888899999999999999999999974 2333211 111222233457888898888877 4
Q ss_pred CCCCH---HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 496 VEPHA---SAWGALLGACKLYSDIELGELVAN--RLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 496 ~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..|+. ....++...+.+.|++++|.+.|+ .+++..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45544 456688899999999999999999 57777887544 67999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-10 Score=108.46 Aligned_cols=280 Identities=10% Similarity=0.052 Sum_probs=223.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD---VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
+.+......-.+-+...+++.+..++++.+.+.| ...+-.-|.++...|+..+-..+=.++.+. .+-...+|-.+.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 4556666677778888999999999999887643 455666677889999999888888888876 455678899999
Q ss_pred HHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 046956 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGR 414 (574)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 414 (574)
--|...|+..+|++++.+....+....+ .|-.++..|+-.|.-++|+..+....+ .....+--+..-|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgp--aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGP--AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccH--HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 8888999999999999999887776666 588899999999999999988876553 22222333455677889999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc-CCC----CcHHHHHHHHHHHhhcCCHHHHH
Q 046956 415 QAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY-AIV----PSPEHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~l~~~~~~~g~~~~A~ 488 (574)
-|.+.|.+... +.|+ +...+-+.-.....+.+.+|..+|+.....- .+. ....+++.|+.+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999887 5565 5577777777778899999999999887310 111 13456889999999999999999
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 489 ELLNSM-P-VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 489 ~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
..+++. . ...+..++.++.-.|...|+++.|+..|.+++-++|++..+-..|..+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999987 3 34477888888899999999999999999999999999887777765543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-11 Score=103.73 Aligned_cols=208 Identities=13% Similarity=0.155 Sum_probs=102.9
Q ss_pred CChHHHHHHHhhcCCCCcchH---HHHHHHHHccCChHHHHHHHhcCCC-Cch------hHHHHHHHHHHhcCChHHHHH
Q 046956 216 GDLVEAKTVFDLMPERSNVSW---NALIGGLVKIGDLRSARQLFDEMPE-RNV------VSYTTMIDGYAKVGDMTSARS 285 (574)
Q Consensus 216 g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~~g~~~~A~~ 285 (574)
++.++|.++|-+|.+.|+.|+ .+|.+.|.+.|..|.|+.+++.+.+ ||. .....|..-|...|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 445555555555544433332 2344445555555555555553322 221 233445666777777777777
Q ss_pred HHhhCCCCC---HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCcchHHHHHHHHHH
Q 046956 286 LFEAAPDRD---VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE----FILVSLMSACSQVGNLDLSNWVDSYLSR 358 (574)
Q Consensus 286 ~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 358 (574)
+|..+.+.+ ..+...|+..|-...+|++|++.-+++.+.+-.+.. ..|..+...+....+.+.|...+.+..+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 777776632 345666777777888888888877777766544332 2233333333344444444444444444
Q ss_pred hCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV----VSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
.+.+.... --.+++.+...|+++.|.+.++.+.+.|+ .+...|..+|...|+.++....+.++.+
T Consensus 209 a~~~cvRA--si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 209 ADKKCVRA--SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hCccceeh--hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 43333221 22234444444444444444444443222 1233333444444444444444444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-10 Score=108.71 Aligned_cols=475 Identities=12% Similarity=0.052 Sum_probs=295.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC----CCChhhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 046956 54 HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV----NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIR 129 (574)
Q Consensus 54 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 129 (574)
..++..+...|+.|+..+|..++ .-|+..|+.+.|- +|.-|. .-+...++.++.+..+.|+.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLi-arYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLI-ARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHH-HHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 35788888999999999999999 8899999999998 887775 235567999999999999887764
Q ss_pred CCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHH
Q 046956 130 EEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTA 207 (574)
Q Consensus 130 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 207 (574)
.|...||..|+.+|...||+..-..+-+.+ ..+...+...|--..-..++..+.- .....-..
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdL------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDL------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHH------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 678899999999999999987622222212 2233344455554444555544321 11112233
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcc-hHHHHHHHHHcc-CChHHHHHHHhcCCC-CchhHHHHHHHHHHhcCChHHHH
Q 046956 208 MIVGYASVGDLVEAKTVFDLMPERSNV-SWNALIGGLVKI-GDLRSARQLFDEMPE-RNVVSYTTMIDGYAKVGDMTSAR 284 (574)
Q Consensus 208 li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 284 (574)
.+.-..-.|.++.+++++..++..... ++..+++-+... ..+++-........+ +++.++.++++.-...|+++.|.
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 445555667788888888777643111 111124444332 334555554444434 89999999999999999999999
Q ss_pred HHHhhCCCCC----HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcc---------h---
Q 046956 285 SLFEAAPDRD----VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD---------L--- 348 (574)
Q Consensus 285 ~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---------~--- 348 (574)
.++.+|.+.. ..-+-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|... .
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 9999998753 3334444444 7888899999999999999999999988777666533221 0
Q ss_pred ------------HHHHHHH------------HHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-------CCh
Q 046956 349 ------------SNWVDSY------------LSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-------RDV 397 (574)
Q Consensus 349 ------------a~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~ 397 (574)
+.+.++. ..=.|...... ++...... ...|+-++.+.+...+.. .++
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~a-iws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEA-IWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchH-HHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchH
Confidence 1111100 00112233332 33333222 225666666666666553 234
Q ss_pred hHHHHHHHHHHHcCC----------------------hHHHHHHHHHHHHCCCCCCHH----------------------
Q 046956 398 VSYCSMIKGLSIHGH----------------------GRQAVSLFDRMLSEGLTPDEV---------------------- 433 (574)
Q Consensus 398 ~~~~~li~~~~~~~~----------------------~~~a~~~~~~m~~~g~~p~~~---------------------- 433 (574)
..|..++.-|.+.-+ ..+..++... ..||..
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhh
Confidence 455554444433211 1111111111 122221
Q ss_pred ------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHH
Q 046956 434 ------AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP-----VEPHASA 502 (574)
Q Consensus 434 ------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~ 502 (574)
.-+.++..|...-+..+++..-++.... .+ ...|..|++.+......+.|..+.++.. ...+...
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 1122233333333334444333333321 22 2678889999999999999999988873 2334556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 046956 503 WGALLGACKLYSDIELGELVANRLFEL---EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (574)
+..+...+.+.+....+..++++..+. .|........+.......|+.+.-.++++-+..-|+..
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 666777788888888888888888775 34445566666666788899999889888888777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-11 Score=110.95 Aligned_cols=195 Identities=14% Similarity=0.062 Sum_probs=163.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 677788888999999999999887663 345678888899999999999999999998853 3345677888888999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|.+.++++......+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999874222334567778889999999999999999887 3344 456777788899999999999999
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
++++++..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 192 LERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999998988999999999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-09 Score=100.39 Aligned_cols=437 Identities=15% Similarity=0.090 Sum_probs=247.4
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCCcchHHHHHHHH--HcC
Q 046956 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGV-DEDVFVGTSLIDLY--GKR 184 (574)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~--~~~ 184 (574)
+..+..+|++++|.....++...+ +-+...+..-+-+..+.+.+++|..+.+. .+. ..+.+.+ +=.+| .+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhh--HHHHHHHHHc
Confidence 344556667777777777776654 22344455555556666677766643332 111 1111110 12233 356
Q ss_pred CChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHc-cCChHHHHHHHhcCC---
Q 046956 185 KEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVK-IGDLRSARQLFDEMP--- 260 (574)
Q Consensus 185 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~--- 260 (574)
+..++|...++.....|..+...-...+.+.|++++|+.+|+.+.+.+...+...+++-+. .+..-.+ ++.+...
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~~~q~v~~v~ 171 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-QLLQSVPEVP 171 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-HHHHhccCCC
Confidence 7777777777755444555666666777788888888888888866544444333222111 1111111 1222221
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhC--------CCCC-----H-----hHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAA--------PDRD-----V-----VAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~-----~-----~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
+.+-..+......+...|++.+|+++++.. .+.| + ...-.|...+...|+.++|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 122233344455677889999999988766 2211 1 123446667788999999999999998
Q ss_pred HCCCCCCHHH---HHHHHHHHhccCCcch--HHHHHHHHHHhC---------CCCChhhHHHHHHHHhHhcCCHHHHHHH
Q 046956 323 SKNVQPDEFI---LVSLMSACSQVGNLDL--SNWVDSYLSRSH---------MDLSRAHVIAALVDMNAKCGNMDRAAEL 388 (574)
Q Consensus 323 ~~~~~p~~~~---~~~ll~~~~~~~~~~~--a~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 388 (574)
+.+ .+|... +..=+.+.....++-. ....++...... ...-.. ++...+....-.+..+.+.++
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~-i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA-IYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHH
Confidence 875 344322 2222223322222221 111111111000 000011 333333333344666777777
Q ss_pred HhhCCCCC-hhHHHHHHHHHH-H-cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHH-------
Q 046956 389 FETMPNRD-VVSYCSMIKGLS-I-HGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLVEDGWRFFE------- 456 (574)
Q Consensus 389 ~~~~~~~~-~~~~~~li~~~~-~-~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~------- 456 (574)
-....... ...+.+++.... . ...+.++.+++....+. .|.. ......+......|+++.|.+++.
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 77766422 334444443332 2 23477788888777664 3433 355566667888999999999998
Q ss_pred -HhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHH
Q 046956 457 -AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-----PVEPHASAWG----ALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 457 -~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
...+. +. .+.+-.++...+.+.++-+.|..++.+. ...+...... .....-.+.|+-++|...++++
T Consensus 408 ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 408 SSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 44432 33 3455666778888888777777776655 1122223333 3334446779999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 527 FELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
++.+|++..+...++.+|.+. +.+.|..+-+.
T Consensus 485 ~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 485 VKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999999999999988766 45666655443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-09 Score=95.49 Aligned_cols=428 Identities=11% Similarity=0.060 Sum_probs=244.2
Q ss_pred cCCChHHHHHHhhccCCC------ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHH
Q 046956 82 LATPLSYSTAVFNRIVNP------NTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155 (574)
Q Consensus 82 ~~~~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 155 (574)
...++..|+.+++--..- +...| +...+.+-|++++|+..|..+.+.. .++...+.-|.-...-.|.+.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 456777787777544321 22222 3445567788888888887777643 44555555555555566777777
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcc-
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV- 234 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 234 (574)
..+-... +-++.--..|+....+.|+-++-..+-+.+.+.. .---+|.......-.+.+|+++|.+....++.
T Consensus 111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 7665432 2223333445556666677666666555554322 22234445555556678888888887654432
Q ss_pred -hHHH-HHHHHHccCChHHHHHHHh----cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhC
Q 046956 235 -SWNA-LIGGLVKIGDLRSARQLFD----EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQN 308 (574)
Q Consensus 235 -~~~~-l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 308 (574)
..|. +.-+|.+..-++-+.+++. .. +.++..-|.......+.-+-..|.+-...+-+.-... -..+.-.++.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-~~f~~~l~rH 262 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-YPFIEYLCRH 262 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-chhHHHHHHc
Confidence 3332 3334555655555555554 22 2333333333333332211111221111111110000 1122223332
Q ss_pred -----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcC---
Q 046956 309 -----GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG--- 380 (574)
Q Consensus 309 -----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 380 (574)
.+-+.|++++-.+.+. .|. .-..++..|.+.+++.+|..+.+.+ +|.++.-|-.-+-.++..|
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl-----~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDL-----DPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhc-----CCCChHHHHHHHHHHHHhhhhc
Confidence 3456777777666543 333 2234555677888888887766544 3333312222222233333
Q ss_pred ----CHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046956 381 ----NMDRAAELFETMPN-----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 381 ----~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 451 (574)
.+.-|...|+-.-. .++.--..+...+.-..++++.+..++....- +..|...-..+..+.+..|++.+|
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEA 412 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHH
Confidence 34456666665542 22334455666667777888888888887765 333444444577888889999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHH-HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhh
Q 046956 452 WRFFEAMQNVYAIVPSPEHYA-CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL-GACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
.++|-.+... .+ .|..+|. .|.++|.+.|.++-|++++-++....+..++..++ .-|.+.+++--|-+.|+.+..+
T Consensus 413 Eelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 413 EELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9999877642 22 3445554 57789999999999999998886444555666665 7788999999899999988888
Q ss_pred CCC
Q 046956 530 EPQ 532 (574)
Q Consensus 530 ~p~ 532 (574)
+|.
T Consensus 491 DP~ 493 (557)
T KOG3785|consen 491 DPT 493 (557)
T ss_pred CCC
Confidence 876
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-09 Score=98.70 Aligned_cols=280 Identities=16% Similarity=0.131 Sum_probs=166.2
Q ss_pred cCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCCC----CchhHHHHHHHHHHhcCChHHHHHHH
Q 046956 215 VGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMPE----RNVVSYTTMIDGYAKVGDMTSARSLF 287 (574)
Q Consensus 215 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (574)
.|++..|+++..+-.+. ....|..-+++.-..|+.+.+-..+.+..+ ++..+.-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57777777776664432 222344444555556666666666664322 22334444455555666666665555
Q ss_pred hhCC---CCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC
Q 046956 288 EAAP---DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS 364 (574)
Q Consensus 288 ~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 364 (574)
+++. ..+.........+|.+.|++.....++..+.+.|.-.+...-. + .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l-----------e 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-----------------L-----------E 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------H-----------H
Confidence 4333 2445555566666666666666666666666555433321110 0 0
Q ss_pred hhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046956 365 RAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441 (574)
Q Consensus 365 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 441 (574)
. .++..+++-....+..+.-...++... +.++..-..++.-+.+.|+.++|.++.++..+++..|+. .. .-.
T Consensus 229 ~-~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~ 303 (400)
T COG3071 229 Q-QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIP 303 (400)
T ss_pred H-HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHh
Confidence 0 033444444444444444445555555 345666666777777788888888888887777666651 11 223
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
+.+.++...-++..++..+. .+.++..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|..+..++.+.|+.++|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 55667777777777776663 3334467777788888888888888888766 66777777877778888888888888
Q ss_pred HHHHHHHhh
Q 046956 521 LVANRLFEL 529 (574)
Q Consensus 521 ~~~~~~~~~ 529 (574)
+..++++..
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 877777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-09 Score=106.12 Aligned_cols=397 Identities=12% Similarity=0.045 Sum_probs=255.5
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCC----
Q 046956 160 AAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERS---- 232 (574)
Q Consensus 160 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---- 232 (574)
.++....+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|.-..|+.+.+....+.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 3334444667888888888888999999999999988764 455678888889999999999999988765432
Q ss_pred -cchHHHHHHHHH-ccCChHHHHHHHhcCC--------CCchhHHHHHHHHHHhcC-----------ChHHHHHHHhhCC
Q 046956 233 -NVSWNALIGGLV-KIGDLRSARQLFDEMP--------ERNVVSYTTMIDGYAKVG-----------DMTSARSLFEAAP 291 (574)
Q Consensus 233 -~~~~~~l~~~~~-~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~ 291 (574)
...+...-..|. +.+.++++...-.+.. .-.+..|..+.-+|...- ...++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 223333333333 3444544444333110 123445555555554321 2345566666664
Q ss_pred C---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHh-CCCCChhh
Q 046956 292 D---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS-HMDLSRAH 367 (574)
Q Consensus 292 ~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 367 (574)
+ .|..+...+.--|+..++.+.|++..++..+.+-.-+...|..+...+...+++.+|+.+.+..... +....
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--- 548 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--- 548 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh---
Confidence 3 2333333344456777889999999999888866778888888888888888998888888776543 22111
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-------------------------------CC-hhHHHHHHHHHHHcCChHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-------------------------------RD-VVSYCSMIKGLSIHGHGRQ 415 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~~~~~~~~ 415 (574)
....-+..-...++.++|......+.. .+ +.++..+..-....+ +.
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~ 626 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KS 626 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hh
Confidence 011111112223444444433222210 01 112222221111111 00
Q ss_pred HHHHHHHHHHCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 416 AVSLFDRMLSEGLTPDE--------VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
+..-.. +....+.|.. ..|......+.+.+..++|...+.++.. -.+-....|......+...|++++|
T Consensus 627 ~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 627 AGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHH
Confidence 000000 1111122222 2344556678888999999999988886 4455677888888899999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 488 YELLNSM-PVEPH-ASAWGALLGACKLYSDIELGEL--VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 488 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
.+.|... -.+|+ +....++...+...|+...|.. ++..+++.+|.++.+|..|+.++.+.|+.++|.+.|+...+-
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999877 56775 5677888899999998888877 999999999999999999999999999999999999987754
Q ss_pred C
Q 046956 564 G 564 (574)
Q Consensus 564 ~ 564 (574)
.
T Consensus 784 e 784 (799)
T KOG4162|consen 784 E 784 (799)
T ss_pred c
Confidence 4
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-10 Score=101.48 Aligned_cols=276 Identities=11% Similarity=0.053 Sum_probs=200.4
Q ss_pred cCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHH
Q 046956 277 VGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353 (574)
Q Consensus 277 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 353 (574)
.|++.+|++...+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+..-.++..............|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5778888777766443 2344555555666777888888888888776533455555666666677788888888777
Q ss_pred HHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCC-----------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 046956 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD-----------VVSYCSMIKGLSIHGHGRQAVSLFDR 422 (574)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~ 422 (574)
..+.+.+..... +.....++|.+.|++.....++.++.+.. ..+|+.+++-....+..+.-...|++
T Consensus 177 ~~ll~~~pr~~~--vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMTPRHPE--VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhCcCChH--HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777776655554 67778888888888888888888777421 23677777766666666666667776
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 046956 423 MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HA 500 (574)
Q Consensus 423 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 500 (574)
.-.+ .+-++..-..++.-+.+.|+.++|.++.++..+. +..|+.. .+ -...+-++.+.-++..++. ...| ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6544 4556666677788889999999999999999886 6666621 11 2234556666555555544 2222 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
..+.++...|.+++.+.+|...++.+++..|+ ...|..++.++.+.|+..+|.+.+++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 67788889999999999999999999998887 7889999999999999999999998876
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-08 Score=95.11 Aligned_cols=484 Identities=12% Similarity=0.151 Sum_probs=284.3
Q ss_pred hhHHHHHHHHHHhcCCChHHHHHHhhccC-----CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHH
Q 046956 69 HSLVAHFISLCHSLATPLSYSTAVFNRIV-----NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143 (574)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 143 (574)
+.++-.-+ +..-+.|++...+..|++.. ..-...|...+.-....|-++-++.+|++.++- ++..-.-.+
T Consensus 102 pRIwl~Yl-q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYL-QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CHHHHHHH-HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 34555555 66667888888888887753 223346888888888888899999999998875 233355667
Q ss_pred HHHhccCCcHHHHHHHHHHHHhC------CCCCcchHHHHHHHHHcCCChH---HHHHHHccCCC--CCh--hhHHHHHH
Q 046956 144 KACSHVLSVREGTAIHAAVIRWG------VDEDVFVGTSLIDLYGKRKEIS---CARKVFDEMPE--RNV--VSWTAMIV 210 (574)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~~--~~~~~li~ 210 (574)
..++..+++++|.+.+...+... -+.+...|.-+.+..++..+.- ....++..+.. +|. ..|.+|.+
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 77788899999998888775331 1445556777776666554322 33445555544 343 47999999
Q ss_pred HHHhcCChHHHHHHHhhcCCC--CcchHHHHHHHHHccCC----------------------hHHHHHHHhcCCC-----
Q 046956 211 GYASVGDLVEAKTVFDLMPER--SNVSWNALIGGLVKIGD----------------------LRSARQLFDEMPE----- 261 (574)
Q Consensus 211 ~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~----- 261 (574)
-|.+.|.+++|.++|++.... ...-|..+.++|+.-.. ++-...-|+.+..
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 999999999999999987653 23334444444432111 1111112221100
Q ss_pred ----------CchhHHHHHHHHHHhcCChHHHHHHHhhCCC---C------CHhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 262 ----------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---R------DVVAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 262 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
.++..|..-+.. ..|+..+-...|.+..+ | -...|..+...|-..|+.+.|..+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 112222222221 23444444444443322 1 22457777777777888888888887776
Q ss_pred HCCCCCC---HHHHHHHHHHHhccCCcchHHHHHHHHHHhCC----------CCChh------hHHHHHHHHhHhcCCHH
Q 046956 323 SKNVQPD---EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM----------DLSRA------HVIAALVDMNAKCGNMD 383 (574)
Q Consensus 323 ~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~------~~~~~l~~~~~~~g~~~ 383 (574)
+-..+-- ..+|..-...=.+..+++.|..+.+.+..... .|... .++...++.-...|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5432211 22333333333344555666665555442111 11111 13344455555566666
Q ss_pred HHHHHHhhCCCCChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCcHHHHHHHHH
Q 046956 384 RAAELFETMPNRDVVS---YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSH---VGLVEDGWRFFE 456 (574)
Q Consensus 384 ~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~---~g~~~~a~~~~~ 456 (574)
....+|+++.+--+.| .-....-+-.+.-++++.+.|++-+..=-.|+.. .|+..+.-+.+ ....+.|..+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6666776665321111 1111122234455777887777765543345553 66666655433 346889999999
Q ss_pred HhHhhcCCCCcH--HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHH-HHHHhcCCHHHHHHHHHHHHhh
Q 046956 457 AMQNVYAIVPSP--EHYACMVDLLGRTGHLKSAYELLNSMP--VEPH--ASAWGALL-GACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 457 ~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
++.+ +.+|.. ..|......-.+-|....|+++++++. .++. ...|+..+ .+...-| ......+|+++++.
T Consensus 575 qaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 575 QALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIES 651 (835)
T ss_pred HHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHh
Confidence 9998 777653 334444444456788899999999983 3332 23555555 2322233 34567899999998
Q ss_pred CCCCch--hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 530 EPQNAG--SYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 530 ~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
-|++-. .....+++-.+.|..+.|+.++..-.+
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 887543 445567788899999999999876554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-10 Score=109.33 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=164.6
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCC
Q 046956 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERN 201 (574)
Q Consensus 122 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 201 (574)
.++-.+...|+.||..||..+|..|+..|+.+.|- +|..|.....+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556667778888888888888888888877777 7777777776777777777777777777766654 567
Q ss_pred hhhHHHHHHHHHhcCChHH---HHHHHhhcCC---------------------C-CcchHHHHHHHHHccCChHHHHHHH
Q 046956 202 VVSWTAMIVGYASVGDLVE---AKTVFDLMPE---------------------R-SNVSWNALIGGLVKIGDLRSARQLF 256 (574)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~---a~~~~~~~~~---------------------~-~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (574)
..+|..|..+|...|++.. +.+.+..+.. | ....-..++....-.|-++.+.+++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888777644 2221111111 0 0011122333344455666667766
Q ss_pred hcCCC---CchhHHHHHHHHHHh-cCChHHHHHHHhhCCC-CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 046956 257 DEMPE---RNVVSYTTMIDGYAK-VGDMTSARSLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331 (574)
Q Consensus 257 ~~~~~---~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 331 (574)
..+.. ..+... +++-... ...+++-......... ++..+|..++.+-..+|+.+.|..++.+|.+.|++.+.+
T Consensus 163 ~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred hhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 54421 111111 1222222 2334555555555554 789999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 332 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
-|..++-+ .++...++.+..-|.+.|+.|+.. ++...+..+.+.|.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~se-T~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSE-TQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcc-hhHHHHHhhhcchh
Confidence 88888766 788888888999999999988877 66555555544443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-10 Score=112.44 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=137.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-------CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CC
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-------RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLS-----EGL-TP 430 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~p 430 (574)
..+.++..|...+++++|..+|+++.. ++ ..+++.|..+|.+.|++++|..++++..+ .|. .|
T Consensus 243 ~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 243 MLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 334466666777777777777666541 11 23566667777777777777776666543 122 22
Q ss_pred CHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcC--CCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-------CC
Q 046956 431 DEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYA--IVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-------PV 496 (574)
Q Consensus 431 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~ 496 (574)
... .++.+...|...+++++|..+++...+.+. +.++ ..+++.|...|...|++++|.++++++ ..
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 222 566677778889999999988887765432 2222 367889999999999999999999876 11
Q ss_pred --CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 497 --EPH-ASAWGALLGACKLYSDIELGELVANRLFEL----EPQ---NAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 497 --~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
.+. ...++.+...|.+.+++++|.++|.+...+ .|+ ....|..|+.+|.++|++++|.++.+...
T Consensus 403 ~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 403 KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 446677788899999999999999887764 444 45578899999999999999999988776
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-11 Score=103.87 Aligned_cols=226 Identities=11% Similarity=0.026 Sum_probs=164.9
Q ss_pred HHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHHc
Q 046956 334 VSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RDVV-SYCSMIKGLSIH 410 (574)
Q Consensus 334 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~ 410 (574)
..+..+|.+.|-+.+|++.++...++...++ +|..|...|.+..+...|..+|.+-.+ |..+ ....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~d---TfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD---TFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchh---HHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 3455555666666666666655555443333 566667777777777777777776653 3333 334455666677
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
++.++|.++|+...+.. +.+......+...|.-.++++-|+.+|+++.+. |+ .+++.|+.+.-+|.-.++++-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 88888888888877742 334456666777777788888888888888874 55 4667788888888888888888887
Q ss_pred HHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 491 LNSM---PVEP--HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 491 ~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|+++ -.+| ....|..+.......||+..|.+.|+-++..+|++..++++|+.+-.+.|+.++|+.+++......+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 7776 1223 3567888888888899999999999999999999999999999999999999999999988876554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-10 Score=112.65 Aligned_cols=241 Identities=14% Similarity=0.065 Sum_probs=174.4
Q ss_pred CchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc
Q 046956 310 QPDEAVKIFSDMCSKNVQPD-EFILVSLMSACS---------QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379 (574)
Q Consensus 310 ~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (574)
.+++|...|++..+. .|+ ...+..+..++. ..++.++|...++++.+.++... ..+..+...+...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~--~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP--QALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHc
Confidence 357888888888765 443 344444443332 23446788888888887665433 3677888899999
Q ss_pred CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHH
Q 046956 380 GNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 380 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
|++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998773 4 4567888899999999999999999999984 56543 3344455566789999999999
Q ss_pred HHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhh---
Q 046956 456 EAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAW-GALLGACKLYSDIELGELVANRLFEL--- 529 (574)
Q Consensus 456 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~--- 529 (574)
+++... .+| ++..+..+..++...|++++|...++++ +..|+.... +.+...+...| +.|...++++++.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 998763 334 4566778889999999999999999987 445554444 44445666666 4788877777764
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.|.++.. +..+|.-.|+-+.+..+ +++.+.+
T Consensus 506 ~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4554444 66678888887777766 8887654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-10 Score=96.58 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=110.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
...+.-.|...|+...|..-+++.++. .|+.. ++..+...|.+.|..+.|.+.|+++.+ --+-+-.+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 444556677777777777777777773 45543 777777777777777777777777764 2333456677777777
Q ss_pred hhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHH
Q 046956 479 GRTGHLKSAYELLNSMPVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (574)
|..|++++|...|+++-..|. ..+|.++..+..+.|+.+.|...++++++.+|+.+.....++......|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777777633332 3456666666667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCC
Q 046956 555 LVRSKMKERG 564 (574)
Q Consensus 555 ~~~~~~~~~~ 564 (574)
.++++....+
T Consensus 194 ~~~~~~~~~~ 203 (250)
T COG3063 194 LYLERYQQRG 203 (250)
T ss_pred HHHHHHHhcc
Confidence 7777665544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-08 Score=90.79 Aligned_cols=276 Identities=11% Similarity=0.029 Sum_probs=200.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCH---hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV---VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
+.|+.....+...+...|+.++|+..|++...-|+ .........+.+.|+.++...+...+.... .-+...|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 56677777788888888888888888876554332 223333445667788888777777765432 12233333333
Q ss_pred HHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChH
Q 046956 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGR 414 (574)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~ 414 (574)
.......+++.|..+-++.++.+..... .+-.-+.++...|+.++|.-.|.... . -+..+|..++.+|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~--alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHE--ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccch--HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 3444566777777777777766554443 45566777888899999999998766 3 46789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHH
Q 046956 415 QAVSLFDRMLSEGLTPDEVAFTIVL-TACS-HVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 491 (574)
+|..+-+..... +..+..+...+. ..|. ...--++|..++++..+ ..|+ ....+.+...+...|..+++++++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 999888876653 344555665553 3332 33445788888888774 4555 466777888999999999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 492 NSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 492 ~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
++. ...||....+.+...+...+.+++|+..|..+++++|++.....-|-.+
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 887 6778999999999999999999999999999999999988777666443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-09 Score=94.65 Aligned_cols=416 Identities=12% Similarity=0.121 Sum_probs=268.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHh
Q 046956 71 LVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147 (574)
Q Consensus 71 ~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 147 (574)
..+..++.++.+.|+.++|...+..+. .++...|--+.-.+.--|.+.+|..+-.+..+ ++.....++...-
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlah 132 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHH
Confidence 444455588889999999999998774 46666777777777777888888887665432 3333445555566
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHHH-HHHHHhcCChHHHHHH
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAM-IVGYASVGDLVEAKTV 224 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~~~ 224 (574)
+.++-++-..+++.+.+. ..-..+|.++.--.-.+.+|++++.++.. |+-...|.. .-+|.+..-++-+.++
T Consensus 133 klndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 788888777777776542 23344566665556678999999999886 444455543 4567778878777777
Q ss_pred HhhcCC--CC-cchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhc-----CChHHHHHHHhhCCCCCHh
Q 046956 225 FDLMPE--RS-NVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKV-----GDMTSARSLFEAAPDRDVV 296 (574)
Q Consensus 225 ~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~ 296 (574)
+.--.+ || +...|..+....+.-.-..|++-..++ ..|...-...+.-.++. .+-+.|++++..+.+.=+.
T Consensus 208 l~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l-adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE 286 (557)
T KOG3785|consen 208 LKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL-ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE 286 (557)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH-HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence 765543 33 333444333333322222222222222 11111111223333332 2446777777666655555
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCCcchHHHHHHHHHHhCCCCChhhHHHH
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSA-----CSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (574)
+...|+--|.+.+++.+|..+.+++.. ..|-......+..+ .........|.+.|+.+-.++...++..-...
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 666777788999999999999888742 34444444443332 22223355677788877777776665545667
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCc
Q 046956 372 LVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFT-IVLTACSHVGL 447 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~ 447 (574)
+...+.-..++++++..++.+.. .|-..--.+..+++..|++.+|.++|-+.....+ .|..+|. .|.++|.+.+.
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCC
Confidence 78888888899999998888773 2333333468889999999999999987654333 3445554 56678899999
Q ss_pred HHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWG 504 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 504 (574)
++.|+.++-++.. +.+. .....+...+.+++.+=-|.+.|+.+ ..+|++..|.
T Consensus 444 P~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred chHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 9999888765532 2333 33445567888999988888888887 4678887774
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-08 Score=88.18 Aligned_cols=384 Identities=13% Similarity=0.041 Sum_probs=246.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHccCCC-CChhhHHHHHHHHHhcC-ChHHHHHHHhhcCCCCcchHHHHHHHHHccC--C
Q 046956 173 VGTSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVG-DLVEAKTVFDLMPERSNVSWNALIGGLVKIG--D 248 (574)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 248 (574)
.-...+.+|...++-+.|.....+.+. .....-+.++.-+.+.| +-.++.--+......-+..... |.+..+.+ .
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i~~ll~l~v~g 177 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-IEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH-HHHHHHHhhcc
Confidence 334456667777777888887777765 23333444444444333 2222222222221111111111 11111111 1
Q ss_pred hHHHHHHHhcCC-CCchhHHHHHHHHHH--hcCChHHHHHHHhhC-----CCCCHhHHHHHHHHHHhCCCchHHHHHHHH
Q 046956 249 LRSARQLFDEMP-ERNVVSYTTMIDGYA--KVGDMTSARSLFEAA-----PDRDVVAWSALISGYAQNGQPDEAVKIFSD 320 (574)
Q Consensus 249 ~~~a~~~~~~~~-~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 320 (574)
.+.+--....+. .++......-+.+++ ..++...|...+-.+ ...|+.....+...+...|+.++|...|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 111111111111 222233333344333 344444444444322 235788899999999999999999999999
Q ss_pred HHHCCCCCCHHH-HHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CC
Q 046956 321 MCSKNVQPDEFI-LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RD 396 (574)
Q Consensus 321 m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 396 (574)
.... .|+..+ .....-.+...|+.+....+...+......... -+..-+......+++..|..+-++..+ .+
T Consensus 258 ~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~--~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~ 333 (564)
T KOG1174|consen 258 TLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS--HWFVHAQLLYDEKKFERALNFVEKCIDSEPRN 333 (564)
T ss_pred HhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh--hhhhhhhhhhhhhhHHHHHHHHHHHhccCccc
Confidence 8754 443322 222223345677777777776666543311111 233334445567889999999988775 34
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
+..+-.-...+...|++++|.-.|+..+. +.|. ...|..|+.+|...|.+.+|...-+...+ .++.+..+...+.
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFG 409 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhhhhc
Confidence 45555556778899999999999999887 5664 46999999999999999999998888876 5666777766653
Q ss_pred -HHHh-hcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 476 -DLLG-RTGHLKSAYELLNSM-PVEPHAS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 476 -~~~~-~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
..+. ....-++|.+++++. ..+|+.. ..+.+...|...|.++.++.++++.+...|+ ......|++++...+.++
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHH
Confidence 3333 334568899999887 7788754 5566668899999999999999999998888 778999999999999999
Q ss_pred HHHHHHHHHHhCCCc
Q 046956 552 DVCLVRSKMKERGLR 566 (574)
Q Consensus 552 ~a~~~~~~~~~~~~~ 566 (574)
+|...|......+++
T Consensus 489 ~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999988876654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-09 Score=99.33 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=108.8
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHH
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 374 (574)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------
Confidence 3456666666666777777777766665542 22233344444444444444444444444443322
Q ss_pred HhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 046956 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWR 453 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~ 453 (574)
.+...+..+...+...|++++|...+++.......+ ....+..+..++...|++++|..
T Consensus 97 --------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 97 --------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred --------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 223344555555556666666666666655432112 22344555556666666666666
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.+++..+ ..+.+...+..+...+...|++++|...+++. ...| +...+..+...+...|+.++|..+.+.+.+..
T Consensus 157 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 157 YLTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6666665 22334455666666666667777666666655 2222 33444445556666677777776666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-10 Score=105.55 Aligned_cols=233 Identities=11% Similarity=0.018 Sum_probs=145.6
Q ss_pred hCCCchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHH
Q 046956 307 QNGQPDEAVKIFSDMCSKN-VQPD--EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383 (574)
Q Consensus 307 ~~~~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 383 (574)
..++.+.++.-+.+++... ..|+ ...|......+...|+.+.|...+....+..+.. ...++.++..+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM--ADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCCHH
Confidence 3456677788887777542 2222 3456666677778888888888888887765443 336888888888888888
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 384 RAAELFETMPN--R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 384 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+|...|+...+ | +...|..+..++...|++++|++.+++..+. .|+..........+...++.++|...+++...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888887753 3 4567777777788888888888888888773 45443222222223456778888888866554
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCH--HHHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHL--KSAYELLNSM-PV----EP-HASAWGALLGACKLYSDIELGELVANRLFELEP- 531 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p- 531 (574)
...|+...+ .+... ..|+. +++.+.+.+. .. .| ....|..+...+...|++++|+..|+++++.+|
T Consensus 194 --~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 --KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred --hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 333332221 22222 23443 3333333322 11 11 234677777888888888888888888888875
Q ss_pred CCchhHHHHHHHHHhcC
Q 046956 532 QNAGSYVLLSNIYATAD 548 (574)
Q Consensus 532 ~~~~~~~~l~~~~~~~g 548 (574)
+.+.....+.+.....+
T Consensus 269 ~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 269 NFVEHRYALLELALLGQ 285 (296)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 55555555655544433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.9e-11 Score=102.34 Aligned_cols=236 Identities=14% Similarity=0.106 Sum_probs=185.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHh
Q 046956 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378 (574)
Q Consensus 299 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 378 (574)
+.+.++|.+.|.+.+|.+.|+.-++. .|-..||..+-..|.+..+++.|..++...++.-+.. ......+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~--VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD--VTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch--hhhhhhhHHHHHH
Confidence 45677788888888888877777665 4556677777777888788888877777766543222 2145567778888
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 379 CGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
.++.++|.++|+...+ .++.....+...|...++++-|+.+|+++.+.| .-++..|..+.-+|...+++|-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8889999999988774 355666667778888999999999999999998 456778888888999999999999999
Q ss_pred HHhHhhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 456 EAMQNVYAIVPS--PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 456 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
+++... .-.|+ ..+|..+.......|++.-|.+.|+-. ..+| +...++.+.-.-.+.|++++|..++..+....|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 998875 44455 477888999999999999999999887 3334 567888888888899999999999999999999
Q ss_pred CCchhHHHH
Q 046956 532 QNAGSYVLL 540 (574)
Q Consensus 532 ~~~~~~~~l 540 (574)
+-.+...++
T Consensus 461 ~m~E~~~Nl 469 (478)
T KOG1129|consen 461 DMAEVTTNL 469 (478)
T ss_pred cccccccce
Confidence 865554444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-10 Score=113.29 Aligned_cols=209 Identities=11% Similarity=-0.044 Sum_probs=163.7
Q ss_pred CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHh---------cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC
Q 046956 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK---------CGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGH 412 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 412 (574)
+.++|...+++..+..+.... .+..+..+|.. .+++++|...+++..+ .+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~--a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIA--PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHH--HHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 457888889988876655433 56666655542 3458899999998874 366788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHH
Q 046956 413 GRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 413 ~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
+++|...|+++.+. .|+ ...+..+...+...|++++|...++++.+. .|+ ...+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999994 565 457888888999999999999999999863 343 33344455567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 491 LNSM--PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 491 ~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
++++ ...|+ ...+..+..++...|++++|...++++....|.+......++..|...| ++|...++++.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9887 22354 4445666688889999999999999998888998889999999888888 488887877665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-12 Score=80.88 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=43.3
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhc
Q 046956 99 PNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148 (574)
Q Consensus 99 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 148 (574)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-09 Score=96.48 Aligned_cols=212 Identities=17% Similarity=0.037 Sum_probs=142.9
Q ss_pred CcchHHHHHHHHHHhCC-CC-ChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 046956 345 NLDLSNWVDSYLSRSHM-DL-SRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSL 419 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 419 (574)
..+.++.-+..++.... .+ .....+..++..|.+.|+.++|...|++..+ .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555554322 11 1123677888888899999999988887763 3567888888899999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 046956 420 FDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PV 496 (574)
Q Consensus 420 ~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 496 (574)
|++.++ +.|+. .++..+..++...|++++|.+.+++..+. .|+..........+...++.++|.+.|++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999887 45654 57777888888889999999999888863 333222222223345667889998888654 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 497 EPHASAWGALLGACKLYSDIELGELVANRLF-------ELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 497 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.|+...+ .......|+...+ ..++.+. ++.|+.+.+|..++.++...|++++|...|++..+.++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332222 1222334544333 2333333 45667778899999999999999999999998887665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-07 Score=91.29 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCc
Q 046956 473 CMVDLLGRTGHLKSAYELLNSM-PVEPHAS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (574)
.++..+-+.|+++.|..+++.+ .-.|+.. .|..-.+.+...|++++|...++++.+++-.|..+-..-+.-..++++.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 3555666677777777777666 3344432 2223335666667777777777777776655555555566666667777
Q ss_pred hHHHHHHHHHHhCCC
Q 046956 551 LDVCLVRSKMKERGL 565 (574)
Q Consensus 551 ~~a~~~~~~~~~~~~ 565 (574)
++|.++.....+.|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 777777766666553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-11 Score=77.31 Aligned_cols=50 Identities=30% Similarity=0.595 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 395 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-08 Score=95.16 Aligned_cols=127 Identities=14% Similarity=0.168 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCC---CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDR---DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
++..+...|-..|++++|++.+++..+. .+..|..-...+-+.|++.+|.+.++...... .-|...-+.....+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 3344556666677777777777765542 24556666666777777777777777766553 2244444455556666
Q ss_pred cCCcchHHHHHHHHHHhCCCCChh-------hHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRA-------HVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
.|++++|..++....+.+..+... ......+.+|.+.|++..|.+.|..+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 677777766666665555322211 011334556666666666665554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-08 Score=93.92 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVD 476 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 476 (574)
.|......+...++.++|...+.+.... .|- ...|......+...|...+|.+.|..... +.| ++....+++.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 5666777888899999999888888773 444 44777777788889999999999998884 444 4688899999
Q ss_pred HHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 477 LLGRTGHLKSAYE--LLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 477 ~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
++.+.|+..-|.+ ++..+ ..+| +...|..+...+.+.|+.++|...|..++++.+.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998877777 77777 6666 5788999999999999999999999999999877664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-09 Score=101.97 Aligned_cols=234 Identities=15% Similarity=0.170 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCC----------CHh-HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDR----------DVV-AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 334 (574)
+...+...|...|+++.|+.+++...+. .+. ..+.+...|...+++++|..+|+++...-.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e-------- 272 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE-------- 272 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH--------
Confidence 4455677777777777777776554321 111 223345555666666666666666543200
Q ss_pred HHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----------CCh-hHHHHH
Q 046956 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN----------RDV-VSYCSM 403 (574)
Q Consensus 335 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~l 403 (574)
.. .-...+....+++.|..+|.+.|++++|...++...+ +.+ ..++.+
T Consensus 273 ---~~------------------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 273 ---EV------------------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred ---Hh------------------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 00 0011122222455556666666666666555554431 222 235566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CC--CCc-HHH
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSE---GLTPDE----VAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AI--VPS-PEH 470 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~---g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~--~p~-~~~ 470 (574)
+..+...+++++|..++++..+. -+.++. .+++.|...|.+.|++++|.+++++++... +. .+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 67777888888888888765532 122222 378889999999999999999999887642 11 122 356
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM--------PVEPH-ASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
++.+...|.+.+++++|.++|.+. +..|+ ..++..|...|...|+++.|+++.+.++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 778888899999998888888765 23454 34788888999999999999999998875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-07 Score=85.81 Aligned_cols=181 Identities=12% Similarity=0.118 Sum_probs=107.2
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChH
Q 046956 109 KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEIS 188 (574)
Q Consensus 109 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 188 (574)
-.+...|+-++|......-....+. +.+.|..+.-.+....++++|.+.+..+...+ +.|...+.-|.-.-++.|+++
T Consensus 49 L~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 49 LTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred chhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence 3445677778887777766665443 56677777666667778888888888877765 445566666655556667776
Q ss_pred HHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCC-----CCcchHHH------HHHHHHccCChHHHHH
Q 046956 189 CARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE-----RSNVSWNA------LIGGLVKIGDLRSARQ 254 (574)
Q Consensus 189 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~------l~~~~~~~~~~~~a~~ 254 (574)
.....-....+ .....|..++.++.-.|+...|..+++...+ ++...+.. -.......|..++|.+
T Consensus 127 ~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 127 GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 66665555544 2345677777777777888877777766543 22222211 1223344555566655
Q ss_pred HHhcCCCCch----hHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 046956 255 LFDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFEAAPD 292 (574)
Q Consensus 255 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 292 (574)
.+... ++.. ..-..-...+.+.+++++|..++..+..
T Consensus 207 ~L~~~-e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 207 HLLDN-EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHhh-hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 55543 2221 1222334455555666666666655544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-08 Score=84.81 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=88.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~ 443 (574)
++..+...|.+.|+.+.|.+.|++..+ .+-.+.|....-+|.+|++++|...|++....-.-+.. .+|..+.-+..
T Consensus 71 a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 71 AHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 344444455555555555555554432 23344555555555666666666666665553222222 35555555555
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
+.|+.+.|...|++..+ ..+-.+.....+.+...+.|++-.|..+++.. ...+...++...+..-...||-+.+.+
T Consensus 151 ~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 151 KAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred hcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence 66666666666666654 23333445555566666666666666666555 223445555444555556666666666
Q ss_pred HHHHHHhhCCCCch
Q 046956 522 VANRLFELEPQNAG 535 (574)
Q Consensus 522 ~~~~~~~~~p~~~~ 535 (574)
.=.++.+..|.+..
T Consensus 229 Y~~qL~r~fP~s~e 242 (250)
T COG3063 229 YQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhCCCcHH
Confidence 55555555665544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-07 Score=86.63 Aligned_cols=414 Identities=10% Similarity=0.037 Sum_probs=250.4
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCCh--hhHHHHHHHHHhcCChHH
Q 046956 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNV--VSWTAMIVGYASVGDLVE 220 (574)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 220 (574)
++.+...|++++|.+....++..+ +.|...+..-+-+..+.+++++|+.+.+.-..... +-+-.=+.+..+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 455667889999999999998876 55666777777788899999999977765432111 111112334457899999
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHH-hcCChHHHHHHHhhCCCC---CHh
Q 046956 221 AKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYA-KVGDMTSARSLFEAAPDR---DVV 296 (574)
Q Consensus 221 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---~~~ 296 (574)
|+..++...+.+..+...-...+.+.|++++|..+|+.+.+.+...+...+.+-+ ..+-.-.+. +.+..... +-.
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYE 176 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHH
Confidence 9999996666676677777888999999999999999775544444433332211 111111121 23333332 233
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCC-------CCC------CH-HHHHHHHHHHhccCCcchHHHHHHHHHHhCCC
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCSKN-------VQP------DE-FILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~-------~~p------~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (574)
.+......+...|++.+|+++++...+.+ -.- +. ..-..+...+-..|+.++|..++..+++.+..
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 33344566788999999999999883221 111 11 12233455667789999999999988877654
Q ss_pred CCh--hhHHHHHHHHhHhcCCHH-HHHHHHhhCCC---------------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046956 363 LSR--AHVIAALVDMNAKCGNMD-RAAELFETMPN---------------RDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424 (574)
Q Consensus 363 ~~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 424 (574)
-.+ ....|.|+.+-....-++ .+...++.... ..+..-+.++..|. +..+.+.++.....
T Consensus 257 D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP 334 (652)
T ss_pred CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC
Confidence 332 112233332221111111 12222222111 11111222333333 23334443333321
Q ss_pred HCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHH--------h
Q 046956 425 SEGLTPDEVAFTIVLTACS--HVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYELLN--------S 493 (574)
Q Consensus 425 ~~g~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~ 493 (574)
. ..|.. .+..++..+. +...+..+..++....+ +.+-+ ..+....+......|+++.|.+++. .
T Consensus 335 ~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 335 G--MSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred c--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 1 23333 3444444332 23357778888888776 44433 5666778888999999999999998 3
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 494 M-PVEPHASAWGALLGACKLYSDIELGELVANRLFEL----EPQ---NAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 494 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+ ...-.+.+...+...+.+.++.+.|..++..++.- .+. --..+..++..-.+.|+-++|..+++++.+.+.
T Consensus 410 ~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 410 ILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred hhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 3 23344566677777788888888888888888763 222 223455566667788999999999999987543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-07 Score=91.38 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=47.8
Q ss_pred hccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 046956 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
.....|.+|+.+++.+........ .|..+.+-|+..|+++.|+++|.+.. .++-.|..|.+.|++++|.++-
T Consensus 743 i~akew~kai~ildniqdqk~~s~---yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASG---YYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccc---cchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 344445555555555544332222 34455555555555555555554432 2334445555555555555544
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 421 DRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 421 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
.+.. |.......|..-..-+...|++.+|.++|
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 3322 12222233433333444445555554444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-07 Score=88.37 Aligned_cols=239 Identities=11% Similarity=0.057 Sum_probs=153.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChh-----hHHHHH
Q 046956 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA-----HVIAAL 372 (574)
Q Consensus 298 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l 372 (574)
...+..+..+..++..|++-+....+.. -+..-++....++...|.............+.|...... ..+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456666666777777777777776653 233334444445666666666655555555444332211 123334
Q ss_pred HHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHH
Q 046956 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a 451 (574)
..+|.+.++++.|+..|.+...+... -....+....+++........- +.|... -...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 55677778888888888875521110 1122233445566665555444 344432 223336677888999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+..|.+++. ..+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..-..++....+++.|.+.|+++++.
T Consensus 378 v~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999887 44666788888999999999999888877666 44554 334544556667777899999999999999
Q ss_pred CCCCchhHHHHHHHHHhc
Q 046956 530 EPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~ 547 (574)
+|++..+...+.+++...
T Consensus 456 dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 999888888888776653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.1e-08 Score=97.15 Aligned_cols=502 Identities=13% Similarity=0.065 Sum_probs=258.7
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 046956 54 HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130 (574)
Q Consensus 54 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 130 (574)
..++..+...-+.++-...-..++++|..-.+...|.+.|+... ..+..++......|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 44566666656655544444444478877778888999998875 456678888999999999999999884333222
Q ss_pred CC-CCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhh-HHH-
Q 046956 131 EA-VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVS-WTA- 207 (574)
Q Consensus 131 ~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~- 207 (574)
.. ..-...|...--.+...++...+..-|+...+.. +-|...|..|+.+|.++|++..|.++|.+...-++.. |..
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 11 0011222223334567788888888888887765 4577889999999999999999999998877633332 222
Q ss_pred -HHHHHHhcCChHHHHHHHhhcCCC----------CcchHHHHHHHHHccCChHHHHHHHhc-----------CCCCchh
Q 046956 208 -MIVGYASVGDLVEAKTVFDLMPER----------SNVSWNALIGGLVKIGDLRSARQLFDE-----------MPERNVV 265 (574)
Q Consensus 208 -li~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~-----------~~~~~~~ 265 (574)
.....+..|.+.+|+..+...... -..++..+...+...|-..++..+++. ....+..
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 223445678888888887766421 111222222222222222222222220 0001111
Q ss_pred HHHHHHHH-------------------HH----hcCCh---H---HHHHHHhhCCC--CCHhHHHHHHHHHHh----C--
Q 046956 266 SYTTMIDG-------------------YA----KVGDM---T---SARSLFEAAPD--RDVVAWSALISGYAQ----N-- 308 (574)
Q Consensus 266 ~~~~l~~~-------------------~~----~~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~----~-- 308 (574)
.|-.+.++ +. ..+.. + -+.+.+-.-.+ .+..+|..++..|.+ .
T Consensus 715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 11111111 11 11111 0 00000000000 122344444444333 1
Q ss_pred --CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHH
Q 046956 309 --GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386 (574)
Q Consensus 309 --~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (574)
.+...|+..+.+..+.. .-+..+|+.+ ......|++.-+..-|-+.....+... ..|..+...+.+..+++.|.
T Consensus 795 t~~~~~~Ai~c~KkaV~L~-ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~--~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLC-ANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCH--CQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred cchhHHHHHHHHHHHHHHh-hccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccch--hheeccceeEEecccHHHhh
Confidence 11224555555554431 1223333333 233444444444433333332222221 24555555555555555555
Q ss_pred HHHhhCCC------------------------------------------CChhHHHHHHHHHHHcCChHHHHHHHHH--
Q 046956 387 ELFETMPN------------------------------------------RDVVSYCSMIKGLSIHGHGRQAVSLFDR-- 422 (574)
Q Consensus 387 ~~~~~~~~------------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~-- 422 (574)
..|..... ++..-|-.........|+.++-+...++
T Consensus 871 ~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 871 PAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 55554442 1111222222223344444433332222
Q ss_pred --------HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHH----HHHHHHhhcCCHHHHHHH
Q 046956 423 --------MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA----CMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 423 --------m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~ 490 (574)
... |.+.+...|........+.+.+..|.+...+....-...-+...|+ .+.+.+...|.++.|..-
T Consensus 951 sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 951 SASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 222 2223345666666666667777776666655442211122333444 455667778888888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 491 LNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 491 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+.......+......-+.. .-.|+++++.+.|++++.+-.++ ......++......+.-+.|...+=+.+.
T Consensus 1030 ~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 7665433333333333322 44678999999999999874332 34555666667777787888776655543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-07 Score=88.38 Aligned_cols=428 Identities=12% Similarity=0.097 Sum_probs=224.7
Q ss_pred CCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHH
Q 046956 83 ATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAV 162 (574)
Q Consensus 83 ~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 162 (574)
..++.+|+.+|-+- | .-...|..|..-.+|++++.+-+. .|.+.-...-.+.+.++...|.-+.|-++-.
T Consensus 544 ~kkfk~ae~ifleq---n--~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk~-- 613 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLEQ---N--ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELKE-- 613 (1636)
T ss_pred HhhhhHHHHHHHhc---c--cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhcc--
Confidence 34567777777432 1 122346666777778888877543 2222111222334555556666555544321
Q ss_pred HHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCC--CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHH
Q 046956 163 IRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMP--ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI 240 (574)
Q Consensus 163 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 240 (574)
.+- --.+.|..|.+.|....|.+....=. -.|......+..++.+..-+++|-.+|+++..++. .+
T Consensus 614 ------sdg-d~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----al 681 (1636)
T KOG3616|consen 614 ------SDG-DGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----AL 681 (1636)
T ss_pred ------ccC-ccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HH
Confidence 111 12356778888888877766543222 24555556666666666666666666666654432 12
Q ss_pred HHHHccCChHHHHHHHhcCCCC-------------------ch--------hHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 046956 241 GGLVKIGDLRSARQLFDEMPER-------------------NV--------VSYTTMIDGYAKVGDMTSARSLFEAAPDR 293 (574)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~-------------------~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 293 (574)
..+.+-.-+.+|.++-.-.-+. |. ....--+.+.....++.+|+.+++.+.+.
T Consensus 682 e~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 2222222233333333200000 00 01111233344455666666666666554
Q ss_pred CHh--HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHH
Q 046956 294 DVV--AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371 (574)
Q Consensus 294 ~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (574)
++. -|..+...|...|+++.|.++|-+.- .+.-.+..|.+.|+|+.|.++-.+.. |+..... .|-.
T Consensus 762 k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~-~yia 829 (1636)
T KOG3616|consen 762 KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATIS-LYIA 829 (1636)
T ss_pred ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHH-HHHH
Confidence 432 24555566666666666666665431 22334555666666666655543332 2222222 4555
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHH
Q 046956 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLVE 449 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~ 449 (574)
-..-.-+.|++.+|+++|-.+..|+. .|..|-++|..+..+++..+- .|+. .|...+..-+...|+..
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lk 899 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLK 899 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChh
Confidence 55555666666667666666666653 355666667766666665542 3332 36666667777778888
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHH------HHHHHHhcCCHHHH
Q 046956 450 DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP----HASAWGA------LLGACKLYSDIELG 519 (574)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~------l~~~~~~~~~~~~a 519 (574)
.|...|-+... |.+-++.|...+.|++|-++-+.-+... -...|.. ....+-++|..+.+
T Consensus 900 aae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~ 969 (1636)
T KOG3616|consen 900 AAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAA 969 (1636)
T ss_pred HHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHH
Confidence 87776655432 4445566667777777777665542110 0111111 11223344444444
Q ss_pred HHHH------HHHHh-----hCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 520 ELVA------NRLFE-----LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 520 ~~~~------~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+... +-+++ .....+.....++..+...|++++|.+.+-+.++-+
T Consensus 970 id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 970 IDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 4321 11221 123446677778888888899998887777666544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-07 Score=93.01 Aligned_cols=283 Identities=13% Similarity=0.080 Sum_probs=151.5
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-c-----
Q 046956 272 DGYAKVGDMTSARSLFEAAPD--RD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS-Q----- 342 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~----- 342 (574)
..+...|++++|++.++.... .| ..........+.+.|+.++|..+|..+++. .|+...|...+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 344556666666666655433 12 333445556666666666676666666665 344444444333332 1
Q ss_pred cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHH-HHHHHHhhCCCCCh-hHHHHHHHHHHHcCChHHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD-RAAELFETMPNRDV-VSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
..+.+....+++.+...-+.... ...+.-.+.....+. .+..++......++ .+|+.+-..|......+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~---~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDA---PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccc---hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 11234445555555443322221 111111111111121 22233333333333 34444444444333333334444
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH
Q 046956 421 DRMLSE----G----------LTPDE--VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484 (574)
Q Consensus 421 ~~m~~~----g----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 484 (574)
...... | -+|+. .++..+...|...|++++|++++++++. .-+-.++.|..-++.|-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCH
Confidence 443321 1 12333 2445566677788888888888888875 3333367777778888888888
Q ss_pred HHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC-------chhHHHHHHHHHhcCCchHH
Q 046956 485 KSAYELLNSM-PVEPHASAW-GALLGACKLYSDIELGELVANRLFELE--PQN-------AGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 485 ~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a 553 (574)
++|.+.++.+ ..++...-. +.....+.+.|++++|.+.+....+.+ |.. .+.....+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8888888777 334433333 334466778888888888877765543 221 22334567778888888888
Q ss_pred HHHHHHHH
Q 046956 554 CLVRSKMK 561 (574)
Q Consensus 554 ~~~~~~~~ 561 (574)
++.|..+.
T Consensus 325 Lk~~~~v~ 332 (517)
T PF12569_consen 325 LKRFHAVL 332 (517)
T ss_pred HHHHHHHH
Confidence 77765543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-06 Score=85.29 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=186.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhcCC-CCcc-----hHH---------------------------HHHHHHHcc
Q 046956 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPE-RSNV-----SWN---------------------------ALIGGLVKI 246 (574)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~-----~~~---------------------------~l~~~~~~~ 246 (574)
.|+...+.-+.++...+-+.+-+++++++.- +++. .-+ .+...+...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 4556666667777777777777777777642 1111 111 122334445
Q ss_pred CChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046956 247 GDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV 326 (574)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 326 (574)
+-+++|..+|+.. +.+....+.|+. ..+.++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf-~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hHHHHHHHHHHHh-cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 5567777777766 555555555554 34566777776666654 457889999999999999998877543
Q ss_pred CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 046956 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKG 406 (574)
Q Consensus 327 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 406 (574)
-|+..|..++..+.+.|.+++-.+++..+.+...++. +-..|+-+|++.+++.+.++++. .||......+.+-
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~---id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY---IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDR 1203 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHH
Confidence 3677899999999999999999999988888776665 45678999999999888777653 4555556666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
|...|.++.|.-+|... ..|..|...+...|++..|...-+++- +..+|..+..+|...+.+.-
T Consensus 1204 cf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred HhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHhchhhhhH
Confidence 66667777666655432 234455555555555555554433321 23444444444444433322
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
|.-. .+.+-.....+..++..|...|-+++-+.+++..+.+.......+..|+-+|.
T Consensus 1268 AQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1268 AQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 2100 00011122334444445555555555555555555444444444444444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-08 Score=94.25 Aligned_cols=218 Identities=13% Similarity=0.075 Sum_probs=154.5
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCCh---h-------HHHH
Q 046956 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDV---V-------SYCS 402 (574)
Q Consensus 333 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-------~~~~ 402 (574)
...+..+..+..+++.+.+-+....... .+.. .++....+|...|.+.++...-+...+... . .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it-~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDIT-YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhH-HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666677777888888888877766 2333 677778888888888777766655443211 1 1222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHhhc
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLGRT 481 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 481 (574)
+..+|.+.++++.++..|.+.......|+.. .+....+++....+... -+.|.. .-...-...+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhc
Confidence 3446666778888888888876644444332 22233344444433332 233432 1222336778899
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 482 GHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
|++..|++.+.++ ...| |...|....-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.|++
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 4456 5678888889999999999999999999999999999999999999999999999999998
Q ss_pred HHhCCC
Q 046956 560 MKERGL 565 (574)
Q Consensus 560 ~~~~~~ 565 (574)
..+.+.
T Consensus 452 ale~dp 457 (539)
T KOG0548|consen 452 ALELDP 457 (539)
T ss_pred HHhcCc
Confidence 877653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-07 Score=82.36 Aligned_cols=407 Identities=13% Similarity=0.098 Sum_probs=222.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHHH-HHHHHhc
Q 046956 139 FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAM-IVGYASV 215 (574)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~ 215 (574)
+.+++..+.+-.++..|++++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|... ...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444445555555555555544443 11333444455555555555555555555543 333333222 3445556
Q ss_pred CChHHHHHHHhhcCCCCc-c--hHHHHHHHHHccCChHHHHHHHhcCC-CCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 046956 216 GDLVEAKTVFDLMPERSN-V--SWNALIGGLVKIGDLRSARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291 (574)
Q Consensus 216 g~~~~a~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 291 (574)
+.+..|+++...|...+. . ....-.....+.+++..+..+.+... +.+..+.+.......+.|+++.|.+-|....
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 666666666666655311 1 01111112234667777777777664 3556666666667778888888888888766
Q ss_pred C----CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhh
Q 046956 292 D----RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367 (574)
Q Consensus 292 ~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 367 (574)
+ ....+|+.- -+..+.|+++.|++...++.+.|++-.+..-..+..--.....+..-..+..... ..
T Consensus 172 qvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal--------~e 242 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL--------VE 242 (459)
T ss_pred hhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH--------HH
Confidence 5 345566644 4556678899999999999888764321110000000000000000011111110 01
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTA 441 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 441 (574)
.++.-...+.+.|+++.|.+.+-.|.. -|++|...+.-.- ..+++.+..+-+.-+.+. .| ...||..++-.
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLll 319 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLL 319 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 455556677889999999999999983 4677766554332 234555555555555554 44 34699999999
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH-hhcCCHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCC---
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL-GRTGHLKSAYELLNSMPVEPHASAWGALL--GACKLYSD--- 515 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~p~~~~~~~l~--~~~~~~~~--- 515 (574)
|++..-++.|-.++.+-....-.-.+...|+. ++++ ...-..++|.+-++.+........-...+ ..-...++
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a 398 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEA 398 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 99999888888887653321001123344443 3444 34557788877766652110011111111 11111222
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
...+++-|++.+++. ..+....++.|....++..+.++|..-.+
T Consensus 399 ~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 399 IRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 233445555655543 12456678889999999999999987654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.8e-07 Score=86.93 Aligned_cols=319 Identities=14% Similarity=0.097 Sum_probs=197.5
Q ss_pred chhHHHHHH-HHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCC---------CCCCcc
Q 046956 68 DHSLVAHFI-SLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREE---------AVPDKY 137 (574)
Q Consensus 68 ~~~~~~~ll-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---------~~~~~~ 137 (574)
|+.+--+++ -++|..-|+.+.|.+..+-+. +-..|..|.+.+.+.++.+-|.-.+-.|.... ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 455555555 134667789998888776654 34569999999999998888877666654321 1222 2
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC-CChhhHHHHHHHHHhcC
Q 046956 138 TFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVG 216 (574)
Q Consensus 138 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g 216 (574)
+=..+.-.....|.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-.. .-..||.....-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2222333345779999999999987764 3455677888999999988765433 22346777777777889
Q ss_pred ChHHHHHHHhhcCCC-----------------------CcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHH
Q 046956 217 DLVEAKTVFDLMPER-----------------------SNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDG 273 (574)
Q Consensus 217 ~~~~a~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 273 (574)
+.+.|++.|++...+ |...|.-...-+-..|+.+.|+.+|... .-|..+++.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI 947 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRI 947 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheee
Confidence 999999999876432 4444444555555666666666666543 234555666
Q ss_pred HHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----------
Q 046956 274 YAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ----------- 342 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----------- 342 (574)
.|-.|+.++|-++-++-. |..+...+.+.|-..|++.+|...|.+... |...|+.|-.
T Consensus 948 ~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred EeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHH
Confidence 666666666666655433 556666788888888888888888876642 2222322211
Q ss_pred --cC--CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--------------CCChhHHHHHH
Q 046956 343 --VG--NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--------------NRDVVSYCSMI 404 (574)
Q Consensus 343 --~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~li 404 (574)
.| +.-.|.++|+.. |. -...-+..|.+.|.+.+|+++--+-. ..|+...+.-.
T Consensus 1017 l~s~~~d~v~aArYyEe~---g~------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEEL---GG------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred hhcCchhHHHHHHHHHHc---ch------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 11 112222333322 11 12334556777787777776532222 13556666666
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRM 423 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m 423 (574)
.-++.+.++++|..++-..
T Consensus 1088 dFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 6667777777777666543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-07 Score=82.90 Aligned_cols=186 Identities=14% Similarity=0.124 Sum_probs=90.9
Q ss_pred HHHHHHHccCChHHHHHHHhcCCCCchhHHHHHH---HHHHhcCChHHHHHHHhhCCC--CCHh-HHHHHHHHHHhCCCc
Q 046956 238 ALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMI---DGYAKVGDMTSARSLFEAAPD--RDVV-AWSALISGYAQNGQP 311 (574)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~ 311 (574)
-+...+...|++..|+.-|....+.|+..|.++. ..|...|+-..|+.-++++.+ ||-. +...-...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 4556666677777777777644455555555543 456666666666666666554 3321 122233456677777
Q ss_pred hHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhH
Q 046956 312 DEAVKIFSDMCSKNVQPDE--------------FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~~p~~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (574)
++|..-|+..++.....+. ......+..+...|+...++.....+++..+ ++.. .+..-..+|.
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~-l~~~Rakc~i 200 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDAS-LRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhH-HHHHHHHHHH
Confidence 7777777777665321100 0111122223334444444444444444321 1111 4444445555
Q ss_pred hcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 378 KCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 378 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
..|++..|+.-++... ..+.....-+-..+...|+.+.++...++-++
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555544333322 23333444444444444555555544444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-09 Score=98.72 Aligned_cols=214 Identities=13% Similarity=0.109 Sum_probs=155.2
Q ss_pred ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 046956 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVS 418 (574)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 418 (574)
+.|++.+|.-.|+..++.++. ....+..|+......++-..|+..+.+..+ .|....-.|.-+|...|.-.+|+.
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 445555555555555554332 223566666666666766677777766653 244566666677777777778888
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 419 LFDRMLSEGLTPDEVAFTIVL-----------TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 419 ~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
.+++-+... |... .+. ..+..........++|-++....+..+|+.++..|.-.|.-.|.+++|
T Consensus 375 ~L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 887765532 1110 000 122223334455566666665446668899999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 488 YELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 488 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
++.|+.+ .++| |...|+.+...+....+.++|+..|.+++++.|....+.+.|+-.|...|.|++|.+.|=..+.
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999988 6777 5778999999999999999999999999999999999999999999999999999998876653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-08 Score=90.46 Aligned_cols=250 Identities=15% Similarity=0.086 Sum_probs=143.6
Q ss_pred HHhcCChHHHHHHHhhCCC--C--CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchH
Q 046956 274 YAKVGDMTSARSLFEAAPD--R--DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS 349 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 349 (574)
+.-.|++..++.-.+ ... + +......+.+++...|+++.++ .+..... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666664443 111 1 2334445566677777665443 3333222 55555554444444433333333
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046956 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT 429 (574)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 429 (574)
..-++.............+....+.++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 3333322222222222213333445666778888888888765 45666677788888888888888888888873 3
Q ss_pred CCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 046956 430 PDEVAFTIVLTACSH----VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAW 503 (574)
Q Consensus 430 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 503 (574)
.| .+...+..++.. .+.+.+|..+|+++.+ .+.+++.+.+.++.+....|++++|.+++++. ...| ++.++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 34 334444444322 2357888888888776 56677788888888888888888888888775 3344 35556
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhhCCCCch
Q 046956 504 GALLGACKLYSDI-ELGELVANRLFELEPQNAG 535 (574)
Q Consensus 504 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~ 535 (574)
..++......|+. +.+.+.+.++...+|+.+.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 6666666666766 5667777777777887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-06 Score=84.76 Aligned_cols=297 Identities=11% Similarity=-0.023 Sum_probs=180.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CC---HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 264 VVSYTTMIDGYAKVGDMTSARSLFEAAPD---RD---VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
...+..+...+...|+.+.+.+.+....+ .+ ..........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34555666666667777776555544321 12 1222233445677889999999999887752 223333332 2
Q ss_pred HHHhc----cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 046956 338 SACSQ----VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIH 410 (574)
Q Consensus 338 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 410 (574)
..+.. .+..+.+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 22222 3444444444443 1222333332455667788899999999999998773 3456778888899999
Q ss_pred CChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHH-H--HHHHHHhhcCCH
Q 046956 411 GHGRQAVSLFDRMLSEGL-TPDE--VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY-A--CMVDLLGRTGHL 484 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~ 484 (574)
|++++|..++++...... .|+. ..|..+...+...|++++|..+++++.......+..... + .+...+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999998887421 1232 245577888899999999999999986431111222211 1 223333444432
Q ss_pred HHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C--------CCchhHHHHHHHHHhcC
Q 046956 485 KSAYEL---LNSM----PVEPHASAWGALLGACKLYSDIELGELVANRLFELE-P--------QNAGSYVLLSNIYATAD 548 (574)
Q Consensus 485 ~~A~~~---~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g 548 (574)
+.+.+. .... ..............++...|+.+.|...++.+.... . .........+.++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 1111 111111222244567788999999999998876642 1 13456677888899999
Q ss_pred CchHHHHHHHHHHhCC
Q 046956 549 RWLDVCLVRSKMKERG 564 (574)
Q Consensus 549 ~~~~a~~~~~~~~~~~ 564 (574)
++++|.+.+.+.....
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998877543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-07 Score=81.44 Aligned_cols=187 Identities=8% Similarity=0.032 Sum_probs=107.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcC
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG 380 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 380 (574)
.+..+...|+...|+.....+++. .+-|...+..-..+|...|++..|+.=+..+.+...+.+. ....+...+...|
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe--~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE--GHYKISQLLYTVG 237 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH--HHHHHHHHHHhhh
Confidence 445566788889999988888875 3557777777788888889888888777777665544443 5667788888889
Q ss_pred CHHHHHHHHhhCCC--CChhH----HHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCC--HH---HHHHHHH
Q 046956 381 NMDRAAELFETMPN--RDVVS----YCSM---------IKGLSIHGHGRQAVSLFDRMLSEGLTPD--EV---AFTIVLT 440 (574)
Q Consensus 381 ~~~~A~~~~~~~~~--~~~~~----~~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~---~~~~l~~ 440 (574)
+.+.++..+.+..+ ||... |..+ +......+++.++++-.++..+. .|. .. .+..+-.
T Consensus 238 d~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCT 315 (504)
T ss_pred hHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeee
Confidence 99988888888775 43321 1111 11122334444455444444442 222 11 2223333
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
++...|++.+|++...++.. -.+.|+.++..-..+|.-...+++|+.-|+.+
T Consensus 316 C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred cccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444555555555554442 11222444444444454444555555544444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.4e-09 Score=94.29 Aligned_cols=247 Identities=11% Similarity=0.046 Sum_probs=163.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.... .+... ....+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~-av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQ-AVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCH-HHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHH-HHHHHHHHHhCccc
Confidence 344566789999887666 332222223445556677888888765432 3333333 33333 45555555544456
Q ss_pred HHHHHHHHhhCC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046956 382 MDRAAELFETMP-NR----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFE 456 (574)
Q Consensus 382 ~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 456 (574)
-+.+..-++... ++ +..........+...|++++|++++.+- .+.......+..+.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666766666544 22 2222222234455679999999888642 455677788889999999999999999
Q ss_pred HhHhhcCCCCcHHHHHHHHHHH----hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 457 AMQNVYAIVPSPEHYACMVDLL----GRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.|.+ ...|. +...++.++ ...+.+.+|..+|+++ ...+++.+.+.+..+....|++++|++.++++++.+
T Consensus 156 ~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9985 33443 333344433 3334799999999999 344678888888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCc-hHHHHHHHHHHhCC
Q 046956 531 PQNAGSYVLLSNIYATADRW-LDVCLVRSKMKERG 564 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~ 564 (574)
|+++.++.+++.+....|+. +.+.+++.+++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 99999999999999999988 66778888877643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-08 Score=88.52 Aligned_cols=178 Identities=10% Similarity=-0.008 Sum_probs=116.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RD-V---VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE----VAFTI 437 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ 437 (574)
.+..++..+...|++++|...|+++.+ |+ . ..+..+..++...|++++|...++++.+. .|+. .++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHHHH
Confidence 566677777777888888777776653 22 1 35566677777778888888888877764 3322 13444
Q ss_pred HHHHHhcc--------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046956 438 VLTACSHV--------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509 (574)
Q Consensus 438 l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 509 (574)
+..++... |++++|.+.++.+... .+-+...+..+..... ..... ......+...
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHHH
Confidence 45555443 6677777777777753 2222222222211111 00000 0011244567
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 510 CKLYSDIELGELVANRLFELEPQNA---GSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+...|++++|+..++++++..|+++ .++..++.++...|++++|..+++.+..+.
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8899999999999999999977654 789999999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-06 Score=87.17 Aligned_cols=435 Identities=11% Similarity=0.015 Sum_probs=250.0
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHcc
Q 046956 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDE 196 (574)
Q Consensus 117 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (574)
...|+..|-+..+..+. =...|..|...|+...+...|.+.|+...+.+ ..|........+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55666666555554221 23457777777777677778888888877654 44566777788888888888888877544
Q ss_pred CCCCCh-----hhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHHHHHHhcCC--CCch-h
Q 046956 197 MPERNV-----VSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSARQLFDEMP--ERNV-V 265 (574)
Q Consensus 197 ~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~-~ 265 (574)
..+.+. ..|....-.|.+.++...|+.-|+...+. |...|..+..+|.++|.+..|.+.|.+.. +|+. .
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 433221 23444445566777778888777777653 44566677888888888888888886332 2322 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCC----------CHhHHHHHHHHHHhCCCchHHHHHHHHHHH-------CCC--
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDR----------DVVAWSALISGYAQNGQPDEAVKIFSDMCS-------KNV-- 326 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------~~~-- 326 (574)
.-.-..-+-+..|.+.+|...+..+... -..++-.+...+...|-..+|...++.-++ ...
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2222233455667777777776655421 122232233333333333333333332211 111
Q ss_pred ---------------------CCCHHHHHHHHHHHhccCCc---c---hHHHHHHHHHHhCCCCChhhHHHHHHHHhHh-
Q 046956 327 ---------------------QPDEFILVSLMSACSQVGNL---D---LSNWVDSYLSRSHMDLSRAHVIAALVDMNAK- 378 (574)
Q Consensus 327 ---------------------~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 378 (574)
.|+......+..-....+.. + .+.+.+-.-.+.-..+. .+..++..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~---~WyNLGinylr~ 788 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMY---PWYNLGINYLRY 788 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccc---hHHHHhHHHHHH
Confidence 12222222221112222222 1 00011100001101111 22233332222
Q ss_pred ---c----CCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 046956 379 ---C----GNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGL 447 (574)
Q Consensus 379 ---~----g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 447 (574)
+ .+...|...+.+.. ..+..+||.|.-. ...|++.-+...|-+-... .|. ..+|..+.-.+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEeccc
Confidence 1 12335677776655 3566777777655 5567777777777766653 444 4588888888889999
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPHASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
++.|...|...+. -.+.+...|.-........|+.-++..+|..- +.-|+...|......-...|++++-+
T Consensus 866 ~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred HHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 9999999998875 34445566665555666788888888888762 22345555555544555566655444
Q ss_pred H----------HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 521 L----------VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 521 ~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
. .+++.+...|++..+|...+...-+.+.+.+|.++..+.+
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3 4455566689999999999999999999998888877654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.1e-08 Score=82.60 Aligned_cols=120 Identities=10% Similarity=0.056 Sum_probs=74.3
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGA-CKLYSD--IELG 519 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a 519 (574)
.++.+++...++...+ .-+.+...|..++..|...|++++|...++++ ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4455555656665554 34455666666666666666666666666665 3444 34444444444 345555 4677
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
.++++++++.+|+++.++..++..+.+.|++++|...++++.+....
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77777777777777777777777777777777777777776655443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-05 Score=77.44 Aligned_cols=245 Identities=13% Similarity=0.084 Sum_probs=148.1
Q ss_pred HHhhccCCCChhhHHHHH--HHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHh-C-
Q 046956 91 AVFNRIVNPNTFLWNTLL--KGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRW-G- 166 (574)
Q Consensus 91 ~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g- 166 (574)
+=|-...+-|..+-..|+ +-|..-|+.+.|++-.+.++ +...|..+.+.|.+..+++-|.-.+..|... |
T Consensus 716 rdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 716 RDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 333334456777777776 35678899999988876654 3456888999999998888887777766432 1
Q ss_pred ------CCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC-CcchHHHH
Q 046956 167 ------VDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER-SNVSWNAL 239 (574)
Q Consensus 167 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l 239 (574)
.+.+...-....-.....|.+++|..+|.+-.. |..|=..|...|.|++|+++-+.-.+- =..||..-
T Consensus 790 RAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 790 RALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred HHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 111112222333344567888999998887543 444556777889999999887653321 23467777
Q ss_pred HHHHHccCChHHHHHHHhcCCCC-----------------------chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHh
Q 046956 240 IGGLVKIGDLRSARQLFDEMPER-----------------------NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVV 296 (574)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 296 (574)
..-+...++.+.|++.|++-..+ |...|.--....-..|+.+.|+.+|+...
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----- 939 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----- 939 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----
Confidence 77777888899999888844222 22223333333334455555555554432
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHH
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLS 357 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 357 (574)
-|-.+++..|-.|+.++|-++-++- -|......+.+.|.+.|++.+|..+|.++.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2344444555555555555554432 144445555666666666666666655544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-06 Score=91.19 Aligned_cols=357 Identities=13% Similarity=0.042 Sum_probs=222.0
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcc--hHHHHHHHHHccCChHHHHHHHhcCC----CCchhHHHHHHHHHHhcCChH
Q 046956 208 MIVGYASVGDLVEAKTVFDLMPERSNV--SWNALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKVGDMT 281 (574)
Q Consensus 208 li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 281 (574)
....+...|++.+|..........+.. ............|+++.+...+..+. ..+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 344455667777776666555433211 11222334455677777777777552 122333344555667788999
Q ss_pred HHHHHHhhCCC----C----C----HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCC
Q 046956 282 SARSLFEAAPD----R----D----VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE----FILVSLMSACSQVGN 345 (574)
Q Consensus 282 ~A~~~~~~~~~----~----~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~ 345 (574)
+|...+..... . + ......+...+...|++++|...+++..+.-...+. .....+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 98888765421 1 1 112223344566789999999999987763111121 233445556678899
Q ss_pred cchHHHHHHHHHHhCC----CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHc
Q 046956 346 LDLSNWVDSYLSRSHM----DLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-------R----DVVSYCSMIKGLSIH 410 (574)
Q Consensus 346 ~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~ 410 (574)
++.|...+........ ..........+...+...|++++|...+++... + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999988887764322 111122455667788889999999988876542 1 122344556667778
Q ss_pred CChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHH-----HHHHHHHhhc
Q 046956 411 GHGRQAVSLFDRMLSE--GLTPD--EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY-----ACMVDLLGRT 481 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~--g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~ 481 (574)
|++++|...+.+.... ...+. ...+..+...+...|++++|.+.++.+............+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 9999999998887653 11222 2345556667788899999999988875421111111111 1122444568
Q ss_pred CCHHHHHHHHHhCCC-C-CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHHhcCC
Q 046956 482 GHLKSAYELLNSMPV-E-PHAS----AWGALLGACKLYSDIELGELVANRLFELE------PQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 482 g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~ 549 (574)
|+.+.|.+.+..... . .... .+..+..++...|++++|...+++++... +....++..++.++.+.|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 899999999877621 1 1111 13345577888999999999999988752 1223467788999999999
Q ss_pred chHHHHHHHHHHhCC
Q 046956 550 WLDVCLVRSKMKERG 564 (574)
Q Consensus 550 ~~~a~~~~~~~~~~~ 564 (574)
.++|...+.+..+..
T Consensus 747 ~~~A~~~L~~Al~la 761 (903)
T PRK04841 747 KSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887644
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-06 Score=73.73 Aligned_cols=287 Identities=12% Similarity=0.036 Sum_probs=154.7
Q ss_pred cCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHH-HHHHHhccCCcHHHHH
Q 046956 82 LATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPL-VIKACSHVLSVREGTA 157 (574)
Q Consensus 82 ~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~ 157 (574)
+..++++|++++..-. +.+....+.+.-.|....++..|...|+++-+. .|...-|.. -..++.+.+.+..|.+
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5666777777765543 224555666666677777777777777777654 334433432 2344556667777777
Q ss_pred HHHHHHHhCCCCCcchHHHHH--HHHHcCCChHHHHHHHccCC-CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---
Q 046956 158 IHAAVIRWGVDEDVFVGTSLI--DLYGKRKEISCARKVFDEMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER--- 231 (574)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 231 (574)
+...|.+. +....-..-+ ...-..+|+..+..++++.. +.+..+.+.......+.|++++|++-|+...+-
T Consensus 100 V~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 100 VAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 76666432 1111111111 11224566666777777666 344455555555556667777777766665542
Q ss_pred -CcchHHHHHHHHHccCChHHHHHHHhcCCC-----------------CchhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 046956 232 -SNVSWNALIGGLVKIGDLRSARQLFDEMPE-----------------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293 (574)
Q Consensus 232 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 293 (574)
....|+..+ +..+.++++.|.+...++.+ +|+.....-+.+. .. .
T Consensus 177 qpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh---------~S-------a 239 (459)
T KOG4340|consen 177 QPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH---------QS-------A 239 (459)
T ss_pred CchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH---------HH-------H
Confidence 222333322 33344555555554442210 0100000000000 00 0
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKN-VQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 372 (574)
=+.++|.-...+.+.|+++.|.+.+-.|.... ...|++|...+.-.- ..+++.....-+..+...++-|.. ++..+
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E--TFANl 316 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE--TFANL 316 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH--HHHHH
Confidence 01234444555677888888888888775432 344666666543322 234455555556666666553333 78889
Q ss_pred HHHhHhcCCHHHHHHHHhhCC
Q 046956 373 VDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~ 393 (574)
+-.|++..-++-|-+++.+-.
T Consensus 317 LllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCc
Confidence 999999888888888887654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-07 Score=95.59 Aligned_cols=208 Identities=13% Similarity=0.122 Sum_probs=157.0
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046956 353 DSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--------RDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424 (574)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 424 (574)
|++.+...+..+. .|-..+......++.++|.++++++.. .-...|.+++..-...|.-+...++|+++.
T Consensus 1447 ferlvrssPNSSi--~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSI--LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcCCCcch--HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3334444333333 566677777788888888888887763 223578888887777888888888888888
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H
Q 046956 425 SEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---A 500 (574)
Q Consensus 425 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~ 500 (574)
+. ......|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.+.++-+.|..++.++ ..-|. .
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 73 22234788888888899999999999999988544 66778888888888988888888888776 33333 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
......+..-.+.||.+++..+|+..+...|.-...|..+++.-.+.|+.+.++.+|++.+..++.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 334444566678899999999999988888988889999999888999999999999988877764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=77.30 Aligned_cols=122 Identities=11% Similarity=-0.004 Sum_probs=88.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 046956 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV 496 (574)
Q Consensus 418 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 496 (574)
.++++.++ +.|+. +..+...+...|++++|...|+.+.. --+.+...|..++.++.+.|++++|...|+++ ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45556555 34553 44456667778888888888888775 34446677778888888888888888888777 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 497 EP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 497 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
.| +...+..+..++...|++++|+..++++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44 46667777777888888888888888888888888888877766644
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=76.95 Aligned_cols=108 Identities=8% Similarity=-0.052 Sum_probs=92.9
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 453 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.++++..+ ..|+ .+..+...+...|++++|...|+.+ ...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45556553 2344 4666788999999999999999987 5555 57788888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|+++.++..++.++...|++++|...+++..+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999987654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-06 Score=79.06 Aligned_cols=186 Identities=12% Similarity=0.066 Sum_probs=118.2
Q ss_pred HHHhHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 373 VDMNAKCG-NMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHG--RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446 (574)
Q Consensus 373 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 446 (574)
..++...| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.+++++++.. +-|..+|.....++...|
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhh
Confidence 33333444 35566666655542 2334555544444444542 56777777777742 234457777777777778
Q ss_pred cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----
Q 046956 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT---GHL----KSAYELLNSM-PVEP-HASAWGALLGACKLY---- 513 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---- 513 (574)
+++++++.++++++. -+-+...|+....++.+. |.. ++++++..++ ...| +...|+.+...+...
T Consensus 157 ~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 157 GWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred hHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 888888888888763 334556666655555443 222 4566666444 4455 456777777777662
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC------------------CchHHHHHHHHHH
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATAD------------------RWLDVCLVRSKMK 561 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~~~ 561 (574)
+...+|...+.+++..+|+++.++..|+++|.... ..++|.++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 44567889999988889999999999999998643 2367888888774
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-05 Score=74.97 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcch-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHH---HH
Q 046956 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYT-FPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGT---SL 177 (574)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~l 177 (574)
.|..+...+...|+.+.+...+....+... .++... .......+...|++++|..+++...+.. +.+...+. .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344455555556666666555555443321 111111 1111223346677777777777776653 22332332 11
Q ss_pred HHHHHcCCChHHHHHHHccCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHH
Q 046956 178 IDLYGKRKEISCARKVFDEMPE--RN-VVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQ 254 (574)
Q Consensus 178 i~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (574)
.......+..+.+.+.++.... ++ ......+...+...|++++|.+.+++..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---------------------- 144 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---------------------- 144 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------
Confidence 1222223444555555544222 11 1223334455666667777766666654321
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC--HhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 046956 255 LFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD-----RD--VVAWSALISGYAQNGQPDEAVKIFSDMCS 323 (574)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 323 (574)
+.+...+..+...+...|++++|...+++... ++ ...|..+...+...|++++|..++++...
T Consensus 145 ------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 145 ------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred ------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 23344455555566666666666666655443 11 12344566677777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.8e-07 Score=76.71 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=117.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
|... ..+-..+...|+-+....+..+.... .+.|......++....+.|++..|...+.++.. .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 3344 55666777778777777777665442 123334555577777888888888888888876 6777888888888
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHH
Q 046956 476 DLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (574)
-+|.+.|++++|..-|.+. ...| ++...+++...+.-.||.+.|..++..+....+.+..+-..|+.+....|++.+|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 8888888888888877766 4444 4556777777788888888888888888877777888888888888888888888
Q ss_pred HHHHH
Q 046956 554 CLVRS 558 (574)
Q Consensus 554 ~~~~~ 558 (574)
..+..
T Consensus 222 ~~i~~ 226 (257)
T COG5010 222 EDIAV 226 (257)
T ss_pred Hhhcc
Confidence 77654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00067 Score=74.72 Aligned_cols=354 Identities=11% Similarity=-0.019 Sum_probs=222.7
Q ss_pred HHHHHcCCChHHHHHHHccCCCCChhh--HHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHccCChHH
Q 046956 178 IDLYGKRKEISCARKVFDEMPERNVVS--WTAMIVGYASVGDLVEAKTVFDLMPE----RSNVSWNALIGGLVKIGDLRS 251 (574)
Q Consensus 178 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 251 (574)
...+...|++.+|..........+... .......+...|+++.+..+++.+.. .++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 444566677777766665554432211 11223345567888888888877632 234444445556677888888
Q ss_pred HHHHHhcCC----CC----c----hhHHHHHHHHHHhcCChHHHHHHHhhCCC----CC----HhHHHHHHHHHHhCCCc
Q 046956 252 ARQLFDEMP----ER----N----VVSYTTMIDGYAKVGDMTSARSLFEAAPD----RD----VVAWSALISGYAQNGQP 311 (574)
Q Consensus 252 a~~~~~~~~----~~----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~~~~ 311 (574)
+...+.... .. + ......+...+...|++++|...+++... .+ ..+.+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 888776321 11 1 11223344566789999999998876532 22 13456667778889999
Q ss_pred hHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCCcchHHHHHHHHHHh----CCC--CChhhHHHHHHHHhHhcC
Q 046956 312 DEAVKIFSDMCSKNV---QP--DEFILVSLMSACSQVGNLDLSNWVDSYLSRS----HMD--LSRAHVIAALVDMNAKCG 380 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g 380 (574)
++|...+++.....- .+ ...++..+...+...|+++.|...+...... +.. +.....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988764311 11 1234455666778899999999988876643 211 111223455677778889
Q ss_pred CHHHHHHHHhhCCC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHhccC
Q 046956 381 NMDRAAELFETMPN------R--DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG--LTPDEV--AF--TIVLTACSHVG 446 (574)
Q Consensus 381 ~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~--~~--~~l~~~~~~~g 446 (574)
++++|...+.+... + ....+..+...+...|++++|...+.+..... ...... .. ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999998887642 1 12344556677888999999999998875421 111111 11 11223345578
Q ss_pred cHHHHHHHHHHhHhhcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC
Q 046956 447 LVEDGWRFFEAMQNVYAIVPS---PEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPH-ASAWGALLGACKLYSD 515 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~ 515 (574)
+.+.|...+...... ..... ...+..+..++...|++++|...++++ +...+ ..+...+..++...|+
T Consensus 668 ~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 668 DKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 999999998776542 11111 112456778889999999999998876 11111 2244455578899999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 046956 516 IELGELVANRLFELEPQ 532 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~ 532 (574)
.++|...+.+++++...
T Consensus 747 ~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 747 KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999998543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00042 Score=70.68 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++...+.|.+++-.+++..+.++ .-.|..+ ..|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 45688888888888888888876643 345668889999999999999999988877775 5555544 56888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
+|.+.|++.+-.+++. .|+......+..-|...|.++.|.-+|.. ...|..|+..+...|+++.|...
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888777664 47777778888888888888888777654 45577777778888887777655
Q ss_pred HHH
Q 046956 557 RSK 559 (574)
Q Consensus 557 ~~~ 559 (574)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-07 Score=84.91 Aligned_cols=254 Identities=15% Similarity=0.082 Sum_probs=154.0
Q ss_pred HHHhcCChHHHHHHHhhCCCC---CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCcch
Q 046956 273 GYAKVGDMTSARSLFEAAPDR---DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP-DEFILVSLMSACSQVGNLDL 348 (574)
Q Consensus 273 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 348 (574)
-+.+.|++.+|.-.|+...+. +..+|.-|.......++-..|+..+++..+. .| +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 345566666666666655442 3455666666666666666666666666554 33 23344444445555555555
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH-HCC
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML-SEG 427 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g 427 (574)
|...++..++..++.... ... ...++.. + + ..+..........++|-++. +.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l------~~a-~~~~~~~-----------~---~-----~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHL------VSA-GENEDFE-----------N---T-----KSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred HHHHHHHHHHhCccchhc------ccc-Ccccccc-----------C---C-----cCCCCHHHHHHHHHHHHHHHHhCC
Confidence 555554444333221100 000 0000000 0 0 01111112233444444443 444
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 046956 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGA 505 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 505 (574)
..+|+.....|.-.|--.|++++|...|+.+.. .-+-|-..||.|...+....+.++|+..|+++ ..+|. ...+..
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 446777777777778888999999999999885 34445688999999999999999999999888 67786 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC-----C-----chhHHHHHHHHHhcCCchHHHHH
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQ-----N-----AGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
+.-.|...|.+++|...|-.++.+.+. . -.+|..|-.++..+++.|-+.+.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 888899999999999999988887443 1 24677777777777776644443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-06 Score=89.65 Aligned_cols=222 Identities=15% Similarity=0.186 Sum_probs=179.3
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHhcCCC--------CchhHHHHHHHHHHhcCChHHHHHHHhhCCCC--CHhHHHHH
Q 046956 232 SNVSWNALIGGLVKIGDLRSARQLFDEMPE--------RNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR--DVVAWSAL 301 (574)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 301 (574)
+...|...+......+++++|+++.++... .-...|.++++.-..-|.-+...++|++..+- ....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 345677777788888888888888883321 22457888888888888888999999998873 35678899
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++.+.-+......+....+.+-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999886 44667889999999999999999999999998877665555578888899999999
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHH
Q 046956 382 MDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV--AFTIVLTACSHVGLVEDGWRF 454 (574)
Q Consensus 382 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~ 454 (574)
.+.+..+|+.... .-...|+..++.-.++|+.+.+..+|++.+..++.|-.. .|...+..--..|+-..+..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 9999999998874 356799999999999999999999999999998888653 666666655555665444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00025 Score=67.43 Aligned_cols=174 Identities=15% Similarity=0.174 Sum_probs=124.4
Q ss_pred HHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 046956 382 MDRAAELFETMPN----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFE 456 (574)
Q Consensus 382 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 456 (574)
.+...+.++++.. .-..+|-.++..-.+..-...|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4455555555542 223467778888888888999999999999988777 4457777777665 478899999999
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 457 AMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP---VEP--HASAWGALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
.-.+ .+..++.--...++.+...|+-..|..+|++.. ..| ....|..++..-..-|+...+.++-++.....|
T Consensus 426 LGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 8887 444455555677888899999999999999882 233 357899999888899999999999888877666
Q ss_pred CCc----hhHHHHHHHHHhcCCchHHHHHHH
Q 046956 532 QNA----GSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 532 ~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
.+. ..-..+.+.|.-.+.+..-..-++
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 321 123344555666665554443333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-05 Score=67.44 Aligned_cols=250 Identities=14% Similarity=0.056 Sum_probs=141.0
Q ss_pred HHhcCChHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchH-H
Q 046956 274 YAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS-N 350 (574)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~ 350 (574)
+.-.|++..++..-..... .+...-.-+.++|...|++.....-.. . |-.|....+..+.......++.+.- .
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~---~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIK---E-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccc---c-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3334566665554443322 233333445566666666544333221 1 1233344444444444444443332 3
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 430 (574)
.+.+.+.......+.. ....-+..|...|++++|.+....... ......=+..+.+..+.+-|...+++|.+ -.
T Consensus 94 ~l~E~~a~~~~~sn~i-~~l~aa~i~~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLI-DLLLAAIIYMHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQ---ID 167 (299)
T ss_pred HHHHHHHhhccchhHH-HHHHhhHHhhcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc
Confidence 3344444443333322 333445567777888888887777333 22222223445566677888888888876 33
Q ss_pred CHHHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 046956 431 DEVAFTIVLTACSH----VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWG 504 (574)
Q Consensus 431 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 504 (574)
+..|.+.|..++.+ .+.+.+|.-+|+++.+ +.+|++.+.+-.+-++...|++++|..+++++ +...++.++.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 55567666666543 3457778888888876 57777777777777778888888888888777 3334566666
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhhCCCCch
Q 046956 505 ALLGACKLYSD-IELGELVANRLFELEPQNAG 535 (574)
Q Consensus 505 ~l~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~ 535 (574)
.++..-...|. .+-..+...++....|..+.
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 66644444444 34445666666666776554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-06 Score=73.62 Aligned_cols=156 Identities=7% Similarity=0.091 Sum_probs=117.7
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046956 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 451 (574)
-+-.|...|+++.+....+.+..+. ..+...++.+++...+++..+.. +.+...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777888877655554333221 01223567788888888888753 45566899999999999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLL-GRTGH--LKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
...|+++.+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 93 ~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999987 4455678888888864 67777 59999999998 5556 4567777778999999999999999999
Q ss_pred HhhCCCCchhHH
Q 046956 527 FELEPQNAGSYV 538 (574)
Q Consensus 527 ~~~~p~~~~~~~ 538 (574)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999877665443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=85.90 Aligned_cols=209 Identities=11% Similarity=0.007 Sum_probs=125.0
Q ss_pred HHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCCh
Q 046956 336 LMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHG 413 (574)
Q Consensus 336 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~ 413 (574)
+...+...|-...|..+++++. .+..++..|...|+..+|..+..... +||+..|..+++......-+
T Consensus 404 laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 3444555555555555555543 45556666666666666666554433 35555666666555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (574)
++|.++.+..... .-..+.......++++++.+.|+.-.+ --+.-..+|-.+.-+..+.++++.|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 5666555543221 111112222335666666666666554 2223345666666666777777777777766
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 494 M-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 494 ~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
. ...|+ ...|+++-.+|.+.++-.+|...++++++.+-.+..++.+..-+...-|.|++|.+.+.++.+.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5 44554 4567777777777777777777777777777666666666666677777777777777766543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-06 Score=72.33 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=122.5
Q ss_pred CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438 (574)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 438 (574)
.|....+ ..+...+.-.|+-+....+..... ..|....+..+....+.|++..|...+++..... ++|..+|+.+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 3433324 556666777777777777776644 2455667778888889999999999999988753 5566799999
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE--PHASAWGALLGACKLYSDI 516 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~ 516 (574)
.-+|.+.|+.+.|..-|.+..+ -.+-++..++.+...|.-.|+++.|..++.+.... -|...-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 9999999999999999999887 44455678888988999999999999999887322 2566677777888889999
Q ss_pred HHHHHHHHH
Q 046956 517 ELGELVANR 525 (574)
Q Consensus 517 ~~a~~~~~~ 525 (574)
++|+.+..+
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 998887665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-06 Score=85.72 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=76.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 474 (574)
++..+..|.....+.|++++|..+++...+ +.|+.. ....++..+.+.+++++|+..+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 355555566666666666666666666665 455543 555555566666666666666666654 333345555556
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 475 VDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
..++...|++++|..+|+++ ...|+ ...+..+..++...|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 66666666666666666665 22333 4455555566666666666666666666654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-07 Score=73.03 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
+......+...+...|++++|.++|+-+ ...| +...|..+...+...|++++|+..|.++..++|++|.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455666777888999999999999988 5566 4667788888899999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 046956 545 ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~ 564 (574)
...|+.+.|.+.|+..+...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887644
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=83.31 Aligned_cols=239 Identities=9% Similarity=0.066 Sum_probs=143.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046956 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--R-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338 (574)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 338 (574)
.+...+..|+..|...+++++|.++.+...+ | ....|-.+...+.+.++.+++..+ .+ +.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------ID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hh
Confidence 4556677777777777777777777765443 2 233444444466666665555444 22 22
Q ss_pred HHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHH
Q 046956 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQ 415 (574)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 415 (574)
......++.....+...+...+. ...++..++.+|-+.|+.++|..+++++.+ .|+.+.|.+.-.|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~~---~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYGE---NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhhh---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 22222333333333333333221 111566777777777777777777777663 3566777777777777 7777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046956 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (574)
|..++.+.... +...+++..+.++|.++.. ..+.+...+..+.+..... .+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~ 218 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------RE 218 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hc
Confidence 77777776652 4555567777777777775 2223333333222222111 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchH
Q 046956 496 VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552 (574)
Q Consensus 496 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (574)
..--..++.-+...|...+++++++.+++.+++.+|.|..+...++.+|. +.|.+
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 12223445555577788889999999999999999999999999998877 55555
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-05 Score=68.23 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=103.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RDVV-SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
+|..+.-+...+|+.+.|..+++.+.. |+.. +-..-...+-..|++++|+++|+.+++.. +.|.+++..-+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 455555555566666666666665542 2111 11111122334577778888888777754 3344566655555556
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---cCCHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKL---YSDIELG 519 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~---~~~~~~a 519 (574)
.|...+|++-+....+ .+..|.+.|..+...|...|++++|.-.++++ -.+|. +..+..+...+.- ..+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6766777777777776 66777788888888888888888888777777 34554 3333444433322 3356778
Q ss_pred HHHHHHHHhhCCCCchhHHH
Q 046956 520 ELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~ 539 (574)
.++|.++++++|.+...++-
T Consensus 211 rkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHHHhChHhHHHHHH
Confidence 88888888888865554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00054 Score=65.24 Aligned_cols=130 Identities=12% Similarity=0.172 Sum_probs=88.2
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHH
Q 046956 66 EQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142 (574)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 142 (574)
+-|...|+.|+ +-+... ..++.++.++++. +-.+..|..-|..-.+.++++.+..+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~li-re~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLI-REAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHH-HHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 67889999999 766555 8999999999986 335678999999999999999999999998776 3456677776
Q ss_pred HHHHhcc-CCcHH----HHHHHHHH-HHhCCCCCc-chHHHHHHHH---------HcCCChHHHHHHHccCCC
Q 046956 143 IKACSHV-LSVRE----GTAIHAAV-IRWGVDEDV-FVGTSLIDLY---------GKRKEISCARKVFDEMPE 199 (574)
Q Consensus 143 l~~~~~~-~~~~~----a~~~~~~~-~~~g~~~~~-~~~~~li~~~---------~~~g~~~~A~~~~~~~~~ 199 (574)
|.-..+. +.... -.+.|+.. .+.|+++-. ..|+..+..+ ..+.+++...++++++..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6654322 23222 22334433 344554433 3455555432 334466777888888764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-05 Score=82.76 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=82.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RD-VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~ 443 (574)
.+..|+.+....|.+++|..+++.+.+ || ...+..++..+.+.+++++|+..+++.... .|+.. ....+..++.
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHH
Confidence 666677777777777777777777663 43 345566667777777777777777777763 45443 5555666667
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
+.|++++|..+|+++.. ..+-+..++..+..++...|+.++|...|++.
T Consensus 166 ~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 166 EIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777775 33334566667777777777777777777766
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-05 Score=75.27 Aligned_cols=194 Identities=9% Similarity=0.049 Sum_probs=142.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHG-HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
++..+-..+...++.++|....+++.+ | +..+|+.....+...| ++++++..++++.+.. +.+..+|......+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 344444555667788888888888774 3 3446766666667777 6799999999999853 233346665555555
Q ss_pred ccCc--HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC-
Q 046956 444 HVGL--VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLY---SD- 515 (574)
Q Consensus 444 ~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~- 515 (574)
+.|. .+++..+++++.+ .-+-+..+|+....++...|+++++++.++++ ...| +...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 5665 3678899988886 45567889999999999999999999999998 4344 567787777665544 22
Q ss_pred ---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc----CCchHHHHHHHHHHhCC
Q 046956 516 ---IELGELVANRLFELEPQNAGSYVLLSNIYATA----DRWLDVCLVRSKMKERG 564 (574)
Q Consensus 516 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~ 564 (574)
.+.++.+..++++.+|+|..+|..+..++... ++..+|.+.+.+..+.+
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 35788888899999999999999999999883 45567888887766543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=71.49 Aligned_cols=100 Identities=7% Similarity=0.031 Sum_probs=52.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
....+...+...|++++|.+.++.+.. ..+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344444555555666666666665554 22334455555555555555555555555554 2233 2334444445555
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCch
Q 046956 512 LYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
..|++++|...++++++..|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 97 ALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HcCCHHHHHHHHHHHHHhccccch
Confidence 555555555555555555555444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-06 Score=83.29 Aligned_cols=182 Identities=16% Similarity=0.185 Sum_probs=156.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 447 (574)
.-..+...+...|-...|..+|+++. .|...|.+|...|+..+|..+..+-.+ -+|++..|..+.+.....--
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 56678899999999999999999864 788889999999999999999998887 47889999999998888888
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
+++|.++.+..... .-..+.....+.++++++.+.|+.. ..+| -..+|..+.-+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 89999888776542 2333444455689999999999865 5555 456888888888999999999999999
Q ss_pred HHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 526 LFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.+.++|++...|+++..+|.+.|+..+|...+++..+-+
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999998876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.4e-08 Score=55.66 Aligned_cols=32 Identities=41% Similarity=0.557 Sum_probs=20.7
Q ss_pred CCCCCcchHHHHHHHHHcCCChHHHHHHHccC
Q 046956 166 GVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197 (574)
Q Consensus 166 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (574)
|++||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-06 Score=74.92 Aligned_cols=184 Identities=13% Similarity=-0.004 Sum_probs=130.2
Q ss_pred CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC-hhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-hh---H
Q 046956 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAELFETMPN--RD-VV---S 399 (574)
Q Consensus 327 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 399 (574)
......+......+...|+++.|...++.+.+..+... ....+..++..+.+.|++++|...++.+.+ |+ .. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34566778888889999999999999999988765432 222677889999999999999999999873 32 22 4
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHH
Q 046956 400 YCSMIKGLSIH--------GHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH 470 (574)
Q Consensus 400 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 470 (574)
+..+..++... |++++|.+.++++... .|+.. .+..+..... . .. ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~-~~~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RN-RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HH-HHH--------HH
Confidence 55566666654 7789999999999884 55543 3322221100 0 00 000 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-PV---EP-HASAWGALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
...+...|.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788999999999988887 22 23 245777888999999999999998888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-05 Score=68.75 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
.|..++-+....|+.+.|...++++... + |... .-..-..-+...|++++|.++|+...+ ..+.|..++-.-+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHH
Confidence 3445555666789999999999998875 4 5443 333333345667999999999999998 446666777766777
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC---CchH
Q 046956 478 LGRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD---RWLD 552 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 552 (574)
.-..|+.-+|++-+... .+-.|...|..+...|...|+++.|.-.+++++-+.|.++..+..+++++.-.| +++-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788888888877665 456789999999999999999999999999999999999999999999988776 5667
Q ss_pred HHHHHHHHHhCCC
Q 046956 553 VCLVRSKMKERGL 565 (574)
Q Consensus 553 a~~~~~~~~~~~~ 565 (574)
+++++.+..+.+.
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888888877665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-05 Score=65.72 Aligned_cols=219 Identities=13% Similarity=0.103 Sum_probs=137.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAV-KIFSDMCSKNVQPDEFILVSLMSACSQVG 344 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 344 (574)
.-.-+-+.|...|++.....-......+.......+......-++.+..+ ++.+.+.......+......-...|.+.|
T Consensus 43 ~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~ 122 (299)
T KOG3081|consen 43 LDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDG 122 (299)
T ss_pred HHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCC
Confidence 33344455555565544433333333233333333333333334433333 34444444433434344444445677778
Q ss_pred CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHH----cCChHHHHHH
Q 046956 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRD-VVSYCSMIKGLSI----HGHGRQAVSL 419 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~~~~~~a~~~ 419 (574)
++++|.+...... ... ....=+..+.+..+.+-|...++.|.+-| -.+.+.|..++.+ .+...+|.-+
T Consensus 123 ~~deAl~~~~~~~----~lE---~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyi 195 (299)
T KOG3081|consen 123 DFDEALKALHLGE----NLE---AAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYI 195 (299)
T ss_pred ChHHHHHHHhccc----hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 8887777665421 111 33444566777888889999998888643 4566666666654 3568899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHH-HHHHhC
Q 046956 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY-ELLNSM 494 (574)
Q Consensus 420 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 494 (574)
|++|.++ ..|+..+.+....++...|++++|..+++.+.. ....++.+...++-+-...|...++. +.+..+
T Consensus 196 feE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 196 FEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 9999876 589999999999999999999999999999997 45556777777777777777665543 344444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-05 Score=74.32 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=53.9
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 519 (574)
+...|.+++|+..++.+.. ..+.|+..+....+.+.+.|+.++|.+.++++ ...|+ ...+..+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3344555555555555554 33333444444455555555555555555554 33343 23333444555555555555
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 520 ELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
+.+++.....+|+++..|..|+..|...|+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 55555555555555555555555554444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-06 Score=67.10 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=85.4
Q ss_pred HHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 454 FFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 454 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.++++.. ..| +......++..+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++++.+
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445543 333 3455667778888899999999988887 4345 45667777788888899999999999998999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|+++..+..++.+|...|++++|...+++..+.+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999988877654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.2e-06 Score=79.27 Aligned_cols=122 Identities=15% Similarity=0.140 Sum_probs=97.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKL 512 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 512 (574)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345555666678888888888888764 244 4445777777788888888888776 3344 55556666678899
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
.++++.|+.+.+++.+..|++...|..|+.+|...|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.5e-05 Score=70.17 Aligned_cols=145 Identities=12% Similarity=0.073 Sum_probs=107.5
Q ss_pred HHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC
Q 046956 371 ALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVG 446 (574)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g 446 (574)
.....+...|++++|+..++.+. . .|+..+......+...++.++|.+.++++.. ..|+. .....+..++.+.|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC
Confidence 34444556677888888887765 2 3556666777888888888888888888887 46663 46667778888888
Q ss_pred cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 447 LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
++.+|+.+++.... ..+-|+..|..|..+|...|+..+|.....+ .+...|+++.|+..+..+
T Consensus 389 ~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHH
Confidence 88888888888876 6667788888888888888888777665433 456678888888888888
Q ss_pred HhhC-CCCc
Q 046956 527 FELE-PQNA 534 (574)
Q Consensus 527 ~~~~-p~~~ 534 (574)
.+.. ++.+
T Consensus 452 ~~~~~~~~~ 460 (484)
T COG4783 452 SQQVKLGFP 460 (484)
T ss_pred HHhccCCcH
Confidence 7764 4433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-07 Score=53.09 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=17.7
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0035 Score=63.64 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 046956 502 AWGALLGACKLYSDI---ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKI 568 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 568 (574)
+.+.++..+.+.+|. -+|+-+++..+...|.|+..-..|+.+|.-.|-...|.+.++.+.-++|..+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 445666778887764 5788888888899999999999999999999999999999998877777554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0025 Score=59.61 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=57.0
Q ss_pred HHHHhCCCCC----CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 489 ELLNSMPVEP----HASAWGALLG--ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 489 ~~~~~~~~~p----~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..+++.++.| +...-+.+.. .+..+|++.++.-.-..+.+..| ++.+|..+|-++....+|++|..++..+..
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3344444443 3445566653 35789999999998888889999 799999999999999999999999987654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6e-06 Score=72.49 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=42.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHL 484 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 484 (574)
+.+.+++.+|+..|.+.++ +.|+ .+-|..-..+|.+.|.++.|++-.+..+. +.|+ ...|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence 3344455555555555554 2332 23334444445555555555554444442 1222 34444455555555555
Q ss_pred HHHHHHHHhC-CCCCCHHHH
Q 046956 485 KSAYELLNSM-PVEPHASAW 503 (574)
Q Consensus 485 ~~A~~~~~~~-~~~p~~~~~ 503 (574)
++|++.|++. .+.|+..+|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhccCCCcHHH
Confidence 5555554444 444444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.2e-05 Score=78.23 Aligned_cols=210 Identities=12% Similarity=0.062 Sum_probs=152.2
Q ss_pred CCCC-CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHH
Q 046956 325 NVQP-DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM 403 (574)
Q Consensus 325 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 403 (574)
+..| +...+..|+..+...++++++.++.+...+..+.... .|..++..+...++.+.+..+ .+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~--~yy~~G~l~~q~~~~~~~~lv-------------~~ 89 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS--ALYISGILSLSRRPLNDSNLL-------------NL 89 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee--hHHHHHHHHHhhcchhhhhhh-------------hh
Confidence 3444 4567778888888889999999888877666554443 455555577777776555443 33
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 483 (574)
+.......++.-...++..|.. ..-+...+..+..+|.+.|+.+++..+|+++.+. -+-|+.+.|.++..|... +
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-h
Confidence 4444445555555555556665 2334458889999999999999999999999984 366789999999999998 9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH--------------------HHHHHH
Q 046956 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY--------------------VLLSNI 543 (574)
Q Consensus 484 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~--------------------~~l~~~ 543 (574)
+++|.+++.++ +..+...+++..+..+++++++.+|++...+ .-|-..
T Consensus 165 L~KA~~m~~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 165 KEKAITYLKKA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 99999998775 1225556688888888888888888876553 233366
Q ss_pred HHhcCCchHHHHHHHHHHhCCCc
Q 046956 544 YATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
|...++|+++..+++.+.+-..+
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc
Confidence 77788999999999999876544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-05 Score=73.73 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=105.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 447 (574)
+...|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++.+.++.. +-+......-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566777788888999999999999997777777778888888899999999999988742 3355566667777889999
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 046956 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE 497 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (574)
++.|+.+.+++.. -.+-+..+|..|+.+|...|++++|+-.++.++..
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999996 34445679999999999999999999999988633
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-06 Score=59.83 Aligned_cols=66 Identities=23% Similarity=0.184 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-CchHHHHHHHHHHhCC
Q 046956 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD-RWLDVCLVRSKMKERG 564 (574)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 564 (574)
++..|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|.+.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888899999999999999999999999999999999999999999 7999999999887643
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-05 Score=62.85 Aligned_cols=85 Identities=15% Similarity=0.069 Sum_probs=40.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 474 MVDLLGRTGHLKSAYELLNSM-PVEPHA----SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
+...+...|++++|...|+.+ ...|+. .....+...+...|++++|+..++. ....+-.+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence 344445555555555555544 111221 1222233445555555555555544 1222333445555666666666
Q ss_pred CchHHHHHHHH
Q 046956 549 RWLDVCLVRSK 559 (574)
Q Consensus 549 ~~~~a~~~~~~ 559 (574)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666665554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=63.27 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLG 508 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 508 (574)
+..++..+...|++++|...|+.+...+.-.+ ....+..++.++.+.|++++|.+.++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444555555555555555544211000 1223333444445555555555544443 11121 223333334
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
++...|++++|...++++++..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 444444555555555554444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-06 Score=63.23 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 481 TGHLKSAYELLNSM-PVEP---HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|+.++++ .+.+|.++.....++.++.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666 2222 334455566777777777777777777 666666667777777777788888887777
Q ss_pred HHH
Q 046956 557 RSK 559 (574)
Q Consensus 557 ~~~ 559 (574)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-05 Score=59.75 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=75.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
+..++..+...|++++|.+.++++ ...|+ ...+..+...+...+++++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677777888888888888776 33443 3556666778888899999999999999988888888899999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 046956 549 RWLDVCLVRSKMKERG 564 (574)
Q Consensus 549 ~~~~a~~~~~~~~~~~ 564 (574)
++++|...+.+..+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999988876544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.01 Score=60.48 Aligned_cols=196 Identities=10% Similarity=0.043 Sum_probs=125.9
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 046956 56 VHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEA 132 (574)
Q Consensus 56 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 132 (574)
+-..+.+.+-.+...++.++. ..+.|+.++|..+++... ..|..+...+-..|...|+.++|..+|++..+.
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLs---l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-- 106 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALS---LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-- 106 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHH---HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--
Confidence 344455555555555555555 568899999999888774 346778888889999999999999999998776
Q ss_pred CCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC----------hHHHHHHHccCCCCC-
Q 046956 133 VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE----------ISCARKVFDEMPERN- 201 (574)
Q Consensus 133 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~- 201 (574)
.|+......+..++.+.+++.+-.++--++.+. ++-....+-++++.....-. ..-|.+.++.+.+.+
T Consensus 107 ~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g 185 (932)
T KOG2053|consen 107 YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG 185 (932)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC
Confidence 567777778888888888877666555555543 45556666666666654321 234555666665533
Q ss_pred h-h---hHHHHHHHHHhcCChHHHHHHHhh-cC----CCCcchHHHHHHHHHccCChHHHHHHHh
Q 046956 202 V-V---SWTAMIVGYASVGDLVEAKTVFDL-MP----ERSNVSWNALIGGLVKIGDLRSARQLFD 257 (574)
Q Consensus 202 ~-~---~~~~li~~~~~~g~~~~a~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (574)
. . -.......+-..|++++|.+++.. .. ..+...-+.-+..+...+++.+..++..
T Consensus 186 k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 186 KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 1 1 111223344567888888888832 21 2233333445566666777766655555
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00015 Score=59.46 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc--HHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE---VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS--PEHYAC 473 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 473 (574)
.|..++..+ ..++...+...++.+.... +.+. .....+...+...|++++|...|+.+... ...|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344455555 3778888888888888753 2231 23444566788889999999999998875 32222 234455
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALLGACKLYSDIELGELVANRLF 527 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 527 (574)
+...+...|++++|+..++.....+ ....+......+...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7788888999999999998764333 34445555688899999999999988763
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.5e-06 Score=57.58 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 506 LLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 506 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 346678899999999999999999999999999999999999999999999998876543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-05 Score=67.97 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=86.7
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKL---YSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
.-+-|...|..|...|...|+.+.|...|.+. ...| ++..+..+..++.. ..+..++..+++++++++|.++.+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34556788888888888888888888888877 3444 34455555544432 3356788999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCcc
Q 046956 538 VLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCS 572 (574)
Q Consensus 538 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s 572 (574)
..|+..++..|++++|...|+.|.+.....+|..+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999999998887777654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-05 Score=60.93 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHH
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLL 540 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 540 (574)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|++++|...+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566777788888888888888877 22333 2345556678888888888888888888887775 5568888
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 541 SNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+.++...|++++|...++++.+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 8888888888888888888877654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=49.26 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCc
Q 046956 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDK 136 (574)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 136 (574)
+||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6788888888888888888888888888877763
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00033 Score=56.93 Aligned_cols=135 Identities=7% Similarity=0.041 Sum_probs=104.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHH
Q 046956 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---ASAW 503 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~ 503 (574)
..|+...-..|..+....|++.+|...|++...- -+.-|......+.++....+++.+|...++++ ...|. +...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777778888899999999999999998872 44566778888888899999999999988887 22222 2233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
..+...+...|.++.|+..|+.++...|+ +......+..+.++|+.+++..-+..+.+.-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 34557888899999999999999988887 6677777888899998888877665554433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=75.27 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=91.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 515 (574)
-...+...|++++|+..|+++++ ..+.+...|..+..+|.+.|++++|+..++++ ...| +...+..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34567788999999999999997 44556788889999999999999999999988 5556 46677778899999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (574)
+++|+..++++++++|+++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888877664444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-06 Score=47.77 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 046956 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP 134 (574)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 134 (574)
.+|+.++.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777766665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0001 Score=70.37 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=81.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
....+...|++++|+..|+++++. .|+ ...|..+..+|.+.|++++|+..+++++. ..+.+...|..++.+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 345667789999999999999984 454 55888888899999999999999999986 3444677888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 046956 482 GHLKSAYELLNSM-PVEPHASAWGALL 507 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~~p~~~~~~~l~ 507 (574)
|++++|+..|+++ ...|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999887 5666655554444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.9e-05 Score=63.58 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
.+..++..+...|++++|...|+++ ...|+ ...+..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444555555556666666655554 11121 234555566667777777777777777777777777777777777
Q ss_pred HhcCC--------------chHHHHHHHHHHhCC
Q 046956 545 ATADR--------------WLDVCLVRSKMKERG 564 (574)
Q Consensus 545 ~~~g~--------------~~~a~~~~~~~~~~~ 564 (574)
...|+ +++|.+.+++..+.+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 76665 455555555555433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00022 Score=71.19 Aligned_cols=140 Identities=15% Similarity=0.080 Sum_probs=96.8
Q ss_pred CCChhHHHHHHHHHHH--c---CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 046956 394 NRDVVSYCSMIKGLSI--H---GHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHV--------GLVEDGWRFFEAMQ 459 (574)
Q Consensus 394 ~~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 459 (574)
..+...|...+++... . ++.+.|..+|++.++ ..|+.. .+..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3566777777766443 2 236789999999998 567753 555544433221 12334444444443
Q ss_pred hhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 460 NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 460 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
.....+.++..|..+.-.....|++++|...++++ ..+|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32124445677877777777789999999999888 56778778888888899999999999999999999998875
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00017 Score=66.24 Aligned_cols=268 Identities=11% Similarity=0.034 Sum_probs=148.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 046956 270 MIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD-EFILVSLMSACSQVGN 345 (574)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 345 (574)
....+.+..++..|+..+....+ .+..-|..-+..+...|++++|+--.+.-.+. +|. .......-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 44556666777777777665443 34556666666777777777776655554432 221 1233333333333444
Q ss_pred cchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CChhHHHHHH-HHHHHcCChHHHHHH
Q 046956 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RDVVSYCSMI-KGLSIHGHGRQAVSL 419 (574)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li-~~~~~~~~~~~a~~~ 419 (574)
..+|...++.-. .+ ....|...++.+.. |....|..+- .++...|++++|...
T Consensus 133 ~i~A~~~~~~~~----------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 133 LIEAEEKLKSKQ----------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHhhhhh----------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 434433333100 00 11112222222221 2223333332 344566777777766
Q ss_pred HHHHHHCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHhhcCCCCcHHH-------------HHHHHHHHhhcCCH
Q 046956 420 FDRMLSEGLTPDEVAFTIVLT--ACSHVGLVEDGWRFFEAMQNVYAIVPSPEH-------------YACMVDLLGRTGHL 484 (574)
Q Consensus 420 ~~~m~~~g~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~l~~~~~~~g~~ 484 (574)
--...+. .++. .+..+++ ++...++.+.|...|++.++ +.|+... +..=.+-..+.|++
T Consensus 192 a~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 192 AIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 6655552 2221 2222222 34456677777777777663 2333211 11122334577888
Q ss_pred HHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 046956 485 KSAYELLNSM-PVEP-----HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 485 ~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
.+|.+.+.+. .+.| +...|........+.|+.++|+.-.+++++++|....+|..-+.++...++|++|.+.++
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888776 4333 444555555666778888888888888888888888888888888888888888888887
Q ss_pred HHHhCCCc
Q 046956 559 KMKERGLR 566 (574)
Q Consensus 559 ~~~~~~~~ 566 (574)
+..+....
T Consensus 346 ~a~q~~~s 353 (486)
T KOG0550|consen 346 KAMQLEKD 353 (486)
T ss_pred HHHhhccc
Confidence 77655433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.4e-05 Score=68.33 Aligned_cols=127 Identities=9% Similarity=0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHh---HhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAM---QNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-------PV-EPHAS 501 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 501 (574)
.|..|.+.|.-.|+++.|+...+.- .+.+|... ....+..+..+++-.|+++.|.+.++.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5566666666667777776554422 12223322 2355666777777777777777776553 11 12233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFEL------EPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
...++..+|.-..+++.|+.++.+=+.+ ......++..|+.+|...|..++|..+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4445666666666777777766655443 1234456677777777777777776665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.5e-06 Score=56.57 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=46.1
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...|++++|++.++++++.+|+++.++..++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678889999999999999999999999999999999999999998887776554
|
... |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=47.20 Aligned_cols=33 Identities=39% Similarity=0.777 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD 431 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 431 (574)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.9e-05 Score=68.29 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=96.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 515 (574)
=..-..+.+++.+|+..|.++++ -.+-|..-|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 34557788999999999999996 45556777888899999999999999998887 67775 5689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
+++|++.|+++++++|++......|-.+-...+...
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998888888777666655
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.2e-05 Score=62.61 Aligned_cols=92 Identities=8% Similarity=-0.175 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
...|..++..+...|++++|...|+++ ...|+ ..++..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777788888888887776 22222 3467778888999999999999999999999998888888888
Q ss_pred HHH-------hcCCchHHHHHHHH
Q 046956 543 IYA-------TADRWLDVCLVRSK 559 (574)
Q Consensus 543 ~~~-------~~g~~~~a~~~~~~ 559 (574)
++. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 888 78887755555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=46.45 Aligned_cols=33 Identities=33% Similarity=0.715 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 046956 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328 (574)
Q Consensus 296 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 328 (574)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998887
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00037 Score=64.13 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH-VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|..+|+...+ .++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467888888888888999999999998543 3344556555555333 5777779999999998 56667788888999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 477 LLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|.+...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999987 22333 3489999988899999999999999999988875443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.4e-05 Score=54.67 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
..|.+.++++.|++.++++++.+|+++..+...+.++...|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5678889999999999999999999999999999999999999999999998887665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00015 Score=54.35 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 046956 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIE 517 (574)
Q Consensus 440 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 517 (574)
..+...|++++|...++.+.+ ..+.+...+..++..+...|++++|.+.++.. ...| +...+..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444444444444443 11222233444444444445555555544443 1122 2234444445555555555
Q ss_pred HHHHHHHHHHhhCC
Q 046956 518 LGELVANRLFELEP 531 (574)
Q Consensus 518 ~a~~~~~~~~~~~p 531 (574)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 55555555555444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=58.23 Aligned_cols=91 Identities=10% Similarity=0.007 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 472 ACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
.....-+...|++++|..+|+-+ ...| +..-|..+...+...+++++|+..|..+..+.++||...+..+.+|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34455567889999999998877 2233 555677777888889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHh
Q 046956 550 WLDVCLVRSKMKE 562 (574)
Q Consensus 550 ~~~a~~~~~~~~~ 562 (574)
.++|...|...++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887776
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00063 Score=57.73 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHH
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD--EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYAC 473 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 473 (574)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...++++.+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344667777777788888888888888776432222 246777777788888888888888887762 3334556666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
++.++...|+...+..-++.. ...+++|.+.++++++.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777666555433321 123678889999999988887 4444444554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.1e-05 Score=51.50 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=48.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 474 MVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
++..+...|++++|.+.|+++ ...|+ ...+..+..++...|++++|+..++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 466778888889998888887 55564 55677777888999999999999999999999875
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.1e-05 Score=55.01 Aligned_cols=80 Identities=16% Similarity=0.291 Sum_probs=40.9
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHH
Q 046956 410 HGHGRQAVSLFDRMLSEGLT-PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 487 (574)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ . ...+ +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666653211 1223344456666666666666666665 2 1112 223333445666666666666
Q ss_pred HHHHHh
Q 046956 488 YELLNS 493 (574)
Q Consensus 488 ~~~~~~ 493 (574)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00081 Score=67.18 Aligned_cols=135 Identities=15% Similarity=0.061 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhc--------CCHHHHHHHHH
Q 046956 427 GLTPDEVAFTIVLTACSH--V---GLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRT--------GHLKSAYELLN 492 (574)
Q Consensus 427 g~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 492 (574)
+.+.+...|...+.+... . +....|..+|+++.+. .|+ ...|..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 346677788888887443 2 3477899999999963 455 45555554444322 22344555555
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 493 SM----PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 493 ~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+. ....++..+..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.+++...-+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 1233456677676666678999999999999999999 588999999999999999999999999887664
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.031 Score=51.53 Aligned_cols=272 Identities=19% Similarity=0.215 Sum_probs=173.7
Q ss_pred cCChHHHHHHHhhC---CCCCHhHHHHHHHH--HHhCCCchHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCcchH
Q 046956 277 VGDMTSARSLFEAA---PDRDVVAWSALISG--YAQNGQPDEAVKIFSDMCSKNVQPDEFI--LVSLMSACSQVGNLDLS 349 (574)
Q Consensus 277 ~g~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a 349 (574)
.|+-..|.+.-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|... |.... ...|...-.+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 45555555554332 23344444334333 33468888888888888752 32221 22233333567777888
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC-----CCChh--HHHHHHHHHH---HcCChHHHHHH
Q 046956 350 NWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP-----NRDVV--SYCSMIKGLS---IHGHGRQAVSL 419 (574)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~~~~~~a~~~ 419 (574)
+++-+..-....... ......+...+..|+++.|+++++.-. ++++. .-..|+.+-. -..+...|...
T Consensus 174 r~yAe~Aa~~Ap~l~--WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 174 RHYAERAAEKAPQLP--WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHhhccCCc--hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 887777665544433 257778888888899999999887654 34432 1222332221 12345666666
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----
Q 046956 420 FDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---- 494 (574)
Q Consensus 420 ~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 494 (574)
-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+... .-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta~--dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDTAL--DRLKRAKKLE 322 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcHH--HHHHHHHHHH
Confidence 666555 677765 4445567889999999999999999854 5666555433 3445565332 222222
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 046956 495 PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA-DRWLDVCLVRSKMKER 563 (574)
Q Consensus 495 ~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 563 (574)
..+|| ......+..+....|++..|..-.+.+....|. ..+|..|+++-... ||-.++...+.+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 23454 455566668888999999999999999999988 67888888887665 9999999998877653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.035 Score=51.76 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=26.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHH
Q 046956 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223 (574)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 223 (574)
+|..+.......|+.+-|..+++.=+.+ ..-+-.+.+.|+.+.|+.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~-----~~qVplLL~m~e~e~AL~ 47 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRA-----SKQVPLLLKMGEDELALN 47 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCCh-----HHHHHHHhcCCchHHHHH
Confidence 3555666666778888887777653321 112344555566555543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0023 Score=54.06 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD--EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 474 (574)
...|..+...+...|++++|+..|++.......+. ..++..+...+...|++++|...++++... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566666677777888888888877766422221 236667777777778888888887777752 23334445555
Q ss_pred HHHHh
Q 046956 475 VDLLG 479 (574)
Q Consensus 475 ~~~~~ 479 (574)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.4e-05 Score=45.12 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=31.0
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHH
Q 046956 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (574)
.|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.7e-05 Score=43.59 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCC
Q 046956 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIREE 131 (574)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 131 (574)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 357777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0029 Score=50.97 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=63.9
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 369 IAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
...+...+...|++++|..+|+.+.. .+..-|-.|..++...|++++|+..|....... +-|+..+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 34455556667777777777776652 244566677777777777788887777777743 23445677777777777
Q ss_pred CcHHHHHHHHHHhHhhcC
Q 046956 446 GLVEDGWRFFEAMQNVYA 463 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~ 463 (574)
|+.+.|.+.|+..+...+
T Consensus 117 G~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 117 DNVCYAIKALKAVVRICG 134 (157)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 777777777777776543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0046 Score=57.19 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=10.0
Q ss_pred HHHHHHhCCCchHHHHHHHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDM 321 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m 321 (574)
....|-..|++++|.+.|.+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH
Confidence 344455555555555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0014 Score=60.31 Aligned_cols=125 Identities=9% Similarity=0.047 Sum_probs=64.1
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHH----HCCCC-CCHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---------RDVVSYCSMIKGLSIHGHGRQAVSLFDRML----SEGLT-PDEV 433 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~-p~~~ 433 (574)
.|..|.+.|.-.|+++.|+..-+.-.. .....+..+..+++-.|+++.|.+.|+... +.|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455556666666666666654432210 112345566666666777777777766533 22211 1123
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhh----cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNV----YAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (574)
...+|.+.|.-..++++|+.++.+-... ....-....+..|..++...|..++|+.+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4455666666666666666666543321 0111123344455555555555555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00042 Score=62.49 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=39.3
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDI 516 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~ 516 (574)
.+.|++++|...|+.+.+.+.-.+ .+..+..++.+|...|++++|...|+.+ ...|+ ...+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555554211000 0133444445555555555555555444 11111 22233333444444555
Q ss_pred HHHHHHHHHHHhhCCCCc
Q 046956 517 ELGELVANRLFELEPQNA 534 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~ 534 (574)
+.|...|+++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 555555555555555443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.042 Score=50.68 Aligned_cols=257 Identities=16% Similarity=0.116 Sum_probs=165.5
Q ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCcchHHHHHHHHHHhCCCCChhhHHHHH
Q 046956 297 AWSALISGYAQ--NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC--SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372 (574)
Q Consensus 297 ~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 372 (574)
.|..|-.++.. .|+-..|.++-.+..+. +..|..-...++.+- .-.|+.+.+.+-|+.|...... ... -...|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEt-Rll-GLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPET-RLL-GLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHH-HHH-hHHHH
Confidence 45555555544 56666776666554432 455666666666654 4579999999999999752111 111 12334
Q ss_pred HHHhHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh---
Q 046956 373 VDMNAKCGNMDRAAELFETMPN--RD-VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEV--AFTIVLTACS--- 443 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--~~~~l~~~~~--- 443 (574)
.-.-.+.|+.+.|..+-+..-. |. ...+...+...+..|+++.|+++.+.-.+.. +.++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 4444678999999888877653 32 3578889999999999999999999766532 455543 2333333211
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH-H
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPE-HYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELG-E 520 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a-~ 520 (574)
-..+...|...-.+.. ++.|+.. .--.-..++.+.|+..++-++++.+ +.+|.+..+.... ..+.|+.... .
T Consensus 241 ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRl 315 (531)
T COG3898 241 LDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRL 315 (531)
T ss_pred hcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHH
Confidence 1234455555444443 5566632 2334467899999999999999998 7778877664332 3355554322 2
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 521 LVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+-.+++..+.|++......++..-...|++..|..--+...
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 23344455689999999999999999999988776554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.011 Score=52.94 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=104.7
Q ss_pred HHHHHhHhcCCHHHHHHHHhhCCC--CCh-hH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 046956 371 ALVDMNAKCGNMDRAAELFETMPN--RDV-VS---YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTAC 442 (574)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~ 442 (574)
..+..+...|++++|.+.|+.+.. |+. .. .-.++.++.+.+++++|...+++.++. .|+. .-+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 345555667888888888877763 322 11 234566777888888888888888874 3332 2333333322
Q ss_pred h--ccC---------------c---HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 046956 443 S--HVG---------------L---VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASA 502 (574)
Q Consensus 443 ~--~~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 502 (574)
+ ..+ + ...|...|+.+++. . |+ ..-..+|.+.+..+...-- ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~-------------S~ya~~A~~rl~~l~~~la-~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PN-------------SQYTTDATKRLVFLKDRLA-KY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--C-cC-------------ChhHHHHHHHHHHHHHHHH-HH
Confidence 2 111 1 23344555555542 2 22 2223344433333311100 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 503 WGALLGACKLYSDIELGELVANRLFELEPQNA---GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
-..+...|.+.|.+..|+.-++.+++..|+.+ .++..++.+|...|..++|..+.+.+..
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 11344678899999999999999999988765 5677888999999999999998876653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.027 Score=52.35 Aligned_cols=262 Identities=16% Similarity=0.035 Sum_probs=137.2
Q ss_pred HHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHccCChHHH
Q 046956 179 DLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER---SNVSWNALIGGLVKIGDLRSA 252 (574)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 252 (574)
..+.+..++..|+..+....+ .+..-|..-+..+...|++++|.--.+.-.+. ......-.-+++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 455566667777776665543 34445556666666677777776655444332 233344445555555555556
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCHhHHHHH-HHHHHhCCCchHHHHHHHHHHHCCC
Q 046956 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD-----RDVVAWSAL-ISGYAQNGQPDEAVKIFSDMCSKNV 326 (574)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~ 326 (574)
.+.++.- ..+ ....++..++.+.. |.-..|..+ ..++.-.|+.++|.+.--..++..
T Consensus 137 ~~~~~~~-----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld- 199 (486)
T KOG0550|consen 137 EEKLKSK-----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD- 199 (486)
T ss_pred HHHhhhh-----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-
Confidence 5555411 000 11112222222221 111223322 234555666766666555554432
Q ss_pred CCCHHHHHHHHH--HHhccCCcchHHHHHHHHHHhCCCCChhh----------HHHHHHHHhHhcCCHHHHHHHHhhCCC
Q 046956 327 QPDEFILVSLMS--ACSQVGNLDLSNWVDSYLSRSHMDLSRAH----------VIAALVDMNAKCGNMDRAAELFETMPN 394 (574)
Q Consensus 327 ~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (574)
+ ...+..+++ ++...++.+.+...+.+.++.++...... ....-++-..+.|++..|.+.|.+...
T Consensus 200 -~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 200 -A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred -c-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 1 112222222 23345556666666666665554433221 112223445667778888887777663
Q ss_pred -------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 395 -------RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 395 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
++...|.....+..+.|+..+|+.--++... +.|... .|..-..++...++|++|.+-++++.+.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566666666777777777777776665 334332 4444455666677777777777777654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.2e-05 Score=51.50 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=28.1
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS 501 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 501 (574)
..|++++|.++|+++.. ..+-+...+..++.+|.+.|++++|.++++++ ...|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 34555555555555554 22334444555555555555555555555555 3334433
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00079 Score=61.96 Aligned_cols=129 Identities=11% Similarity=0.073 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR-TGHLKSAYELLNSM--PVEPHASAWGALLGA 509 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 509 (574)
.+|..++....+.+..+.|..+|.++.+ ....+..+|...+..-.. .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4688888889999999999999999985 333455667766666445 56677799999988 344567788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 510 CKLYSDIELGELVANRLFELEPQNA---GSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+...|+.+.|..+|++++..-|.+. .+|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999866644 58888999889999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.047 Score=50.94 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=79.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHH
Q 046956 173 VGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSA 252 (574)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 252 (574)
+.+..|.-+...|+...|.++..+..-||..-|...+.+++..++|++-..+... +.++..|-..+.+|.+.|...+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 4455566667778888888888888778888888888888888888887776554 45677888888888888888888
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 046956 253 RQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLF 287 (574)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 287 (574)
......+ .+..-+..|.++|++.+|.+.-
T Consensus 257 ~~yI~k~------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 257 SKYIPKI------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHhC------ChHHHHHHHHHCCCHHHHHHHH
Confidence 7777764 2245567777777777776653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=9.5e-05 Score=41.85 Aligned_cols=30 Identities=33% Similarity=0.611 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGL 428 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 428 (574)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00022 Score=49.70 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYS-DIELGELVANRLFELEP 531 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 531 (574)
++..|..++..+...|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777778888888888888888776 44554 556777778888888 68899999999988887
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=50.67 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHhcCCchHHHHHH
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQ---NAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
.+..++...|++++|+.++++.....|+ +......++.++...|+.++|...+
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344555555555555555555555454 3444444445555555555555544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00096 Score=49.64 Aligned_cols=80 Identities=9% Similarity=0.062 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcchHHHHHHHHhccC--------CcHHHHHHHHHHHHhCCCCCcchH
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEA-VPDKYTFPLVIKACSHVL--------SVREGTAIHAAVIRWGVDEDVFVG 174 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 174 (574)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677778999999999999999999 899999999999877543 244667889999999999999999
Q ss_pred HHHHHHHHc
Q 046956 175 TSLIDLYGK 183 (574)
Q Consensus 175 ~~li~~~~~ 183 (574)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0053 Score=56.81 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-C----CH
Q 046956 434 AFTIVLTACSHV-GLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSMP---VE-P----HA 500 (574)
Q Consensus 434 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-p----~~ 500 (574)
++..+...|... |++++|.+.|+++...+..... ..++..++..+.+.|++++|.++|++.. .+ + +.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455566677777 8888888888887764322222 3456677888889999999999988761 11 1 11
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-----hhHHHHHHHHHhcCCch
Q 046956 501 S-AWGALLGACKLYSDIELGELVANRLFELEPQNA-----GSYVLLSNIYATADRWL 551 (574)
Q Consensus 501 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~ 551 (574)
. .+...+-.+...||...|.+.+++....+|.-. .....|+.++ ..||.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e 251 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVE 251 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHH
Confidence 1 222233455677899999999999888877532 2344555543 344433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00026 Score=43.93 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
.++..+...|...|++++|++.++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778899999999999999999999999999999988875
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.01 Score=51.42 Aligned_cols=136 Identities=10% Similarity=0.049 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhc----CCCCcHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY----AIVPSPEHYACM 474 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 474 (574)
+-+.++..+...|.+.-...++.+.++...+-++.....|++.-.+.|+.+.|..+|+...+.. +..-+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3355666666677777788888888876544556677777777888888888888888665431 222223333334
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 475 VDLLGRTGHLKSAYELLNSMP-VEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
...|.-++++.+|...+.++. .+| ++...+.-.-...-.|+...|++..+.+++..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 445666777777777777762 222 344444444444556777888888888887777643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.024 Score=53.34 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=96.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNR-------DVVSYCSMIKGLSI---HGHGRQAVSLFDRMLSEGLTPDEVAFTI 437 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 437 (574)
+...++-.|-...+++...++++.+... ....-....-++.+ .|+.++|+.++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3444555566677777777777766642 11122223344445 6777888888777555555666677776
Q ss_pred HHHHHhc---------cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHH----HHHHHH---HhC-------
Q 046956 438 VLTACSH---------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLK----SAYELL---NSM------- 494 (574)
Q Consensus 438 l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~------- 494 (574)
+...|-. ....++|...|.+.-+ +.|+...=-.++..+...|... +..++- ..+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 6665421 1235667777766543 3344322223333343444321 222222 111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 495 PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 495 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
....+...+.+++.++.-.||++.|.+.++++.++.|+.-
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1235677778888999999999999999999999987744
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.15 Score=50.81 Aligned_cols=231 Identities=16% Similarity=0.114 Sum_probs=117.4
Q ss_pred CCCcchHHHHHHHHHcCCChHHHHHHHccCCC-CCh------------hhHHHHHHHHHhcCChHHHHHHHhhcCCCCcc
Q 046956 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-RNV------------VSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234 (574)
Q Consensus 168 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 234 (574)
.|.+..|..|.......-+++.|+..|-+... +.+ ..-.+-|.+| -|++++|.++|-.|.+.|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 46666777776666655566666666554433 111 1111122222 3777777777777665553
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcCC--CC---chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCC
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEMP--ER---NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 309 (574)
.+....+.|++-...+++..-. .. -...|+.+.+.+.....+++|.+.|...... ...+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHH
Confidence 3445556667666666666210 11 1346677777777777777777766554321 12344444444
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHH
Q 046956 310 QPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389 (574)
Q Consensus 310 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 389 (574)
++++-..+.+.+ +-+....-.+...+.+.|--++|.+.+-+.. .-...+..|...++|.+|.++-
T Consensus 837 ~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----------~pkaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 837 LFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----------LPKAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----------CcHHHHHHHHHHHHHHHHHHHH
Confidence 444444333332 2233344444555555555555444332211 1122344555556666666665
Q ss_pred hhCCCCChhHHHH--------------HHHHHHHcCChHHHHHHHHHHHH
Q 046956 390 ETMPNRDVVSYCS--------------MIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 390 ~~~~~~~~~~~~~--------------li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
+...-|.+.+.-+ -|..+.+.|++-+|-+++.+|.+
T Consensus 902 q~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 902 QRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 5554333322111 13344555666666666666654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.11 Score=48.93 Aligned_cols=134 Identities=15% Similarity=0.151 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
..+|...+....+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-.. .++.+..--+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 3456667777777777888888888888877 5566667777776554 4777788888887665 3433333334566
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 476 DLLGRTGHLKSAYELLNSM--PVEPH--ASAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
..+.+.|+-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+..|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6777888888888888855 12222 4577777777777788887777777777777764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0035 Score=56.59 Aligned_cols=97 Identities=10% Similarity=0.009 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHH
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA----SAWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLL 540 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 540 (574)
..|..-...+.+.|++++|+..|+.+ ...|+. ..+.-+...|...|++++|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34554444456678888888888777 333432 345556677888888888888888888877764 4566667
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 541 SNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+.++...|++++|..+++++++..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 7888888888888888888876543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.15 Score=50.20 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=106.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNR---DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..-+..-.+.|+.+.+.-+|+.+.-| -...|-..+.-....|+.+-|..++....+--++-.+.+-..-...+-.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 4444555555666666666666665532 2235555555555557777777777666554333333222222223455
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHHHhcC
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAY---ELLNSM-PVEPHASAWGALL-----GACKLYS 514 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~~~~ 514 (574)
.|+++.|..+++.+... . |+ ...-..-+....+.|+.+.+. +++... ..+-+......+. ..+...+
T Consensus 379 ~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred hccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 67888888888888874 3 44 233333455566778887777 444433 2222222222221 2345567
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
+.+.|..++.++.+..|++...|..+.......+
T Consensus 456 d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 456 DADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 8889999999999999998888888888776665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0046 Score=48.01 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=62.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHh
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLG 479 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 479 (574)
+..++-..|+.++|+.+|++..+.|+.... ..+..+...+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455666778888888888888888766553 3666777788888888888888888876421101 2223333445677
Q ss_pred hcCCHHHHHHHHHh
Q 046956 480 RTGHLKSAYELLNS 493 (574)
Q Consensus 480 ~~g~~~~A~~~~~~ 493 (574)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888876644
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.011 Score=52.80 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCC-HHHH
Q 046956 429 TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG---HLKSAYELLNSM-PVEPH-ASAW 503 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~-~~~~ 503 (574)
+-|...|..|...|...|+.+.|...|....+ -.++++..+..+..++.... ...++.++|+++ ..+|+ ....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 44556999999999999999999999999987 45566677777777665432 567788999888 55564 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
..+...+...|++.+|...++.+++..|.+..-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 555688999999999999999999998765543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00085 Score=63.56 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS----AWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+...++.+..+|...|++++|+..|++. ..+|+.. +|.++..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566667777777777777777777664 5556532 3666667777777777777777777776
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0036 Score=46.71 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHhhcCCCCcHHHH
Q 046956 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPDEVAFTIVLTACSHVG--------LVEDGWRFFEAMQNVYAIVPSPEHY 471 (574)
Q Consensus 401 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 471 (574)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+..+.. .+-..+.+|+.+... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4456666677999999999999999999 899999999998866542 345678889999987 899999999
Q ss_pred HHHHHHHhh
Q 046956 472 ACMVDLLGR 480 (574)
Q Consensus 472 ~~l~~~~~~ 480 (574)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.21 Score=50.40 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=35.8
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC---ChHHHHHHHccCCC--CChhhHHHHHHHHHhcCC
Q 046956 143 IKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK---EISCARKVFDEMPE--RNVVSWTAMIVGYASVGD 217 (574)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~ 217 (574)
+.-+...+.+..|.++-..+-..-... ..+|.....-+.+.. +-+.+..+-+++.. ....+|..+.+.....|+
T Consensus 444 i~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 334444555555555554442111011 334444444444332 22223333333333 233445555555555555
Q ss_pred hHHHHHHHhh
Q 046956 218 LVEAKTVFDL 227 (574)
Q Consensus 218 ~~~a~~~~~~ 227 (574)
.+-|..+++.
T Consensus 523 ~~LA~kLle~ 532 (829)
T KOG2280|consen 523 FELARKLLEL 532 (829)
T ss_pred HHHHHHHHhc
Confidence 5555555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00042 Score=49.70 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFEL----EPQ---NAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.++..+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566667777888888888888877764 222 245677888888888888888888877653
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00092 Score=47.17 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=51.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 046956 475 VDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (574)
...|.+.+++++|.++++.+ ...|+ ...|......+...|++++|.+.++++++..|+++.......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35677888888888888887 44554 455666778888999999999999999999998777655443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.02 Score=56.20 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=48.0
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhH
Q 046956 218 LVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVA 297 (574)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 297 (574)
.+-+.++-+++...+..+...+..-+.+...+..|.++|..|. -...++.++...+++++|..+-++.++--...
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-----D~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG-----DLKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc-----cHHHHhhheeecccchHhHhhhhhCccccccc
Confidence 3344444444444444444444444455555555555555441 12234555555666666666665555422222
Q ss_pred HHHHHHH-------------HHhCCCchHHHHHHHHHH
Q 046956 298 WSALISG-------------YAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 298 ~~~li~~-------------~~~~~~~~~A~~~~~~m~ 322 (574)
|....+. |.+.|+-.+|..+++++.
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3333333 444555555555555554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0053 Score=51.99 Aligned_cols=98 Identities=20% Similarity=0.334 Sum_probs=78.5
Q ss_pred HHHHhhC--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 046956 386 AELFETM--PNRDVVSYCSMIKGLSI-----HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG------------ 446 (574)
Q Consensus 386 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------------ 446 (574)
.+.|+.. ...+-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 34667777778877764 4778888888999999999999999999999876532
Q ss_pred ----cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH
Q 046956 447 ----LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484 (574)
Q Consensus 447 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 484 (574)
+.+-|++++++|... |+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 456789999999986 9999999999999999887753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0041 Score=57.68 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-PV-EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
.++..++.++.+.+++.+|++...+. .. .+|...+..-..++...|+++.|+..|++++++.|+|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45777888999999999999988877 33 34677777788999999999999999999999999999999999888777
Q ss_pred cCCchHH-HHHHHHHHhC
Q 046956 547 ADRWLDV-CLVRSKMKER 563 (574)
Q Consensus 547 ~g~~~~a-~~~~~~~~~~ 563 (574)
..++.+. .+.|..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6666554 7888888654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.13 Score=46.22 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCcchHHHHHHHHHHhCCC
Q 046956 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFI---LVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362 (574)
Q Consensus 300 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (574)
.....+...|++++|.+.|+++...-..+ ... ...+..++.+.++.+.|...++...+..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 34444555666666666666665542111 111 123344555566666666666655554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.038 Score=48.24 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=88.3
Q ss_pred HHHHHhHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 046956 371 ALVDMNAKCGNMDRAAELFETMPN--RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTAC 442 (574)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~ 442 (574)
..+..+...|++.+|.+.|+.+.. |+ ....-.++.++.+.|++++|...+++.++. -|+. ..+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 344445555666666666666552 21 124445566677777777777777777663 2332 1222222111
Q ss_pred h-------------ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046956 443 S-------------HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGA 509 (574)
Q Consensus 443 ~-------------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 509 (574)
+ ..+...+|...|+.+++ -|=......+|.+.+..+...- ...-..+...
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1 11122334444444443 3333334444444443331000 0111124477
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCchHHH
Q 046956 510 CKLYSDIELGELVANRLFELEPQNAG---SYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 554 (574)
|.+.|.+..|..-++.+++..|+++. +...++..|.+.|..+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88999999999999999999998765 5677888999999988544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0062 Score=58.46 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCC--CChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----CChh
Q 046956 325 NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD--LSRAHVIAALVDMNAKCGNMDRAAELFETMPN----RDVV 398 (574)
Q Consensus 325 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 398 (574)
+.+.+...+..++..+....+++.+..++.+....... ..+. +..++++.|.+.|..+.+.++++.=.. ||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~-t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPS-THHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCc-cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34456666666666666666666666666665544211 1112 344566666666666666665554432 5555
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
++|.+++.+.+.|++..|.++...|...+...+..|+..-+.+|.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666666555555544444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.043 Score=42.24 Aligned_cols=141 Identities=14% Similarity=0.166 Sum_probs=87.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
..-.|..++..++..+... ..+..-++.++.-....-+-+-..+.++..-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 3456788888888888776 234455666665555544555555555555442222 23344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
....+-.+. .+.......+..+..+|.-++-.+++..+.+.+..+|..+..++.+|.+.|+..++-++++++-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444432 244556666788899999999999999988877778999999999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.11 Score=42.90 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=35.3
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc
Q 046956 372 LVDMNAKCGNMDRAAELFETMPN----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD---EVAFTIVLTACSH 444 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~ 444 (574)
|.....+.|+..+|...|++... .|....-.+..+....+++..|...++++.+.. |. +.+...+...+..
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHHh
Confidence 44444444444444444444331 233333344444444444444444444444321 11 1122233334444
Q ss_pred cCcHHHHHHHHHHhH
Q 046956 445 VGLVEDGWRFFEAMQ 459 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~ 459 (574)
.|.+.+|...|+...
T Consensus 173 ~g~~a~Aesafe~a~ 187 (251)
T COG4700 173 QGKYADAESAFEVAI 187 (251)
T ss_pred cCCchhHHHHHHHHH
Confidence 444444444444444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.014 Score=46.19 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=64.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHH
Q 046956 473 CMVDLLGRTGHLKSAYELLNSM----PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAG---SYVLLSNIY 544 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~ 544 (574)
.-+....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.++++|.++. ++...+-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3455566788888888888887 2222 2344556678889999999999999999999888765 455555556
Q ss_pred HhcCC---------------chHHHHHHHHHHhC
Q 046956 545 ATADR---------------WLDVCLVRSKMKER 563 (574)
Q Consensus 545 ~~~g~---------------~~~a~~~~~~~~~~ 563 (574)
..... ..+|...|++++++
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 66554 56677777776653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0058 Score=58.65 Aligned_cols=70 Identities=9% Similarity=0.141 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchH
Q 046956 105 NTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVG 174 (574)
Q Consensus 105 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 174 (574)
.++++.|...|..+.++.++..=...|+-||..+++.|+..+.+.|++..|.++...|...+.-.+..++
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 3444444555555555555444444444455555555555555555555554444444444433333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.37 Score=48.24 Aligned_cols=213 Identities=14% Similarity=0.058 Sum_probs=125.7
Q ss_pred ChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC-CCCC--------CcchHHHHHHHHhccCCcHHH
Q 046956 85 PLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIRE-EAVP--------DKYTFPLVIKACSHVLSVREG 155 (574)
Q Consensus 85 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~a 155 (574)
.+++|.+..+.- |-+..|..+.......-.++-|...|-+...- |++. +...-.+ ..-+--|++++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHh
Confidence 355555555543 33445666655555554555555544433221 1110 0000001 112234778888
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--C---ChhhHHHHHHHHHhcCChHHHHHHHhhcCC
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--R---NVVSWTAMIVGYASVGDLVEAKTVFDLMPE 230 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 230 (574)
++++-++.++. ..|.++.+.||+-...++++.-.. . -..+|+.+...+.....|++|.+.|..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88777665543 346677777787777777765332 1 234677888888888888888887765432
Q ss_pred CCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCC
Q 046956 231 RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQ 310 (574)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 310 (574)
....+.++.+..++++-+.+...+ +.+....-.+.+++.+.|.-++|.+.|-+...|.. -+..|...++
T Consensus 825 -----~e~~~ecly~le~f~~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQ 893 (1189)
T KOG2041|consen 825 -----TENQIECLYRLELFGELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQ 893 (1189)
T ss_pred -----hHhHHHHHHHHHhhhhHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHH
Confidence 123456666666777766666666 66667777788888888888888777766555432 2344566677
Q ss_pred chHHHHHHHHH
Q 046956 311 PDEAVKIFSDM 321 (574)
Q Consensus 311 ~~~A~~~~~~m 321 (574)
|.+|.++-+..
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 77777766553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0035 Score=53.09 Aligned_cols=70 Identities=9% Similarity=0.127 Sum_probs=47.0
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHhc----------------cCCcHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046956 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSH----------------VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180 (574)
Q Consensus 117 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 180 (574)
.+=....+..|.+-|+.-|..+|+.||..+=+ ..+.+-|++++++|...|+-||..++..|++.
T Consensus 68 VeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~i 147 (228)
T PF06239_consen 68 VEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNI 147 (228)
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 33334444555555555555555555554322 12356788999999999999999999999999
Q ss_pred HHcCCC
Q 046956 181 YGKRKE 186 (574)
Q Consensus 181 ~~~~g~ 186 (574)
+++.+.
T Consensus 148 FG~~s~ 153 (228)
T PF06239_consen 148 FGRKSH 153 (228)
T ss_pred hccccH
Confidence 987664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.052 Score=53.42 Aligned_cols=39 Identities=8% Similarity=0.121 Sum_probs=20.8
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHH
Q 046956 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160 (574)
Q Consensus 119 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 160 (574)
+.+.-+++|++.|-.|+... +...|+-.|.+.+|.++|.
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH
Confidence 33444555666665555432 2334555666666666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.021 Score=46.91 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
....++..+...|++++|+..+++++..+|-+-.++..++.+|...|+..+|.++|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455566778889999999999999999999999999999999999999999999998875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.052 Score=47.37 Aligned_cols=140 Identities=11% Similarity=0.096 Sum_probs=71.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHh
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLT-PD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLG 479 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 479 (574)
....+...|++++|...|+++...-.. |- ......++.++.+.|+++.|...++..++.+.-.|.. ..+-.++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455566666666666666653111 11 1244455556666666666666666666543222221 11111111111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-----------------HHHHHH
Q 046956 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS-----------------YVLLSN 542 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~ 542 (574)
.. ..... ......+...+|...++.+++..|+++.. -..++.
T Consensus 91 ~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 91 KQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 00000 00122334567888888888888887543 235688
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 046956 543 IYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~ 563 (574)
.|.+.|.+..|..-++.+++.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999998864
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.078 Score=47.36 Aligned_cols=120 Identities=11% Similarity=0.072 Sum_probs=67.9
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 046956 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGA---LLGACKLYSDIE 517 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 517 (574)
.....|++.+|...|+.... ..+-+...-..++.+|...|+.+.|..++..++.+-....+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556777777777776665 2333345555667777777777777777777643332222222 122233333222
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+... +++-...+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 23334457777777777777777777777777666555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.085 Score=50.59 Aligned_cols=143 Identities=13% Similarity=0.141 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 413 GRQAVSLFDRMLS-EGLTPDEV-AFTIVLTACSH---------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 413 ~~~a~~~~~~m~~-~g~~p~~~-~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
.+.|+.+|.+... ..+.|+.. .|..+..++.. ..+..+|.++-++..+ --+-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4567778888772 12566643 55555444322 2345566777777775 4455677777777777888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH--HHHhcCCchHHHHHH
Q 046956 482 GHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN--IYATADRWLDVCLVR 557 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~ 557 (574)
|+++.|...|++. ...|| ...|......+.-.|+.++|.+.++++++++|....+-..-.+ +|+..+ .++|..++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8888888888887 56676 4455555566777888999999999998988876654443333 444444 46666655
Q ss_pred H
Q 046956 558 S 558 (574)
Q Consensus 558 ~ 558 (574)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0025 Score=45.63 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM-------P-VEPH-ASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+++.+...|...|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444444444444444444444433 1 0111 334555556666777777777777766654
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.006 Score=56.61 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
..++.++...+.+.+++..|++...++++++|+|..+++.-+.+|...|+++.|+..|+++.+..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 356677778889999999999999999999999999999999999999999999999999987554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.75 E-value=1.7 Score=50.37 Aligned_cols=312 Identities=9% Similarity=0.057 Sum_probs=162.6
Q ss_pred HHHHHHHccCChHHHHHHHhc----CCCC--chhHHHHHHHHHHhcCChHHHHHHHhh-CCCCCHhHHHHHHHHHHhCCC
Q 046956 238 ALIGGLVKIGDLRSARQLFDE----MPER--NVVSYTTMIDGYAKVGDMTSARSLFEA-APDRDVVAWSALISGYAQNGQ 310 (574)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 310 (574)
.+..+-.+.+.+..|...++. ..+. ....+..+...|+..+++|....+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 344455566667777776664 1111 123344455577777777777666653 333322 223445566788
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHh
Q 046956 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFE 390 (574)
Q Consensus 311 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 390 (574)
+..|...|+.+.+.+ ++...+++.++......|.++...-..+-......+.... .++.=+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~-~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDE-LNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHH-HHHHHHHHHhhhcchhhhhhhhh
Confidence 888888888887653 2235566666666666666666555444433322222222 34444455577778877777666
Q ss_pred hCCCCChhHHHHH--HHHHHHcCChH--HHHHHHHHHHHC--------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHH
Q 046956 391 TMPNRDVVSYCSM--IKGLSIHGHGR--QAVSLFDRMLSE--------GLTPDE-VAFTIVLTACSHVGLVEDGWRFFEA 457 (574)
Q Consensus 391 ~~~~~~~~~~~~l--i~~~~~~~~~~--~a~~~~~~m~~~--------g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 457 (574)
..+...|... +....+..+-+ .-.+..+.+.+. +..-+. ..|..++....-. +.+.-.+.+.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~- 1617 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK- 1617 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh-
Confidence 4444455443 22222222111 111222222221 111111 1333333322211 1111111111
Q ss_pred hHhhcCCCCcH------HHHHHHHHHHhhcCCHHHHHHHHHhC----CCC-----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 458 MQNVYAIVPSP------EHYACMVDLLGRTGHLKSAYELLNSM----PVE-----PHASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 458 ~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
++.++. ..|..-+..-....+..+-+--+++. ..+ --..+|....+..+..|+++.|...
T Consensus 1618 -----~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1618 -----KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred -----ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 222221 12222221111111122222222221 112 1356788888888899999999988
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
.-.+.+.. -+.++...++.+...|+...|..++++..+.+..
T Consensus 1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 88877776 4677888899999999999999999998876653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.037 Score=52.97 Aligned_cols=119 Identities=12% Similarity=0.073 Sum_probs=88.7
Q ss_pred cHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 046956 447 LVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGR---------TGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYS 514 (574)
Q Consensus 447 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 514 (574)
..+.|..+|.++.......|+ ...|..+..++.. .....+|.+..++. ...| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788888888843345555 4555555544432 22345566666665 4444 5666666777778888
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+++.|...|++++.++|+.+.++...++...-.|+.++|.+.+++..+-.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999998766554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.041 Score=49.69 Aligned_cols=157 Identities=13% Similarity=0.024 Sum_probs=80.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHH----HHHHHHHhhcCCHH
Q 046956 410 HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHY----ACMVDLLGRTGHLK 485 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~ 485 (574)
.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.....++++.. ...++...| ..+.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35555555566666553 344444555555566666666666666666554 333333222 23334445666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----chhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 486 SAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN----AGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 486 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
+|.+.-++. ++++ |.....++...+...|+..++.++..+-...-..+ ...|-..+-.+.+.+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666655 3333 44455555555666666666666555433221110 11233444455556666666666665
Q ss_pred HHhCCCccCC
Q 046956 560 MKERGLRKIP 569 (574)
Q Consensus 560 ~~~~~~~~~~ 569 (574)
=+-+..+++.
T Consensus 273 ei~k~l~k~D 282 (491)
T KOG2610|consen 273 EIWKRLEKDD 282 (491)
T ss_pred HHHHHhhccc
Confidence 4444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.017 Score=50.98 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=51.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHH
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS---PEHYACMVDLLGRTGHLKSAYELLNSM----PVEPH-ASAWGAL 506 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l 506 (574)
|+.-+. +.+.|++..|.+.|...++ +.+-+ ...+.-|..++...|++++|..+|..+ +..|. +..+..+
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444333 3445566666666666665 33322 233444556666666666666555544 22222 2344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
.......|+.++|...|+++++..|+.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 455555566666666666666666655443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.02 Score=54.64 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP----EHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
...++.+..+|.+.|++++|+..|++.++ +.|+. ..|..+..+|...|+.++|++.++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44777777788888888888888888774 34542 34777788888888888888887776
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.32 Score=46.03 Aligned_cols=165 Identities=11% Similarity=-0.012 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHhhcCCCCcHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEG---LTPDEVAFTIVLTACSH---VGLVEDGWRFFEAMQNVYAIVPSPEHYA 472 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 472 (574)
+.-.++-+|....+++..+++.+.+...- +.-....-....-++.+ .|+.++|++++..+... ...+++++|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 34456667999999999999999998731 11112222234445666 89999999999996654 7778889998
Q ss_pred HHHHHHhh---------cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH----HHHHhh----C
Q 046956 473 CMVDLLGR---------TGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSD-IE---LGELVA----NRLFEL----E 530 (574)
Q Consensus 473 ~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~~~----~ 530 (574)
.+++.|-. ...+++|+..|.+. ..+|+...--++...+...|. .+ +..++. ..+.+. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88877642 23578899988887 666654333233323333332 22 222222 111111 2
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
-.+-+.+..++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3456677889999999999999999999998653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.76 Score=43.69 Aligned_cols=411 Identities=12% Similarity=0.121 Sum_probs=216.0
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHhhccCCCCh---hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHH
Q 046956 66 EQDHSLVAHFISLCHSLATPLSYSTAVFNRIVNPNT---FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLV 142 (574)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 142 (574)
+.|...|-.|+ +.|...+..++-+++++++..|-+ .+|...+++-...+++..+..+|.+...... +...|...
T Consensus 39 PtnI~S~fqLi-q~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLI-QYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHH-HHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 56788999999 999999999999999999987654 4799889888888999999999999887744 45666666
Q ss_pred HHHHhccCCcHH------HHHHHHHHHH-hCCCCCcc-hHHHHHHHH---HcCC------ChHHHHHHHccCCC-C----
Q 046956 143 IKACSHVLSVRE------GTAIHAAVIR-WGVDEDVF-VGTSLIDLY---GKRK------EISCARKVFDEMPE-R---- 200 (574)
Q Consensus 143 l~~~~~~~~~~~------a~~~~~~~~~-~g~~~~~~-~~~~li~~~---~~~g------~~~~A~~~~~~~~~-~---- 200 (574)
+.-..+....-+ ..+.++.... .+++|-.. .|+..+..+ -..| +++.....+.++.. |
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 655444332211 1233333333 35555443 344433322 1223 34555566666653 1
Q ss_pred -----ChhhHHHHHHHHHh-------cCChHHHHHHHhhcCC-------CC---cchHHH-----------HHHHHHccC
Q 046956 201 -----NVVSWTAMIVGYAS-------VGDLVEAKTVFDLMPE-------RS---NVSWNA-----------LIGGLVKIG 247 (574)
Q Consensus 201 -----~~~~~~~li~~~~~-------~g~~~~a~~~~~~~~~-------~~---~~~~~~-----------l~~~~~~~~ 247 (574)
|-..|..=+..... ..-+..|...+++... .| ..+++. .|..-...|
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 11122111111110 1112334444443321 01 111111 111111000
Q ss_pred -----C-hHH-HHHHHhcCC---CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHH
Q 046956 248 -----D-LRS-ARQLFDEMP---ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKI 317 (574)
Q Consensus 248 -----~-~~~-a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 317 (574)
+ ... ..-+++... .-.+..|----..+...++-+.|+...++...-.....--+...|--.++-+.+...
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~ 355 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGC 355 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhh
Confidence 0 000 000000000 011222222233344556666676666655432221111122233333343444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHh---ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC
Q 046956 318 FSDMCSKNVQPDEFILVSLMSACS---QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN 394 (574)
Q Consensus 318 ~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 394 (574)
|+...+. + ..-|. .+.+=+ ..|+++...+++ .+.....+ . ++...++.-.+..-++.|..+|-++.+
T Consensus 356 fdk~~q~-L---~r~ys-~~~s~~~s~~D~N~e~~~Ell---~kr~~k~t-~-v~C~~~N~v~r~~Gl~aaR~~F~k~rk 425 (660)
T COG5107 356 FDKCTQD-L---KRKYS-MGESESASKVDNNFEYSKELL---LKRINKLT-F-VFCVHLNYVLRKRGLEAARKLFIKLRK 425 (660)
T ss_pred HHHHHHH-H---HHHHh-hhhhhhhccccCCccccHHHH---HHHHhhhh-h-HHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 4433221 0 00000 000000 012222111111 11111111 1 566677777788889999999988774
Q ss_pred -----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-
Q 046956 395 -----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAF-TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS- 467 (574)
Q Consensus 395 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 467 (574)
+++..+++++.-++ .|+..-|..+|+--... -||...| ...+.-+...|+-..|..+|+..+. .+..+
T Consensus 426 ~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~--r~~~~q 500 (660)
T COG5107 426 EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE--RLEKTQ 500 (660)
T ss_pred cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH--HHHHhh
Confidence 57788899988776 47788888888865542 4555433 4455667788999999999997766 34444
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 468 -PEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 468 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
...|..++.--..-|++..+..+=+++
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 577888888888888888777665555
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.57 Score=41.77 Aligned_cols=220 Identities=18% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHH
Q 046956 309 GQPDEAVKIFSDMCSKNVQP-DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAE 387 (574)
Q Consensus 309 ~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 387 (574)
+....+...+.......... ....+......+...+....+...+.........+.....+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455555555554432211 23445555555555666665555555554321111111244555555555556666666
Q ss_pred HHhhCCC--CCh-hHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 388 LFETMPN--RDV-VSYCSMIK-GLSIHGHGRQAVSLFDRMLSEGLTP----DEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 388 ~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
.+..... ++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 6655542 111 12222222 45556666666666666544 222 11233333333445556666666666555
Q ss_pred hhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 460 NVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 460 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
. ..+. ....+..+...+...|++++|...+... ...|+ ...+......+...++.+.+...+.+.++..|.
T Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 K--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4 2222 2444555555555555555555555554 22232 223333333333444555565555555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=1.3 Score=45.73 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=37.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
++..+....+.+.+..+.+..+.. ++..|..++..+.+.+..+.-.+...+.++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 455666777788888888777533 677787788888877766655555555444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.042 Score=42.21 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=53.3
Q ss_pred HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 046956 441 ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PVEPH--ASAWGALLGACKLYS 514 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~~ 514 (574)
+....|+.+.|++.|.+... -.+.....||.-..++.-+|+.++|++-+++. +.+.. -..+..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45566777777777777665 44455666777777777777777776666554 11111 112333334566667
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 046956 515 DIELGELVANRLFELEPQ 532 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~ 532 (574)
+.+.|..-|+.+-++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777666666544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.047 Score=48.28 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPD---EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 486 (574)
|++..|...|...++.. +-+ ...+..|..++...|++++|..+|..+.+.+.-.|. ++.+-.|.....+.|+.++
T Consensus 155 gdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 155 GDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred CCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 44555555554444432 111 123344444444445555555555444443222222 2444444444445555555
Q ss_pred HHHHHHhC
Q 046956 487 AYELLNSM 494 (574)
Q Consensus 487 A~~~~~~~ 494 (574)
|...|+++
T Consensus 234 A~atl~qv 241 (262)
T COG1729 234 ACATLQQV 241 (262)
T ss_pred HHHHHHHH
Confidence 54444444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.63 Score=40.86 Aligned_cols=129 Identities=7% Similarity=-0.038 Sum_probs=70.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHH
Q 046956 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--------PVEPHASAWGALL 507 (574)
Q Consensus 436 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~ 507 (574)
+.++..+.-.|.+.-....+.+.++. .-+.++.....|++.-...|+.+.|..+|+.. +.+.+........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34444445555555556666666553 33444555555666666666666666666533 1111122222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
..+.-++++..|.+.+.+.++.+|.++.+.+.-+-++.-.|+..+|.+.++.|++..+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3344555666666666666666666666666666566666666666666666655443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.047 Score=49.27 Aligned_cols=116 Identities=8% Similarity=-0.028 Sum_probs=96.1
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHH---H-HHHHhcCCH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P-VEPHASAWGAL---L-GACKLYSDI 516 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l---~-~~~~~~~~~ 516 (574)
.-.|+..+|...++++.+ ..|.|...+.-.=+++.-.|+.+.-...++++ + -+++.+.+..+ . .++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346788888888999998 77888888887778899999999988888888 3 25665444333 2 456789999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
++|++..+++++++|.|..+...++.++...|+.+++.+.+.+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999987653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.33 Score=42.10 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCchhHH
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSMP-------VEPHA-SAWGALLGACKLYSDIELGELVANRLFEL----EPQNAGSYV 538 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~ 538 (574)
+..+.+.+.+...+++|-..|.+-. .-++. ..+...+-.+....|+..|++.++...+. .|.+.....
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4444555666666666665554431 11221 12333334445556777777777765543 455666666
Q ss_pred HHHHHHHhcCCchHHHHHH
Q 046956 539 LLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~ 557 (574)
.|...| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666653 456666665554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.61 Score=41.95 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=99.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 484 (574)
......|++.+|..+|+...... +-+...-..++.+|...|+.+.|..++..+-.. .-.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34556788888888888887742 233456667788888888888888888876542 1111222223334555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 485 KSAYELLNSMPVEP-HASAWGALLGACKLYSDIELGELVANRLFELE--PQNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 485 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
.+...+-.+.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...--.|..++...|.-+.+...+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555554456 55566667788888899999988888777763 456777888888888888555544333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.13 Score=47.11 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=21.3
Q ss_pred HHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCcchHH
Q 046956 305 YAQNGQPDEAVKIFSDMCSKN--VQPDEFILVSLMSACSQVGNLDLSN 350 (574)
Q Consensus 305 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~ 350 (574)
+....+.++|+..+.+-..+- ...--.++..+..+.+..|..+++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 345566667766666554431 0011123444444455555444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.79 Score=40.82 Aligned_cols=195 Identities=21% Similarity=0.191 Sum_probs=124.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP-----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT-A 441 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~-~ 441 (574)
........+...+++..+...+.... ......+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 56666777777777777777766653 2344456666666677777778888887777643222 122222222 5
Q ss_pred HhccCcHHHHHHHHHHhHhhcCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAI--VPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH--ASAWGALLGACKLYSDI 516 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~~ 516 (574)
+...|+++.+...+.+.... .. ......+......+...++.+++...+.+. ...++ ...+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 77778888888888877431 11 122344444445566777888888877776 33333 45566666777777778
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+.+...+..+....|.....+..++..+...|.++++...+.+.....
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888777766666666666666666777777777665543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.39 Score=44.17 Aligned_cols=23 Identities=13% Similarity=-0.011 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHH
Q 046956 536 SYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
....++.+|...|..++-..-+.
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~ 355 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVV 355 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHH
Confidence 45667777777776665444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.14 Score=49.21 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=24.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLFELEPQ--NAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
..+.+.|+.++|++.++++++..|. +..+...|+.++...+++.++..++.+.
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3344445555555555554444332 2334444444455555555554444443
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.31 Score=48.62 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=101.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCcHHHHHHHHHHhHhhcCCCCcHHHH
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDE-----VAFTIVLTACS----HVGLVEDGWRFFEAMQNVYAIVPSPEHY 471 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 471 (574)
.++....-.||-+.+++.+.+..+.+ +.-.. ..|...+..+. .....+.|.++++.+.+. . |+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y-P~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y-PNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C-CCcHHH
Confidence 34444445567777777666655432 11111 12333333322 245678889999988863 3 454444
Q ss_pred H-HHHHHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-HHHHHHH
Q 046956 472 A-CMVDLLGRTGHLKSAYELLNSMPV------EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGS-YVLLSNI 543 (574)
Q Consensus 472 ~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~ 543 (574)
. .-.+.+...|++++|++.|+++-. +.....+..+...+....++++|...+.++.+.+.-+... ++..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 445677888999999999987521 1233455556677888899999999999999875544444 4456667
Q ss_pred HHhcCCc-------hHHHHHHHHHHh
Q 046956 544 YATADRW-------LDVCLVRSKMKE 562 (574)
Q Consensus 544 ~~~~g~~-------~~a~~~~~~~~~ 562 (574)
+...|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7888888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.21 Score=39.79 Aligned_cols=21 Identities=10% Similarity=-0.069 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhCCCCchh
Q 046956 516 IELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~ 536 (574)
...|...|+++++..|++..+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 568888999999999997654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.15 Score=41.53 Aligned_cols=84 Identities=6% Similarity=-0.076 Sum_probs=41.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|..+... + .-|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34555666666555555432 112233444444455555666666655555432 1 12222333345555556666666
Q ss_pred HHHHHhC
Q 046956 488 YELLNSM 494 (574)
Q Consensus 488 ~~~~~~~ 494 (574)
.+.|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 6555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.021 Score=32.77 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566677777888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.016 Score=33.37 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777888888888888888888888876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.52 Score=40.13 Aligned_cols=161 Identities=16% Similarity=0.056 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
+.+||-+.--+...|+++.|.+.|+...+. .|.- .+...-.-++.-.|++.-|.+-+.+.-+...-.|-...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 457777777778888888888888888873 4432 2332223345556888888777666655312223233333332
Q ss_pred HHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHHHHhc
Q 046956 476 DLLGRTGHLKSAYELL-NSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQN-------AGSYVLLSNIYATA 547 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 547 (574)
...-++.+|..-+ ++.. ..|...|...+-.+. .|++. .+.+++++..-..++ ..+|+-|++.|...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2334566666544 3332 233344443332221 12211 122333333332222 35788889999999
Q ss_pred CCchHHHHHHHHHHhCCC
Q 046956 548 DRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 548 g~~~~a~~~~~~~~~~~~ 565 (574)
|+.++|..+|+-.+..++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999987776543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.11 Score=40.80 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 428 LTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
..|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566667777777777777777777777777776666666666666554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.026 Score=46.95 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=57.0
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcH-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSP-----EHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA-SAWGALLGACK 511 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~ 511 (574)
.+-+...|++++|..-|..++.. +++.. ..|..-..++.+.+.++.|++-..+. .+.|.. ..+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 34466677777777777777762 33321 23444445566666666666655544 444422 22222334566
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+...++.|+.-|+++++.+|....+....+.
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 6666677777777777776665554444433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.085 Score=43.22 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCcHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN----VYAIVPSPEHY 471 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 471 (574)
+...++..+...|++++|..+.+++.... +-+...|..++.++...|+..+|.+.|+.+.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666677788888888888877742 33455788888888888888888887776643 23677776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.7 Score=41.64 Aligned_cols=443 Identities=13% Similarity=0.130 Sum_probs=196.7
Q ss_pred HHHHccCCchHHHHHHHHHHhCCCC----c-hhHHHHHHHHHHhcCCChHHHHHHhhccCC-CChhhHHHHHHHH--HhC
Q 046956 43 LIKKCKLQTHLHQVHSHIIKKGLEQ----D-HSLVAHFISLCHSLATPLSYSTAVFNRIVN-PNTFLWNTLLKGY--SQN 114 (574)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~g~~~----~-~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~--~~~ 114 (574)
+|+..+....+..++..+.+.--.. . ....+.++ ..|. .++++.....+....+ -....|-.+..++ .+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~gril-nAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRIL-NAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHH-HHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 3444555566666666666543211 1 12223344 4443 2344444444433321 1133455554433 567
Q ss_pred CCchHHHHHHHHhHhC--CCCC------------CcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCC----CCcchHHH
Q 046956 115 SRFIEVFTIFVRLIRE--EAVP------------DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVD----EDVFVGTS 176 (574)
Q Consensus 115 g~~~~a~~~~~~m~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ 176 (574)
+++.+|++.+..-... +..| |...=+..+.++...|++.+++.+++++...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7777777666554433 2111 1111123345556777888887777777655333 66777777
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcc-----CChHH
Q 046956 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI-----GDLRS 251 (574)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ 251 (574)
++-++++.=-. ++-+.+...=..-|..+|..|.+.=+.-++.. |++. -|.......++....-. .-+-.
T Consensus 173 ~vlmlsrSYfL----El~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 173 AVLMLSRSYFL----ELKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHhHHHHH----HHHHhcccccChHHHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 66665542111 11111111111223334444433211111100 0000 01111111112111111 11112
Q ss_pred HHHHHhc-CCCCch-hHHHHHHHHHHhcCChHHHHHHHhhCC--------CCCHhHHHHHHHHHHhCCCchHHHHHHHHH
Q 046956 252 ARQLFDE-MPERNV-VSYTTMIDGYAKVGDMTSARSLFEAAP--------DRDVVAWSALISGYAQNGQPDEAVKIFSDM 321 (574)
Q Consensus 252 a~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 321 (574)
+.+.++. -..|+- .+...+..-+.+ +.+++..+.+.+. +.=+.++..++....+.++..+|.+.+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222221 112322 233333333333 3344433333222 123456777777778888888887777666
Q ss_pred HHCCCCCCHHHHHHHH-------HHHh-ccCC---cchHHHHHHHHHHhCCCCChhhHHHHHH---HHhHhcCC-HHHHH
Q 046956 322 CSKNVQPDEFILVSLM-------SACS-QVGN---LDLSNWVDSYLSRSHMDLSRAHVIAALV---DMNAKCGN-MDRAA 386 (574)
Q Consensus 322 ~~~~~~p~~~~~~~ll-------~~~~-~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~ 386 (574)
... .|+...-..++ ...+ .-.+ ...-..+++.+...+++... ....|+ .-+.+.|. -++|.
T Consensus 325 ~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ--Lvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 325 KIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ--LVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred Hhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH--HHHHHHHHHHHHHhcCCccHHHH
Confidence 543 34333221111 1111 1111 11122333333333332222 222222 23444454 67777
Q ss_pred HHHhhCCC---CChhHHHHHH----HHHHH---cCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HhccCcHHH
Q 046956 387 ELFETMPN---RDVVSYCSMI----KGLSI---HGHGRQAVSLFDRMLSEGLTPDEV----AFTIVLTA--CSHVGLVED 450 (574)
Q Consensus 387 ~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~--~~~~g~~~~ 450 (574)
++++.+.+ -|..+-|.+. ..|.+ .....+-+.+-+-..+.|++|-.+ .-+.|.++ +...|++.+
T Consensus 401 nLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 401 NLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 77777663 3443333322 22221 122333444444445567666432 33334333 445677777
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 046956 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWG 504 (574)
Q Consensus 451 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 504 (574)
+.-+-.-+. .+.|++.+|..++-++....++++|..++..++ |+...++
T Consensus 481 c~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 481 CYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 665544443 567788888888877888888888888888875 3444443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.92 E-value=2 Score=42.61 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCS 323 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 323 (574)
...|...|.--...+++.....+|++.++
T Consensus 151 ~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 151 DPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred cHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 34455555555555555555555555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.2 Score=39.26 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=88.1
Q ss_pred HhHhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc---
Q 046956 375 MNAKCGNMDRAAELFETMPNR------DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSH--- 444 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~--- 444 (574)
.-.+.|++++|.+.|+.+... ...+--.++-++-+.++++.|+...++.... +-.||. -|...+.+.+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcc
Confidence 334557777777777776631 1123344555666777777887777777663 222332 23333333221
Q ss_pred ----cCcHH---HHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCC
Q 046956 445 ----VGLVE---DGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAW--GALLGACKLYSD 515 (574)
Q Consensus 445 ----~g~~~---~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~~~ 515 (574)
..+.. .|..-|++++. ..|-+..+ .+|..-+..+. |.... ..+...|.+.|.
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~--ryPnS~Ya--------------~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQ--RYPNSRYA--------------PDAKARIVKLN---DALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHH--HCCCCcch--------------hhHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 12222 33333444443 22211111 11111111110 11111 123366788888
Q ss_pred HHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 516 IELGELVANRLFELEPQNAG---SYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+..|..-++++++..|+... .+..+..+|...|-.++|...-+-+.
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888888888888666544 55666777888888888877765553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.45 Score=46.76 Aligned_cols=130 Identities=13% Similarity=0.118 Sum_probs=57.9
Q ss_pred HHHcCCChHHHHHHHc--cCC-CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHH
Q 046956 180 LYGKRKEISCARKVFD--EMP-ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF 256 (574)
Q Consensus 180 ~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (574)
...-.|+++++.++.. ++. .-...-.+.++.-+-+.|..+.|+.+.+. + ..-.....+.|+++.|.++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHH
Confidence 3344566666433332 111 01123355566666666666666665332 1 12233344555666665555
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 046956 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSK 324 (574)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 324 (574)
..+ .+...|..|.+...+.|+++-|++.|.+..+ +..|+-.|.-.|+.++-.++.+.....
T Consensus 342 ~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 342 KEL--DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp CCC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred Hhc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 554 2444555555555555555555555555442 333444444455554444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.64 E-value=3 Score=42.56 Aligned_cols=78 Identities=9% Similarity=0.098 Sum_probs=36.1
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIEL 518 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 518 (574)
+.-+...|+..+|.++-.+.+ -||...|-.-+.++...+++++-+++-++.+. +.-|.-...+|.+.|+.++
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHhcccHHH
Confidence 333444455555554443332 24444444445555555555555555444421 2223334445555555555
Q ss_pred HHHHHH
Q 046956 519 GELVAN 524 (574)
Q Consensus 519 a~~~~~ 524 (574)
|.++.-
T Consensus 763 A~KYip 768 (829)
T KOG2280|consen 763 AKKYIP 768 (829)
T ss_pred Hhhhhh
Confidence 554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.15 Score=39.26 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=59.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH---HHHHHHHHHHhhc
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP---EHYACMVDLLGRT 481 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~ 481 (574)
-+....|+.+.|++.|.+.+.. .+-....|+.-..++.-.|+.++|+.-+++..+.-|-. .. ..|-.-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 3566778888888888887773 23345678888888888888888888888877753333 22 2233333456677
Q ss_pred CCHHHHHHHHHhC
Q 046956 482 GHLKSAYELLNSM 494 (574)
Q Consensus 482 g~~~~A~~~~~~~ 494 (574)
|+.+.|..-|+..
T Consensus 129 g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 129 GNDDAARADFEAA 141 (175)
T ss_pred CchHHHHHhHHHH
Confidence 7888877777664
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.25 Score=49.34 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=103.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-----HHHHHHHHHHh----hcCCHHH
Q 046956 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-----EHYACMVDLLG----RTGHLKS 486 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~----~~g~~~~ 486 (574)
...+|.-++.. ++| .+..++....-.|+-+.+++.+.+..+..++.-.. -.|..++..+. .....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555553 344 34566777788899999999999887753343222 22333333333 2557889
Q ss_pred HHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 487 AYELLNSM-PVEPHASAWGALL-GACKLYSDIELGELVANRLFELE----PQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 487 A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
|.++++.+ ..-|+...|...- +.+...|+.++|++.+++++... .-..-.+..+++.+...++|++|.+.+.++
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 99999998 4568877776554 77889999999999999887532 223456788999999999999999999999
Q ss_pred HhCC
Q 046956 561 KERG 564 (574)
Q Consensus 561 ~~~~ 564 (574)
.+.+
T Consensus 332 ~~~s 335 (468)
T PF10300_consen 332 LKES 335 (468)
T ss_pred Hhcc
Confidence 8643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.1 Score=41.61 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhCCCCch
Q 046956 518 LGELVANRLFELEPQNAG 535 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~ 535 (574)
.|.+...++.+.+|.-|.
T Consensus 364 ~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHHhCCCCch
Confidence 356777888888776543
|
The molecular function of this protein is uncertain. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=4.2 Score=42.42 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=65.2
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 046956 410 HGHGRQAVSLFDRMLSE-GLTPDEV--AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~-g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
..+.+.|..++.+.... ++.+... ....+.......+..+++...+...... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 35567888888876443 2333332 3334433333332255666666654432 1233444444555568888888
Q ss_pred HHHHHHhCCCC-CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 046956 487 AYELLNSMPVE-PHASAWGALL-GACKLYSDIELGELVANRLF 527 (574)
Q Consensus 487 A~~~~~~~~~~-p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~ 527 (574)
+...+..|+.. .+...|.... .++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888321 1222333333 56566788888888888864
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.36 E-value=5.1 Score=43.37 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=35.7
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHH
Q 046956 476 DLLGRTGHLKSAYELLNSMPVEPHASA--WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (574)
.+|..+|+|.+|+.+..++....+... -..|..-+...++.-+|-+++.+.... | ..-...|++...|++|
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~------~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P------EEAVALLCKAKEWEEA 1045 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H------HHHHHHHhhHhHHHHH
Confidence 344445555555555444422222211 133445555555555555544443221 1 1223345666677777
Q ss_pred HHHHHHH
Q 046956 554 CLVRSKM 560 (574)
Q Consensus 554 ~~~~~~~ 560 (574)
.++....
T Consensus 1046 lrva~~~ 1052 (1265)
T KOG1920|consen 1046 LRVASKA 1052 (1265)
T ss_pred HHHHHhc
Confidence 7665443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.23 Score=43.88 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=80.6
Q ss_pred HHHHHHHhhCC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------
Q 046956 383 DRAAELFETMP--NRDVVSYCSMIKGLSIH-----GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG--------- 446 (574)
Q Consensus 383 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--------- 446 (574)
-..+..|..+. +.|-.+|-.++..+..+ +..+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 33455666666 57778888888877654 567777788899999999999999999999876543
Q ss_pred -------cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH
Q 046956 447 -------LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL 484 (574)
Q Consensus 447 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 484 (574)
+-.-++.++++|..- |+.||.++-..+++++++.|..
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 234588999999884 9999999999999999998864
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.14 Score=45.25 Aligned_cols=111 Identities=9% Similarity=0.085 Sum_probs=78.1
Q ss_pred HHHHHhhccC--CCChhhHHHHHHHHHhC-----CCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccC----------
Q 046956 88 YSTAVFNRIV--NPNTFLWNTLLKGYSQN-----SRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVL---------- 150 (574)
Q Consensus 88 ~A~~~~~~~~--~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---------- 150 (574)
..+..|.... ..|-.+|-..+..|... +..+=-...++.|.+-|+.-|..+|+.||+.+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445555554 56667777777766543 344445556788888898889999999888654322
Q ss_pred ------CcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCh-HHHHHHHccCC
Q 046956 151 ------SVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEI-SCARKVFDEMP 198 (574)
Q Consensus 151 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 198 (574)
.-+-+..++++|..+|+.||..+-..|++++++.|-. .+..++.-.|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345789999999999999999999999999988753 34444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.5 Score=35.49 Aligned_cols=126 Identities=6% Similarity=-0.004 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 479 (574)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. . .+.......++.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 3445566666667777777777777665 345556777777776543 2333344332 1 12222334566667
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLY-SDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
+.|.++++..++.+++. +...+..+... ++.+.|++++++ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777777777777642 22222223333 677777776664 345556666665443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.57 Score=36.87 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH--------------hhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQ--------------NVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---- 494 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 494 (574)
.++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344445555555555555544443321 11134456666666666666666666666666554
Q ss_pred CCCCCHHHHHHHH
Q 046956 495 PVEPHASAWGALL 507 (574)
Q Consensus 495 ~~~p~~~~~~~l~ 507 (574)
+++-+...|..++
T Consensus 83 ~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 83 PIPIPKEFWRRLL 95 (126)
T ss_pred CCCCCHHHHHHHH
Confidence 3344455666666
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.4 Score=37.06 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=81.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE---GLT--PDEVAFTIVLTAC 442 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~--p~~~~~~~l~~~~ 442 (574)
.++.-..+|..+|..+.|-..+++.-+ .....++++|+++|++.... +-+ .-...+......+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 566666777777777766655554321 22345677777777765431 100 0112345555566
Q ss_pred hccCcHHHHHHHHHHhHhh---cCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHh
Q 046956 443 SHVGLVEDGWRFFEAMQNV---YAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSM---PV--E-PHASAWGALLGACKL 512 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~---~~--~-p~~~~~~~l~~~~~~ 512 (574)
.+...+++|-..+.+-... +.--++. ..|-..|-.+.-..++..|.+.++.- +. . -+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 7777777766555433211 0111222 33445555666778899999998874 21 1 2456777777776 4
Q ss_pred cCCHHHHHHHHH
Q 046956 513 YSDIELGELVAN 524 (574)
Q Consensus 513 ~~~~~~a~~~~~ 524 (574)
.||.+++..++.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 677777766553
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=3.1 Score=38.33 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=38.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCc----hHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQP----DEAVKIFSDMCSKNVQPDEFILVSL 336 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~~~~p~~~~~~~l 336 (574)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+... .++..+-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 455555555555555555433333333333344555555556666666653 3455555555332 3444444444
Q ss_pred HHHHhc
Q 046956 337 MSACSQ 342 (574)
Q Consensus 337 l~~~~~ 342 (574)
+.++..
T Consensus 112 ~~aLG~ 117 (280)
T PRK09687 112 INATGH 117 (280)
T ss_pred HHHHhc
Confidence 444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.97 Score=44.52 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC
Q 046956 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHG 411 (574)
Q Consensus 332 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 411 (574)
....++.-+.+.|-.+.|.++-..- ..-.+...++|+++.|.++.++.. +...|..|......+|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~-------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP-------------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H-------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh-------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcC
Confidence 3455555555566555555542211 123344566778887777776655 4557888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 046956 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 412 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (574)
+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.+... | -++....++.-.|+.++..+++
T Consensus 362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHH
Confidence 88888877776433 445555566667776666666655543 1 1344444555667777777777
Q ss_pred HhCC
Q 046956 492 NSMP 495 (574)
Q Consensus 492 ~~~~ 495 (574)
.+.+
T Consensus 426 ~~~~ 429 (443)
T PF04053_consen 426 IETG 429 (443)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.55 E-value=4.7 Score=38.79 Aligned_cols=150 Identities=12% Similarity=-0.004 Sum_probs=82.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc--HH
Q 046956 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP---DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS--PE 469 (574)
Q Consensus 395 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 469 (574)
....+|..++..+.+.|+++.|...+.++...+... .+.....-+......|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344577788888888888888888888877643111 2233444455566778888888888877762 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 470 HYACMVDLLGRTGHLKSAYEL-LNSMPVEPHASAWGALLGACKLY------SDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
....+...+.. ..+..... ........-...+..+...+... ++.+++...|+++.+..|.....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000112222333333333 78889999999999999998888888887
Q ss_pred HHHhc
Q 046956 543 IYATA 547 (574)
Q Consensus 543 ~~~~~ 547 (574)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.098 Score=29.90 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555556677777777777777777777664
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=4.2 Score=37.45 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSAC 340 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 340 (574)
++|..+-...+.+.++.|+..-.-.+.+.+..++ .....+.++...|.. +|+..+..+.+. .||..+-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4455555555555655555332222333333333 223445555555553 466666665543 23444444444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.088 Score=32.43 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|.++..++..|.+.|++++|.++++++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999998765
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.09 Score=30.65 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 536 SYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
++..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888743
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.46 Score=38.64 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=57.7
Q ss_pred HHHHHHHHH---HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 469 EHYACMVDL---LGRTGHLKSAYELLNSM-PVEPHASAWGALL-GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 469 ~~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
.+.+.|+.. -.+.++.+++..++..+ ...|.......+- ..+...|++.+|+++++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344444443 35677888888888877 4566655554443 556788888888888888888888888777788877
Q ss_pred HHhcCCc
Q 046956 544 YATADRW 550 (574)
Q Consensus 544 ~~~~g~~ 550 (574)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 7777763
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.39 Score=38.28 Aligned_cols=70 Identities=10% Similarity=0.066 Sum_probs=36.5
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 480 RTGHLKSAYELLNSM-PVEPHASAWGALL-GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
..++.+++..+++.+ ...|+......+- ..+...|++++|.++++...+..+..+..-..++.++...||
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 355666666666555 2334333222222 334555666666666666655555555555555555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.6 Score=34.08 Aligned_cols=86 Identities=7% Similarity=0.043 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046956 104 WNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183 (574)
Q Consensus 104 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 183 (574)
-..++..+...+.+......++.+...+. .+...++.++..+++.+. ......+.. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 44556666666666667777666666553 455566666666654422 222222221 1223333345555555
Q ss_pred CCChHHHHHHHccC
Q 046956 184 RKEISCARKVFDEM 197 (574)
Q Consensus 184 ~g~~~~A~~~~~~~ 197 (574)
.+-++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.00 E-value=8.6 Score=39.72 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=51.2
Q ss_pred hccCCcHHHHHHHHHHHHhCCCC---CcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHH
Q 046956 147 SHVLSVREGTAIHAAVIRWGVDE---DVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKT 223 (574)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 223 (574)
.+.+.+++|..+-+... |..| -..+...+|..+.-.|++++|-...-.|...+..-|..-+..+...++......
T Consensus 367 l~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 34445555554443322 2222 223455666666677777777777777766666666666666666666554333
Q ss_pred HHhhcCC-CCcchHHHHHHHHHc
Q 046956 224 VFDLMPE-RSNVSWNALIGGLVK 245 (574)
Q Consensus 224 ~~~~~~~-~~~~~~~~l~~~~~~ 245 (574)
++-.-.. -++..|..++..+..
T Consensus 445 ~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 445 YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cCCCCCcccCchHHHHHHHHHHH
Confidence 3221111 134455555555554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.13 Score=29.91 Aligned_cols=28 Identities=18% Similarity=0.042 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+|..+...|.+.|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667788889999999999999986654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.18 Score=45.85 Aligned_cols=101 Identities=12% Similarity=0.005 Sum_probs=74.8
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP-V-EPHASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~ 515 (574)
-.+-|.+.|.+++|+.+|..... ..+-|+..+..-..+|.+...+..|..-...+- . +.-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999998874 333388888888899999999988877665541 1 1123355555566667889
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 516 IELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
..+|.+-++.++++.|++...--.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHH
Confidence 9999999999999999965544333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.9 Score=34.61 Aligned_cols=117 Identities=10% Similarity=0.060 Sum_probs=55.2
Q ss_pred HHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC--ChHHHHHHHccCCC
Q 046956 122 TIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRK--EISCARKVFDEMPE 199 (574)
Q Consensus 122 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 199 (574)
+..+.+.+.++.|+...+..++..+.+.|.+..- ..++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 3444445556666666666666666666654433 33333444444433332221111110 1223333333332
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcc
Q 046956 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246 (574)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (574)
..+..++..+...|++-+|+++.+.....+......++.+..+.
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~ 133 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANS 133 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHc
Confidence 23445556666677777777766665443333334444444433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.51 E-value=11 Score=39.85 Aligned_cols=256 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
|.-....|+++.|-.++++.... +...+++.......+.+-..-....+. ..-.-+-......+
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~---------------L~~~~~lsll~~~~~~lP~~~l~~~P~-Lvll~aW~~~s~~r 430 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQ---------------LFNGSELSLLLAWLKALPAELLASTPR-LVLLQAWLLASQHR 430 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhh---------------hhcccchHHHHHHHHhCCHHHHhhCch-HHHHHHHHHHHccC
Q ss_pred HHHHHHHHhhCCCCChh-----------HHHHHHHHHH-HcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhcc
Q 046956 382 MDRAAELFETMPNRDVV-----------SYCSMIKGLS-IHGHGRQAVSLFDRMLSE----GLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 382 ~~~A~~~~~~~~~~~~~-----------~~~~li~~~~-~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~ 445 (574)
+++|..++.+....=.. .|+.+-.... ..|++++|.++.+..... -..+....+..+..+..-.
T Consensus 431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~ 510 (894)
T COG2909 431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIR 510 (894)
T ss_pred hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHh
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH-----HhhcC--CHHHHHHHHHhC------CCCCCHHHHHHHHHHHHh
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL-----LGRTG--HLKSAYELLNSM------PVEPHASAWGALLGACKL 512 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g--~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~ 512 (574)
|++++|..+..+..+. .-.-+...+..++.. +...| .+++....|... ...-...........+..
T Consensus 511 G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~ 589 (894)
T COG2909 511 GELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRA 589 (894)
T ss_pred chHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHhh------CCCCchhHH-HHHHHHHhcCCchHHHHHHHHHHhCCCccCCCcccC
Q 046956 513 YSDIELGELVANRLFEL------EPQNAGSYV-LLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~------~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 574 (574)
.-+++.+..-....++. .|.+..... .|+.++...|+.++|...++++..-.....+..-|+
T Consensus 590 ~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 590 WLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.50 E-value=11 Score=39.33 Aligned_cols=170 Identities=12% Similarity=0.043 Sum_probs=102.1
Q ss_pred HHHhcCCChHHHHHHhhccCCCChh---hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHH
Q 046956 78 LCHSLATPLSYSTAVFNRIVNPNTF---LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVRE 154 (574)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 154 (574)
.+..+..-++.|..+-+.-..+... ..-....-+.+.|++++|...|-+-+.. +.| ..++.-+....+..+
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHH
Confidence 4445555667777766554322211 2333445567899999999988776543 222 235555666667777
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChh--hHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 046956 155 GTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV--SWTAMIVGYASVGDLVEAKTVFDLMPERS 232 (574)
Q Consensus 155 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 232 (574)
-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...+ ... -....+..+.+.+-.++|.-+-.+... .
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-h 492 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKFKK-H 492 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-C
Confidence 77888888888864 555667889999999999888888877662 111 133445555555555555555444333 2
Q ss_pred cchHHHHHHHHHccCChHHHHHHHhcC
Q 046956 233 NVSWNALIGGLVKIGDLRSARQLFDEM 259 (574)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (574)
......+ +-..+++++|.+.+..+
T Consensus 493 e~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 493 EWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 2222222 23455666666666655
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.14 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 534 AGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+.++..++.+|...|++++|.+.+++..+..
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999988654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.029 Score=45.78 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=55.2
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHH
Q 046956 142 VIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEA 221 (574)
Q Consensus 142 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 221 (574)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566666777777777788777766566677778888888888777777777774332 2234455566666666666
Q ss_pred HHHHhhcC
Q 046956 222 KTVFDLMP 229 (574)
Q Consensus 222 ~~~~~~~~ 229 (574)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.31 Score=44.38 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=67.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
-..-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-...++.. ...-...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999887 567 8889988889999999998888777766642 111123344444444455
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHH
Q 046956 482 GHLKSAYELLNSM-PVEPHASAW 503 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~~p~~~~~ 503 (574)
|+..+|.+-++.. ..+|+...+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHH
Confidence 6666776666655 566764433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.24 E-value=4.5 Score=34.13 Aligned_cols=129 Identities=8% Similarity=0.011 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHhHhhcCCCCcH----HHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTI--VLTACSHVGLVEDGWRFFEAMQNVYAIVPSP----EHYA 472 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~ 472 (574)
.|..++.... .+.. +.....+++....-.....++.. +...+...|++++|...++..... +.|. ..-.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444444433 2333 55556666665421212223333 345678889999999999887742 2221 2223
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 473 CMVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
.|.+.....|.+++|++.++....+. .......-...+...|+-++|+..|+++++..++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 46677888999999999998874221 1222333347889999999999999999998744
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.1 Score=36.55 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=71.4
Q ss_pred HHHHHHHH---HHhccCcHHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 046956 433 VAFTIVLT---ACSHVGLVEDGWRFFEAMQNVYAIVPSPE-HYACMVDLLGRTGHLKSAYELLNSMP-VEPHASAWGALL 507 (574)
Q Consensus 433 ~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 507 (574)
.+.+.|+. .-.+.++.+++..++..+. .+.|... .-..-...+...|++.+|+.+|+++. ..|.......++
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 34455554 3457789999999999987 4566543 33334566889999999999999993 345555556666
Q ss_pred HHHHh-cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 508 GACKL-YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 508 ~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
..|.. .||.+ =....+++++..++ +.....+. .+....+...|..
T Consensus 85 A~CL~~~~D~~-Wr~~A~evle~~~d-~~a~~Lv~-~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 85 ALCLYALGDPS-WRRYADEVLESGAD-PDARALVR-ALLARADLEPAHE 130 (160)
T ss_pred HHHHHHcCChH-HHHHHHHHHhcCCC-hHHHHHHH-HHHHhccccchhh
Confidence 55544 44433 33445556665553 44444333 3444444444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.5 Score=37.17 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHH--HH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV--AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA--CM 474 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l 474 (574)
.+..+...|.+.|+.++|.+.|.++.+....+... .+..++......|++..+...+.++........+....+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556666667777777777777766654444432 455666666667777777776666654311111121111 11
Q ss_pred H--HHHhhcCCHHHHHHHHHhC
Q 046956 475 V--DLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 475 ~--~~~~~~g~~~~A~~~~~~~ 494 (574)
. -.+...|++.+|.+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1234567777777777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.20 E-value=5.8 Score=35.22 Aligned_cols=240 Identities=17% Similarity=0.183 Sum_probs=136.0
Q ss_pred cCChHHHHHHHhhCCC----C---CHhHHHHHHHHHHhCCCchHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccC
Q 046956 277 VGDMTSARSLFEAAPD----R---DVVAWSALISGYAQNGQPDEAVKIFSDMCSK---NV--QPDEFILVSLMSACSQVG 344 (574)
Q Consensus 277 ~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~ 344 (574)
..+.++|+.-|.++.+ + .-.+...+|..+.+.|++++.+..|.++..- .+ .-+....+.++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777766543 1 1234556778888888888888888777531 11 124456667776666666
Q ss_pred CcchHHHHHHHHHHh-----CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--------CC-------hhHHHHHH
Q 046956 345 NLDLSNWVDSYLSRS-----HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--------RD-------VVSYCSMI 404 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li 404 (574)
+.+....+++.-.+. +...--. +-..|...|...|.+.+..++++.+.+ .| ...|..-|
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFK-TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFK-TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeee-ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666555555433321 1000000 234577888888888888888877652 11 24677778
Q ss_pred HHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----hccCcHHHHHHHHHHhHhhcCCC--CcH---HHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTAC-----SHVGLVEDGWRFFEAMQNVYAIV--PSP---EHYAC 473 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~--p~~---~~~~~ 473 (574)
..|..+++-.+...+|++.+.. ..-|.+... .+++-| .+.|.+++|..-|-++-+.+.-. |.. --|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 8888888888888888876642 234444433 334433 46788888876555554433222 222 22455
Q ss_pred HHHHHhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046956 474 MVDLLGRTGH----LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 474 l~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
|+..+.+.|- .++|.- .+..|.......++.+|.. +++.+-++++
T Consensus 278 LANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 6666666651 111110 0223445556667777754 4554444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.06 E-value=7.3 Score=35.98 Aligned_cols=20 Identities=0% Similarity=-0.296 Sum_probs=14.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLF 527 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~ 527 (574)
..+.+.++++.|...|+-++
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34567788888888887654
|
It is also involved in sporulation []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.1 Score=37.28 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+++|...|+++...+|++......|-.. ++|-++..++.+++.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHh
Confidence 5677788888888899877665555432 457777777766654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.18 Score=28.73 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.+|..++.+|...|++++|...+++.++-+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.27 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=13.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
..++.+.|++++|.+.++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444555555555555555555554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.70 E-value=4.8 Score=33.97 Aligned_cols=90 Identities=12% Similarity=-0.035 Sum_probs=65.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALL-----GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
+...+..+|++++|...++..-..|....+..++ ......|.+++|+..++...+-.- .+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 4567889999999999998764344444444433 556788888988887765332211 1233556799999999
Q ss_pred CchHHHHHHHHHHhCC
Q 046956 549 RWLDVCLVRSKMKERG 564 (574)
Q Consensus 549 ~~~~a~~~~~~~~~~~ 564 (574)
+-++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999998876
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.8 Score=36.44 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=44.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPDE-----VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLL 478 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 478 (574)
.-+...|++++|..-|...++. +++.. ..|..-..++.+.+.++.|+.-..+.++. .|+ ......-+.+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 3455666666666666666663 22221 12333334555666666666655555532 222 22222334456
Q ss_pred hhcCCHHHHHHHHHhC
Q 046956 479 GRTGHLKSAYELLNSM 494 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~ 494 (574)
.+...+++|++-++++
T Consensus 179 ek~ek~eealeDyKki 194 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKI 194 (271)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 6666666666666655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.81 Score=41.40 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
.++..++..+...|+++.+.+.++++ ...| +...|..++.+|...|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35555666666666666666666555 3333 455566666666666666666666666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.46 E-value=8.3 Score=37.06 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 498 PHASAWGALLGACKLYSDIELGELVANRLFELEP----QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 498 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
....+|..+...+.+.|.++.|...+.++...++ ..+.+...-++.+...|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3456788888999999999999999999988642 2567778889999999999999999998887433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.3 Score=42.50 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=88.0
Q ss_pred HHHHHHcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC
Q 046956 404 IKGLSIHGHGRQAVSLFDR-MLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 482 (574)
|.--...|+.-.|.+-+.. +....-.|+....... .+...|+++.+.+.+..... -+.....+..++++...+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 3334456787776654444 4443334555444333 36778999999999888775 44556677888899999999
Q ss_pred CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 483 HLKSAYELLNSM-PVE-PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 483 ~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
++++|...-+.| +.+ .++.............|-++++.-.+++.+.++|....-+
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 999999988887 322 2334444344455667888999999999999986544433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.5 Score=34.91 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=70.7
Q ss_pred CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCC
Q 046956 360 HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNR------DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE---GLTP 430 (574)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p 430 (574)
..+.+....+..++..|.+.|+.+.|.+.|.++.+. -+..+-.+|+.....+++..+...+.+.... |-.+
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 334444447888999999999999999999998753 2346777888888999999999888876643 2222
Q ss_pred CHHHHHHHHH--HHhccCcHHHHHHHHHHhHhh
Q 046956 431 DEVAFTIVLT--ACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 431 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~ 461 (574)
+...-..... .+...+++..|-+.|-.....
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2222112222 245578999999888777653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.2 Score=40.46 Aligned_cols=63 Identities=19% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 503 WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.+.+-.+|.+.++++.|+++.+.++.+.|+++.-+..-+-+|.+.|.+..|..-++...+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 344446778888888888888888888888888888888888888888888888887776654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.68 E-value=11 Score=34.95 Aligned_cols=135 Identities=9% Similarity=0.188 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCC----cchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHH
Q 046956 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ--VGN----LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384 (574)
Q Consensus 311 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 384 (574)
+++.+.+++.|.+.|+.-+..+|......... ..+ ...+..+++.|.+..+-.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~------------------ 139 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP------------------ 139 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc------------------
Confidence 45567788889999888888777664443333 111 235556666666655433322
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHH
Q 046956 385 AAELFETMPNRDVVSYCSMIKGLSIHGH----GRQAVSLFDRMLSEGLTPDEV--AFTIVLTACSHVGL--VEDGWRFFE 456 (574)
Q Consensus 385 A~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~ 456 (574)
+-..+..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+..... ...+.++++
T Consensus 140 -----------~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 140 -----------EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred -----------cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 22223333222 1122 355677788888877766543 33333332222211 446777888
Q ss_pred HhHhhcCCCCcHHHHHHHHHH
Q 046956 457 AMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~ 477 (574)
.+.+. ++++....|..++-.
T Consensus 207 ~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 207 ALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHc-CCccccccccHHHHH
Confidence 88876 888877777655443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.2 Score=28.19 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 536 SYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
++..++.++.+.|++++|.+.|++++++-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 567899999999999999999999987543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.60 E-value=6.9 Score=32.34 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHhccCcHHHHHHHHHHhHh
Q 046956 441 ACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 441 ~~~~~g~~~~a~~~~~~~~~ 460 (574)
+-.+.|++..|.+.|..+..
T Consensus 176 Aa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccchHHHHHHHHHHHc
Confidence 33444444444444444443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.72 Score=38.23 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
.+++|+.-|++++.++|+...++..++.+|...+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 36778888999999999999999999999987663
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.47 E-value=9 Score=33.43 Aligned_cols=53 Identities=6% Similarity=-0.097 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchh-------HHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 510 CKLYSDIELGELVANRLFELEPQNAGS-------YVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
-...+++.+|+.+|++.....-+++.. +..-+.++.-.++.-.+...+++..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 355677777777777776654333321 12222233333555555555554443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.19 E-value=6.1 Score=30.97 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=71.9
Q ss_pred HhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 377 AKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
.-.|..++..+++.+..+ .+..-+|=+|.-....-+-+-..+.++..-+ --|. ...|+.......+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHHHH
Confidence 345777777888777653 3444444444444433344444444443322 1121 1223333333333
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
-.+- .+.+....-++.+...|+-+.-.+++..+ ..++++..+..+..+|.+.|+..++.+++.++-+..
T Consensus 80 ~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 80 AKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2221 12333444556677888888888888776 346778888888899999999999999998887653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.31 Score=25.82 Aligned_cols=24 Identities=4% Similarity=-0.129 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHH
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.10 E-value=11 Score=33.98 Aligned_cols=59 Identities=15% Similarity=0.047 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+.....|...|.+.+|.++.++++.++|-+...+..|...+...||--+|.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33447889999999999999999999999999999999999999998888888887753
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.08 E-value=3 Score=37.90 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCcHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN----VYAIVPSPEHYACM 474 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 474 (574)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555666666666666666666666642 33445666666666666666666666665544 12556665555444
Q ss_pred HHH
Q 046956 475 VDL 477 (574)
Q Consensus 475 ~~~ 477 (574)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.94 Score=33.16 Aligned_cols=49 Identities=18% Similarity=0.032 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCC
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQ--NAGSYVLLSNIYATADR 549 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 549 (574)
.....+...+...|++++|++.+-.+++.+|+ +..+-..|..++...|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34444445555555555555555555555433 24444555555555554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.97 Score=38.60 Aligned_cols=62 Identities=21% Similarity=0.144 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 472 ACMVDLLGRTGHLKSAYELLNS-MPVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
+..+..+.+.+.+.+|+...+. .+.+|. ...-..++..++-.|++++|..-++-+-++.|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3345566667777777766543 344553 3344555577777777777777777776666664
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.1 Score=38.76 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
.+.+..+++.+..--.+++++.|+.....+.|+........+++|...+++.
T Consensus 53 chlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 53 CHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555544444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.4 Score=28.36 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
.+..++.+.|+++.|.+..+.+++..|+|..+....
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455678899999999999999999999988765544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.57 Score=26.60 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
.+|..++.+|...|++++|...|++..+-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988764
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.32 Score=27.84 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHhhcCCHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~ 488 (574)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3455555555555555555553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.44 E-value=12 Score=33.23 Aligned_cols=74 Identities=22% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHh
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNV--QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (574)
+..-.+.|++++|.+.|+.+..... +-...+...++.++.+.++.+.|....++..+..+..+.. -|..-+.++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgL 116 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGL 116 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHH
Confidence 3444566777777777777665421 1123444555555666666666666666655554444333 343333333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.28 E-value=4.7 Score=40.19 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=86.8
Q ss_pred HHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 046956 212 YASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAP 291 (574)
Q Consensus 212 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 291 (574)
....|+++.|..++..+.++ .-+.++.-+.+.|..++|+++--. ||. -.....+.|+++.|.++..+..
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~~ 664 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEAN 664 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhhc
Confidence 34456777776666555532 234455556666777777665431 111 1234456778888877655443
Q ss_pred CCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHH
Q 046956 292 DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371 (574)
Q Consensus 292 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 371 (574)
+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.
T Consensus 665 --s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-------N~ 726 (794)
T KOG0276|consen 665 --SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-------NL 726 (794)
T ss_pred --chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-------ch
Confidence 566788888888888888888888876643 344555666666655544444444444421 22
Q ss_pred HHHHhHhcCCHHHHHHHHhh
Q 046956 372 LVDMNAKCGNMDRAAELFET 391 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~ 391 (574)
-..+|...|+++++.+++.+
T Consensus 727 AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 22334445555555555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.79 Score=27.46 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
+++.+...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.19 E-value=27 Score=36.68 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHhhC---CCCch-hH-----HHHHHHHHhcCCchHHHHHHHHHH
Q 046956 513 YSDIELGELVANRLFELE---PQNAG-SY-----VLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
.|+.++.......+.... |+... .| ..+.+.|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777766666666542 22222 22 245666888999999988887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.18 E-value=20 Score=35.28 Aligned_cols=170 Identities=9% Similarity=0.068 Sum_probs=87.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
...+++..+....++.-.+.+..++. ..+-..|..++.+|... ..++-..+|+++.+. .-|...+..-+..+...
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHH
Confidence 44455555555555555555555554 24445566666666666 446666667766663 23333333333333333
Q ss_pred CcHHHHHHHHHHhHhhcCCCCc------HHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPS------PEHYACMVDLLGRTGHLKSAYELLNSM----PVEPHASAWGALLGACKLYSD 515 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~ 515 (574)
++.+.+..+|.++... +-|. .+.|..+.... ..+.+.-..+..++ +..--...+..+..-|....+
T Consensus 145 ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 6666666666666652 2221 13344333221 12333344443333 222223334444455666677
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
+.+|++++...++.+..|..+...++.-+
T Consensus 221 ~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 221 WTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 77777777777777666666655555443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.12 E-value=3.4 Score=30.58 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+.+. ....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 55666677777778999999999999999999999999999999875443 3336776653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.88 E-value=16 Score=33.71 Aligned_cols=158 Identities=11% Similarity=-0.028 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGR---QAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 474 (574)
+...++.+|...+..+ +|..+++.+... -|+ +..+..-+..+.+.++.+.+.+.+.+|+.. +.-....+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHH
Confidence 5566677777666544 455566666443 233 345555666666688888888888888874 33122233333
Q ss_pred HHHH---hhcCCHHHHHHHHHhC---CCCCCHH-HHHH-HH-HH--HHhcCC------HHHHHHHHHHHHhh--CCCCch
Q 046956 475 VDLL---GRTGHLKSAYELLNSM---PVEPHAS-AWGA-LL-GA--CKLYSD------IELGELVANRLFEL--EPQNAG 535 (574)
Q Consensus 475 ~~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~-l~-~~--~~~~~~------~~~a~~~~~~~~~~--~p~~~~ 535 (574)
+..+ ..... ..|...+..+ ...|... .... ++ .. ....++ .+....+++...+. .|-++.
T Consensus 162 l~~i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhhCc-HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3333 33332 3444444333 2233222 1111 11 11 122222 33333444433322 344443
Q ss_pred hHH-------HHHHHHHhcCCchHHHHHHHHHH
Q 046956 536 SYV-------LLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 536 ~~~-------~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+.. .-+...++.++|++|.+.++-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 322 23555788999999999998544
|
It is also involved in sporulation []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.87 E-value=12 Score=32.26 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 046956 102 FLWNTLLKGYSQNSRFIEVFTIFVRLIRE 130 (574)
Q Consensus 102 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 130 (574)
..||.+.--+...|+++.|.+.|+...+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 34555555555555555555555555444
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=89.84 E-value=2.3 Score=37.26 Aligned_cols=63 Identities=14% Similarity=0.007 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHH-------HHHHHHHHHHhhC--CC----CchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 503 WGALLGACKLYSDIE-------LGELVANRLFELE--PQ----NAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+..+.+.|...|+.+ .|...|+++.+.. |. ...+.+.+|.+..+.|++++|.+.|.++...+-
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 334445666666644 4445555555442 22 246788899999999999999999999886553
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.76 E-value=11 Score=31.42 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChh
Q 046956 157 AIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVV 203 (574)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 203 (574)
++.+.+.+.|++|+...+..+++.+.+.|++.....++.--.-+|..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk 61 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSK 61 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcH
Confidence 45556667789999999999999999999988888777654444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.73 E-value=2.9 Score=33.57 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=51.9
Q ss_pred HHHHHHHHH---HhccCcHHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHH
Q 046956 433 VAFTIVLTA---CSHVGLVEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALL 507 (574)
Q Consensus 433 ~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~ 507 (574)
...+.|+.. -...++.+++..+++.+. .+.|+. ..-..-...+...|++.+|..+|++....+ ....-..++
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344445443 345789999999999987 445553 222333556789999999999999995443 434344444
Q ss_pred HHH-HhcCCHH
Q 046956 508 GAC-KLYSDIE 517 (574)
Q Consensus 508 ~~~-~~~~~~~ 517 (574)
..| .-.||.+
T Consensus 85 A~CL~al~Dp~ 95 (153)
T TIGR02561 85 ALCLNAKGDAE 95 (153)
T ss_pred HHHHHhcCChH
Confidence 334 3344443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.69 E-value=27 Score=36.03 Aligned_cols=246 Identities=11% Similarity=0.014 Sum_probs=131.1
Q ss_pred HhCCCchHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC-----CcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 306 AQNGQPDEAVKIFSDMCS-------KNVQPDEFILVSLMSACSQVG-----NLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 306 ~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
....+++.|+..|+.+.+ .| .......+..+|.+.. +.+.|..++....+.|.+.. ...++
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a----~~~lg 332 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA----QYLLG 332 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH----HHHHH
Confidence 344566777777766655 33 2223344445554433 33456666666666554432 22233
Q ss_pred HHhHhc---CCHHHHHHHHhhCCC-CChhHHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 374 DMNAKC---GNMDRAAELFETMPN-RDVVSYCSMIKGLS----IHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 374 ~~~~~~---g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
..+... .+...|.++|...-+ ..+..+-.+..+|. ...+.+.|..++++..+.| .|...--...+..+..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 333322 356677777776653 33333333333332 2346778888888888877 4443222233333444
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH---hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL---GR----TGHLKSAYELLNSMPVEPHASAWGALLGACKL----YS 514 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 514 (574)
+.++.+.-.+..+... +.......-..+.... .. ..+.+.+...+.+...+-+......+...|.. ..
T Consensus 411 ~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 411 GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCC
Confidence 6666666655555543 3322211111111111 11 22555666666666444455555555544432 34
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-C--CchHHHHHHHHHHhCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATA-D--RWLDVCLVRSKMKERG 564 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~~ 564 (574)
+++.|...+.++.... ......|+.++... | ++..|.+++++..+.+
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 6888888888887766 77777787776531 1 2678888888776543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.68 E-value=2.9 Score=30.53 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 413 GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 413 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
.-++.+-++.+....+.|++......+.+|.+.+++..|.++|+..+.+.+ .+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 335666677777778899999999999999999999999999998886433 3455666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.60 E-value=5.7 Score=29.26 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH
Q 046956 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 333 (574)
+..+...|++++|..+.+....||...|.+|.. -+.|..+++..-+.+|..+| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345667888888888888888888888876654 35677777777777777665 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.7 Score=28.28 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 538 VLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 538 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999888654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.36 E-value=23 Score=34.86 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=57.9
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
|-...-+++..+.++..+.-+..+..+|...| .+...|..++.+|... ..+.--.+++++++....... .-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv--~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV--IGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH--HHHHHH
Confidence 33445566777777777777777777777654 4566777777777666 455666667766665443322 334455
Q ss_pred HHhHhcCCHHHHHHHHhhCC
Q 046956 374 DMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~ 393 (574)
..|.+ ++.+.+..+|.++.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHH-hchhhHHHHHHHHH
Confidence 55544 66666666665543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.15 E-value=57 Score=38.99 Aligned_cols=308 Identities=12% Similarity=0.034 Sum_probs=158.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhc----CCC--CcchHHHHHHHHHccCChHHHHHHHh-cCCCCchhHHHHHHHHHHhcCC
Q 046956 207 AMIVGYASVGDLVEAKTVFDLM----PER--SNVSWNALIGGLVKIGDLRSARQLFD-EMPERNVVSYTTMIDGYAKVGD 279 (574)
Q Consensus 207 ~li~~~~~~g~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 279 (574)
++..+-.+.+.+.+|+..++.- .+. ....+..+...|+..+++|....+.. ....|+ ....+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555666788999999999883 222 22344455558888888888777666 232222 2334556677899
Q ss_pred hHHHHHHHhhCCCC--C-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCCcchHHHHHHH
Q 046956 280 MTSARSLFEAAPDR--D-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVS-LMSACSQVGNLDLSNWVDSY 355 (574)
Q Consensus 280 ~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~ 355 (574)
+..|...|+.+.+. + ..+++-++......|.+..++...+-.... ..+....++. =..+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999999863 2 557888888777888888877766555443 2223333332 2233356677776666554
Q ss_pred HHHhCCCCChhhHHHHHHHHhHhcCCHHH--HHHHHhhCC----C---------CChhHHHHHHHHHHHcCChHHHHHHH
Q 046956 356 LSRSHMDLSRAHVIAALVDMNAKCGNMDR--AAELFETMP----N---------RDVVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~----~---------~~~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
..+...-. +. .++....+..+-+. -.+.++.+. . .-...|..++....-..- +.-.
T Consensus 1543 --~~n~e~w~--~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~~~--- 1613 (2382)
T KOG0890|consen 1543 --DRNIEYWS--VE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-ENSI--- 1613 (2382)
T ss_pred --cccccchh--HH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HHHH---
Confidence 11111111 11 12222222211110 001111111 0 011233443333221111 0001
Q ss_pred HHHHHCCCCCCHH------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-----cHHHHHHHHHHHhhcCCHHHHHH
Q 046956 421 DRMLSEGLTPDEV------AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-----SPEHYACMVDLLGRTGHLKSAYE 489 (574)
Q Consensus 421 ~~m~~~g~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~ 489 (574)
+.. .++.++.. .|..-+..-....+..+-+-.+++..-.....| -..+|...++...++|+++.|..
T Consensus 1614 ~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1614 EEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111 11233221 111111111111111111111111111101111 24678888888888999999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 490 LLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 490 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.+-.+...--+..+..........|+...|+.++++.++++
T Consensus 1692 all~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 77666322234455566677889999999999999999763
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.12 E-value=36 Score=36.67 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 046956 103 LWNTLLKGYSQNSRFIEVFTIFVRLIRE 130 (574)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 130 (574)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3888999999999999999999888764
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.68 Score=27.74 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688999999999999999999998864
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.03 E-value=40 Score=37.09 Aligned_cols=143 Identities=15% Similarity=0.082 Sum_probs=80.3
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046956 369 IAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448 (574)
Q Consensus 369 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 448 (574)
+....+.-.+.|-+++|..++..-.+.--..|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 334444445555566655555432222223444445555566777777777665322 12345667778888
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLF 527 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 527 (574)
++|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+...+|.. .+..+++...+++|.++.....
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 888888776654 22222233356777788888888888888776434322 1223344455666666555443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.32 E-value=10 Score=37.94 Aligned_cols=131 Identities=15% Similarity=0.038 Sum_probs=63.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 447 (574)
..+.++..+.+.|-.++|+++-.. ||. -.....+.|+.+.|.++..+ ..+..-|..|.++....|+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e------~~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVE------ANSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHh------hcchHHHHHHHHHHhhccc
Confidence 344455555555555555543211 111 11222345666666655443 2234566666666666777
Q ss_pred HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 448 VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
+..|.+.|..... |..|+-++...|+-+....+-...+.+ ...|....+|...|+++++.+++..
T Consensus 682 l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~---g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQ---GKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhh---cccchHHHHHHHcCCHHHHHHHHHh
Confidence 7777666665543 334444555555544333333222100 0112223455667777777666554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.29 E-value=2 Score=37.48 Aligned_cols=58 Identities=10% Similarity=-0.082 Sum_probs=38.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
...+...|++-++++...+.+...|.|..+|+.-+.+....=+.++|..-|....+..
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3445566777777777777777777777777777776666666666666666665543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.08 E-value=0.69 Score=37.62 Aligned_cols=84 Identities=8% Similarity=0.105 Sum_probs=46.0
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046956 107 LLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE 186 (574)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 186 (574)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++ ..+..-...+++.+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 455556666666666666666665544455666666777766666565555554 1111223345555555555
Q ss_pred hHHHHHHHccC
Q 046956 187 ISCARKVFDEM 197 (574)
Q Consensus 187 ~~~A~~~~~~~ 197 (574)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.4 Score=23.92 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
..+...+...|+++.|...++++++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344445555555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.32 E-value=16 Score=30.37 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=71.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHH-HHHHH--HHHHhhcCC
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPE-HYACM--VDLLGRTGH 483 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g~ 483 (574)
.+.+..++|+.-|..+.+.|...=+. ..........+.|+...|...|+++-.. .-.|-.. -...| ...+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45567788888888877766433222 2223334456778888888888887754 2222211 11111 234567778
Q ss_pred HHHHHHHHHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 484 LKSAYELLNSMP--VEPH-ASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 484 ~~~A~~~~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
+++...-.+-+. .+|- ...-..|.-+-.+.|++..|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 887777777662 2232 23334555666778888888888877665
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.09 E-value=33 Score=33.84 Aligned_cols=241 Identities=8% Similarity=0.006 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------cchHHHHHHHHHHh-CCCCChhhHHHHHHHHhHhcCCHHH-
Q 046956 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN------LDLSNWVDSYLSRS-HMDLSRAHVIAALVDMNAKCGNMDR- 384 (574)
Q Consensus 313 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~- 384 (574)
....+|++..+. .|+...+...|..|...-. +.....+++...+. +..+.....|..+...+.......+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334666666543 5566666666666543222 23334444444433 2333333356666666666554443
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHH-H-HHHHHhH
Q 046956 385 AAELFETMPNRDVVSYCSMIKGLSIH-GHGRQA-VSLFDRMLSEGLTPDEVAFTIVLTACSHVGL-VEDG-W-RFFEAMQ 459 (574)
Q Consensus 385 A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a-~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a-~-~~~~~~~ 459 (574)
|..+..+..+.+...|-.-+...... .+++-- ..++......=..+....|+... .|+ .+.. . .++....
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 33444355556666666555554422 122211 12222222211122222333333 122 1111 1 1222222
Q ss_pred hhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 460 NVYAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSMPV--EPHASAWGALLGAC--KLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 460 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
. ...|+. ..-+.+.+-+.+.|-..+|.+.+.++.. .|+...+..++..- ...-+..-+..+|+.++...-.++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 233443 3345677778888888899988888732 34556666666332 223347778888888887655778
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..|......-...|.-+.+-.++.++.+
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 8887777666788888888877766653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.03 E-value=4.7 Score=34.38 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=51.5
Q ss_pred hhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C---CCchhHHHHHHHHHhcCCchH
Q 046956 479 GRTGHLKSAYELLNSMPVEP--HASAWGALLGACKLYSDIELGELVANRLFELE-P---QNAGSYVLLSNIYATADRWLD 552 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p---~~~~~~~~l~~~~~~~g~~~~ 552 (574)
.+.|+ ++|.+.|-.+...| +....-..+..|....|.++++.++-+++++. | -|+.++..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 45666666653222 33333344445555778999999999999873 3 368899999999999999998
Q ss_pred HH
Q 046956 553 VC 554 (574)
Q Consensus 553 a~ 554 (574)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.79 E-value=25 Score=36.23 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHhhcCCCCcHHHH
Q 046956 398 VSYCSMIKGLSIHG-----HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH-VGLVEDGWRFFEAMQNVYAIVPSPEHY 471 (574)
Q Consensus 398 ~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~ 471 (574)
.....+..+|.+.. +.+.|..++.+..+.| .|+...+...+..... ..+...|.++|..+.+. |..+. +
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A---~ 363 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHILA---I 363 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChHH---H
Confidence 34455555555532 5666888888877776 4555444333322222 24567788888777764 43322 2
Q ss_pred HHHHHHHh----hcCCHHHHHHHHHhC
Q 046956 472 ACMVDLLG----RTGHLKSAYELLNSM 494 (574)
Q Consensus 472 ~~l~~~~~----~~g~~~~A~~~~~~~ 494 (574)
-.+..+|. -..+.+.|..++++.
T Consensus 364 ~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 364 YRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 22222221 233566666666665
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.57 E-value=7.1 Score=35.61 Aligned_cols=90 Identities=12% Similarity=0.205 Sum_probs=64.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-R--------DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIV 438 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 438 (574)
....++..-....+++.++..+-++.. | ...+|-.++. .=++++++.++..=++.|+-||..+++.+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhHHHH
Confidence 344445555555677777777766652 2 2233333332 23667899999888899999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhHhh
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
++.+.+.+++.+|.++.-.|...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999998887777653
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.43 E-value=0.47 Score=43.44 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=26.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+.+.+.+....|++-+..+++++|++..-|-.-+.+....|+|++|...+....+.+
T Consensus 156 sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 156 SVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred ceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 344444444444444444455555444444444444444445555444444444433
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=49 Score=34.79 Aligned_cols=325 Identities=9% Similarity=-0.020 Sum_probs=150.1
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcc
Q 046956 170 DVFVGTSLIDLYGKRKEISCARKVFDEMP---ERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKI 246 (574)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (574)
+.........+....|+.++|......+- ......++.++..+.+.|.+.... +. .-+......
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w------------~R~~~al~~ 194 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YL------------ERIRLAMKA 194 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HH------------HHHHHHHHC
Confidence 33334445555566666555544444331 123445555666655555443322 11 112233445
Q ss_pred CChHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHH--HhCCCchHHHHHHHHHHH
Q 046956 247 GDLRSARQLFDEMPERN-VVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGY--AQNGQPDEAVKIFSDMCS 323 (574)
Q Consensus 247 ~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~ 323 (574)
|+...|..+...+ .++ ......++..+.+-.++ ...+.... ++...-..++.++ ....+.+.|..++.....
T Consensus 195 ~~~~lA~~l~~~l-~~~~~~~a~a~~al~~~p~~~---~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~ 269 (644)
T PRK11619 195 GNTGLVTYLAKQL-PADYQTIASALIKLQNDPNTV---ETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVR 269 (644)
T ss_pred CCHHHHHHHHHhc-ChhHHHHHHHHHHHHHCHHHH---HHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 6666666666655 332 22333444444333333 33333221 1111111111111 234456788888887644
Q ss_pred CC-CCCCHH--HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-h
Q 046956 324 KN-VQPDEF--ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD-V 397 (574)
Q Consensus 324 ~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~ 397 (574)
.. ..+... +...+.......+..+.+...+....... .+.. ....-+....+.++++.+...+..|.. .+ .
T Consensus 270 ~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~-~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~ 346 (644)
T PRK11619 270 AQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTS-LLERRVRMALGTGDRRGLNTWLARLPMEAKEKD 346 (644)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcH-HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCH
Confidence 32 322222 22233222223222444544444433221 1222 455555566678888888888888762 11 1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH-HHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG-WRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
.-..=+.+++...|+.++|...|+++.. .. +|..++.+ .+.|..-.- ......-.. .+..++ -..-+.
T Consensus 347 rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~--~~~~~~--~~~ra~ 415 (644)
T PRK11619 347 EWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDS--ALTQGP--EMARVR 415 (644)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhh--hhccCh--HHHHHH
Confidence 1122245565667888888888888643 12 23333221 112211000 000000000 000001 112244
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
.+...|...+|...+..+....+......+.......|.++.++....+.
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 56677888888887776633345555555656667788888887766544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.92 E-value=27 Score=31.81 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=33.3
Q ss_pred CCCcchHHHHHHHHHcCCChHHHHHHHccCCC-----CChhhHHHHHHHHHhcCChHHHHHHHh
Q 046956 168 DEDVFVGTSLIDLYGKRKEISCARKVFDEMPE-----RNVVSWTAMIVGYASVGDLVEAKTVFD 226 (574)
Q Consensus 168 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~ 226 (574)
.++..+...++..+++.+++.+-.++++.... .|...|..+|......|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 45555555566666666666666665554432 355566666666666666555555444
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=65 Score=35.75 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=8.8
Q ss_pred cHHHHHHHHHHHhhcCCHH
Q 046956 467 SPEHYACMVDLLGRTGHLK 485 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~ 485 (574)
+...-...+.++...|..+
T Consensus 788 d~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 788 DPLVRAAALAALAELGCPP 806 (897)
T ss_pred CHHHHHHHHHHHHhcCCcc
Confidence 3444444445555554433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.06 E-value=6.1 Score=28.95 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=43.6
Q ss_pred CchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046956 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179 (574)
Q Consensus 116 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 179 (574)
+.-++.+-+..+......|+.....+.+++|.+.+++..|.++++-.+... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 334566666777777788888888888888888888888888888776432 223445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=84.73 E-value=2.5 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
|+.+.+..+|+++++..|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999999888887654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.73 E-value=16 Score=37.76 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=61.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEV---AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 483 (574)
|...+..+.|.++|++.-+ +.|+.. .+..|+.+-.+. ++...+ +... | -.|-..+++.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~--Fens~E----lq~I-g--------mkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH--FENSLE----LQQI-G--------MKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--ccchHH----HHHH-H--------HHHHHHhhccch
Confidence 3344556778888888777 677664 233333332211 111111 1110 1 123445678888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 484 LKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 484 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
++.-.++++-. ..+.+-.-.+|+.+|++..+.+.+++|+....-..
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKST 405 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence 87777766542 23344556789999999999999999885443333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.14 E-value=58 Score=34.10 Aligned_cols=171 Identities=9% Similarity=0.066 Sum_probs=96.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCC---CcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046956 107 LLKGYSQNSRFIEVFTIFVRLIREEAVP---DKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK 183 (574)
Q Consensus 107 ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 183 (574)
-+..+.+.+.+++|+..-+.-... .| -.......|..+...|++++|....-.|... +..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 356678889999998887665432 33 2344566677777888888888777776532 34445555555555
Q ss_pred CCChHHHHHHHccCCC-CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCC
Q 046956 184 RKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPER 262 (574)
Q Consensus 184 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (574)
.++......++=.-.. -+...|..++..+.. . .-..+++...+.+...|+.+.-.-+...++.+ - ..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~---~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q-------~-Se 503 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-S---DVKGFLELIKEWPGHLYSVLTIISATEPQIKQ-------N-SE 503 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-H---HHHHHHHHHHhCChhhhhhhHHHhhcchHHHh-------h-cc
Confidence 5554443333222221 245567777777776 2 22233333334444444433221111111111 1 12
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCH
Q 046956 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDV 295 (574)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 295 (574)
+...-..|+..|...+++++|+.++-.+.+.++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 233444588888999999999998888876543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.13 E-value=3.3 Score=41.03 Aligned_cols=100 Identities=16% Similarity=0.068 Sum_probs=70.7
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPS--PEHYACMVDLLGRTGHLKSAYELLNSM-PV-EPHASAWGALLGACKLYSDIEL 518 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 518 (574)
...|+...|...+..+... .|- ....-.|+..+.+.|...+|-.++... .+ ...+.++..+..++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3458888888888777643 332 233445677777888888888777554 21 2234566677788888889999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 519 GELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
|++.+++++++.|+++.+-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998888877765544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.96 E-value=31 Score=30.85 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=108.3
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCcchHHHHHHHHHH---hC--CCCChhhHHHHHHHHhHh
Q 046956 307 QNGQPDEAVKIFSDMCSKNVQPDE---FILVSLMSACSQVGNLDLSNWVDSYLSR---SH--MDLSRAHVIAALVDMNAK 378 (574)
Q Consensus 307 ~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~~l~~~~~~ 378 (574)
+...+++|+.-|++..+..-.-.. .....++....+.+++++....+..+.. +. ...+.. ..+.+++....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK-sIN~IlDyiSt 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK-SINSILDYIST 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHhh
Confidence 345788999999888765322223 3344567777888888888777776652 11 122233 56666666666
Q ss_pred cCCHHHHHHHHhhCCC-----CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCH-------HHHHHH
Q 046956 379 CGNMDRAAELFETMPN-----RDVV----SYCSMIKGLSIHGHGRQAVSLFDRMLSEGL----TPDE-------VAFTIV 438 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~~-------~~~~~l 438 (574)
..+.+--.++++.-.+ .+.. +-..+...|...+++.+...+++++...-- ..|. ..|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 6666666655554331 2222 234566777777778888888877765311 1121 245555
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH----HHhhcCCHHHHHH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD----LLGRTGHLKSAYE 489 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~~ 489 (574)
+..|....+-..-..+|++......--|.+.....+-. ...+.|++++|-.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 66676677777777777776654344566655544322 3456677777654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.72 E-value=6 Score=29.32 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=38.2
Q ss_pred HHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046956 119 EVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179 (574)
Q Consensus 119 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 179 (574)
+..+-+..+......|+.....+.+++|.+.+++..|.++|+-++..- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566666667777888888888888888888888888888776552 233336666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.70 E-value=2 Score=23.17 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 535 GSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
..+..++.++...|++++|...+++..+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467889999999999999999999887643
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=83.67 E-value=43 Score=32.24 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=29.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC-CchhHHHHHHHHH-hcCCchHHHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLFELEPQ-NAGSYVLLSNIYA-TADRWLDVCLVRSKM 560 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 560 (574)
..+.+.|-+..|.+..+-++.++|. ||......++.|. +.++++--.++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4455666666666666666666666 5555555554443 445555444444443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.47 E-value=6.7 Score=36.10 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-P---VEP--HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
.+|.-=++-|.+..++..|...|.+. . ..| +...|..-..+-...|++..++.-..+++..+|.+..+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34445566777888888888888765 1 123 34455555555667889999999999999999999999998888
Q ss_pred HHHhcCCchHHHHHHHHH
Q 046956 543 IYATADRWLDVCLVRSKM 560 (574)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~ 560 (574)
++....++++|....++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888888877776665543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.87 E-value=13 Score=31.74 Aligned_cols=73 Identities=10% Similarity=0.004 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhc--CCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY--AIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
+.|...|-++...+.--++.....|...|. ..+.+++.+++..+.+.. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555554443333333333333332 455555555555554421 1134455555555555555555554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.19 E-value=70 Score=33.60 Aligned_cols=48 Identities=13% Similarity=-0.014 Sum_probs=38.4
Q ss_pred HhcCCHHHHHHHHHHHHhhC---CC------CchhHHHHHHHHHhcCCchHHHHHHH
Q 046956 511 KLYSDIELGELVANRLFELE---PQ------NAGSYVLLSNIYATADRWLDVCLVRS 558 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (574)
...+++..+....+.+.+.. |. .+..+...|..+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46788999999998887652 22 35667788888889999999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.12 E-value=6.8 Score=35.73 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=58.6
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC-CCC------hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 046956 62 KKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV-NPN------TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVP 134 (574)
Q Consensus 62 ~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 134 (574)
..|.+....+...++ ..-....+++++...+-.+. .|+ ..++. .+ -++-.-++++++.++..=++-|+.|
T Consensus 57 ~~g~~~s~~~Vd~~V-~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~i-rlllky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLV-DVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WI-RLLLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred hcCCCcceeehhhhh-hccccccchhHHHHHHHHHhcCcchhhhccccHHH-HH-HHHHccChHHHHHHHhCcchhcccc
Confidence 345555555555555 44444556666666654443 121 11111 11 1223445667777777777777777
Q ss_pred CcchHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 046956 135 DKYTFPLVIKACSHVLSVREGTAIHAAVIRWG 166 (574)
Q Consensus 135 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 166 (574)
|.+++..++..+.+.+++..|.++...|....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766665543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.95 E-value=18 Score=31.26 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhh-cCCCCcHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNV-YAIVPSPEHYACMVD 476 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~ 476 (574)
+.+..++.+.+.+...+++...++-++. +|. .-+-..++..++-.|++++|..-++-+-+. ....+....|..+++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455667778888899999888887774 454 446777888888899999998887766532 022233455665554
Q ss_pred HHhhcCCHHHHH-HHHHhC--C---CCCCHHHHHHHH-HH--HHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 477 LLGRTGHLKSAY-ELLNSM--P---VEPHASAWGALL-GA--CKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 477 ~~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~l~-~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
+- .+. ++|..- + ..| ...|...+ .+ +..-|..+....+-+.+++..|..+.
T Consensus 81 ~e-------a~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 81 CE-------AARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HH-------HHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 42 222 233322 1 112 33343333 33 33334455566666777777666543
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=81.95 E-value=18 Score=26.75 Aligned_cols=79 Identities=11% Similarity=0.068 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC
Q 046956 150 LSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP 229 (574)
Q Consensus 150 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 229 (574)
...++|..+-+.+...+- ....+--.-+..+.+.|++++|..+.+.+.-||...|-+|... +.|..++...-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 356777777776665441 1222223334567788999999999999988999998777654 5677776666665555
Q ss_pred CC
Q 046956 230 ER 231 (574)
Q Consensus 230 ~~ 231 (574)
..
T Consensus 96 ~s 97 (115)
T TIGR02508 96 AS 97 (115)
T ss_pred hC
Confidence 44
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.77 E-value=52 Score=31.82 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHhhCCC----CChhHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHH
Q 046956 379 CGNMDRAAELFETMPN----RDVVSYCSMIKGL-SIHGHGRQAVSLFDRMLSEGLTPDE----VAFTIVLTACSHVGLVE 449 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~ 449 (574)
.|+..+|.+.+..+.. +....+-.|+.+- ....+..+|+.+|+...- ..|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888889988888873 3445566666554 345788999999998765 34543 24555555678889999
Q ss_pred HHHHHHHHhHhhcCCCCcHHHHHH-HHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 450 DGWRFFEAMQNVYAIVPSPEHYAC-MVDLLGRTG---HLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 450 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
++..+-....+.|...|-...|.. +...+.+.+ ..+.-..++..|...--...|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988888887776555554433332 333333333 4445556666663222345677777888889999999999999
Q ss_pred HHhhCCCCchhHHHHHHHH-----HhcCCchHHHHHHHHHHhCC
Q 046956 526 LFELEPQNAGSYVLLSNIY-----ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~ 564 (574)
+..+... ...-...+.+| .-..+.+++.+.++.+....
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhh
Confidence 9988522 22222222223 34556777777776655443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.44 E-value=3 Score=21.96 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=9.2
Q ss_pred HHHHHHhhcCCHHHHHHHH
Q 046956 473 CMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~ 491 (574)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444445555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=80.63 E-value=27 Score=27.71 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHHhhcCCHH---HHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 465 VPSPEHYACMVDLLGRTGHLK---SAYELLNSM-P-VEPH--ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
.++..+--.+..++.+..+.+ +.+.+++.+ + ..|+ ......+.-++.+.++++.++++.+.+++..|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344444455555665554433 344455554 2 2232 22333444667778888888888888888888776654
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=80.48 E-value=62 Score=31.82 Aligned_cols=231 Identities=8% Similarity=-0.006 Sum_probs=108.1
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCh
Q 046956 108 LKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEI 187 (574)
Q Consensus 108 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 187 (574)
|.++...| +.++..+....... ++...+.....++....+......+.+.+ . .++..+.....++++..++.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L-~---d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL-Q---AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh-c---CCCHHHHHHHHHHHhcCCch
Confidence 56666666 45666666655432 22333333333333222222122222222 1 34555667777777777776
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHH
Q 046956 188 SCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSY 267 (574)
Q Consensus 188 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 267 (574)
.....+..-+..++.......+.++...+. +-...+..-+..+|...-...+.++...+..+....+...+...|..+-
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR 195 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVR 195 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHH
Confidence 666665555555555554455555544331 1111222222334444445555555555554433333333434555555
Q ss_pred HHHHHHHHhcCChHHHHHHHhh-CCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCc
Q 046956 268 TTMIDGYAKVGDMTSARSLFEA-APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNL 346 (574)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 346 (574)
..-+.+....|. .+|...+.. ...++......+...+... ..+++...+..+.+.. .+-...+.++...|+.
T Consensus 196 ~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d~-----~vr~~a~~AlG~lg~p 268 (410)
T TIGR02270 196 FAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGPDAQAWLRELLQAA-----ATRREALRAVGLVGDV 268 (410)
T ss_pred HHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-CchhHHHHHHHHhcCh-----hhHHHHHHHHHHcCCc
Confidence 555666666666 444444443 3333333333333333222 2335555555554331 1344455555555555
Q ss_pred chHHHHHH
Q 046956 347 DLSNWVDS 354 (574)
Q Consensus 347 ~~a~~~~~ 354 (574)
..+..+..
T Consensus 269 ~av~~L~~ 276 (410)
T TIGR02270 269 EAAPWCLE 276 (410)
T ss_pred chHHHHHH
Confidence 44444333
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=80.07 E-value=6.6 Score=29.05 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=37.5
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC----C-----chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 510 CKLYSDIELGELVANRLFELEPQ----N-----AGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..+.||+..|.+.+.+....... . ..+...++.++...|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888887777776664211 1 23456678888899999999998888764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 9e-11
Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 10/197 (5%)
Query: 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAA 371
A + P E L L+ +LD+ S++ + + ++A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA- 132
Query: 372 LVDMNAKCGNMDRAAELFETMPNR-------DVVSYCSMIKGLSIHGHGRQAVSLFDRML 424
+ A L + + Y +++ G + G ++ V + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 425 SEGLTPDEVAFTIVLTACSHVG-LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483
GLTPD +++ L R E M + A ++ R
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATV 251
Query: 484 LKSAYELLNSMPVEPHA 500
LK+ +++ + + P
Sbjct: 252 LKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 3e-10
Identities = 21/207 (10%), Positives = 63/207 (30%), Gaps = 8/207 (3%)
Query: 300 ALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS 359
L+ D + + L++ C L L++ +
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156
Query: 360 HMDLSRAHVIA--ALVDMNAKCGNMDRAAELFETMPNR----DVVSYCSMIKGLSIHGHG 413
+ A++ A+ G + + + D++SY + ++ +
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD 216
Query: 414 RQAVS-LFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYA 472
+ ++M EGL + ++L+ +++ + ++ +P P + +
Sbjct: 217 AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF-SLPPQLPPPVNTS 275
Query: 473 CMVDLLGRTGHLKSAYELLNSMPVEPH 499
++ + S +L +
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKTLQC 302
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 6e-07
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 7/92 (7%)
Query: 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-------DVVAWSALISGYAQNGQPDE 313
+ A L + + ++A++ G+A+ G E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345
V + + + PD + + +
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 8e-07
Identities = 15/171 (8%), Positives = 54/171 (31%), Gaps = 16/171 (9%)
Query: 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKV 193
P + +++ LS+ A + + + ++ A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 194 FDEMPER-------NVVSWTAMIVGYASVGDLVEAKTVFDLMPERS----NVSWNALIGG 242
+ + + A+++G+A G E V ++ + +S+ A +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 243 LVKIG-DLRSARQLFDEMPERNV----VSYTTMIDGYAKVGDMTSARSLFE 288
+ + D + + ++M + + + ++ + + + +
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.4 bits (116), Expect = 3e-06
Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 12/123 (9%)
Query: 230 ERSNVSWNALIGGLVKIGDLRSARQLFDEMPER-------NVVSYTTMIDGYAKVGDMTS 282
A + L A L + + Y ++ G+A+ G
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 283 ARSLFEAAPDR----DVVAWSALISGYAQNGQPDEAV-KIFSDMCSKNVQPDEFILVSLM 337
+ D D+++++A + + Q + + M + ++ L+
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 338 SAC 340
S
Sbjct: 244 SEE 246
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 68/542 (12%), Positives = 161/542 (29%), Gaps = 161/542 (29%)
Query: 54 HQVHSHIIKKGLEQDHS---LVAHFISL------CHSLATPLS--YSTAVFNRIVN-PNT 101
H H H+ + E + +++ F C + S + I+ +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 102 ------FLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155
W L K +F+ EE + Y F L+
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFV-----------EEVLRINYKF-LM------------- 95
Query: 156 TAIHAAVIRWGVDEDVFVGT-----SLIDLYGKR-----KEISCARKVFDEM-PERNVVS 204
+ I + + +++ + ++ K + R+ E+ P +NV+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL- 154
Query: 205 WTAMIVGYASVG------DLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDE 258
I G G D+ + V M + W + + + S + +
Sbjct: 155 ----IDGVLGSGKTWVALDVCLSYKVQCKMD--FKIFW-------LNLKNCNSPETVLEM 201
Query: 259 MPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF 318
+ + Y + ++ ++ + + + ++ + + +
Sbjct: 202 L---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--------LRRLLKSKPYENCLLVL 250
Query: 319 SDMCSKNVQPDEF-----ILVSLMSACSQVGNLDLSNWVDSYLSRSHMD--LSRAHVIAA 371
++ + + F IL++ + QV + LS +++S H L+ V +
Sbjct: 251 LNVQNAKAW-NAFNLSCKILLT--TRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 372 LVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TP 430
L K + + +P + + +S+ + +GL T
Sbjct: 307 L----LKYLDCR-----PQDLPRE-------------VLTTNPRRLSIIAESIRDGLATW 344
Query: 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490
D HV + + +++ ++ E + ++
Sbjct: 345 DNW---------KHV----NCDKLTTIIESSLNVLEPAE--------------YRKMFDR 377
Query: 491 LNSMPVEPHASA------WGALLGACKLYSDIE--LGELVANRLFELEPQNAGSYVLLSN 542
L+ P H W + + SD+ + +L L +E Q S + + +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDV-----IKSDVMVVVNKLHKYSL--VEKQPKESTISIPS 430
Query: 543 IY 544
IY
Sbjct: 431 IY 432
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 55/387 (14%), Positives = 98/387 (25%), Gaps = 131/387 (33%)
Query: 32 PKPSCLL-----SALTLIK----KCKL-----------------QTHLHQVHSHIIKKGL 65
P +CLL CK+ TH+ H L
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH---HSMTL 298
Query: 66 EQDHS--LVAHFISL-CHSLA------TPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSR 116
D L+ ++ L P S + T W+ + +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWK--HVNCDK 354
Query: 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSV-REGTAIHAAV--IRWG--VDEDV 171
+ + ++ P + LSV I + + W + DV
Sbjct: 355 LTTIIESSLNVLE----------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 172 ------FVGTSLIDLYGKRKEISC------ARKVFDEMPE--RNVV----------SWTA 207
SL++ K IS + + R++V S
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 208 MI----------VGY-ASVGDLVEAKTVFDLMPE-------------RSNVSWNALIGGL 243
+ +G+ + E L + +WNA L
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPER---MTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 244 VKIGDLRSARQLF---DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSA 300
+ L+ + D ER V + + + +L + D++ A
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE--------NLIC-SKYTDLLR-IA 571
Query: 301 LISGYAQNGQPDEAVKIFSDMCSKNVQ 327
L+ DEA+ + K VQ
Sbjct: 572 LM-------AEDEAI---FEEAHKQVQ 588
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 52/379 (13%), Positives = 106/379 (27%), Gaps = 62/379 (16%)
Query: 201 NVVSWTAMIVGYASVGDLVEAKTVFD----LMPERSNVSWNALIGGLVKIGDLRSARQLF 256
VV+ + G ++ + V L P++ V+ + GG + ++ +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV-VAIASHDGGKQALETVQRLLPVL 129
Query: 257 DE----MPERNVVSYTTMIDGYAKVGDMTSARSLFEAA----PDRDVVAWSALISGYAQN 308
+ PE VV+ + G + + + + A P+ VVA ++ G
Sbjct: 130 CQAHGLTPE-QVVAIASHDGGKQALETVQALLPVLCQAHGLTPE-QVVAIASNGGGKQAL 187
Query: 309 GQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLS------------NWVDSYL 356
+ + Q + S + + V +
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVV-AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 246
Query: 357 SR--SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR 414
S L V L + +A L P VV+ S G +
Sbjct: 247 SNGGGKQALET--VQRLLPV-------LCQAHGL---TPQ-QVVAIASNSGGKQALETVQ 293
Query: 415 QAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEH--- 470
+ + + + GLTP +V A + V+ A +P+
Sbjct: 294 RLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLLPVLCQ-----AHGLTPQQVVA 346
Query: 471 YACMVDLLGRTGHLKSAYELLN-SMPVEP-HASAWGALLGACKLYSDIE-LGELVA--NR 525
A ++ +L + + P A + G +E + L+ +
Sbjct: 347 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG---KQALETVQRLLPVLCQ 403
Query: 526 LFELEPQNAGSYVLLSNIY 544
L P+ +
Sbjct: 404 AHGLTPEQVVAIASHDGGK 422
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 21/212 (9%), Positives = 54/212 (25%), Gaps = 46/212 (21%)
Query: 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAA-----PDRDVVAWSALISGYAQNGQPD 312
+ E++ D A +++E A ++ + A + +
Sbjct: 58 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL-YFAYADYEESRMKYE 116
Query: 313 EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD-----LSNWVDSYLSRSHM------ 361
+ I++ + + + + M + + + +R H+
Sbjct: 117 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176
Query: 362 -------DLSRA---------------HVIAALVDMNAKCGNMDRAAELFETMPNRDVVS 399
D S A + A +D + + LFE + +
Sbjct: 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236
Query: 400 -------YCSMIKGLSIHGHGRQAVSLFDRML 424
+ + S G + + R
Sbjct: 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRF 268
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.26 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.24 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.2 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.13 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.1 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.06 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.06 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.96 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.96 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.95 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.89 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.88 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.88 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.87 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.87 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.85 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.85 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.82 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.8 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.78 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.75 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.72 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.71 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.71 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.7 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.7 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.66 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.66 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.65 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.64 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.6 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.57 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.57 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.55 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.53 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.51 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.5 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.49 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.44 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.44 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.43 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.42 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.42 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.37 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.34 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.31 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.27 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.22 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.22 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.18 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.1 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.02 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.98 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.82 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.81 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.81 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.71 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.59 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.45 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.44 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.41 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.39 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.35 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.31 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.3 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.11 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.07 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.02 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.69 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.46 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.34 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.17 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.13 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.44 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 95.3 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.17 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.04 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.89 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.1 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.01 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 93.7 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 93.53 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 93.47 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.23 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.85 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.79 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.41 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.38 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.98 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 91.73 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.53 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.92 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.67 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.35 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.1 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.93 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.74 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.7 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.62 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.31 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.01 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.14 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 87.77 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.28 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.23 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 87.2 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.35 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.13 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.12 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.34 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.84 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 82.44 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.0 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-43 Score=363.07 Aligned_cols=477 Identities=8% Similarity=-0.017 Sum_probs=392.6
Q ss_pred HHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHH
Q 046956 79 CHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAI 158 (574)
Q Consensus 79 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 158 (574)
.+.+.|.+..+...|+.++.+++..|+.++..+.+.|++++|+.+|++|.+. .|+..++..++.+|...|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 3456788888899999998899999999999999999999999999999854 57888999999999999999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCC-------------------ChhhHHHHHHHHHhcCChH
Q 046956 159 HAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER-------------------NVVSWTAMIVGYASVGDLV 219 (574)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 219 (574)
|+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 678899999999999999999999999965443 3789999999999999999
Q ss_pred HHHHHHhhcCCCC---cchHHHHHHHHHccCChHHHHHH---HhcCCC----CchhHHHHHHHHHHhcCChHHHHHHHhh
Q 046956 220 EAKTVFDLMPERS---NVSWNALIGGLVKIGDLRSARQL---FDEMPE----RNVVSYTTMIDGYAKVGDMTSARSLFEA 289 (574)
Q Consensus 220 ~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (574)
+|+++|++|.+.+ ...+..+...+...+..+.+... +..+.+ ....+|+.++..|.+.|++++|.++|++
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 9999999997643 33444444433333222221111 111111 2334566678889999999999999999
Q ss_pred CCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhh
Q 046956 290 APD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAH 367 (574)
Q Consensus 290 ~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 367 (574)
+.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+..... . .
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~ 374 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK-A-V 374 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-H-H
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc-H-H
Confidence 987 789999999999999999999999999998765 3467789999999999999999999999998765432 3 3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 78899999999999999999999876 3467899999999999999999999999999864 4567899999999999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPH--ASAWGALLGACKLYSD 515 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~ 515 (574)
.|++++|.++|+++.+ ..+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999997 34557899999999999999999999999988 34677 7899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+++|++.++++++.+|+++.++..++.+|...|++++|.+.++++.+.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999988654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=336.67 Aligned_cols=473 Identities=8% Similarity=0.011 Sum_probs=401.0
Q ss_pred CCchhHHHHHHHHHHhcCCChHHHHHHhhccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHH
Q 046956 66 EQDHSLVAHFISLCHSLATPLSYSTAVFNRIV--NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVI 143 (574)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 143 (574)
.++...++.++ ..|.+.|++++|..+|+++. .|+..+|..++.++.+.|++++|..+|+++... .++..+++.++
T Consensus 81 ~~~~~~~~~~~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 81 LSREDYLRLWR-HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp -CHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 46788899999 99999999999999999985 578899999999999999999999999998654 56888999999
Q ss_pred HHHhccCCcHHHHHHHHHHHHh---------------CCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--C-ChhhH
Q 046956 144 KACSHVLSVREGTAIHAAVIRW---------------GVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--R-NVVSW 205 (574)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 205 (574)
.++.+.|++++|.++|+++... |.+.+..+|+.++.+|.+.|++++|..+|+++.+ | +...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 1233578999999999999999999999999975 3 34455
Q ss_pred HHHHHHHHhcCChHHHHHH---HhhcCCC----CcchHHHHHHHHHccCChHHHHHHHhcCCC--CchhHHHHHHHHHHh
Q 046956 206 TAMIVGYASVGDLVEAKTV---FDLMPER----SNVSWNALIGGLVKIGDLRSARQLFDEMPE--RNVVSYTTMIDGYAK 276 (574)
Q Consensus 206 ~~li~~~~~~g~~~~a~~~---~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 276 (574)
..+...+...+..+.+... +..+... ...+|+.++..|.+.|++++|.++++.+.+ ++..+++.++..|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 5555544433332222111 2222222 233566668888999999999999998766 889999999999999
Q ss_pred cCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHH
Q 046956 277 VGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353 (574)
Q Consensus 277 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 353 (574)
.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998763 467889999999999999999999999998653 557889999999999999999999999
Q ss_pred HHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046956 354 SYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP 430 (574)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 430 (574)
+.+.+..+.. ...+..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|...|++++|.++|+++.+.. +.
T Consensus 397 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 397 SKSSTMDPQF--GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9998865442 2379999999999999999999999876 3577899999999999999999999999999853 44
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 046956 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AIVPS--PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAW 503 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 503 (574)
+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 67899999999999999999999999998742 44676 789999999999999999999999987 3344 78899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
..+..+|...|++++|.+.++++++++|+++.++..|+.+|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-28 Score=237.67 Aligned_cols=277 Identities=14% Similarity=0.122 Sum_probs=201.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC--C-CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPD--R-DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
+|..++..+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444444444444444444443321 1 23344455555555556666666665555432 2234555555556666
Q ss_pred cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSL 419 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~ 419 (574)
.|++++|...++.+.+.++.. ...+..++..+...|++++|...|++.. . .+..++..+...|...|++++|...
T Consensus 182 ~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665544332 2256677777777777777777777655 2 3567888889999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 046956 420 FDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVE 497 (574)
Q Consensus 420 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 497 (574)
|+++.+. .| +..++..+...+.+.|++++|...++++.+ ..+.+..++..++..+.+.|++++|.+.++++ ...
T Consensus 260 ~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 260 YRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999985 45 456899999999999999999999999997 45667889999999999999999999999987 445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 498 P-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 498 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
| +...+..+...+.+.|++++|+..++++++++|+++.++..++.++...|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 5 467888889999999999999999999999999999999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-27 Score=227.91 Aligned_cols=348 Identities=14% Similarity=0.106 Sum_probs=286.9
Q ss_pred HHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHccCChHHHHHHHh---cCCCCchhHHHHHHHHHHhcCChHHH
Q 046956 210 VGYASVGDLVEAKTVFDLMPE--R-SNVSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDMTSA 283 (574)
Q Consensus 210 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (574)
..+.+.|++++|++.++.+.+ | +...+..+...+...|++++|...++ ...+.+..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 344455555555555555432 2 22344444555555666666665555 22245678899999999999999999
Q ss_pred HHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhC
Q 046956 284 RSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSH 360 (574)
Q Consensus 284 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 360 (574)
++.|+++.. .+..+|..++.++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+..+.+..
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999987753 356789999999999999999999999998763 2245567778888999999999999999999876
Q ss_pred CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 046956 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFT 436 (574)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~ 436 (574)
+... ..+..++..+.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..+. .|+ ..++.
T Consensus 166 p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 241 (388)
T 1w3b_A 166 PNFA--VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHG 241 (388)
T ss_dssp TTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHH
Confidence 4433 3789999999999999999999998873 35678999999999999999999999999884 554 56899
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV-EPHASAWGALLGACKLYS 514 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~ 514 (574)
.+..++...|++++|...|+++.+ ..+.+..+|..++.++.+.|++++|.+.++++ .. ..+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 999999999999999999999997 44456788999999999999999999999988 33 346788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
++++|+..++++++..|+++.++..++.+|.+.|++++|...++++.+..
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999998754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=228.63 Aligned_cols=185 Identities=12% Similarity=0.185 Sum_probs=170.1
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------cchHHHHHHHHHHhCCCCCh
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN---------LDLSNWVDSYLSRSHMDLSR 365 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 365 (574)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+. ++.|..+|+.|.+.|+.|+.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346788899999999999999999999999999999999999999987665 46788999999999999998
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046956 366 AHVIAALVDMNAKCGNMDRAAELFETMP----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA 441 (574)
Q Consensus 366 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 441 (574)
. +|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+
T Consensus 106 ~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 106 A-TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp H-HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 8 99999999999999999999999886 489999999999999999999999999999999999999999999999
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
|++.|++++|.+++++|.+. +..|+..+|+.++..+...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999997 9999999999999888653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=220.63 Aligned_cols=430 Identities=10% Similarity=-0.008 Sum_probs=225.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 046956 103 LWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYG 182 (574)
Q Consensus 103 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 182 (574)
.|......+.+.|++++|+..|+++.+.. |+...|..+..++...|++++|...++.+++.+ +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45555666667777777777777776653 566666666666777777777777777776654 334556666667777
Q ss_pred cCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCC----CcchHHH---HHHHHHccCChHHH
Q 046956 183 KRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPER----SNVSWNA---LIGGLVKIGDLRSA 252 (574)
Q Consensus 183 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~---l~~~~~~~~~~~~a 252 (574)
..|++++|...|+++.. .+......++..+........+.+.+..+... +...+.. ..............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777776666543 22223333333333222222222211111100 0000000 00000011111111
Q ss_pred HHHHhcC---------CC-CchhHHHHHHHHHHh---cCChHHHHHHHhhCCC----------------C-CHhHHHHHH
Q 046956 253 RQLFDEM---------PE-RNVVSYTTMIDGYAK---VGDMTSARSLFEAAPD----------------R-DVVAWSALI 302 (574)
Q Consensus 253 ~~~~~~~---------~~-~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li 302 (574)
...+... .. .+...+......+.. .|++++|+..|+++.+ + +..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 1111111 01 123344444444443 6667777666655433 1 234556666
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCH
Q 046956 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382 (574)
Q Consensus 303 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 382 (574)
..+...|++++|...|+++.+.. |+...+..+...+...|+++.|...++.+.+....... ++..++..+...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS--VYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH--HHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH--HHHHHHHHHHHhCCH
Confidence 66666677777777666666543 22555666666666666666666666666654433222 455666666666666
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 383 DRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 383 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
++|...++++. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666543 2234555666666666666666666666665531 2233455556666666666666666666655
Q ss_pred hhcCCCCc----HHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 460 NVYAIVPS----PEHYACMVDLLGR---TGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 460 ~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
+...-.++ ...+..++..+.. .|++++|.+.++++ ...| +...+..+...+...|++++|...++++++++
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 43111111 2255556666666 66666666666555 2222 34455555566666666666666666666666
Q ss_pred CCCchhHHHH
Q 046956 531 PQNAGSYVLL 540 (574)
Q Consensus 531 p~~~~~~~~l 540 (574)
|+++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 6655555544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-24 Score=218.92 Aligned_cols=431 Identities=9% Similarity=-0.018 Sum_probs=299.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046956 101 TFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDL 180 (574)
Q Consensus 101 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 180 (574)
...|..+...+.+.|++++|+..|+++.+... .+...|..+..++...|++++|.+.++.+++.+ +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45677788888999999999999999888743 366788888888889999999999999998876 4467788888999
Q ss_pred HHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCC------CcchHHHHHHHHHccCChHHHHH
Q 046956 181 YGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPER------SNVSWNALIGGLVKIGDLRSARQ 254 (574)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 254 (574)
+...|++++|...|+.+ ..+.......+..+...+...+|+..++.+... ........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999644 322223333455566666678888888888653 12223445555666777777777
Q ss_pred HHhcCCCCchh---HHHHHHHHHHhc--------CChHHHHHHHhhCCC--CC--------HhHHHHHHHHHHhCCCchH
Q 046956 255 LFDEMPERNVV---SYTTMIDGYAKV--------GDMTSARSLFEAAPD--RD--------VVAWSALISGYAQNGQPDE 313 (574)
Q Consensus 255 ~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~ 313 (574)
.+......+.. ....+...+... |++++|..+|+++.+ |+ ..++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 77755343332 344444433322 478888888887655 22 2346667777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 314 AVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 314 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
|...|+++.+. .|+...+..+...+...|+++.|...+..+.+..+... .++..++..+...|++++|...|+++.
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP--PTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88888888875 45577777888888888888888888888887664432 267788888888888888888887765
Q ss_pred C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC----
Q 046956 394 N---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP---- 466 (574)
Q Consensus 394 ~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p---- 466 (574)
+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.....+
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 2 345677778888888888888888888887742 33445777778888888888888888888765411111
Q ss_pred cHHHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 467 SPEHYACMVDLLGRT----------GHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
....+.....++... |++++|...++++ ...| +...+..+...+...|++++|...+++++++.|+++
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 122244445666666 8888888888776 3333 456677777778888888888888888888888776
Q ss_pred hhHHH
Q 046956 535 GSYVL 539 (574)
Q Consensus 535 ~~~~~ 539 (574)
.....
T Consensus 497 ~~~~~ 501 (537)
T 3fp2_A 497 EKLQA 501 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=211.49 Aligned_cols=419 Identities=9% Similarity=-0.024 Sum_probs=311.3
Q ss_pred HHHhcCCChHHHHHHhhccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHH
Q 046956 78 LCHSLATPLSYSTAVFNRIV--NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREG 155 (574)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 155 (574)
..+.+.|++++|...|+++. .|+..+|..+..++.+.|++++|+..++++.+.+. .+...+..+..++...|++++|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHH
Confidence 77888999999999999986 58899999999999999999999999999988743 3567888899999999999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC----CChhhHHHH---HHHHHhcCChHHHHHHHhhc
Q 046956 156 TAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE----RNVVSWTAM---IVGYASVGDLVEAKTVFDLM 228 (574)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~ 228 (574)
...|+.+.+.+. ++......++..+........+.+.+..+.. ++...+... ............+...+...
T Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999999998863 4444444555544443333322222211110 110000000 00001111111122222222
Q ss_pred C---------CC-CcchHHHHHHHHHc---cCChHHHHHHHhcCCC-----------------CchhHHHHHHHHHHhcC
Q 046956 229 P---------ER-SNVSWNALIGGLVK---IGDLRSARQLFDEMPE-----------------RNVVSYTTMIDGYAKVG 278 (574)
Q Consensus 229 ~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g 278 (574)
. .+ +...+......+.. .|++++|...++.... .+..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 1 11 13344444444444 8999999999984322 23567888999999999
Q ss_pred ChHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHH
Q 046956 279 DMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYL 356 (574)
Q Consensus 279 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 356 (574)
++++|...|+++.+ |+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 252 ~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999987653 347889999999999999999999999998764 446678888999999999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-
Q 046956 357 SRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPD- 431 (574)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~- 431 (574)
.+..+.... .+..++..+...|++++|...++.+.+ .+...|..+...+...|++++|...++++.+... .++
T Consensus 331 ~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 331 KELDPENIF--PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHTCSSCSH--HHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHhChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 987655433 788999999999999999999998762 4667899999999999999999999999887421 111
Q ss_pred ---HHHHHHHHHHHhc---cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 046956 432 ---EVAFTIVLTACSH---VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAW 503 (574)
Q Consensus 432 ---~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 503 (574)
...+..+...+.. .|++++|...++++... .+.+...+..++.+|.+.|++++|.+.++++ ...|+....
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 3388899999999 99999999999999873 3456788899999999999999999999988 555664433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=216.25 Aligned_cols=200 Identities=14% Similarity=0.176 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC---------
Q 046956 312 DEAVKIFSDMCSKNVQPDE-FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN--------- 381 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------- 381 (574)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|..+|+.|.+.|+.|+.. +|+.|+.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~-tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQY-HYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhCCchhhhhhcch
Confidence 3455666777777766544 468889999999999999999999999999999998 99999999987664
Q ss_pred HHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046956 382 MDRAAELFETMP----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEA 457 (574)
Q Consensus 382 ~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 457 (574)
+++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 788999999987 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 046956 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM---PVEPHASAWGALLGACKLY 513 (574)
Q Consensus 458 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 513 (574)
|.+. |+.||..+|+.|+.+|++.|+.++|.+++++| +..|+..|++.++..+...
T Consensus 166 M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9997 99999999999999999999999999999999 6889999999999887653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-22 Score=200.32 Aligned_cols=333 Identities=12% Similarity=0.049 Sum_probs=241.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCCh
Q 046956 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDM 280 (574)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (574)
+...|..+...+.+.|++++|+.+|+++.+.+ +.+..++..++..|...|++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~l~~~~~~~g~~ 76 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD----------------------------PDNYIAYYRRATVFLAMGKS 76 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------CccHHHHHHHHHHHHHCCCH
Confidence 44567777777777777777777777654311 23455566666666666666
Q ss_pred HHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHh
Q 046956 281 TSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDE----FILVSL------------MSACS 341 (574)
Q Consensus 281 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~ 341 (574)
++|+..|+++.+ .+..+|..++.+|.+.|++++|...|+++.+. .|+. ..+..+ ...+.
T Consensus 77 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 77 KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665442 34556666777777777777777777776654 2332 333333 33467
Q ss_pred ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 046956 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVS 418 (574)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~ 418 (574)
..|++++|...++.+.+..+... .++..++.+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+.
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDA--ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78888888888888877654322 267888888888888888888888876 3567888999999999999999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHH------------HHHHhccCcHHHHHHHHHHhHhhcCCCCc--HHHHHHHHHHHhhcCC
Q 046956 419 LFDRMLSEGLTPDEV-AFTIV------------LTACSHVGLVEDGWRFFEAMQNVYAIVPS--PEHYACMVDLLGRTGH 483 (574)
Q Consensus 419 ~~~~m~~~g~~p~~~-~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 483 (574)
.|+++.+. .|+.. .+..+ ...+.+.|++++|...|+++.+.....+. ...+..++.++.+.|+
T Consensus 233 ~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 233 EVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC
Confidence 99999874 45443 44444 77889999999999999999874111111 4578889999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH------------HHHhcC-
Q 046956 484 LKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN------------IYATAD- 548 (574)
Q Consensus 484 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g- 548 (574)
+++|.+.++++ ...| +...|..+..+|...|++++|+..++++++++|+++.++..++. .|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999987 4445 57888999999999999999999999999999999999999984 455566
Q ss_pred ----CchHHHHHHHH-HHhCCCcc
Q 046956 549 ----RWLDVCLVRSK-MKERGLRK 567 (574)
Q Consensus 549 ----~~~~a~~~~~~-~~~~~~~~ 567 (574)
+.+++.+.+++ ..+..+.+
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCCC
Confidence 56677877776 44444433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-22 Score=198.32 Aligned_cols=301 Identities=14% Similarity=0.074 Sum_probs=256.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
+.+...+..++..|.+.|++++|+.+|+++.+ .+..+|..++.++...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 35567888999999999999999999998753 468899999999999999999999999998874 44678889999
Q ss_pred HHHhccCCcchHHHHHHHHHHhCCCCCh-hhHHHHH------------HHHhHhcCCHHHHHHHHhhCC---CCChhHHH
Q 046956 338 SACSQVGNLDLSNWVDSYLSRSHMDLSR-AHVIAAL------------VDMNAKCGNMDRAAELFETMP---NRDVVSYC 401 (574)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 401 (574)
.++...|++++|...++.+.+..+.... ...+..+ +..+.+.|++++|...|+.+. ..+...+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999886544320 0244444 555899999999999999876 35778899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH-------
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM------- 474 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l------- 474 (574)
.++.+|...|++++|...|+++.+.. +.+..++..++..+...|++++|...|+++... .+.+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 99999999999999999999998853 445679999999999999999999999999863 33344555544
Q ss_pred -----HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 475 -----VDLLGRTGHLKSAYELLNSM-PVEPH-----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 475 -----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
+..+.+.|++++|.+.|+++ ...|+ ...+..+...+.+.|++++|+..++++++..|+++.++..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 88999999999999999988 44454 34677788999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCC
Q 046956 544 YATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|...|++++|...++++.+...
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHHHHHhCc
Confidence 9999999999999999987543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=199.35 Aligned_cols=417 Identities=9% Similarity=-0.008 Sum_probs=318.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHh
Q 046956 71 LVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACS 147 (574)
Q Consensus 71 ~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 147 (574)
.+..+- ..+.+.|++++|...|+++. +.++.+|..+..++.+.|++++|++.|+++.+.+. .+...+..+..++.
T Consensus 27 ~~~~~g-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRG-NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANE 104 (537)
T ss_dssp HHHHHH-HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 344444 78889999999999999985 45788999999999999999999999999988743 36678888889999
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCC------ChhhHHHHHHHHHhcCChHHH
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPER------NVVSWTAMIVGYASVGDLVEA 221 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a 221 (574)
..|++++|...|+ .... .|+.. ...+..+...+....|...++++... ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999996 3332 22221 22234444555667888888887642 222334556667778888888
Q ss_pred HHHHhhcCCCCcc---hHHHHHHHHHc--------cCChHHHHHHHhcCCC--Cc--------hhHHHHHHHHHHhcCCh
Q 046956 222 KTVFDLMPERSNV---SWNALIGGLVK--------IGDLRSARQLFDEMPE--RN--------VVSYTTMIDGYAKVGDM 280 (574)
Q Consensus 222 ~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~g~~ 280 (574)
...+......+.. ....+...+.. .|++++|..+++.+.+ |+ ..++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 8887777665443 33333333322 2478889988884432 32 23577778889999999
Q ss_pred HHHHHHHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHH
Q 046956 281 TSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSR 358 (574)
Q Consensus 281 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 358 (574)
++|...|++..+ |+..+|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999988753 567889999999999999999999999998764 44678899999999999999999999999998
Q ss_pred hCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----CC
Q 046956 359 SHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-----TP 430 (574)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p 430 (574)
..+.... .+..++..+...|++++|...++++. ..+...+..+...+...|++++|...|+++.+... ..
T Consensus 339 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LNPENVY--PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HCTTCSH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 7755443 78899999999999999999999876 34567899999999999999999999999886421 11
Q ss_pred CHHHHHHHHHHHhcc----------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 046956 431 DEVAFTIVLTACSHV----------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH 499 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 499 (574)
....+......+... |++++|...++++.+. .+.+...+..++.+|.+.|++++|.+.|+++ ...|+
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 122345556677777 9999999999999973 4456788999999999999999999999987 44444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-20 Score=178.81 Aligned_cols=301 Identities=15% Similarity=0.086 Sum_probs=159.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcC---CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhC
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEM---PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQN 308 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 308 (574)
.+..+...+...|++++|...++.. .+.+..++..+...+...|++++|+..|+++.+ .+...|..+...+...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 3444555555555666555555522 123344555555555555555555555554432 2344555555555555
Q ss_pred CCchHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHH
Q 046956 309 GQPDEAVKIFSDMCSKNVQP----DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR 384 (574)
Q Consensus 309 ~~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 384 (574)
|++++|...|+++.+. .| +...+..+..... ...+..++..+...|++++
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccCHHH
Confidence 5555555555555543 22 1222222210000 0011122455566666666
Q ss_pred HHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 385 AAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 385 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
|.+.++++. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666554 2344556666666666666666666666666532 223445666666666666666666666666552
Q ss_pred cCCCCcHHHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHH
Q 046956 462 YAIVPSPEHYA------------CMVDLLGRTGHLKSAYELLNSM-PVEPH-A----SAWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 462 ~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
.+.+...+. .++..+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|+..+
T Consensus 218 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 218 --DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 222222222 2244566666666666666655 22232 2 12233445566666666666666
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 524 NRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+++++.+|+++.++..++.+|...|++++|...++++.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-19 Score=172.93 Aligned_cols=318 Identities=11% Similarity=0.017 Sum_probs=234.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHccCChHHHHHHHhc---CCCCchhHHHHHHHHH
Q 046956 201 NVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSNVSWNALIGGLVKIGDLRSARQLFDE---MPERNVVSYTTMIDGY 274 (574)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~ 274 (574)
|+..+..+...+...|++++|+..|+++.+ .+...+..+...+...|++++|...++. ..+.+...+..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 356788889999999999999999999865 3566888999999999999999999994 3245678899999999
Q ss_pred HhcCChHHHHHHHhhCCC--C----CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcch
Q 046956 275 AKVGDMTSARSLFEAAPD--R----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348 (574)
Q Consensus 275 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 348 (574)
...|++++|...|+++.+ | +...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 999999999999998765 3 2334443321100 0112223334445555555
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
|...++.+.+..+... ..+..++..+...|++++|...++++.+ .+...|..+...+...|++++|...+++..+
T Consensus 139 A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVCVWDA--ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555554433222 2566677777777777777777776542 3566777788888888888888888888877
Q ss_pred CCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHHhhcCCHHHHH
Q 046956 426 EGLTPDE-VAFT------------IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP----EHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 426 ~g~~p~~-~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 488 (574)
. .|+. ..+. .+...+.+.|++++|...++++.+. .+.+. ..+..++.++...|++++|.
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4 3433 2332 2356688899999999999999874 22233 33556788999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 046956 489 ELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 489 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (574)
+.++++ ...| +...+..+...+...|++++|...++++++++|+++.++..+..++...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999988 3345 6778888889999999999999999999999999999999888876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-17 Score=169.76 Aligned_cols=454 Identities=12% Similarity=0.130 Sum_probs=334.1
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC------CCChhhHHHHHHHHHhCCCchHHHHHHHHh
Q 046956 54 HQVHSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV------NPNTFLWNTLLKGYSQNSRFIEVFTIFVRL 127 (574)
Q Consensus 54 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 127 (574)
+..-+++++. .|+..|+.++ ..+-+.-+.+.++.. ..++.--...+.+|...|.+.+|++++++.
T Consensus 941 k~~arylv~r---~d~~lW~~vl------~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKi 1011 (1630)
T 1xi4_A 941 KSLSRYLVRR---KDPELWGSVL------LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKI 1011 (1630)
T ss_pred HHHHHHHHHh---cCHHHHHHHh------cCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4455566663 5677777666 122233344554432 345555567788999999999999999998
Q ss_pred HhCCC--CCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhH
Q 046956 128 IREEA--VPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSW 205 (574)
Q Consensus 128 ~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 205 (574)
.-.+. .-+...-+.++.+..+. +..+..++...+.. .....+...+...|.+++|..+|++... ...+.
T Consensus 1012 vl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~ 1082 (1630)
T 1xi4_A 1012 VLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFDV-NTSAV 1082 (1630)
T ss_pred HcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHH
Confidence 84421 12334555566655555 55666666655431 1234577888899999999999999752 22223
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 046956 206 TAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARS 285 (574)
Q Consensus 206 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (574)
+.++. ..|++++|.+++++.. ++.+|..+..++...|++++|...|.. ..|...|..++..+.+.|++++|.+
T Consensus 1083 ~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiK--AdD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1083 QVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHh--cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 33332 7789999999999774 567899999999999999999999976 4778888899999999999999999
Q ss_pred HHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCC
Q 046956 286 LFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDL 363 (574)
Q Consensus 286 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (574)
.+....+ ++....+.++.+|++.+++++..... + .++...+..+...|...|++++|..+|..+.
T Consensus 1156 yL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~------ 1222 (1630)
T 1xi4_A 1156 YLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------ 1222 (1630)
T ss_pred HHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh------
Confidence 9976543 33334445899999999888544332 2 3466777789999999999999999999862
Q ss_pred ChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 364 SRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 364 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
.|..++..|.+.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..+...+..++..|.
T Consensus 1223 ----ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 ----NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 1291 (1630)
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHH
Confidence 79999999999999999999999884 568999999999999999999887654 3345556778899999
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh--cCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcC
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR--TGHLKSAYELLNSM-PVEP------HASAWGALLGACKLYS 514 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~ 514 (574)
+.|.+++|+.+++..... -+-....|+.+..+|.+ -++..++.++|.+- .+.| +...|..+...|.+.|
T Consensus 1292 ~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred HcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999888742 23345667666666654 55777888877654 3222 4667888999999999
Q ss_pred CHHHHHHHHHHHHh------------hCCCCchhHHHHHHHHHhcC---------------CchHHHHHHH
Q 046956 515 DIELGELVANRLFE------------LEPQNAGSYVLLSNIYATAD---------------RWLDVCLVRS 558 (574)
Q Consensus 515 ~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~ 558 (574)
+++.|....-+-.. ..+.++..|+..+..|...+ +.+.+.++++
T Consensus 1370 e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1370 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 99999843322211 16778899998888888777 7777777765
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-19 Score=169.24 Aligned_cols=287 Identities=11% Similarity=0.020 Sum_probs=225.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
+.+...+..++..+...|++++|+++|+++.+ .+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45666777777888888888888888877653 345566677788888888888888888887753 33566777778
Q ss_pred HHHhccC-CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh
Q 046956 338 SACSQVG-NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHG 413 (574)
Q Consensus 338 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 413 (574)
..+...| ++++|...++.+.+..+.... .+..++..+...|++++|...++++.+ .+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGP--AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 8888888 888888888888876544333 688888899999999999999888762 3456777788899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcC-------CCCcHHHHHHHHHHHhhcCCHHH
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA-------IVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998853 34456888888899999999999999998886421 13446788899999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HhcCCch
Q 046956 487 AYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY-ATADRWL 551 (574)
Q Consensus 487 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 551 (574)
|.+.++++ ...| +...+..+...+...|++++|...++++++++|+++.++..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999887 3333 5677888889999999999999999999999999999999999988 4556543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-16 Score=164.93 Aligned_cols=382 Identities=13% Similarity=0.082 Sum_probs=289.6
Q ss_pred chHHHHHHHHhccCCcHHHHHHHHHHHHhCC--CCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHh
Q 046956 137 YTFPLVIKACSHVLSVREGTAIHAAVIRWGV--DEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYAS 214 (574)
Q Consensus 137 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 214 (574)
.-....++++...|.+.++.++++++.-.+- .-+...-+.|+.+..+. +..+..++.++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 3445567788889999999999998884321 12334556666666665 5566666666554322 4557788889
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 046956 215 VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRD 294 (574)
Q Consensus 215 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 294 (574)
.|.+++|..+|++....+ ...+.+ +...+++++|.++.++. .+..+|..+..++.+.|++++|++.|.+. .|
T Consensus 1062 lglyEEAf~IYkKa~~~~-~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVNT-SAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred CCCHHHHHHHHHHcCCHH-HHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 999999999999974221 112222 23788999999999976 44778889999999999999999999775 57
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHH
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD 374 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 374 (574)
...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....+. + .+... .+..++.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~a-d~~~iGd 1203 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNA-HIQQVGD 1203 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHH-HHHHHHH
Confidence 7888889999999999999999999887764 34333445888999998887544442 1 22333 5667999
Q ss_pred HhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046956 375 MNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 454 (574)
.|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999986 48999999999999999999999876 3557899999999999999999887
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhC
Q 046956 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACK--LYSDIELGELVANRLFELE 530 (574)
Q Consensus 455 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 530 (574)
...+ ..++..+..++..|.+.|.+++|+.+++.. +.++. ...|..+...+. +.++..++.+.|..-..+.
T Consensus 1273 gl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 6543 346677889999999999999999999877 55543 345555555554 4456666777777655555
Q ss_pred C-----CCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 531 P-----QNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 531 p-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
| .+...|..+..+|.+.|+|+.|...+
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5 67888999999999999999998543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=171.10 Aligned_cols=240 Identities=14% Similarity=0.125 Sum_probs=101.1
Q ss_pred hcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHH
Q 046956 81 SLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHA 160 (574)
Q Consensus 81 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 160 (574)
.+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57889999999999996654 8999999999999999999999653 577799999999999999999999888
Q ss_pred HHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHH
Q 046956 161 AVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALI 240 (574)
Q Consensus 161 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 240 (574)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|..+...|...|++++|..+|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77764 45578889999999999999999888864 77789999999999999999999999987 4788899
Q ss_pred HHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHH
Q 046956 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSD 320 (574)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 320 (574)
.++.+.|++++|.+.+... .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|..+++.
T Consensus 156 ~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999877 378889999999999999999977776655 3444444688888888999999888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc
Q 046956 321 MCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 321 m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
..... +-....|+.+..++++
T Consensus 233 aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 233 ALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HTTST-TCCHHHHHHHHHHHHT
T ss_pred HhCCc-HHHHHHHHHHHHHHHh
Confidence 87543 3445556655555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-18 Score=169.86 Aligned_cols=365 Identities=12% Similarity=0.009 Sum_probs=254.9
Q ss_pred CcchHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHc----CCChHHHHHHHccCCC-CChhhH
Q 046956 135 DKYTFPLVIKACSH----VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGK----RKEISCARKVFDEMPE-RNVVSW 205 (574)
Q Consensus 135 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~ 205 (574)
+...+..+...+.. .+++++|...|+...+.| +...+..|...|.. .++.++|...|++..+ .+..++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444 555566666665555543 33444555555555 5555555555555433 233444
Q ss_pred HHHHHHHHh----cCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHh----c
Q 046956 206 TAMIVGYAS----VGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK----V 277 (574)
Q Consensus 206 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~ 277 (574)
..|...|.. .+++++|+..|++..+ ..+...+..+...|.. .
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~------------------------------~~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAE------------------------------QGRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH------------------------------TTCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHH------------------------------CCCHHHHHHHHHHHHcCCCCC
Confidence 444444444 4455555555444322 2345566666666766 6
Q ss_pred CChHHHHHHHhhCCC-CCHhHHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCcch
Q 046956 278 GDMTSARSLFEAAPD-RDVVAWSALISGYAQ----NGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ----VGNLDL 348 (574)
Q Consensus 278 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~ 348 (574)
+++++|.+.|++..+ .+..++..+...|.. .+++++|...|++..+.| +...+..+...+.. .++.++
T Consensus 165 ~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 778888888776543 466777778888877 788888888888887765 45566666666664 678888
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHc-----CChHHHHH
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAK----CGNMDRAAELFETMPN-RDVVSYCSMIKGLSIH-----GHGRQAVS 418 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~ 418 (574)
|..+++...+.+. .. .+..+..+|.. .++.++|.++|++..+ .+...+..+...|... +++++|+.
T Consensus 242 A~~~~~~a~~~~~---~~-a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 242 SRVLFSQSAEQGN---SI-AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHHHTTTC---HH-HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHHHCCC---HH-HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 8888888876542 22 56677788877 8899999999988764 5667788888888877 89999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHH
Q 046956 419 LFDRMLSEGLTPDEVAFTIVLTACSHVG---LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR----TGHLKSAYELL 491 (574)
Q Consensus 419 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~ 491 (574)
+|++..+.| +...+..+...|...| ++++|.++|++..+. .++..+..+...|.. .+++++|.+.|
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999865 4456677777776656 889999999999874 467788888888888 89999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 046956 492 NSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELEPQ---NAGSYVLLSNIYAT 546 (574)
Q Consensus 492 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 546 (574)
++.-...+...+..+...|.. .+++++|...|+++.+.+|+ ++.+...|+.++..
T Consensus 391 ~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 391 RKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 988333467788888888887 89999999999999999854 77777777776554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=165.73 Aligned_cols=266 Identities=11% Similarity=0.001 Sum_probs=229.9
Q ss_pred CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHH
Q 046956 293 RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAAL 372 (574)
Q Consensus 293 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 372 (574)
.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|...+..+.+..+.... .+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV--SWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH--HHHHH
Confidence 456677888899999999999999999998764 334556666778889999999999999999987655443 78899
Q ss_pred HHHhHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046956 373 VDMNAKCG-NMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLV 448 (574)
Q Consensus 373 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 448 (574)
+..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998763 456789999999999999999999999999853 33456777899999999999
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV----------EPHASAWGALLGACKLYSDIE 517 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~ 517 (574)
++|...++++.+ ..+.+...+..++..+...|++++|.+.++++ .. ......+..+...+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999997 45556789999999999999999999999876 11 234568888999999999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=172.13 Aligned_cols=277 Identities=10% Similarity=-0.036 Sum_probs=193.3
Q ss_pred cCChHHHHH-HHhhCCC--C-----CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcch
Q 046956 277 VGDMTSARS-LFEAAPD--R-----DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDL 348 (574)
Q Consensus 277 ~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 348 (574)
.|++++|.. .|++... + +...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554332 1 23345555666666666666666666665542 2344555555666666666666
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHH---------------HHHHHHHc
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCS---------------MIKGLSIH 410 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~ 410 (574)
|...++.+.+..+.. ...+..++..|...|++++|.+.++++.+ | +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDN--QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666665554322 22556666666666666666666665442 1 1111110 13333488
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPD---EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
|++++|...++++.+. .|+ ..++..+...+...|++++|...++++... .+.+...+..++.++...|++++|
T Consensus 195 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999985 444 678999999999999999999999999873 445678899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------chhHHHHHHHHHhcCCchHHH
Q 046956 488 YELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN-----------AGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 488 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~ 554 (574)
.+.++++ ...| +...+..+...+...|++++|+..+++++++.|++ +.++..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999987 3344 57788888899999999999999999999998887 789999999999999999999
Q ss_pred HHHHHH
Q 046956 555 LVRSKM 560 (574)
Q Consensus 555 ~~~~~~ 560 (574)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 988643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-17 Score=165.40 Aligned_cols=410 Identities=10% Similarity=0.080 Sum_probs=268.4
Q ss_pred HHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CC
Q 046956 124 FVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RN 201 (574)
Q Consensus 124 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 201 (574)
|++.++.. +-+...|..++.. ...|++++|..+|+.+++.. +.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 44444442 2256677777774 67788889999998888763 45666788888888888899999998888775 66
Q ss_pred hhhHHHHHHH-HHhcCChHHHHH----HHhhcCC------CCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHH
Q 046956 202 VVSWTAMIVG-YASVGDLVEAKT----VFDLMPE------RSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270 (574)
Q Consensus 202 ~~~~~~li~~-~~~~g~~~~a~~----~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 270 (574)
...|..++.. ....|+.++|.+ +|+.... .+...|...+....+... .+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~-------------~~------- 138 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA-------------VG------- 138 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC-------------CS-------
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC-------------cc-------
Confidence 6677766643 234566666554 4444321 122333333333322000 00
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-CC---HhHHHHHHHHH-------------HhCCCchHHHHHHHHH------HHCC--
Q 046956 271 IDGYAKVGDMTSARSLFEAAPD-RD---VVAWSALISGY-------------AQNGQPDEAVKIFSDM------CSKN-- 325 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~li~~~-------------~~~~~~~~A~~~~~~m------~~~~-- 325 (574)
.+...|+++.|..+|++..+ |. ...|....... ...+++..|..++.+. .+..
T Consensus 139 --~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 139 --SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp --STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred --cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 00013444444444444332 11 01121111100 1234456666666552 2211
Q ss_pred -CCCC--------HHHHHHHHHHHhcc----CCc----chHHHHHHHHHHhCCCCChhhHHHHHHHHhHh-------cCC
Q 046956 326 -VQPD--------EFILVSLMSACSQV----GNL----DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK-------CGN 381 (574)
Q Consensus 326 -~~p~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~ 381 (574)
++|+ ...|...+...... ++. +.+..+++.++...+.. ..++..++..+.+ .|+
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~--~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH--PDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhchhhhhccc
Confidence 2443 23444444332221 222 25667888888765433 2378888888775 688
Q ss_pred HH-------HHHHHHhhCCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcH
Q 046956 382 MD-------RAAELFETMPN---R-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE--VAFTIVLTACSHVGLV 448 (574)
Q Consensus 382 ~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~ 448 (574)
++ +|..+|++..+ | +...|..++..+...|++++|..+|+++++ ..|+. ..|..++..+.+.|++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCH
Confidence 87 89999998763 4 567899999999999999999999999998 45653 4788888888899999
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDL-LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
++|..+|+++.+. .+.+...|...+.. +...|+.++|.++|++. ...| +...|..++..+.+.|+.++|..+|++
T Consensus 373 ~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 373 KSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 9999999999863 22233444333322 34689999999999987 3345 577888888999999999999999999
Q ss_pred HHhhCCCCch----hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 526 LFELEPQNAG----SYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 526 ~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
++...|.++. +|...+......|+.+.+..+.+++.+.-
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9998877665 78788888889999999999999887644
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-17 Score=152.81 Aligned_cols=270 Identities=10% Similarity=0.012 Sum_probs=204.0
Q ss_pred HHHHhcCChHHHHHHHhhCCCCC----HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcc
Q 046956 272 DGYAKVGDMTSARSLFEAAPDRD----VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD 347 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 347 (574)
+-....|+++.|+..++.....+ ......+.++|...|+++.|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 33455677777777777655432 234455677777788887777655431 3456667777777777777788
Q ss_pred hHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046956 348 LSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG 427 (574)
Q Consensus 348 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 427 (574)
.|...++.+...+..|+....+..++..+...|++++|.+.+++ ..+...+..++..|.+.|++++|...++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 88888887776654454444778888999999999999999998 567789999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 046956 428 LTPDEVAF---TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASA 502 (574)
Q Consensus 428 ~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 502 (574)
.|+.... ..++..+...|++++|..+|+++.+ ..+.+...++.++.++.+.|++++|.+.++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4664321 2233444566999999999999998 45678889999999999999999999999987 4455 5778
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 503 WGALLGACKLYSDIEL-GELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
+..++..+...|+.++ +.++++++++++|+++.+.. ...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence 8888888888998865 67899999999999987654 3444445555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-16 Score=159.52 Aligned_cols=350 Identities=13% Similarity=0.039 Sum_probs=273.8
Q ss_pred CcchHHHHHHHHHc----CCChHHHHHHHccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHhhcCCCCcchHHHHH
Q 046956 170 DVFVGTSLIDLYGK----RKEISCARKVFDEMPE-RNVVSWTAMIVGYAS----VGDLVEAKTVFDLMPERSNVSWNALI 240 (574)
Q Consensus 170 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~l~ 240 (574)
+...+..|...|.. .+++++|...|++..+ .+..++..|...|.. .++.++|+++|++..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------- 107 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL---------- 107 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------
Confidence 45555555555555 5666666666665443 344455555555555 5555555555554321
Q ss_pred HHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCHhHHHHHHHHHHh----CCCc
Q 046956 241 GGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAK----VGDMTSARSLFEAAPD-RDVVAWSALISGYAQ----NGQP 311 (574)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~ 311 (574)
..+...+..|...|.. .+++++|++.|++..+ .+..++..+...|.. .+++
T Consensus 108 --------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 108 --------------------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred --------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 2355666777778877 7899999999987654 467788889888887 7899
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHh----cCCHH
Q 046956 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACSQ----VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK----CGNMD 383 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 383 (574)
++|+..|++..+.| +...+..+...|.. .++.++|...+....+.+. .. .+..+..+|.. .++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~-a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD---EL-GQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HH-HHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC---HH-HHHHHHHHHHcCCCCCCCHH
Confidence 99999999998875 56777788888877 8899999999999988653 23 67788888886 89999
Q ss_pred HHHHHHhhCCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHH
Q 046956 384 RAAELFETMPN-RDVVSYCSMIKGLSI----HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV-----GLVEDGWR 453 (574)
Q Consensus 384 ~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~a~~ 453 (574)
+|.++|++..+ .+...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|..
T Consensus 241 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 241 QSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 99999998764 567788888888888 899999999999998764 455677777777776 89999999
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 046956 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTG---HLKSAYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRL 526 (574)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 526 (574)
.|++..+. + +...+..+...|...| ++++|++.|++.-...+...+..+...|.. .+++++|+..++++
T Consensus 318 ~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 318 WYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999874 2 4567788888888766 889999999988333577888888888888 89999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 046956 527 FELEPQNAGSYVLLSNIYAT----ADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 527 ~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 565 (574)
.+.+ ++.++..|+.+|.. .+++++|...|++..+.+.
T Consensus 394 ~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8864 68899999999998 8999999999999988763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=165.24 Aligned_cols=366 Identities=11% Similarity=0.038 Sum_probs=217.0
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHccCCC------------CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHH
Q 046956 170 DVFVGTSLIDLYGKRKEISCARKVFDEMPE------------RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWN 237 (574)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 237 (574)
....|+.|...+...|++++|++.|++..+ ....+|+.+...|...|++++|+..+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~------- 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH------- 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 345678888888888888888887765431 1235677777777777777777776665421
Q ss_pred HHHHHHHccCChHHHHHHHhcCC----CCchhHHHHHHHHHHhc--CChHHHHHHHhhCCC---CCHhHHHHHHHH---H
Q 046956 238 ALIGGLVKIGDLRSARQLFDEMP----ERNVVSYTTMIDGYAKV--GDMTSARSLFEAAPD---RDVVAWSALISG---Y 305 (574)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~li~~---~ 305 (574)
+..... .....++..+..++... +++++|+..|++..+ .+...+..+..+ +
T Consensus 123 -----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 123 -----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp -----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 111110 11234454444444443 356777777766542 234444444433 3
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC
Q 046956 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS----QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN 381 (574)
Q Consensus 306 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 381 (574)
...++.++|++.+++..+.. +.+...+..+...+. ..++.++|...++......+.... ++..++..|...|+
T Consensus 186 ~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~--~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD--VLRSAAKFYRRKDE 262 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH--HHHHHHHHHHHcCc
Confidence 34566677777777766543 223444444443333 345567777777777665543332 56777777777888
Q ss_pred HHHHHHHHhhCCC--C-ChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046956 382 MDRAAELFETMPN--R-DVVSYCSMIKGLSI-------------------HGHGRQAVSLFDRMLSEGLTPD-EVAFTIV 438 (574)
Q Consensus 382 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 438 (574)
+++|.+.+++..+ | +..++..+...|.. .+.+++|...+++..+. .|+ ..++..+
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 340 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhH
Confidence 8888777777652 3 34455555554432 23467788888888874 444 4478888
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcH--HHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSP--EHYACMVD-LLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYS 514 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~ 514 (574)
...+...|++++|...|+++.+. ...+.. ..+..+.. .+...|++++|++.|++. .+.|+......
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~--------- 410 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK--------- 410 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------
Confidence 99999999999999999999874 332221 22333333 245789999999999887 56666543322
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCcccC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPGCSSL 574 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 574 (574)
....+.+++++.++.+|+++.++..|+.+|...|++++|.+.|++..+.+.......+|+
T Consensus 411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234566778888999999999999999999999999999999999999887666666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-16 Score=161.94 Aligned_cols=407 Identities=11% Similarity=0.096 Sum_probs=287.3
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHH
Q 046956 98 NPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSL 177 (574)
Q Consensus 98 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 177 (574)
+.+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|++++... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 347788999998 488999999999999999873 3366788899999999999999999999998864 577777777
Q ss_pred HHH-HHcCCChHHHHH----HHccCC-----C-CChhhHHHHHHHHHh---------cCChHHHHHHHhhcCCC-Cc---
Q 046956 178 IDL-YGKRKEISCARK----VFDEMP-----E-RNVVSWTAMIVGYAS---------VGDLVEAKTVFDLMPER-SN--- 233 (574)
Q Consensus 178 i~~-~~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~-~~--- 233 (574)
+.. ....|+.+.|.+ +|++.. + .+...|...+..... .|++++|..+|++..+. ..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 753 345677777665 666542 1 356678887776654 68899999999988762 11
Q ss_pred chHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhh-------CC------CCC------
Q 046956 234 VSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA-------AP------DRD------ 294 (574)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~------ 294 (574)
..|..........|. ..+..++.. +.++++.|..++.. +. .|+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 122211111100110 111111111 22344555544432 11 111
Q ss_pred --HhHHHHHHHHHHhC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCCcc-------hHH
Q 046956 295 --VVAWSALISGYAQN----GQP----DEAVKIFSDMCSKNVQPDEFILVSLMSACSQ-------VGNLD-------LSN 350 (574)
Q Consensus 295 --~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~ 350 (574)
...|...+...... ++. +++..+|++.... .+-+...|..+...+.. .|+.+ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 24565555443332 232 3778889988875 24467777777777764 68887 889
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC-h-hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD-V-VSYCSMIKGLSIHGHGRQAVSLFDRMLSE 426 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 426 (574)
.+++...+.- .|....++..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|+.++|..+|++..+.
T Consensus 307 ~~~~~Al~~~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 307 NIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHTTTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHh-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999888622 233333889999999999999999999998763 43 3 58999999999999999999999999985
Q ss_pred CCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC-
Q 046956 427 GLTPD-EVAFTIVLTA-CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P---VEPH- 499 (574)
Q Consensus 427 g~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~- 499 (574)
.|+ ...|...+.. +...|++++|..+|++..+. .+.+...|..++..+.+.|+.++|..+|+++ . ..|+
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 333 3344333322 34689999999999999874 3456789999999999999999999999987 2 2332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 500 -ASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 500 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
...|...+......|+.+.+..+.+++.+..|+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 457888888888999999999999999999884
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-17 Score=156.07 Aligned_cols=278 Identities=12% Similarity=0.048 Sum_probs=137.4
Q ss_pred hCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHH
Q 046956 113 QNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARK 192 (574)
Q Consensus 113 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 192 (574)
+.|+.++|.+.++++ ++..+|..+..++.+.|++++|++.|.+ .+|...|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567899999999988 2345899999999999999999999965 3577799999999999999999999
Q ss_pred HHccCCC--CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHH
Q 046956 193 VFDEMPE--RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTM 270 (574)
Q Consensus 193 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 270 (574)
.++...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 8877765 556788999999999999999988875 367779999999999999999999999977 489999
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHH
Q 046956 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 350 (574)
+.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+ ..++.-...++..|.+.|.++++.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999984 8999999999999999999996655542 233344557888999999999999
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHh--cCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHcCChHHHHHH
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAK--CGNMDRAAELFETMPN--------RDVVSYCSMIKGLSIHGHGRQAVSL 419 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~ 419 (574)
.+++...... +....++..+..+|++ .+++.+..+.|..-.. .+...|..+.-.|...++++.|...
T Consensus 228 ~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 228 TMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 9999988655 2223378888877776 4567777777765543 3567899999999999999998863
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-18 Score=163.73 Aligned_cols=255 Identities=13% Similarity=-0.014 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
.+..+...+.+.|++++|++.|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+..+
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~---------- 135 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKA---------- 135 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH----------
Confidence 355555555555555555555554432 234455555555555555555555555554432 122334
Q ss_pred cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-----------ChhHHHHHHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-----------DVVSYCSMIKGLSI 409 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----------~~~~~~~li~~~~~ 409 (574)
+..++..|...|++++|...|+++.+ | ....+..+...+..
T Consensus 136 --------------------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 136 --------------------------LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp --------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C
T ss_pred --------------------------HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh
Confidence 44455555555555555555554432 1 12234456778888
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 046956 410 HGHGRQAVSLFDRMLSEGLT-PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAY 488 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 488 (574)
.|++++|...++++.+.... ++..++..+...+...|++++|...++++.+ ..+.+..++..++.+|...|++++|+
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999885311 1467888999999999999999999999987 34556789999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCchHHH
Q 046956 489 ELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ------------NAGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 489 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~ 554 (574)
+.|+++ ...| +...+..+...|...|++++|+..+++++++.|+ +..++..|+.++...|+.+.+.
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 999987 4445 4778888889999999999999999999999876 4678999999999999999888
Q ss_pred HHHHH
Q 046956 555 LVRSK 559 (574)
Q Consensus 555 ~~~~~ 559 (574)
...++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 87754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-18 Score=159.51 Aligned_cols=273 Identities=11% Similarity=0.015 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 265 VSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACS 341 (574)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 341 (574)
..+..+...+...|++++|..+|+++.+ .+..+|..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3445555666666666666666655432 244555556666666666666666666655542 223445555555555
Q ss_pred ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHH-HH-HHHHcCChHHHHHH
Q 046956 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSM-IK-GLSIHGHGRQAVSL 419 (574)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~a~~~ 419 (574)
..|++++|...++.+.+..+..... +..+.... ++......+ .. .+...|++++|...
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQL--GSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC----------------------------------------CCTTSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHH--HHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 5555555555555555443322211 11110000 000011111 22 36677889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 046956 420 FDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP 498 (574)
Q Consensus 420 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 498 (574)
++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...|
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99998853 335678889999999999999999999999873 4456788999999999999999999999887 3334
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 499 -HASAWGALLGACKLYSDIELGELVANRLFELEPQ------------NAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 499 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+...+..+...+...|++++|...++++++..|+ ++..+..++.++...|++++|..++++..
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5778888889999999999999999999999999 78899999999999999999999987544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-17 Score=160.27 Aligned_cols=243 Identities=13% Similarity=0.057 Sum_probs=146.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046956 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMS 338 (574)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 338 (574)
.+..++..+...|.+.|++++|++.|+++.+ .+..++..+...+...|++++|...++++.+.... +...+..+
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~-- 172 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPA-- 172 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHH--
Confidence 3445556666666666666666666655432 34556666666666666666666666666654211 11111000
Q ss_pred HHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--CC---ChhHHHHHHHHHHHcCCh
Q 046956 339 ACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP--NR---DVVSYCSMIKGLSIHGHG 413 (574)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~~~~ 413 (574)
+.... ...+. . .+..+...+ ..|++++|...|+++. .| +..++..+...|...|++
T Consensus 173 -----~~~~~-----------~~~~~-~-~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~ 233 (368)
T 1fch_A 173 -----EEGAG-----------GAGLG-P-SKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233 (368)
T ss_dssp -------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH
T ss_pred -----HHHhh-----------hhccc-H-HHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH
Confidence 00000 00000 0 111233333 6677777777777665 23 356777777777777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (574)
++|+..++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|.+.+++
T Consensus 234 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 234 DKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888887777642 233557777777777788888888888877763 334567777777888888888888877776
Q ss_pred C-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 494 M-PVEP------------HASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 494 ~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+ ...| ...+|..+..++...|++++|..++++.++.
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 6 1111 1567777778888888888888777765543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-17 Score=148.98 Aligned_cols=248 Identities=9% Similarity=0.021 Sum_probs=200.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc
Q 046956 302 ISGYAQNGQPDEAVKIFSDMCSKNVQPDE--FILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC 379 (574)
Q Consensus 302 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (574)
++-....|++.+|+..++..... .|+. .....+.++|...|+.+.|...++. . .++....+..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCC
Confidence 45567789999999999887543 4443 3556678899999999998876543 1 333334788899999999
Q ss_pred CCHHHHHHHHhhCC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046956 380 GNMDRAAELFETMP----NR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454 (574)
Q Consensus 380 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 454 (574)
|+.++|.+.++++. .| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 556777888999999999999999987 45667899999999999999999999
Q ss_pred HHHhHhhcCCCCcHHH---HHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 455 FEAMQNVYAIVPSPEH---YACMVDLLGRTGHLKSAYELLNSM-P-VEPHASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 455 ~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
++++.+. .|+... ...++..+...|++++|..+|+++ . ...+...++.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999975 344321 122344555669999999999998 2 3346778889999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCchH-HHHHHHHHHhCCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLD-VCLVRSKMKERGL 565 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 565 (574)
+|+++.++..++.++...|++++ +.++++++.+.++
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999986 5789998886554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-17 Score=156.67 Aligned_cols=228 Identities=12% Similarity=0.036 Sum_probs=173.1
Q ss_pred HHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHH
Q 046956 333 LVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSI 409 (574)
Q Consensus 333 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 409 (574)
+..+...+...|++++|...++.+.+..+.. ...+..++..|.+.|++++|...|+++. ..+..+|..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD--AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 3333344444444444444444444433222 2267777777888888888888887765 2457889999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 410 HGHGRQAVSLFDRMLSEGLTPDEV-----------AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 410 ~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
.|++++|...++++.+. .|+.. .+..+...+...|++++|..+++++.+.....++..++..++..|
T Consensus 146 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 99999999999999883 44432 233457789999999999999999998522222688999999999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 479 GRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
...|++++|++.++++ ...| +..+|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|...
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987 3344 5788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 046956 557 RSKMKERG 564 (574)
Q Consensus 557 ~~~~~~~~ 564 (574)
++++.+..
T Consensus 304 ~~~al~~~ 311 (365)
T 4eqf_A 304 FLTALSLQ 311 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99988644
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-17 Score=153.97 Aligned_cols=272 Identities=11% Similarity=0.010 Sum_probs=175.7
Q ss_pred CcchHHHHHHHHHccCChHHHHHHHhcC---CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHH
Q 046956 232 SNVSWNALIGGLVKIGDLRSARQLFDEM---PERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGY 305 (574)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 305 (574)
+...+..+...+...|++++|..+++.. .+.+...+..+...+...|++++|...|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 4456788889999999999999999843 245678899999999999999999999987653 4678899999999
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHH--HhHhcCCHH
Q 046956 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVD--MNAKCGNMD 383 (574)
Q Consensus 306 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~ 383 (574)
...|++++|...++++.+.... +...+..+...+ +... ....+.. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~-~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDID-DLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHH-HHHHHHHhHHHHHcccHH
Confidence 9999999999999999876321 222222220000 0000 1111211 244555556
Q ss_pred HHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 384 RAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 384 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+|.+.++++. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665555544 1245566666666666667777777766666532 22345666666666677777777777776665
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-------------ASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
. .+.+...+..++.++...|++++|.+.++++ ...|+ ...+..+..++...|++++|..+++++
T Consensus 235 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 I--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred c--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 2334566666677777777777777776665 22222 445666667777777777777777665
Q ss_pred HhhC
Q 046956 527 FELE 530 (574)
Q Consensus 527 ~~~~ 530 (574)
++..
T Consensus 313 l~~~ 316 (327)
T 3cv0_A 313 VEPF 316 (327)
T ss_dssp SHHH
T ss_pred HHhc
Confidence 5543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-16 Score=158.61 Aligned_cols=378 Identities=9% Similarity=-0.037 Sum_probs=213.5
Q ss_pred CCcchHHHHHHHHhccCCcHHHHHHHHHHHHh-----C--CCC-CcchHHHHHHHHHcCCChHHHHHHHccCCC------
Q 046956 134 PDKYTFPLVIKACSHVLSVREGTAIHAAVIRW-----G--VDE-DVFVGTSLIDLYGKRKEISCARKVFDEMPE------ 199 (574)
Q Consensus 134 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 199 (574)
.....|+.+...+...|++++|++.|++.++. + ..| ...+|+.+..+|...|++++|...+++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999988653 1 122 345788899999999999999998876542
Q ss_pred -----CChhhHHHHHHHHHhc--CChHHHHHHHhhcCC--C-CcchHHHHHHH---HHccCChHHHHHHHh---cCCCCc
Q 046956 200 -----RNVVSWTAMIVGYASV--GDLVEAKTVFDLMPE--R-SNVSWNALIGG---LVKIGDLRSARQLFD---EMPERN 263 (574)
Q Consensus 200 -----~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~---~~~~~~ 263 (574)
....++..+..++... +++++|++.|++..+ | ++..+..+..+ +...++.++|.+.++ .+.+.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1234555555555543 468899999988754 3 33334333333 334455566665555 232344
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHhhCC---CCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 046956 264 VVSYTTMIDGYAK----VGDMTSARSLFEAAP---DRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSL 336 (574)
Q Consensus 264 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 336 (574)
..++..+...+.. .|++++|.+.+++.. ..+..++..+...|...|++++|+..+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 4555555444433 345666776666543 2345666677777777777777777777766542 2234444444
Q ss_pred HHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCCh
Q 046956 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHG 413 (574)
Q Consensus 337 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 413 (574)
...|...+.. .... ............+..+.|...+++.. ..+...+..+...|...|++
T Consensus 288 g~~y~~~~~~---------~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 288 GCCYRAKVFQ---------VMNL--------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHH---------HHHC--------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHH---------hhhH--------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 4433211100 0000 00001111112234567777777655 24556888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 046956 414 RQAVSLFDRMLSEGLTPDEV--AFTIVLT-ACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
++|+..|++.++....+... .+..+.. .....|++++|+..|++..+ +.|+....... ...+.++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHH
Confidence 99999999999854333221 2333333 24578999999999999885 34443222222 2233334
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 046956 491 LNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541 (574)
Q Consensus 491 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (574)
+++. ...| +..+|..+...+...|++++|++.|+++++++|.+|.+...+|
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4333 2233 5678889999999999999999999999999999888877665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-16 Score=137.10 Aligned_cols=190 Identities=13% Similarity=0.046 Sum_probs=153.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 443 (574)
.+..++..+.+.|++++|...|++..+ .+...|..+...+...|++++|+..+++.++. .|+ ...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 677888888999999999999988763 45678888999999999999999999999984 454 558888888999
Q ss_pred cc-----------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 046956 444 HV-----------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACK 511 (574)
Q Consensus 444 ~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 511 (574)
.. |++++|...++++.+. .+.+...+..+..++...|++++|++.|+++ ....+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 99 9999999999999973 3445788999999999999999999999987 22267888899999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
..|++++|+..++++++.+|+++.++..++.++...|++++|...+++..
T Consensus 163 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-15 Score=138.16 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 046956 296 VAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM 375 (574)
Q Consensus 296 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (574)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+......
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------- 72 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR----------- 72 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-----------
Confidence 455566666666666666666666666554 4445555555555555555555555554443221110
Q ss_pred hHhcCCHHHHHHHHhhCCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046956 376 NAKCGNMDRAAELFETMPNRD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 451 (574)
++ ...|..+...+...|++++|...++++.+ ..|+. ..+...|++++|
T Consensus 73 -------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 73 -------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHH
Confidence 01 34566666667777777777777777766 34442 234455667777
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
...++++.. ..+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777765 33334566667777777777777777777766 2223 4566667777777777788888888877777
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+|+++..+..++.+|...|++++|...+++..+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 77777777777877888888888877777766543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=138.54 Aligned_cols=234 Identities=10% Similarity=0.056 Sum_probs=179.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCC----HHHHH
Q 046956 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPD--RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNV--QPD----EFILV 334 (574)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~ 334 (574)
....+..+...+...|++++|+..|++..+ .+..+|..+..++...|++++|+..+++..+... .++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--- 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK--- 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH---
Confidence 356788899999999999999999976532 6778999999999999999999999999876421 111 23
Q ss_pred HHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCC
Q 046956 335 SLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RDVVSYCSMIKGLSIHGH 412 (574)
Q Consensus 335 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~ 412 (574)
++..++..+...|++++|.+.|+++.+ ++ ...+...|+
T Consensus 81 ---------------------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~ 120 (258)
T 3uq3_A 81 ---------------------------------SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRN 120 (258)
T ss_dssp ---------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhH
Confidence 444555555555666666555555442 33 234556677
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 046956 413 GRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 413 ~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (574)
+++|...++++... .|+. ..+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.+
T Consensus 121 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 121 AEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888888873 4544 47788888888999999999999998873 3456788888999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHH
Q 046956 492 NSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE------PQNAGSYVLLSNI 543 (574)
Q Consensus 492 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 543 (574)
+++ ...| +...+..+...+...|++++|...+++++++. |++..++..+..+
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 887 3334 46778888899999999999999999999998 8888777777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-15 Score=136.58 Aligned_cols=246 Identities=11% Similarity=-0.045 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD--EFILVSLMSAC 340 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~ 340 (574)
.+......+...|++++|+..|++..+ .+...+..+..++...|++++|+..+++..+.+..++ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455666666666666666665432 2344566666666666666666666666655321111 22344455555
Q ss_pred hccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 046956 341 SQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
...|++++|...++.+.+..+.... ++..++..|...|++++|.+.|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~------------------------------ 132 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLD--MYGQIGSYFYNKGNFPLAIQYME------------------------------ 132 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTH--HHHHHHHHHHHTTCHHHHHHHHG------------------------------
T ss_pred HHcccHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHccCHHHHHHHHH------------------------------
Confidence 5555555555555555544333221 34444444444455554444444
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhC--
Q 046956 421 DRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH---LKSAYELLNSM-- 494 (574)
Q Consensus 421 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-- 494 (574)
+..+. .|+ ...+..+...+...+++++|...|+++.+. .+.+...+..+..++...|+ +++|...++++
T Consensus 133 -~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 133 -KQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp -GGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred -HHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 44432 222 223333331222223555555555555442 22223444444444444444 44444444433
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 495 --PVEPH------ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 495 --~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
...|+ ...+..+...+...|++++|+..++++++++|+++.+...+..+....+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2456667788889999999999999999999999999888877765544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-15 Score=135.94 Aligned_cols=241 Identities=10% Similarity=-0.052 Sum_probs=179.3
Q ss_pred hCCCchHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHH
Q 046956 307 QNGQPDEAVKIFSDMCSKNVQ---PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMD 383 (574)
Q Consensus 307 ~~~~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 383 (574)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+..+... ..+..++..|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHccCHH
Confidence 346677777777777765321 1345666677777777777777777777777654322 26778888888888888
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 384 RAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 384 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+|.+.|+++.+ .+...|..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888887762 35678888999999999999999999999884 56655444555556777999999999988887
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-----ASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
. .+++...+. ++..+...++.++|.+.++++ ...|+ ...+..+...+...|++++|+..++++++.+|++.
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 3 344444444 777788888899999999887 33332 46777888999999999999999999999999876
Q ss_pred hhHHHHHHHHHhcCCchHHHHHH
Q 046956 535 GSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
..+ +.++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 554 55778889999988776
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.6e-17 Score=163.72 Aligned_cols=132 Identities=11% Similarity=0.169 Sum_probs=115.9
Q ss_pred CCCchhHHHHHHHHHHhcCCChHHHHHHhhcc-------CCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcc
Q 046956 65 LEQDHSLVAHFISLCHSLATPLSYSTAVFNRI-------VNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKY 137 (574)
Q Consensus 65 ~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 137 (574)
...-..+||++| ..|+++|++++|.++|++| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 123 ~~~~~~TynaLI-dglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFF-KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344566899999 9999999999999999765 37999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccC
Q 046956 138 TFPLVIKACSHVLSV-REGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEM 197 (574)
Q Consensus 138 ~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (574)
||+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+.+-++.+.++..++
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999999985 789999999999999999999999998777655444444443333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-13 Score=126.42 Aligned_cols=224 Identities=10% Similarity=-0.026 Sum_probs=131.1
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCcchHHHHHHHHHHhCCCCChhhHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ----VGNLDLSNWVDSYLSRSHMDLSRAHVI 369 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 369 (574)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 45566666666777777777777777666522 33344444444444 555555555555544432
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 046956 370 AALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI----HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH- 444 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~- 444 (574)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 34445555555555 566666666666665543 44555555555655
Q ss_pred ---cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 046956 445 ---VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR----TGHLKSAYELLNSMPVEPHASAWGALLGACKL----Y 513 (574)
Q Consensus 445 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 513 (574)
.+++++|...|++..+. + +...+..+...|.. .+++++|.+.+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 66666666666666653 2 34455555556655 66666666666655212244555556666666 6
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYAT----ADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 564 (574)
+++++|+..++++++.+| +..+..|+.+|.. .|++++|.+.+++..+.+
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 677777777777666644 5566667777766 677777777776666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-14 Score=142.45 Aligned_cols=343 Identities=12% Similarity=0.008 Sum_probs=143.9
Q ss_pred HHHHHHcCCChHHHHHHHccCCC-CChhhHHHHHHHHHhcCCh---HHHHHHHhhcCCCCcchHHHHHHHHHccC-----
Q 046956 177 LIDLYGKRKEISCARKVFDEMPE-RNVVSWTAMIVGYASVGDL---VEAKTVFDLMPERSNVSWNALIGGLVKIG----- 247 (574)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~----- 247 (574)
+...+.+.|++++|..+|++..+ .+..++..|...|...|+. ++|+++|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 45556667777777777776654 3444555555556666666 67777777666555555555555444433
Q ss_pred ChHHHHHHHhcCC-CCchhHHHHHHHHHHhcCChHHH---HHHHhhCCC-CCHhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 248 DLRSARQLFDEMP-ERNVVSYTTMIDGYAKVGDMTSA---RSLFEAAPD-RDVVAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 248 ~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
+.++|...++... ..+...+..|...|...+..+++ .+.+..... .+...+..+...|...+.++++......+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 4556666665221 22333555555555554433222 222222111 234455555555555554443333322221
Q ss_pred HCCCCCCHHHHHHHHHHHhccC---CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc----CCHHHHHHHHhhCCCC
Q 046956 323 SKNVQPDEFILVSLMSACSQVG---NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC----GNMDRAAELFETMPNR 395 (574)
Q Consensus 323 ~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 395 (574)
+.-...+...+..+...|...| +.++|...+....+.+..... .+..+..+|... +++++|.++|++....
T Consensus 169 ~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~--~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g 246 (452)
T 3e4b_A 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ--RVDSVARVLGDATLGTPDEKTAQALLEKIAPG 246 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH--HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCC
Confidence 1111111124444444555555 555555555555554433222 223444444333 4555555555554422
Q ss_pred ChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHhHhhcCCCCc
Q 046956 396 DVVSYCSMIKG-L--SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG-----LVEDGWRFFEAMQNVYAIVPS 467 (574)
Q Consensus 396 ~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~ 467 (574)
+...+..+... + ...+++++|+.+|++..+.| +...+..|...|. .| ++++|..+|++.. +-+
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~ 317 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GRE 317 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTC
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCC
Confidence 33444444444 2 23455555555555555443 3334444444443 23 5555555555443 123
Q ss_pred HHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 046956 468 PEHYACMVDLLGR----TGHLKSAYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELE 530 (574)
Q Consensus 468 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 530 (574)
+..+..|...|.. ..++++|.+.|++.-...+......+...|.. ..|.++|...++++.+..
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444433 22555555555554111222233333333332 234555555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.2e-14 Score=124.00 Aligned_cols=195 Identities=10% Similarity=-0.006 Sum_probs=142.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|.+.|+++. ..+...|..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 56666777777777777777777655 2345677777777788888888888888877742 3345577777777888
Q ss_pred c-CcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 046956 445 V-GLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGE 520 (574)
Q Consensus 445 ~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 520 (574)
. |++++|...++++.+. +..|+ ...+..++.++...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 8 8888888888887762 23333 566777778888888888888888776 3233 4666777777888888888888
Q ss_pred HHHHHHHhhCC-CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 521 LVANRLFELEP-QNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 521 ~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
..++++++..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88888888888 778888888888888888888888888776544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-14 Score=127.89 Aligned_cols=195 Identities=9% Similarity=-0.043 Sum_probs=119.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|.+.|+++. ..+...+..+...|...|++++|...++++.+.. +.+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 44555555555556555555555543 1244556666666666666666666666666532 2234466666666666
Q ss_pred cCcHHHHHHHHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
.|++++|..+++++... +..| +...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666541 2333 3455666666666666777666666665 2222 35556666666666777777777
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777677666667777777777777777777776666544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-14 Score=135.08 Aligned_cols=246 Identities=9% Similarity=0.032 Sum_probs=174.2
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-cchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN-LDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
..+|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|...++.+++.++.... ++..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~--a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ--VWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH--HHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH--HHHHHH
Confidence 3455556666666666666666666666542 2245556666666666664 66666666666665544332 566777
Q ss_pred HHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCcH
Q 046956 374 DMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSH-VGLV 448 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~-~g~~ 448 (574)
.++...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++. .| +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 777777777777777777652 45677888888888888888899888888884 45 45588888888877 5554
Q ss_pred HHH-----HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 046956 449 EDG-----WRFFEAMQNVYAIVPSPEHYACMVDLLGRTG--HLKSAYELLNSMPVEPH-ASAWGALLGACKLYS------ 514 (574)
Q Consensus 449 ~~a-----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~------ 514 (574)
++| +..+++++. -.+-+...|..+..++...| ++++|++.++++...|+ ...+..+...|...|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 666 477888876 33445678888888888888 68888888887754554 556777777777763
Q ss_pred --C-HHHHHHHHHHH-HhhCCCCchhHHHHHHHHHhc
Q 046956 515 --D-IELGELVANRL-FELEPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 515 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 547 (574)
+ +++|+.+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999999999888776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-14 Score=120.90 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=142.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 474 (574)
+...|..+...|...|++++|+..|++.++. .|+ ..++..+..++.+.|++++|...+..+.. ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 5667888899999999999999999998884 454 45888888999999999999999999887 344456778888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchH
Q 046956 475 VDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (574)
...+...++++.|.+.++++ ...| +...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88899999999999998887 3344 567788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 046956 553 VCLVRSKMKERGL 565 (574)
Q Consensus 553 a~~~~~~~~~~~~ 565 (574)
|.+.+++..+.+.
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999987653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-14 Score=141.50 Aligned_cols=343 Identities=12% Similarity=0.035 Sum_probs=235.7
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCC-CcchHHHHHHHHHccCCh---HHHHHHHhcCCCCchhHHHHHHHHHHhcC----
Q 046956 207 AMIVGYASVGDLVEAKTVFDLMPER-SNVSWNALIGGLVKIGDL---RSARQLFDEMPERNVVSYTTMIDGYAKVG---- 278 (574)
Q Consensus 207 ~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g---- 278 (574)
.+...+.+.|++++|+++|++..++ +...+..+...+...|+. ++|...|+...+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 3567778899999999999988654 555666677777778887 89999998665557777888888666655
Q ss_pred -ChHHHHHHHhhCCCC-CHhHHHHHHHHHHhCCCch---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHH
Q 046956 279 -DMTSARSLFEAAPDR-DVVAWSALISGYAQNGQPD---EAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVD 353 (574)
Q Consensus 279 -~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 353 (574)
++++|++.|++..++ +..++..|...|...+..+ ++.+.+....+.|. ......+...|...+.++.+....
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHH
Confidence 788999999876653 4567888888888776544 45555555555443 345556667777777666555544
Q ss_pred HHHHHhCCCCChhhHHHHHHHHhHhcC---CHHHHHHHHhhCCC---CChhHHHHHHHHHHHc----CChHHHHHHHHHH
Q 046956 354 SYLSRSHMDLSRAHVIAALVDMNAKCG---NMDRAAELFETMPN---RDVVSYCSMIKGLSIH----GHGRQAVSLFDRM 423 (574)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m 423 (574)
..+.+.....+.. .+..+..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+.+|++.
T Consensus 165 ~~~~~~a~~~~~~-a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 165 ERICKAALNTTDI-CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHTTTCTT-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHH-HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 4443332333333 7888999999999 99999999988763 3444556777777654 6899999999998
Q ss_pred HHCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC-----CHHHHHHHHHhCC
Q 046956 424 LSEGLTPDEVAFTIVLTA-C--SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG-----HLKSAYELLNSMP 495 (574)
Q Consensus 424 ~~~g~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~ 495 (574)
. .| +...+..+... + ...+++++|..+|++..+. | +...+..+...|. .| ++++|.+.|++.-
T Consensus 244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 7 33 44556666655 3 5689999999999999874 4 6677788888887 55 9999999999998
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 046956 496 VEPHASAWGALLGACKL----YSDIELGELVANRLFELEPQNAGSYVLLSNIYAT----ADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 496 ~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 565 (574)
..+......+...|.. ..++++|...|+++.+ +.++.+...|+.+|.. ..+.++|..++++..+.|.
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 6677778788777765 3499999999999877 4567889999999875 5589999999999988875
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-13 Score=123.46 Aligned_cols=171 Identities=15% Similarity=0.040 Sum_probs=127.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~ 443 (574)
.+..++..|...|++++|.+.++++. ..+...+..+...|...|++++|..+++++.+.+..|+. ..+..+...+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 45555555666666666666665544 234566777777788888888888888887763344543 47777888888
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
..|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|.+
T Consensus 153 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 889999999999888873 3445778888888999999999999998887 3344 46667777788899999999999
Q ss_pred HHHHHHhhCCCCchhHHHH
Q 046956 522 VANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l 540 (574)
.++++++..|+++.....+
T Consensus 231 ~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 231 YGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHH
Confidence 9999999999988765543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=129.96 Aligned_cols=193 Identities=13% Similarity=0.109 Sum_probs=96.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 344444555555555555555554432 234455555555555566666666655555532 2233455555555555
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..
T Consensus 104 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666555542 2334455555555556666666666655554 2222 344455555555566666666666
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666666666666666666666666666666655543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=129.92 Aligned_cols=178 Identities=11% Similarity=0.134 Sum_probs=136.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|.+.++++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 45555556666666666666665544 2355677778888888888999999988888753 3456678888888999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999998873 4456778888999999999999999999887 3333 567788888999999999999999
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
++++++.+|+++.++..++.+....|
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999888876654443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-14 Score=136.91 Aligned_cols=295 Identities=14% Similarity=0.077 Sum_probs=180.6
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C----HhHHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-C
Q 046956 262 RNVVSYTTMIDGYAKVGDMTSARSLFEAAPD--R-D----VVAWSALISGYAQNGQPDEAVKIFSDMCSK----NVQP-D 329 (574)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~ 329 (574)
.....+......+...|++++|...|++..+ + + ..+|..+...+...|++++|...+++..+. +..| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445666777788888888888888876543 2 2 346777788888888888888888876442 2122 2
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHhCC----CCChhhHHHHHHHHhHhcCC--------------------HHHH
Q 046956 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHM----DLSRAHVIAALVDMNAKCGN--------------------MDRA 385 (574)
Q Consensus 330 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------------------~~~A 385 (574)
..++..+...+...|++++|...+..+.+... ......++..++..|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566666677777888888777776654321 11222356667777777777 7777
Q ss_pred HHHHhhCCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCcHHHH
Q 046956 386 AELFETMPN-----R----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEG-LTPD----EVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 386 ~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~a 451 (574)
.+.+++..+ . ...++..+...|...|++++|...+++..+.. -.++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 766665431 1 12356666677777777777777777665421 0111 12566666667777777777
Q ss_pred HHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHH
Q 046956 452 WRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM----PVEPH----ASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a 519 (574)
...++++.....-.++ ..++..++..|...|++++|.+.++++ +..++ ..++..+...+...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777766542111111 345666677777777777777776665 11111 33455555667777777777
Q ss_pred HHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCchHHHHH
Q 046956 520 ELVANRLFELEPQNA------GSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
...+++++++.+... .++..++.++...|+.......
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 369 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNS 369 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHH
Confidence 777777777776662 3556666666666666554433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=142.92 Aligned_cols=261 Identities=13% Similarity=0.024 Sum_probs=165.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCcchHHHHHHHHHHh----CCCCChhhHHHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDE----FILVSLMSACSQVGNLDLSNWVDSYLSRS----HMDLSRAHVIAAL 372 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l 372 (574)
+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...++.+.+. +..+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344445555555555555555443211 11 23444444555555555555555444332 1122222356666
Q ss_pred HHHhHhcCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC
Q 046956 373 VDMNAKCGNMDRAAELFETMPN---------RDVVSYCSMIKGLSIHGH-----------------GRQAVSLFDRMLSE 426 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~ 426 (574)
+..|...|++++|...+++..+ ....++..+...|...|+ +++|+..+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6667777777777766665542 123366677777777777 77787777776542
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-C-
Q 046956 427 ----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-P- 495 (574)
Q Consensus 427 ----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 495 (574)
+-.+. ..++..+...+...|++++|...++++.+...-.++ ...+..++.+|...|++++|.+.++++ .
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11222 236777788888889999988888887753111112 236778888888999999998888776 1
Q ss_pred --CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 496 --VEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQN------AGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 496 --~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
...+ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 4566677788889999999999999988874332 44788899999999999999999988764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=155.78 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=110.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP-------NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLT 440 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 440 (574)
+|++++++|++.|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 79999999999999999999997653 58999999999999999999999999999999999999999999999
Q ss_pred HHhccCc-HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 046956 441 ACSHVGL-VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLN 492 (574)
Q Consensus 441 ~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 492 (574)
++++.|+ .++|.++|++|.+. |+.||..+|+.++....+.+-++...++..
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 9999998 57899999999998 999999999999877777655544444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-14 Score=128.36 Aligned_cols=224 Identities=10% Similarity=-0.004 Sum_probs=166.9
Q ss_pred HHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHc
Q 046956 337 MSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--RD----VVSYCSMIKGLSIH 410 (574)
Q Consensus 337 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~ 410 (574)
...+...|+++.|...++.+.+..+.... .+..++..|...|++++|.+.++++.+ ++ ...|..+...+...
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPY--IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCCCST--THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 33444455555555555555444332222 455666677777777777777766543 22 23478888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
|++++|+..+++..+.. +.+..++..+...+...|++++|...++++.+ ..+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999853 33456899999999999999999999999986 3445577788888444455699999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC-----chhHHHHHHHHHhcCCchHHHHHH
Q 046956 491 LNSM-PVEPH-ASAWGALLGACKLYSD---IELGELVANRLFELE---PQN-----AGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 491 ~~~~-~~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
|+++ ...|+ ...+..+...+...|+ +++|+..++++++.. |+. ..++..++.+|...|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9988 44454 6677777788888888 888999999999874 442 258889999999999999999999
Q ss_pred HHHHhCCC
Q 046956 558 SKMKERGL 565 (574)
Q Consensus 558 ~~~~~~~~ 565 (574)
+++.+..+
T Consensus 245 ~~al~~~p 252 (272)
T 3u4t_A 245 KNILALDP 252 (272)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCc
Confidence 99987654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-13 Score=122.48 Aligned_cols=230 Identities=13% Similarity=-0.009 Sum_probs=166.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CHhHHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 046956 261 ERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR-DVVAWSALISGYAQ----NGQPDEAVKIFSDMCSKNVQPDEFILVS 335 (574)
Q Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 335 (574)
+.++.++..+...|...|++++|+..|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 346778889999999999999999999877654 57788889999999 999999999999999876 5666666
Q ss_pred HHHHHhc----cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH--
Q 046956 336 LMSACSQ----VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSI-- 409 (574)
Q Consensus 336 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-- 409 (574)
+...+.. .++.++|...++...+.+ +...+..+...|..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK-----------------------------------YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC-----------------------------------CccHHHHHHHHHHcCC
Confidence 7767766 677777777666665543 23344445555555
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh---
Q 046956 410 --HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH----VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR--- 480 (574)
Q Consensus 410 --~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 480 (574)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. .+...+..+...|..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCC
Confidence 666777777777776644 44455566666665 77777777777777763 245666677777777
Q ss_pred -cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCch
Q 046956 481 -TGHLKSAYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 481 -~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
.+++++|++.+++.-...+...+..+...+.. .+++++|+..++++++.+|+++.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 77888888877776212235566667777777 88888888888888888876443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-14 Score=135.90 Aligned_cols=228 Identities=10% Similarity=0.014 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCC-HHHHHHHHhhCCC---CChhHHHHHHH
Q 046956 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGN-MDRAAELFETMPN---RDVVSYCSMIK 405 (574)
Q Consensus 330 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~ 405 (574)
...|..+...+...|++++|...++.+++.++.... ++..++.++...|+ +++|+..|+++.+ .+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~--a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT--VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH--HHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 456777777888999999999999999987765443 78999999999997 9999999999873 46789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh-cCC
Q 046956 406 GLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR-TGH 483 (574)
Q Consensus 406 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~ 483 (574)
++...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++++ ..+-+...|+.+..++.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999994 55 456999999999999999999999999997 344567899999999999 666
Q ss_pred HHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC------
Q 046956 484 LKSA-----YELLNSM-PVEP-HASAWGALLGACKLYS--DIELGELVANRLFELEPQNAGSYVLLSNIYATAD------ 548 (574)
Q Consensus 484 ~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------ 548 (574)
.++| ++.++++ ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..|+++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 4777776 4455 4678888888888888 689999999998 889999999999999999975
Q ss_pred ---CchHHHHHHHHH-HhCC
Q 046956 549 ---RWLDVCLVRSKM-KERG 564 (574)
Q Consensus 549 ---~~~~a~~~~~~~-~~~~ 564 (574)
.+++|.++++++ .+.+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhC
Confidence 258999999998 6544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=131.37 Aligned_cols=263 Identities=16% Similarity=0.062 Sum_probs=175.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCcchHHHHHHHHHHh----CCCCChhhHHHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPD----EFILVSLMSACSQVGNLDLSNWVDSYLSRS----HMDLSRAHVIAAL 372 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l 372 (574)
....+...|++++|...|+++.+.... + ...+..+...+...|+++.|...+..+.+. +..+....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455555555555555555543211 1 234444555555555555555555544322 2222223356667
Q ss_pred HHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 046956 373 VDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGH--------------------GRQAVSLFDRM 423 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m 423 (574)
+..|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777777777777766542 22 2367777778888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 424 LSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 424 ~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
... +..+. ..++..+...+...|++++|...++++.+...-.++ ...+..++..+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 11222 236777888889999999999999888753111111 247788889999999999999998876
Q ss_pred ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 495 ----PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQN------AGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 495 ----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
+..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11122 4466677788999999999999999999875432 447889999999999999999999998
Q ss_pred HhCC
Q 046956 561 KERG 564 (574)
Q Consensus 561 ~~~~ 564 (574)
.+..
T Consensus 330 ~~~~ 333 (338)
T 3ro2_A 330 LEIS 333 (338)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 7644
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=121.98 Aligned_cols=190 Identities=12% Similarity=0.015 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHh
Q 046956 297 AWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN 376 (574)
Q Consensus 297 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (574)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+..+.... .+..++.++
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~--a~~~lg~~~ 83 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG--GYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHH
Confidence 34444444444455555555554444331 223334444444444444444444444444443322211 344444444
Q ss_pred Hhc-----------CCHHHHHHHHhhCC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 377 AKC-----------GNMDRAAELFETMP--NR-DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442 (574)
Q Consensus 377 ~~~-----------g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 442 (574)
.+. |++++|...|++.. .| +...|..+...+...|++++|+..|++.++.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 44444444444433 12 23444444555555555555555555555433 3444445555555
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS 493 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (574)
...|++++|...|+++.+ ..+.+...+..+..++...|++++|++.+++
T Consensus 162 ~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC-------------
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555544 2222344444555555555555555554444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-13 Score=118.81 Aligned_cols=171 Identities=12% Similarity=0.001 Sum_probs=129.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIH-GHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTAC 442 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~ 442 (574)
.+..++..+...|++++|.+.++++. ..+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 45555556666666666666665554 23456777778888888 888888888888887433444 35778888888
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP--HASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a 519 (574)
...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|+.+.+
T Consensus 124 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 8999999999999988873 3445778888899999999999999998887 3233 556666666778899999999
Q ss_pred HHHHHHHHhhCCCCchhHHHH
Q 046956 520 ELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l 540 (574)
..+++.+.+..|+++.....+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999988876554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=142.32 Aligned_cols=260 Identities=13% Similarity=0.055 Sum_probs=139.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcCC---CCc----hhHHHHHHHHHHhcCChHHHHHHHhhCCC---------CCHhHH
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEMP---ERN----VVSYTTMIDGYAKVGDMTSARSLFEAAPD---------RDVVAW 298 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 298 (574)
.+......+...|++++|...++... +.+ ..++..+...|...|++++|...+++... ....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34445556666666666666666221 122 23555666666666666666666554321 013355
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------cchHHHHH
Q 046956 299 SALISGYAQNGQPDEAVKIFSDMCSKNV-QPD----EFILVSLMSACSQVGN--------------------LDLSNWVD 353 (574)
Q Consensus 299 ~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~ 353 (574)
..+...|...|++++|...+++..+... .++ ..++..+...+...|+ ++.|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666666544210 011 2345555556666666 66666666
Q ss_pred HHHHHh----CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHH
Q 046956 354 SYLSRS----HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLF 420 (574)
Q Consensus 354 ~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~ 420 (574)
....+. +..+.....+..++..|...|++++|...+++..+ ++ ..++..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 554432 11222222455666666666666666666665542 11 125556666666666666666666
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHH
Q 046956 421 DRMLSEGL-TPD----EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELL 491 (574)
Q Consensus 421 ~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 491 (574)
++..+... .++ ..++..+...+...|++++|...++++.+...-..+ ..++..+..+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66554210 011 235555666666666666666666665542111111 345555666666666666666666
Q ss_pred HhC
Q 046956 492 NSM 494 (574)
Q Consensus 492 ~~~ 494 (574)
++.
T Consensus 331 ~~a 333 (406)
T 3sf4_A 331 EKH 333 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=141.24 Aligned_cols=188 Identities=10% Similarity=-0.024 Sum_probs=159.9
Q ss_pred HHHHHHHHhHhcCCH-HHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNM-DRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~-~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
.+..++..+...|++ ++|++.|++.. . .+...|..+...|...|++++|...|++..+ ..|+...+..+...+.
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHHHHH
Confidence 666677777777777 77777777665 2 3467888888899999999999999999988 4677778888899999
Q ss_pred cc---------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC----CHH
Q 046956 444 HV---------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT--------GHLKSAYELLNSM-PVEP----HAS 501 (574)
Q Consensus 444 ~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p----~~~ 501 (574)
.. |++++|...++++.+. .+.+...|..+..+|... |++++|++.|+++ ...| +..
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 98 9999999999999873 445678899999999988 9999999999988 4455 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
.|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8889999999999999999999999999999999999999999999999999976543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=9e-14 Score=128.08 Aligned_cols=220 Identities=12% Similarity=-0.061 Sum_probs=178.7
Q ss_pred hccCCcchHHHHHHHHHHhCC--CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHH
Q 046956 341 SQVGNLDLSNWVDSYLSRSHM--DLSRAHVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQ 415 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 415 (574)
...|++++|...++.+.+... .+.....+..++..+...|++++|...|+++. ..+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345788999999999987643 22344588899999999999999999999876 3467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 046956 416 AVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM- 494 (574)
Q Consensus 416 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (574)
|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999853 335678999999999999999999999999874 344444444555667789999999999766
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 495 PV-EPHASAWGALLGACKLYSDIELGELVANRLFELEPQ----NAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 495 ~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.. .++...+ .++..+...++.++|+..++++++..|. ++..+..++.+|...|++++|...++++.+.+.
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 22 2333333 4667778888999999999999887664 478899999999999999999999999987663
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-11 Score=122.93 Aligned_cols=439 Identities=10% Similarity=0.063 Sum_probs=256.7
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCChHHHHHHhhccC---CCChhhHHHHHHHHHhCCC---chHHHHHHHHhHhC
Q 046956 57 HSHIIKKGLEQDHSLVAHFISLCHSLATPLSYSTAVFNRIV---NPNTFLWNTLLKGYSQNSR---FIEVFTIFVRLIRE 130 (574)
Q Consensus 57 ~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~ 130 (574)
++..+..+ +.|...|..++ ....+.+.++.+..+|+++. +.....|...+..-.+.|+ ++.+..+|++....
T Consensus 55 lE~~l~~n-p~d~~~W~~yi-~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLL-KHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHC-cCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 34444444 45777777777 77777777777777777774 4455567777777777777 77788888777765
Q ss_pred C-CCCCcchHHHHHHHHhccCCc--------HHHHHHHHHHHH-hCC-CCC-cchHHHHHHHHHc---------CCChHH
Q 046956 131 E-AVPDKYTFPLVIKACSHVLSV--------REGTAIHAAVIR-WGV-DED-VFVGTSLIDLYGK---------RKEISC 189 (574)
Q Consensus 131 ~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~ 189 (574)
. ..|+...|...+....+.++. +...++|+..+. .|. .++ ...|...+..... +++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 3 135666666666655444443 233456666554 254 443 2456555554332 223445
Q ss_pred HHHHHccCCC-CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHh-------cCCC
Q 046956 190 ARKVFDEMPE-RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD-------EMPE 261 (574)
Q Consensus 190 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~ 261 (574)
+..+|++... |.. .+..+-..|.. ++.. . +..+...++.- ...+++.|...+. .+..
T Consensus 213 ~R~iy~raL~iP~~-~~~~~w~~Y~~---fe~~------~---~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 213 IRKLYKTLLCQPMD-CLESMWQRYTQ---WEQD------V---NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp HHHHHHHHTTSCCS-SHHHHHHHHHH---HHHH------H---CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHhCccH-HHHHHHHHHHH---HHHh------c---CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhh
Confidence 5556655543 111 01111111110 0000 0 00000000000 0011222222221 1100
Q ss_pred --Cch-hHHHHHHHHHHhcCChHHHHHHHhhCCC------CCHhHHHHHHHHHHhCC-------CchHHHHHHHHHHHCC
Q 046956 262 --RNV-VSYTTMIDGYAKVGDMTSARSLFEAAPD------RDVVAWSALISGYAQNG-------QPDEAVKIFSDMCSKN 325 (574)
Q Consensus 262 --~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~ 325 (574)
|.. ... .....+. .....|...+..--..+ ..+.+..+|++.+..
T Consensus 278 ~~p~~~~~~------------------~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~- 338 (679)
T 4e6h_A 278 NLPITLNQA------------------TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH- 338 (679)
T ss_dssp CCCSSSTTC------------------CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred ccccccccc------------------hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-
Confidence 000 000 0000000 00233444444332222 123455677777664
Q ss_pred CCCCHHHHHHHHHHHhccCCcchHH-HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----------
Q 046956 326 VQPDEFILVSLMSACSQVGNLDLSN-WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---------- 394 (574)
Q Consensus 326 ~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 394 (574)
.+-+...|...+.-+...|+.+.|. .+++......+. +.. ++...+....+.|++++|.++|+.+.+
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-s~~-Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-SAV-LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-CHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3446677777777777778888886 888888765432 233 667778888888888888888887653
Q ss_pred ---CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHH
Q 046956 395 ---RD------------VVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTACSHV-GLVEDGWRFFEA 457 (574)
Q Consensus 395 ---~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 457 (574)
|+ ..+|...+....+.|+.+.|..+|.+..+. + .+....|...+....+. ++.+.|..+|+.
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 21 236888888888889999999999999885 2 22334444333333333 558999999999
Q ss_pred hHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 458 MQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP----HASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 458 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
..+. ++.+...+...++.....|+.+.|..+|+++ ...| ....|...+..-...|+.+.+..+.+++.+..|+
T Consensus 496 ~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 496 GLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9984 4556677788888888999999999999987 3333 2457888888888999999999999999999998
Q ss_pred Cchh
Q 046956 533 NAGS 536 (574)
Q Consensus 533 ~~~~ 536 (574)
++.+
T Consensus 574 ~~~~ 577 (679)
T 4e6h_A 574 VNKL 577 (679)
T ss_dssp CCHH
T ss_pred CcHH
Confidence 7643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=131.75 Aligned_cols=223 Identities=10% Similarity=-0.021 Sum_probs=128.4
Q ss_pred HHhccCCcchHHHHHHHHHHh----CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC-----hhHHHHHH
Q 046956 339 ACSQVGNLDLSNWVDSYLSRS----HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RD-----VVSYCSMI 404 (574)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li 404 (574)
.+...|++++|...+..+.+. +..+....++..++..|...|++++|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344455555555555555432 11111223555666666666666666666555431 11 23566666
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CC-CCcHHHHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AI-VPSPEHYACMV 475 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l~ 475 (574)
..|...|++++|...+++..+. +-.+. ..++..+...|...|++++|...+++..+.. +. +....++..++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 7777777777777777766542 11111 1256666777777777777777777666510 12 22345666777
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-----CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 476 DLLGRTGHLKSAYELLNSM-P-----VEPH-ASAWGALLGACKLYSD---IELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~-----~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
.+|.+.|++++|.+.+++. . ..|. ...+..+...+...|+ +++|+..+++. ...|.....+..++.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 7777777777777777665 1 0121 1223444566666777 56666666554 223444556777788888
Q ss_pred hcCCchHHHHHHHHHHh
Q 046956 546 TADRWLDVCLVRSKMKE 562 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~ 562 (574)
..|++++|...+++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888887777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-13 Score=139.50 Aligned_cols=162 Identities=16% Similarity=0.211 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
..+|+.+...|...|++++|+..|++.++ +.|+ ..++..+..+|.+.|++++|+..|+++.+. -+-+...|..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 46788888899999999999999999988 4565 458889999999999999999999999873 334578899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHH
Q 046956 476 DLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (574)
.+|...|++++|++.|+++ ...| +...+..+..++...|++++|+..|+++++++|+++.++..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999887 5555 4678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 046956 554 CLVRSKMKE 562 (574)
Q Consensus 554 ~~~~~~~~~ 562 (574)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-13 Score=132.29 Aligned_cols=266 Identities=15% Similarity=0.094 Sum_probs=180.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC--C-CH----hHHHHHHHHHHhCCCchHHHHHHHHHHHC----CC-CCCHHHHH
Q 046956 267 YTTMIDGYAKVGDMTSARSLFEAAPD--R-DV----VAWSALISGYAQNGQPDEAVKIFSDMCSK----NV-QPDEFILV 334 (574)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~ 334 (574)
+..+...+...|++++|+..|++..+ + +. .+|..+...|...|++++|...+++..+. +. ......+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33455566666666666666665432 1 22 35666666666777777777766665432 11 11234555
Q ss_pred HHHHHHhccCCcchHHHHHHHHHHh----CCCCChhhHHHHHHHHhHhcCC-----------------HHHHHHHHhhCC
Q 046956 335 SLMSACSQVGNLDLSNWVDSYLSRS----HMDLSRAHVIAALVDMNAKCGN-----------------MDRAAELFETMP 393 (574)
Q Consensus 335 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~ 393 (574)
.+...+...|++++|...+..+.+. +..+.....+..++..|...|+ +++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666667777777777766665543 2222333367777888888888 888887777654
Q ss_pred C-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 046956 394 N-----R----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPD----EVAFTIVLTACSHVGLVEDGWRFFEAMQ 459 (574)
Q Consensus 394 ~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 459 (574)
+ . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2 1 234778888889999999999999998776310 012 1377888888999999999999999887
Q ss_pred hhcCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046956 460 NVYAIVP----SPEHYACMVDLLGRTGHLKSAYELLNSM-PV---EPH----ASAWGALLGACKLYSDIELGELVANRLF 527 (574)
Q Consensus 460 ~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 527 (574)
....-.. ...++..++.+|...|++++|.+.++++ .. .++ ..++..+...+...|++++|...+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6411111 1467788899999999999999999876 11 112 3466677788999999999999999999
Q ss_pred hhCCC
Q 046956 528 ELEPQ 532 (574)
Q Consensus 528 ~~~p~ 532 (574)
++.+.
T Consensus 371 ~~~~~ 375 (411)
T 4a1s_A 371 QLAXX 375 (411)
T ss_dssp HHCCH
T ss_pred HHHhh
Confidence 98654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-12 Score=111.36 Aligned_cols=165 Identities=13% Similarity=0.098 Sum_probs=140.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
+|..++..|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|...+.+..... +.+...+..+...+..
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHH
Confidence 788899999999999999999988762 466788999999999999999999999988843 3345577788888999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.++++.+...+.++.. ..+.+...+..++.+|.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..
T Consensus 86 ~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987 44556788889999999999999999999987 4455 577888899999999999999999
Q ss_pred HHHHHhhCCCCch
Q 046956 523 ANRLFELEPQNAG 535 (574)
Q Consensus 523 ~~~~~~~~p~~~~ 535 (574)
++++++++|+++.
T Consensus 164 ~~~al~~~p~~a~ 176 (184)
T 3vtx_A 164 FKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHTTHHHHH
T ss_pred HHHHHhCCccCHH
Confidence 9999999998643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-12 Score=112.05 Aligned_cols=160 Identities=14% Similarity=-0.009 Sum_probs=92.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Confidence 33344444444444444444443321 122334444444455555555555555555442 222344455555555555
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 482 GHLKSAYELLNSM-PV-EPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 482 g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
|++++|.+.++++ .. ..+...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|...+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555554 11 224455666667777777788888888888777787777888888888888888888888877
Q ss_pred HHhCC
Q 046956 560 MKERG 564 (574)
Q Consensus 560 ~~~~~ 564 (574)
+.+..
T Consensus 170 ~~~~~ 174 (186)
T 3as5_A 170 ANELD 174 (186)
T ss_dssp HHHHH
T ss_pred HHHcC
Confidence 76544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-13 Score=126.53 Aligned_cols=264 Identities=15% Similarity=0.101 Sum_probs=168.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--C-C----HhHHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 046956 269 TMIDGYAKVGDMTSARSLFEAAPD--R-D----VVAWSALISGYAQNGQPDEAVKIFSDMCSK----NVQP-DEFILVSL 336 (574)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l 336 (574)
.....+...|++++|...|++..+ + + ...+..+...+...|++++|...+++..+. +..| ...++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455556666666666554432 1 2 234555666666666666666666554332 1111 13345555
Q ss_pred HHHHhccCCcchHHHHHHHHHHhCC----CCChhhHHHHHHHHhHhcCC--------------------HHHHHHHHhhC
Q 046956 337 MSACSQVGNLDLSNWVDSYLSRSHM----DLSRAHVIAALVDMNAKCGN--------------------MDRAAELFETM 392 (574)
Q Consensus 337 l~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 392 (574)
...+...|++++|...+....+... ......++..++..|...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 5566666666666666665543211 11112256667777777777 77777777665
Q ss_pred CC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 046956 393 PN-----R----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAM 458 (574)
Q Consensus 393 ~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 458 (574)
.+ . ....+..+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 41 1 1346777888888999999999999887652 11111 236778888899999999999999888
Q ss_pred HhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 459 QNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-P---VEPH----ASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 459 ~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
.....-..+ ..++..++..+...|++++|.+.++++ . ...+ ..++..+...+...|++++|...++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 753111111 466778889999999999999998876 1 1112 346667778899999999999999999
Q ss_pred HhhCCC
Q 046956 527 FELEPQ 532 (574)
Q Consensus 527 ~~~~p~ 532 (574)
+++.+.
T Consensus 330 ~~~~~~ 335 (338)
T 3ro2_A 330 LEISRE 335 (338)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 988654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-10 Score=116.78 Aligned_cols=215 Identities=6% Similarity=0.001 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHH-HHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046956 349 SNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA-ELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424 (574)
Q Consensus 349 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 424 (574)
+..+|+.++...+... .++...+..+...|+.++|. ++|++... .+...|-..+...-..|++++|..+|++++
T Consensus 328 v~~~Ye~aL~~~p~~~--~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAP--EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHTTTCH--HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567777776644422 27888888888999999996 99988763 355677888888889999999999999988
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC-
Q 046956 425 SEG---------LTPD------------EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG- 482 (574)
Q Consensus 425 ~~g---------~~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 482 (574)
... -.|+ ...|...+....+.|..+.|..+|.++.+. ........|...+..-.+.|
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCC
Confidence 631 0142 236777888888889999999999999873 12223455555554444554
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHhcCCchHHHHHH
Q 046956 483 HLKSAYELLNSM-P-VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ---NAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 483 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
+.+.|.++|+.. . ...+...|...+......|+.+.|..+|++++...|+ ....|......-...|+.+.+..+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 589999999887 2 2235666778888888899999999999999998873 4567888888888999999999999
Q ss_pred HHHHhCCCc
Q 046956 558 SKMKERGLR 566 (574)
Q Consensus 558 ~~~~~~~~~ 566 (574)
+++.+..+.
T Consensus 565 ~R~~~~~P~ 573 (679)
T 4e6h_A 565 KRFFEKFPE 573 (679)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHhCCC
Confidence 999887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-11 Score=113.52 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCc-------chHHHHHHHHHHh-CCCCChhhHHHHHHHHh
Q 046956 312 DEAVKIFSDMCSKNVQPDEFILVSLMSACS-------QVGNL-------DLSNWVDSYLSRS-HMDLSRAHVIAALVDMN 376 (574)
Q Consensus 312 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 376 (574)
++|..+|++..... +-+...|..++..+. ..|+. ++|..++++.++. .+. ...++..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc--cHHHHHHHHHHH
Confidence 56666777766542 334555555555543 24665 6777777777763 332 222677777778
Q ss_pred HhcCCHHHHHHHHhhCCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHH
Q 046956 377 AKCGNMDRAAELFETMPN--R-DVV-SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS-HVGLVEDG 451 (574)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~a 451 (574)
.+.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888877663 3 233 78888888888888888888888888753 233445544333322 36888888
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P---VEP--HASAWGALLGACKLYSDIELGELVANR 525 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 525 (574)
..+|+++.+. .+.+...|..++..+.+.|++++|..+|+++ . ..| ....|..++..+...|+.+.|..++++
T Consensus 189 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888873 3445777888888888888888888888877 2 244 356777777888888888888888888
Q ss_pred HHhhCCCCchh
Q 046956 526 LFELEPQNAGS 536 (574)
Q Consensus 526 ~~~~~p~~~~~ 536 (574)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 88888876543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-12 Score=122.27 Aligned_cols=230 Identities=8% Similarity=0.015 Sum_probs=170.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCC-----CChhhHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSK----NVQP-DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD-----LSRAHVIA 370 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 370 (574)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.... +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455567777888888877777653 1111 2356666777777788888887777776653221 22233678
Q ss_pred HHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 046956 371 ALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFT 436 (574)
Q Consensus 371 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~ 436 (574)
.++..|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999998887662 22 247888999999999999999999998762 33244 45888
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcC---CCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVYA---IVPSPEHYACMVDLLGRTGH---LKSAYELLNSMPVEPH-ASAWGALLGA 509 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 509 (574)
.+...+.+.|++++|...+++..+... .+.....+..+...+...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999998876421 12223346678889999999 9999999999865444 3456667799
Q ss_pred HHhcCCHHHHHHHHHHHHhhC
Q 046956 510 CKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~ 530 (574)
|...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=125.98 Aligned_cols=54 Identities=7% Similarity=-0.106 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.+...+.+.++...++++....|..+.++..++.+|...|++++|.+++++..+
T Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 253 KQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455556666667776666777777777777777777777777777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-12 Score=122.69 Aligned_cols=223 Identities=9% Similarity=-0.026 Sum_probs=140.7
Q ss_pred HHhccCCcchHHHHHHHHHHhC----CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC-----hhHHHHHH
Q 046956 339 ACSQVGNLDLSNWVDSYLSRSH----MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RD-----VVSYCSMI 404 (574)
Q Consensus 339 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li 404 (574)
.+...|++++|...+..+.+.. ..+....++..++..|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3455666666666666655431 1122233566677777777777777766665441 11 34567777
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCCcHHHHHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AIVPSPEHYACMVD 476 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~ 476 (574)
..|...|++++|...+++..+. +-.+. ..++..+..+|...|++++|...+++..... +.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7788888888888888776652 11111 2366777777888888888888888776511 22223566777888
Q ss_pred HHhhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 477 LLGRTGHLKSAYELLNSM----PV--EPHA-SAWGALLGACKLYSD---IELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
++.+.|++++|.+.+++. .. .|.. ..+..+...+...++ +.+|+..+++ ....|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHH
Confidence 888888888888888765 11 2222 233444455666777 6666666665 12234445567788888888
Q ss_pred cCCchHHHHHHHHHHh
Q 046956 547 ADRWLDVCLVRSKMKE 562 (574)
Q Consensus 547 ~g~~~~a~~~~~~~~~ 562 (574)
.|++++|...+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888887754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=127.90 Aligned_cols=239 Identities=10% Similarity=0.037 Sum_probs=173.4
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHh------C
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSK-------NVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRS------H 360 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 360 (574)
+..++..+...+...|++++|...++++.+. ........+..+...+...|++++|...+..+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567889999999999999999999998873 22334567888888999999999999999998865 3
Q ss_pred CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---
Q 046956 361 MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-------R----DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE--- 426 (574)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 426 (574)
..+.....+..++..|...|++++|.+.++++.+ + ....+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444455888999999999999999999987652 1 2356888889999999999999999998874
Q ss_pred ---CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhc------CCCCc-------HHHHHHHHHHHhhcCCHHHHHH
Q 046956 427 ---GLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVY------AIVPS-------PEHYACMVDLLGRTGHLKSAYE 489 (574)
Q Consensus 427 ---g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 489 (574)
+..|.. .++..+...+...|++++|...++++.+.. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 223433 478888999999999999999999998631 01111 1222233334445556666666
Q ss_pred HHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 490 LLNSMP-VEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 490 ~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
.++... ..| ...++..+...|...|++++|...+++++++.|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 666663 334 3556778889999999999999999999998775
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-11 Score=114.33 Aligned_cols=214 Identities=8% Similarity=0.047 Sum_probs=171.7
Q ss_pred chHHHHHHHHHHhCCCCChhhHHHHHHHHhH-------hcCCH-------HHHHHHHhhCCC---C-ChhHHHHHHHHHH
Q 046956 347 DLSNWVDSYLSRSHMDLSRAHVIAALVDMNA-------KCGNM-------DRAAELFETMPN---R-DVVSYCSMIKGLS 408 (574)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~ 408 (574)
+.|...|+.+++..+.... ++..++..+. +.|++ ++|..+|++..+ | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~--~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPD--IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5677788888876543332 6777777765 35886 899999998653 3 4568999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh-hcCCHH
Q 046956 409 IHGHGRQAVSLFDRMLSEGLTPD-EV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG-RTGHLK 485 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~ 485 (574)
..|++++|..+|+++++ +.|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998 4565 33 7899999999999999999999999973 3445566654444432 379999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CchhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 486 SAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFEL---EPQ-NAGSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 486 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
+|.++|+++ ...| +...|..++..+...|++++|+.+|+++++. .|+ ...++..++..+...|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 3334 5778888889999999999999999999996 443 677899999999999999999999999
Q ss_pred HHhCCCc
Q 046956 560 MKERGLR 566 (574)
Q Consensus 560 ~~~~~~~ 566 (574)
+.+..+.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9876653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-11 Score=109.99 Aligned_cols=205 Identities=9% Similarity=0.034 Sum_probs=148.2
Q ss_pred CCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-ChhHHHHHH
Q 046956 328 PDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-DVVSYCSMI 404 (574)
Q Consensus 328 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 404 (574)
.|...+......+...|++++|...+..+.+.....+.. .+..++..+...|++++|.+.|++..+ | +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSV-TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcH-HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 355777778888888899999999998888877634444 566688888888999999888887762 3 456788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc---HHHHHH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPD-E-------VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS---PEHYAC 473 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 473 (574)
..|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...|+++.+ ..|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 8888888999999888888874 343 3 3466777778888888888888888875 2443 567777
Q ss_pred HHHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 474 MVDLLGRTGHL--KSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 474 l~~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
+..+|...|+. +++..+. ..+...+.... ....+.+++|+..++++++++|+++.+...+..+..
T Consensus 159 l~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 77777666543 2222211 12233333322 334566899999999999999999998888876643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-10 Score=111.96 Aligned_cols=53 Identities=17% Similarity=0.025 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCC----CCCH----hHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 270 MIDGYAKVGDMTSARSLFEAAP----DRDV----VAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
....+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344455566666665554421 1111 134444455555566666666555544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.2e-12 Score=111.33 Aligned_cols=187 Identities=12% Similarity=-0.017 Sum_probs=94.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP---N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTAC 442 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~ 442 (574)
.+...+..+...|++++|.+.|++.. . ++...+..+..++...|++++|+..+++..+ ..|+. ..+..+..++
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 45555555555555555555555543 1 3444444455555555555555555555555 23333 2555555555
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcH-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSP-------EHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---ASAWGALLGACK 511 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~ 511 (574)
...|++++|...++++.+. .+.+. ..|..+...+...|++++|++.|+++ ...|+ ...+..+...+.
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555555555555555542 12222 33444455555555555555555544 33343 223333333332
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
. .+...++++..+.+.++..+..+ .....|.+++|...+++..+..+
T Consensus 165 ~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 165 N-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp H-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred H-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 2 22333444444444443333222 23334445999999999887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-11 Score=103.11 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=144.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH 444 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 444 (574)
.+..++..+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 677888899999999999999999874 467788999999999999999999999998853 3456688889999999
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|...++++.+ ..+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999987 34556788899999999999999999999987 3333 567888888999999999999999
Q ss_pred HHHHHhhCCCCchh
Q 046956 523 ANRLFELEPQNAGS 536 (574)
Q Consensus 523 ~~~~~~~~p~~~~~ 536 (574)
++++++..|+++..
T Consensus 167 ~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 167 FKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHCCCGG
T ss_pred HHHHHHcCCCchhh
Confidence 99999998887654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-12 Score=124.54 Aligned_cols=179 Identities=10% Similarity=0.044 Sum_probs=156.0
Q ss_pred HHHHHHHHhhCC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 046956 382 MDRAAELFETMP---NRDVVSYCSMIKGLSIHGHG-RQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFE 456 (574)
Q Consensus 382 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 456 (574)
++++...++... ..+...|..+...+...|++ ++|+..|++.++. .|+ ...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555443 34678899999999999999 9999999999985 455 6699999999999999999999999
Q ss_pred HhHhhcCCCCcHHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 046956 457 AMQNVYAIVPSPEHYACMVDLLGRT---------GHLKSAYELLNSM-PVEP-HASAWGALLGACKLY--------SDIE 517 (574)
Q Consensus 457 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~~ 517 (574)
++.+ ..|+...+..+..+|... |++++|++.++++ ...| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9995 357788999999999999 9999999999988 4445 577888888999888 9999
Q ss_pred HHHHHHHHHHhhCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 518 LGELVANRLFELEP---QNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 518 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+|+..++++++++| +++.++..++.+|...|++++|.+.+++..+...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999987553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-10 Score=109.19 Aligned_cols=229 Identities=8% Similarity=0.019 Sum_probs=165.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCC-----CCChhhHH
Q 046956 300 ALISGYAQNGQPDEAVKIFSDMCSKNV-QP----DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHM-----DLSRAHVI 369 (574)
Q Consensus 300 ~li~~~~~~~~~~~A~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~ 369 (574)
.....+...|++++|+..|++..+... .+ ...++..+...+...|+++.|...+....+... .+....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456677777777777777654311 11 234566666677777777777777776654321 11223367
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 046956 370 AALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLS-----EGLTPDEVAF 435 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~ 435 (574)
..++..|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 7888888889999988888877652 22 24678888999999999999999999876 32 2235588
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCC---CCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHH
Q 046956 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAI---VPSPEHYACMVDLLGRTGH---LKSAYELLNSMPVEPHA-SAWGALLG 508 (574)
Q Consensus 436 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~ 508 (574)
..+...+.+.|++++|...+++..+...- +.....+..+...+...|+ +++|+..+++....|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88999999999999999999998875222 2223556677778888888 99999999987544443 35556778
Q ss_pred HHHhcCCHHHHHHHHHHHHhh
Q 046956 509 ACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~ 529 (574)
.|...|++++|...++++++.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999998875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=126.78 Aligned_cols=166 Identities=11% Similarity=0.186 Sum_probs=138.4
Q ss_pred CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 046956 362 DLSRAHVIAALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTI 437 (574)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ 437 (574)
.|+....++.++..|.+.|++++|++.|++.. . .+..+|+.+..+|.+.|++++|+..|++.++ +.|+ ...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 34445578888999999999999999998876 2 3567889999999999999999999999988 4565 458899
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 515 (574)
+..++...|++++|++.|+++.+. -+-+...|..++.+|...|++++|++.|+++ ...|+ ...+..+...+...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 999999999999999999999873 3345788999999999999999999999887 55564 6678888899999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 046956 516 IELGELVANRLFELEP 531 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p 531 (574)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999999888644
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.4e-11 Score=108.66 Aligned_cols=173 Identities=8% Similarity=-0.054 Sum_probs=104.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIH-GHGRQAVSLFDRMLSEGLTPD------ 431 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~------ 431 (574)
++..++.+|.+.|++++|+..|++..+ .+ ..+++.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 445555555555555555555544431 11 23566777777775 8888888888877652 221
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH---
Q 046956 432 -EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-----EHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS--- 501 (574)
Q Consensus 432 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--- 501 (574)
..++..+...+...|++++|+..|+++.+...-.+.. ..|..++.++...|++++|...+++. ...|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356777778888888888888888877641111111 24666777788888888888888776 4444321
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 502 ---AWGALLGACK--LYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 502 ---~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
.+..++.++. ..+++++|+..|+++.+++|.+...+..+-.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 2333444443 3466788888887777777765554444433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.9e-11 Score=108.57 Aligned_cols=223 Identities=11% Similarity=0.049 Sum_probs=155.7
Q ss_pred hccCCcchHHHHHHHHHHh-----C-CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC----------C-ChhHHHHH
Q 046956 341 SQVGNLDLSNWVDSYLSRS-----H-MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN----------R-DVVSYCSM 403 (574)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l 403 (574)
...|+++.|...+++..+. + ..+....++..++..|...|++++|...++++.+ + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4678899999888887753 1 2234444788899999999999999999887652 1 23578888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc-----C-CCCcHHH
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSE------GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY-----A-IVPSPEH 470 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~ 470 (574)
...|...|++++|...+++..+. .-.|+ ..++..+...+...|++++|..+++++.+.. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 11233 3478888889999999999999999887631 1 2223567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCC
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSMP----------VEPH-ASAWGALLGACKLYSD------IELGELVANRLFELEPQN 533 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~ 533 (574)
+..++.+|...|++++|.+.++++. ..+. ...+..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999987761 1222 2233333333333222 333333333333334666
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 534 AGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
+.++..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999988753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-09 Score=95.31 Aligned_cols=243 Identities=11% Similarity=0.024 Sum_probs=139.6
Q ss_pred HHHHhcCChHHHHHHHhhCCCCC-HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHH
Q 046956 272 DGYAKVGDMTSARSLFEAAPDRD-VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSN 350 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 350 (574)
+-..-.|++..++.-...+...+ ...-.-+.++|...|++... ..-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 34455688888877666554322 22333355777777777642 12234433433333333 222 45
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046956 351 WVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-----RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLS 425 (574)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 425 (574)
..++.....+ .++.. .+..++.++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~-~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPY-ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHTTTTS-CCCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555444 22233 445677777777777777777776632 2345666677777777777777777777776
Q ss_pred CCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 046956 426 EGLTP-----DEVAFTIVLTA--CSHVG--LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 426 ~g~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (574)
..| +..+...++.+ ....| ++.+|..+|+++... .|+...-..+..++.+.|++++|.+.++.+ .
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355 24455555555 22233 677777777777642 333222233333677777777777777654 1
Q ss_pred C----------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 496 V----------EPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 496 ~----------~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
. .|+ +.++..++......|+ +|.++++++.+..|++|.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 243 3444455545555565 67777777777777776554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=101.88 Aligned_cols=142 Identities=8% Similarity=-0.036 Sum_probs=102.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG 482 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 482 (574)
...+...|++++|+..+++... ..|+. ..+..+...|.+.|++++|++.|+++.+. .+-+...|..++.+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3344455677777777777654 23433 25566777777888888888888877762 3445677777888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 483 HLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV-ANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 483 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
++++|+..|+++ ...| +...+..+...+...|++++|.+. ++++++++|+++.++...+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888776 4455 466777788888888888766554 689999999999999999988888875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-10 Score=100.61 Aligned_cols=183 Identities=12% Similarity=0.003 Sum_probs=119.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE----VAFTI 437 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ 437 (574)
.+..++..+.+.|++++|...|+++.+ |+ ...+..+..+|...|++++|+..|+++++. .|+. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 455566777777888888888777652 32 245666777777788888888888877763 3332 13444
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 046956 438 VLTACSH------------------VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH 499 (574)
Q Consensus 438 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 499 (574)
+..++.. .|++++|...|+++.+. .+-+...+........-.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~--------------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL--------------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------
Confidence 4444443 34566666666666542 222222222111100000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNA---GSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIP 569 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 569 (574)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++++...+.....
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 00112445778899999999999999999999986 57999999999999999999999999988765544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=105.43 Aligned_cols=86 Identities=10% Similarity=-0.017 Sum_probs=52.5
Q ss_pred HHHHHHHccCChHHHHHHHhc---CCC-Cch----hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----HhHHHH
Q 046956 238 ALIGGLVKIGDLRSARQLFDE---MPE-RNV----VSYTTMIDGYAKVGDMTSARSLFEAAPD-----RD----VVAWSA 300 (574)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~---~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 300 (574)
.....+...|++++|...++. ..+ .+. .++..+...+...|++++|.+.+++... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344456667888888777662 112 121 1455666777778888888877766542 11 123455
Q ss_pred HHHHHHhCCCchHHHHHHHHHHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCS 323 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~ 323 (574)
+...+...|++++|...+++..+
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~ 121 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQ 121 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66667777777777777776654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-10 Score=104.00 Aligned_cols=183 Identities=13% Similarity=0.025 Sum_probs=124.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--R-D---VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPD-EVAFTIVL 439 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~l~ 439 (574)
.+..++..+.+.|++++|...|+.+.+ | + ...+..+..+|...|++++|+..|++.++... .|. ...+..+.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 566667777777777777777777653 3 2 45667777777788888888888888777421 112 23566666
Q ss_pred HHHhc--------cCcHHHHHHHHHHhHhhcCCCCcHHHH-----------------HHHHHHHhhcCCHHHHHHHHHhC
Q 046956 440 TACSH--------VGLVEDGWRFFEAMQNVYAIVPSPEHY-----------------ACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 440 ~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
.++.. .|++++|...|+++.+. .+.+.... ..++..|.+.|++++|+..|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 67766 78888888888887764 22222222 55678888999999999988877
Q ss_pred -CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCchH
Q 046956 495 -PVEPH----ASAWGALLGACKLY----------SDIELGELVANRLFELEPQNAG---SYVLLSNIYATADRWLD 552 (574)
Q Consensus 495 -~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~ 552 (574)
...|+ ...+..+..++... |++++|+..++++++..|+++. +...+..++...|++++
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 22333 34566666777655 8889999999999999999864 44555655555555444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-11 Score=109.09 Aligned_cols=191 Identities=11% Similarity=0.014 Sum_probs=139.2
Q ss_pred HHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHH
Q 046956 372 LVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL---TPD--EVAFTI 437 (574)
Q Consensus 372 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~ 437 (574)
.+..|...|++++|.+.|.+..+ .+ ..+|+.+..+|...|++++|+..+++.++... .+. ..++..
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35567788999999888876652 11 45889999999999999999999999876310 111 247888
Q ss_pred HHHHHhcc-CcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H-----HHH
Q 046956 438 VLTACSHV-GLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---A-----SAW 503 (574)
Q Consensus 438 l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~ 503 (574)
+...|... |++++|+..|++..+...-..+ ..++..++..+.+.|++++|++.|+++ ...|+ . ..+
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 89999996 9999999999998864211111 356888999999999999999999987 22222 1 156
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-----HHHHHHHHH--hcCCchHHHHHHHHHHh
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGS-----YVLLSNIYA--TADRWLDVCLVRSKMKE 562 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~~~~ 562 (574)
..+..++...|++++|+..++++++++|+.... +..++..+. ..+++++|...|+++..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 677788899999999999999999999986553 445566554 45678888888866543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-10 Score=89.81 Aligned_cols=128 Identities=17% Similarity=0.192 Sum_probs=81.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVE-PHASAWGALLGACKL 512 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 512 (574)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.+.++++ ... .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555555555555555442 2223444555555555556666665555554 112 234556666677777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 513 YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.|++++|+..++++++..|.++..+..++.++...|++++|...++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7888888888888888888878888888888888888888888888776544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.8e-10 Score=100.03 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=139.0
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-H
Q 046956 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD----EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-P 468 (574)
Q Consensus 394 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 468 (574)
..+...+..+...+...|++++|+..|+++++. .|+ ...+..+..++.+.|++++|...|+++.+.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 346677888888999999999999999999985 344 458888999999999999999999999985322222 4
Q ss_pred HHHHHHHHHHhh--------cCCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHH
Q 046956 469 EHYACMVDLLGR--------TGHLKSAYELLNSM-PVEPHA-SAW-----------------GALLGACKLYSDIELGEL 521 (574)
Q Consensus 469 ~~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~ 521 (574)
..+..++.++.. .|++++|++.|+++ ...|+. ... ..+...+...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 677788889988 99999999999987 223321 222 455688999999999999
Q ss_pred HHHHHHhhCCCC---chhHHHHHHHHHhc----------CCchHHHHHHHHHHhCCC
Q 046956 522 VANRLFELEPQN---AGSYVLLSNIYATA----------DRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 522 ~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 565 (574)
.++++++..|++ +.++..++.+|... |++++|...++++.+..+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 999999999985 45889999999977 899999999999987653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.9e-10 Score=101.79 Aligned_cols=199 Identities=9% Similarity=0.018 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHh------CCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-------C--
Q 046956 331 FILVSLMSACSQVGNLDLSNWVDSYLSRS------HMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-------R-- 395 (574)
Q Consensus 331 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 395 (574)
.++..+...+...|++++|...+..+.+. +..+....++..++..|...|++++|.+.++++.+ +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444555555555555555544433 22233333566666666666776666666665541 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhc----
Q 046956 396 --DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE------GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVY---- 462 (574)
Q Consensus 396 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 462 (574)
...++..+...|...|++++|...++++.+. +-.|+ ..++..+...+...|++++|..+++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346777778888888888888888887763 11333 3477888888999999999999998887531
Q ss_pred --CCCC-cHHHHHHHHHHHhhc------CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 463 --AIVP-SPEHYACMVDLLGRT------GHLKSAYELLNSMP-VEPH-ASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 463 --~~~p-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
...+ ....+..+...+... ..+.++...++... ..|+ ...+..+...+...|++++|...++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1112 223344344333332 33455555555553 2233 446677779999999999999999999875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=120.71 Aligned_cols=168 Identities=8% Similarity=-0.048 Sum_probs=100.0
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 046956 377 AKCGNMDRAAELFETMP-----------NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSH 444 (574)
Q Consensus 377 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 444 (574)
...|++++|++.+++.. ..+...+..+...+...|++++|+..|+++.+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45566666666665543 223455666666666666666666666666653 33 33466666666666
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
.|++++|...|+++.+. .+.+...+..+..+|.+.|++++ ++.|+++ ...| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666652 23345566666666666666666 6666655 3333 345556666666666666666666
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
|+++++++|++..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-11 Score=96.79 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=104.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 515 (574)
|...+...|++++|+..++.... ..+.+...+..+...|.+.|++++|++.|+++ ...| +...|..+...+...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 45567788999999999998875 22223456678999999999999999999988 5555 57788888999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH-HHHHHhCCC
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV-RSKMKERGL 565 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~ 565 (574)
+++|+..|+++++++|+++.++..++.+|...|++++|.+. +++..+..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999887765 577776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=100.47 Aligned_cols=173 Identities=9% Similarity=-0.057 Sum_probs=137.9
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcC
Q 046956 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463 (574)
Q Consensus 385 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 463 (574)
....+......+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 334444444445566777888888999999999999999884 554 568888999999999999999999988753
Q ss_pred CCCcHHHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHH
Q 046956 464 IVPSPEHYA-CMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN--AGSYV 538 (574)
Q Consensus 464 ~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 538 (574)
.|+..... .....+...|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..++.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 44543332 3334467778888888888877 4445 56778888899999999999999999999999998 88999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 046956 539 LLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.|+.++...|+.++|...+++...
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-09 Score=91.58 Aligned_cols=162 Identities=10% Similarity=-0.036 Sum_probs=132.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhHhhcCCCCcHHH
Q 046956 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG----LVEDGWRFFEAMQNVYAIVPSPEH 470 (574)
Q Consensus 395 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 470 (574)
.++..+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|..+|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 466777788888888899999999999988865 55677777777777 6 899999999998763 35677
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHH
Q 046956 471 YACMVDLLGR----TGHLKSAYELLNSM-PVEPH---ASAWGALLGACKL----YSDIELGELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 471 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 538 (574)
+..|...|.. .+++++|++.|++. ...|. ...+..+...|.. .+++++|+..++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7888888877 88999999999888 33443 6778888888887 78999999999999988 77788999
Q ss_pred HHHHHHHhc-C-----CchHHHHHHHHHHhCCC
Q 046956 539 LLSNIYATA-D-----RWLDVCLVRSKMKERGL 565 (574)
Q Consensus 539 ~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 565 (574)
.|+.+|... | ++++|..++++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998764 3 89999999999888764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-09 Score=85.70 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56677788888888999999888888753 335567778888888889999999999988863 344567788888889
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 479 GRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999988877 2233 56677788888999999999999999999988863
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-08 Score=92.42 Aligned_cols=240 Identities=9% Similarity=0.017 Sum_probs=151.4
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCH
Q 046956 303 SGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNM 382 (574)
Q Consensus 303 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 382 (574)
+-..-.|++..++.-...+. .........-..+++...|+.+.. ....+... .+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~-a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGK-VLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHH-HHHHHHH-HHTTT--
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHH-HHHHHHH-Hhccc--
Confidence 44556678887777333321 122233334455677767766531 11111111 2333333 33322
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 046956 383 DRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAM 458 (574)
Q Consensus 383 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 458 (574)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666676655 24555566777888888888888888888776543223 347777888888888888888888888
Q ss_pred HhhcCCCC-----cHHHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 459 QNVYAIVP-----SPEHYACMVDL--LGRTG--HLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 459 ~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
.+. .| +..+...++.+ ....| ++++|..+|+++ ...|+......++.++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 753 45 24455555555 33334 888888888888 3345533333444477888888888888887776
Q ss_pred h----------CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 529 L----------EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 529 ~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
. +|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 5 47788888787777777786 77888888877553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-09 Score=111.09 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=121.6
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 046956 379 CGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRF 454 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 454 (574)
.|++++|.+.|++..+ .+...|..+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999988874 35678889999999999999999999999884 454 56888899999999999999999
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 046956 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLY---SDIELGELVANRLFEL 529 (574)
Q Consensus 455 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 529 (574)
++++.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 3445788889999999999999999999887 3344 466778888888888 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 046956 530 EPQNAGSYVLLS 541 (574)
Q Consensus 530 ~p~~~~~~~~l~ 541 (574)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-09 Score=85.39 Aligned_cols=114 Identities=8% Similarity=0.040 Sum_probs=81.2
Q ss_pred CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 046956 428 LTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWG 504 (574)
Q Consensus 428 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 504 (574)
+.|+.. .+......+.+.|++++|+..|+++++ ..+.+...|..++.+|.+.|++++|++.++++ ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 445443 666677777777777777777777775 33445667777777777777777777777766 3334 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
.+..++...|++++|+..|+++++++|+++.++..|+.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777778888888888888888888888888777777654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-09 Score=92.38 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=99.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR 480 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 480 (574)
.+..+|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+++.+. .+.+...+..+..+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3888999999999999999999984 554 568899999999999999999999999973 44567888889888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 481 TGH--LKSAYELLNSMPVEPHA--SAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 481 ~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
.|. .+.+...++... .|++ ..+.....++...|++++|+..|+++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 455666776663 3333 344455667778899999999999999999973
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-09 Score=92.32 Aligned_cols=156 Identities=8% Similarity=-0.014 Sum_probs=96.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH-Hh
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL-LG 479 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 479 (574)
.....+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++++... .|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 3344445555555555555554442 232 335555555555556666666555555432 1232222221111 11
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCchHHHH
Q 046956 480 RTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN--AGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
..+...+|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+. +.++..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 112222355556555 3345 46777788888999999999999999999999875 5689999999999999999999
Q ss_pred HHHHHHh
Q 046956 556 VRSKMKE 562 (574)
Q Consensus 556 ~~~~~~~ 562 (574)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=113.93 Aligned_cols=152 Identities=9% Similarity=-0.024 Sum_probs=134.0
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 408 SIHGHGRQAVSLFDRML--------SEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~--------~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
...|++++|++.+++.. + ..| +...+..+..++...|++++|...|+++.+ ..+.+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHH
Confidence 67899999999999998 4 344 456888899999999999999999999997 3445678999999999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 479 GRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
...|++++|++.|+++ ...| +...+..+..++...|++++ +..|+++++++|+++.++..++.+|...|++++|...
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999988 4455 46678888899999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 046956 557 RSKMKERG 564 (574)
Q Consensus 557 ~~~~~~~~ 564 (574)
++++.+.+
T Consensus 557 ~~~al~l~ 564 (681)
T 2pzi_A 557 LDEVPPTS 564 (681)
T ss_dssp HHTSCTTS
T ss_pred HHhhcccC
Confidence 98776544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-09 Score=88.20 Aligned_cols=97 Identities=6% Similarity=-0.052 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...+..+...+.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 466777788888888888888888887 4445 56778888888999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 046956 546 TADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~~~ 564 (574)
..|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999888755
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.1e-09 Score=105.99 Aligned_cols=150 Identities=16% Similarity=0.039 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 489 (574)
|++++|+..+++..+. .|+ ...+..+...+...|++++|.+.++++.+ ..+.+...+..++.+|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555555542 232 34555555555555666666666655554 222334555555555555666666655
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc---CCchHHHHHHHHHHhCC
Q 046956 490 LLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA---DRWLDVCLVRSKMKERG 564 (574)
Q Consensus 490 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 564 (574)
.++++ ...| +...+..+...+...|++++|++.++++++.+|+++.++..++.++... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 55554 2222 3445555555555556666666666666555555555555566555555 55555555555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.3e-09 Score=90.86 Aligned_cols=160 Identities=14% Similarity=0.045 Sum_probs=118.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCcHHHHHHHHHHhHhhcC
Q 046956 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE-VAFTI----------------VLTACSHVGLVEDGWRFFEAMQNVYA 463 (574)
Q Consensus 401 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~ 463 (574)
......+...|++++|+..|++.++ ..|+. ..+.. +..++.+.|++++|...|+++.+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 3344556677777777777777776 34543 35555 888999999999999999999973
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCchhHHH
Q 046956 464 IVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSD--IELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 464 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
.+.+...+..++.++...|++++|++.|+++ ...| +...+..+...+...|+ .+.+...++++....|. ...+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 4456789999999999999999999999988 4556 46678888777765543 44556666665433322 235667
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 540 LSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 540 l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
++..+...|++++|...|++..+..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 78889999999999999999987654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-07 Score=87.23 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CcchHHHHHHHHHHhCCCCChhhHHHHHHHHh----HhcCCHHH
Q 046956 311 PDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG--NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMN----AKCGNMDR 384 (574)
Q Consensus 311 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~ 384 (574)
.++|+.+++.++..+ +-+...|+.-...+...| +++++...++.+...+++.... ++.-...+ ...+
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a--W~~R~~iL~~~~~~l~---- 121 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI--WNYRQLIIGQIMELNN---- 121 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH--HHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH--HHHHHHHHHHHHHhcc----
Confidence 356777777666542 223334444444555555 5666666666666555444432 32222222 2220
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHhhc
Q 046956 385 AAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE--DGWRFFEAMQNVY 462 (574)
Q Consensus 385 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~ 462 (574)
..+++++++.+++++.+.. +-+..+|..-...+.+.|.++ ++++.++++.+.
T Consensus 122 ------------------------~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~- 175 (306)
T 3dra_A 122 ------------------------NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT- 175 (306)
T ss_dssp ------------------------TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-
T ss_pred ------------------------ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-
Confidence 0034444444554444421 223334443333334444444 444444444442
Q ss_pred CCCCcHHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhC---
Q 046956 463 AIVPSPEHYACMVDLLGRTGH------LKSAYELLNSM-PVEP-HASAWGALLGACKLYSDI-ELGELVANRLFELE--- 530 (574)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~--- 530 (574)
.+-|-..|+.-..++.+.|. ++++++.++++ ...| |...|+.+...+.+.|+. +....+.+++++++
T Consensus 176 -d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 176 -DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp -CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred -CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 22233444443333333333 44455444443 2222 344454444444444442 22333444444443
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
|.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.5e-09 Score=95.05 Aligned_cols=135 Identities=10% Similarity=-0.050 Sum_probs=115.6
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 046956 430 PD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALL 507 (574)
Q Consensus 430 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 507 (574)
|+ ...+..+...+...|++++|...|+++.+ ..+.+...+..++.++.+.|++++|...++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 44 45777888889999999999999999997 34456788999999999999999999999998 4567765444433
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 508 -GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 508 -~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
..+...++.+.|+..++++++.+|+++.++..|+.+|...|++++|...++++.+....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 44677888899999999999999999999999999999999999999999999886643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-09 Score=96.56 Aligned_cols=218 Identities=12% Similarity=0.023 Sum_probs=151.2
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHH
Q 046956 307 QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ-VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRA 385 (574)
Q Consensus 307 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 385 (574)
..|++++|.+++++..+... .. +.. .++++.|...+. ..+..|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~----------------~a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYA----------------KAAVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHH----------------HHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHH----------------HHHHHHHHcCCHHHH
Confidence 35678889998888765311 10 111 355666555444 345567778888888
Q ss_pred HHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCcHHH
Q 046956 386 AELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSE----GLTPD--EVAFTIVLTACSHVGLVED 450 (574)
Q Consensus 386 ~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~ 450 (574)
.+.|.+..+ .+ ..+|+.+...|...|++++|+..|++.++. | .+. ..++..+...|.. |++++
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHH
Confidence 888776552 11 347888888999999999999999987652 2 222 2477888888888 99999
Q ss_pred HHHHHHHhHhhcCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHH
Q 046956 451 GWRFFEAMQNVYAIVP----SPEHYACMVDLLGRTGHLKSAYELLNSM-P---VEPH----ASAWGALLGACKLYSDIEL 518 (574)
Q Consensus 451 a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~ 518 (574)
|+..|++......-.. ...++..+..+|.+.|++++|++.|+++ . ..++ ...+..+...+...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998876421111 1467888999999999999999999887 1 1122 2245555667778899999
Q ss_pred HHHHHHHHHhhCCCCchh-----HHHHHHHHHhcCCchHHHH
Q 046956 519 GELVANRLFELEPQNAGS-----YVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 519 a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 555 (574)
|+..+++++ +.|..... ...++..+ ..|+.+.+..
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999 98875532 44555554 5677666555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-09 Score=87.38 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=47.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+...|++++|...|+++.. ..+.+...|..+..+|...|++++|++.|+++ ...| +...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444444445555555555555555544 22223444444555555555555555555444 2222 2334444444455
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 512 LYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
..|++++|+..+++++++.|+++..
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 5555555555555555555544443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-08 Score=87.53 Aligned_cols=131 Identities=9% Similarity=-0.097 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++.+. .+.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34556677788888888888888776 3567778888888888888888888888888863 34456778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-----------------HASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
|...|++++|.+.|+++ ...| ....+..+..++...|++++|+..++++++..|++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 88888888888888776 2222 125667777888888888888888888888888763
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.1e-09 Score=81.72 Aligned_cols=102 Identities=10% Similarity=0.084 Sum_probs=91.3
Q ss_pred CCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 464 IVPS-PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 464 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
+.|+ ...+...+..|.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 467888899999999999999999987 4455 577888889999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 541 SNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+.+|...|++++|.+.|++..+.++
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999987553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-08 Score=89.07 Aligned_cols=186 Identities=11% Similarity=-0.020 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC-hhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CCh----hHHH
Q 046956 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLS-RAHVIAALVDMNAKCGNMDRAAELFETMPN--RDV----VSYC 401 (574)
Q Consensus 329 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~ 401 (574)
+...+..+...+...|++++|...++.+.+..+... ....+..++.+|.+.|++++|+..|+++.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677788999999999999999998765433 223788899999999999999999999863 332 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHhhc
Q 046956 402 SMIKGLSI------------------HGHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGLVEDGWRFFEAMQNVY 462 (574)
Q Consensus 402 ~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 462 (574)
.+..++.. .|++++|+..|+++++. .|+.. ........ ..+.....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 56666654 57899999999999984 55543 33221110 00111111
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 463 AIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA----SAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
.....++..|.+.|++++|+..|+++ ...|+. ..+..+..++.+.|++++|+..++++....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678889999999999999987 334442 45777779999999999999999999988888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.8e-09 Score=86.95 Aligned_cols=157 Identities=12% Similarity=-0.003 Sum_probs=115.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA-CS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~ 443 (574)
....++..+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..+. .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 455677788888999999999998884 45678888888899999999999999887764 3444333222211 11
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH---ASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a 519 (574)
..+...+|...++++.+ ..+.+...+..+..++...|++++|.+.|+++ ...|+ ...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22223346788888876 33445788888999999999999999999887 55554 45778888889999999999
Q ss_pred HHHHHHHHh
Q 046956 520 ELVANRLFE 528 (574)
Q Consensus 520 ~~~~~~~~~ 528 (574)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-08 Score=82.98 Aligned_cols=126 Identities=6% Similarity=-0.019 Sum_probs=94.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|.+.+++. ...| +...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677777777777777777652 3345667777777777788888887777766 2233 4667777788888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCchHHHHHHHHHH
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNI--YATADRWLDVCLVRSKMK 561 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 561 (574)
..|++++|+..++++++..|.++..+..+..+ +...|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999999988887554444 788899999999887664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-07 Score=84.60 Aligned_cols=161 Identities=11% Similarity=-0.053 Sum_probs=120.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHH
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEG-LTPDEV----AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYA 472 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 472 (574)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999888742 122211 2334666677788999999999998873112222 33688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhH
Q 046956 473 CMVDLLGRTGHLKSAYELLNSMP-------VE-PH-ASAWGALLGACKLYSDIELGELVANRLFELEPQN------AGSY 537 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 537 (574)
.++.+|...|++++|.+.++++- .. +. ..++..+...|...|++++|+..+++++++.+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998887761 11 11 2367778899999999999999999999874332 6689
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHHh
Q 046956 538 VLLSNIYATADR-WLDVCLVRSKMKE 562 (574)
Q Consensus 538 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 562 (574)
..++.+|...|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999999988763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.1e-08 Score=84.46 Aligned_cols=130 Identities=11% Similarity=-0.009 Sum_probs=112.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL 447 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 447 (574)
.+..++..+...|++++|.+.|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455678888999999999999999998899999999999999999999999999999853 3455689999999999999
Q ss_pred HHHHHHHHHHhHhhcCCCCc----------------HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 046956 448 VEDGWRFFEAMQNVYAIVPS----------------PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHA 500 (574)
Q Consensus 448 ~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 500 (574)
+++|...|+++.+. .+.+ ...+..++.+|...|++++|.+.|+++ ...|+.
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999873 2222 378889999999999999999999987 556654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.88 E-value=6.7e-07 Score=88.73 Aligned_cols=367 Identities=10% Similarity=-0.013 Sum_probs=218.1
Q ss_pred hCC-CchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC-hHHH
Q 046956 113 QNS-RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKE-ISCA 190 (574)
Q Consensus 113 ~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 190 (574)
+.| +++.|..+|+.+... -|. |+++.+..+|++.+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888877664 222 8999999999998874 4688888888877766653 3445
Q ss_pred HHHHccCCC------CChhhHHHHHHHHH----hcCChHHHHHHHhhcCCCCcchHHHHHHHHHc---cCChHHHHHHHh
Q 046956 191 RKVFDEMPE------RNVVSWTAMIVGYA----SVGDLVEAKTVFDLMPERSNVSWNALIGGLVK---IGDLRSARQLFD 257 (574)
Q Consensus 191 ~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 257 (574)
..+|+.... .+...|...+.-+. ..|+.+.+.++|++...........+-..|.. ......+..+..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 555655431 35567777776543 24567888888888765222222222222211 111112222221
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----CCHhHHHHHHHHHHhCCC-------chHHHHHHHHHHHCCC
Q 046956 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPD----RDVVAWSALISGYAQNGQ-------PDEAVKIFSDMCSKNV 326 (574)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~~~ 326 (574)
+. .+.+..|..+++.+.. .+...|...+..-...+. .+.+..+|++++.. .
T Consensus 148 ~~-----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~ 209 (493)
T 2uy1_A 148 DT-----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-F 209 (493)
T ss_dssp HH-----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HH-----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-C
Confidence 11 0122222322222111 134456555544332211 24567788888775 3
Q ss_pred CCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHH-HHHHHhhCC------------
Q 046956 327 QPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDR-AAELFETMP------------ 393 (574)
Q Consensus 327 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------------ 393 (574)
+.+...|...+.-+...|+.+.|..+++..... +.. .. ++.. |+...+.++ ...+.+...
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-~~-l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-MF-LSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-SH-HHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-HH-HHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 445777777777788888899999999998887 332 22 3322 222111111 111222111
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHhhcCCCCcHHHHH
Q 046956 394 NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSH-VGLVEDGWRFFEAMQNVYAIVPSPEHYA 472 (574)
Q Consensus 394 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 472 (574)
......|...+....+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.+ +.++..+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHH
Confidence 011245777777777788899999999998 32 12344455433332222 346999999999999853 33455667
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 473 CMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
..++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888889999999999999983 3567788888888889999999999998875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-08 Score=79.39 Aligned_cols=115 Identities=9% Similarity=0.037 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGAC 510 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 510 (574)
..+..+...+...|++++|...++++.+ ..+.+...+..++.++...|++++|.+.++++ ...| +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566666667777777777777777665 23335566667777777777777777777665 2233 466777777888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
...|++++|+..++++++.+|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999988887764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-08 Score=78.48 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGAC 510 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 510 (574)
..+..+...+...|++++|...++++... .+.+...+..++..+...|++++|.+.+++. ...| +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666677777778888888888877763 3345677777888888888888888888776 2333 466777788889
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCch
Q 046956 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWL 551 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 551 (574)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988763
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-07 Score=87.54 Aligned_cols=162 Identities=11% Similarity=-0.076 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHhHhhcC--CCCc--H
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDE------VAFTIVLTACSHVGLVEDGWRFFEAMQNVYA--IVPS--P 468 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 468 (574)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...++++..... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888999999888887774321 21 1234455567788899999999988875311 1111 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------C
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSMP----VEPH-----ASAWGALLGACKLYSDIELGELVANRLFELEPQ------N 533 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~ 533 (574)
.+++.++..|...|++++|.+.++++- ..|+ ..++..+...|...|++++|+..+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578888999999999999999887761 1222 257778888999999999999999999887432 1
Q ss_pred chhHHHHHHHHHhcCCchHH-HHHHHHHH
Q 046956 534 AGSYVLLSNIYATADRWLDV-CLVRSKMK 561 (574)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 561 (574)
..++..++.+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56789999999999999999 77777664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.4e-08 Score=76.61 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVE-PHASAWGALLGAC 510 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 510 (574)
..+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|...++++ ... .+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 46666777777777888888877777763 3345667777777888888888888887776 222 3566777788888
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 511 KLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 511 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999988877654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-06 Score=78.20 Aligned_cols=234 Identities=8% Similarity=-0.004 Sum_probs=161.2
Q ss_pred HHHHhcCCh-HHHHHHHhhCCC---CCHhHHHHHHHHHHhCC--CchHHHHHHHHHHHCCCCCCHHHHHHHHHHH----h
Q 046956 272 DGYAKVGDM-TSARSLFEAAPD---RDVVAWSALISGYAQNG--QPDEAVKIFSDMCSKNVQPDEFILVSLMSAC----S 341 (574)
Q Consensus 272 ~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~ 341 (574)
.+..+.|.+ ++|+++++.+.. .+..+|+.-...+...| ++++++..++.+...+.+ +..+|+.-...+ .
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 333445554 789999988764 35678998888888888 999999999999886422 344454433333 2
Q ss_pred cc---CCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChH--HH
Q 046956 342 QV---GNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGR--QA 416 (574)
Q Consensus 342 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a 416 (574)
.. ++++++..+++.+.+..+ .+..+|+.-.-.+...|.++ ++
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~p---------------------------------kny~aW~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDP---------------------------------KNHHVWSYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCT---------------------------------TCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred hccccCCHHHHHHHHHHHHHhCC---------------------------------CCHHHHHHHHHHHHHhcccChHHH
Confidence 22 344444444444443322 34455666666666666666 88
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH-HHH
Q 046956 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGL------VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS-AYE 489 (574)
Q Consensus 417 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~ 489 (574)
++.++++++.. .-|...|+.-...+...|. ++++++.+++++. ..+-|...|+.+...+.+.|+..+ +..
T Consensus 166 L~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 166 LSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 88888888854 3355566665555566665 8889999988887 445677888888888888887544 455
Q ss_pred HHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCchhHHHHHH
Q 046956 490 LLNSM-PV----EPHASAWGALLGACKLYSDIELGELVANRLFE-LEPQNAGSYVLLSN 542 (574)
Q Consensus 490 ~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 542 (574)
+.+++ .. ..+...+..+...+.+.|+.++|+++++.+.+ .+|.....|...+.
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 66665 21 23567788888888899999999999999987 69988887776554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.9e-09 Score=87.03 Aligned_cols=128 Identities=5% Similarity=0.077 Sum_probs=82.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH-HhhcCCH-
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL-LGRTGHL- 484 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 484 (574)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+. .+.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 344567777777777777642 334457777777777778888888877777763 23355666667766 6677776
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 485 -KSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 485 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 7777777766 3333 355666666777777777777777777777777765544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-09 Score=96.28 Aligned_cols=188 Identities=11% Similarity=-0.024 Sum_probs=126.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 443 (574)
.+..++..+.+.|++++|...|++.. . .+...|..+..+|...|++++|+..+++.++. .|+ ...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 56677777888888888888887765 2 36677888888888889999999988888874 444 457888888888
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSP-EHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELV 522 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 522 (574)
..|++++|...|+++.+. .|+. ..+...+....+.+....... ........+......+. .+ ..|++++|++.
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHHHH
Confidence 899999999988887753 1211 111111111111111111111 12222223333333332 22 36889999999
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 046956 523 ANRLFELEPQNAGSYVLLSNIYATA-DRWLDVCLVRSKMKER 563 (574)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 563 (574)
++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999888888888877776 7789999999888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=94.11 Aligned_cols=196 Identities=9% Similarity=-0.018 Sum_probs=147.7
Q ss_pred cCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 046956 343 VGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDR 422 (574)
Q Consensus 343 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 422 (574)
.|++++|..++++..+..... . +...++++.|...|.. ....|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----~-------~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----F-------MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----S-------SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----c-------cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 466778888888776543210 0 1114778888877654 46678889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCC--CC--cHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 046956 423 MLSE----GLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAI--VP--SPEHYACMVDLLGRTGHLKSAYELLNS 493 (574)
Q Consensus 423 m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (574)
..+. |-.+. ..+|..+...|...|++++|+..|++..+.+.- .+ ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7753 21111 247888889999999999999999988764211 11 14678889999998 999999999988
Q ss_pred C-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCchHHHHHHHH
Q 046956 494 M-PV---EPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNA------GSYVLLSNIYATADRWLDVCLVRSK 559 (574)
Q Consensus 494 ~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (574)
. .. ..+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 11 111 45677788999999999999999999999866543 3677888889999999999999999
Q ss_pred HH
Q 046956 560 MK 561 (574)
Q Consensus 560 ~~ 561 (574)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=81.79 Aligned_cols=101 Identities=9% Similarity=-0.065 Sum_probs=46.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+.+.|++++|...|+++.. ..+.+...|..+..+|...|++++|++.|+++ ...| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 333444444555555555555555543 22223444444444555555555555554444 1222 2333344444444
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 512 LYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
..|++++|+..+++++++.|+++..
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcch
Confidence 4555555555555555554444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.6e-08 Score=93.01 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...|..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467778888888888888888888877 3344 56778888899999999999999999999999999999999999999
Q ss_pred hcCCchHH-HHHHHHHH
Q 046956 546 TADRWLDV-CLVRSKMK 561 (574)
Q Consensus 546 ~~g~~~~a-~~~~~~~~ 561 (574)
..|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 45666664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=91.52 Aligned_cols=124 Identities=10% Similarity=-0.097 Sum_probs=62.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHA----SAWGALLGACKLY 513 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 513 (574)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 344455555666666665555431 232224444444555566666666666544322222 2344444555556
Q ss_pred CCHHHHHHHHHHHHhhC--CC-CchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 514 SDIELGELVANRLFELE--PQ-NAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
|++++|+..|+++.... |. .+.+...++.++.+.|+.++|...|+++...+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666666666555322 33 33355555555666666666666666555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-08 Score=82.55 Aligned_cols=108 Identities=6% Similarity=-0.049 Sum_probs=89.8
Q ss_pred HHHHhHhhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 454 FFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 454 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.++++.. ..| +...+..++..+...|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++
T Consensus 9 ~~~~al~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNE---ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTT---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHc---CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455543 333 4567778888999999999999999887 3444 67778888889999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
|+++.++..++.+|...|++++|...+++..+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999887654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.9e-08 Score=77.30 Aligned_cols=107 Identities=8% Similarity=-0.059 Sum_probs=50.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+.+.|++++|...|++..+. .+.+...|..++.++.+.|++++|++.++++ ...| +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444444555555555555555555542 2223444445555555555555555555444 2222 2334444444455
Q ss_pred hcCCHHHHHHHHHHHHhhC------CCCchhHHHHHH
Q 046956 512 LYSDIELGELVANRLFELE------PQNAGSYVLLSN 542 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 542 (574)
..|++++|+..++++++++ |+++.+...+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 5555555555555555554 444444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-07 Score=79.89 Aligned_cols=159 Identities=9% Similarity=-0.080 Sum_probs=115.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHG----HGRQAVSLFDRMLSEGLTPDEVAFTIVLTAC 442 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 442 (574)
.+..+...|...+++++|.++|++..+ .+...+..+...|.. + ++++|+.+|++..+.| +...+..|...|
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y 95 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVL 95 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 566677777777777777777776653 456667777777766 5 7888888888887754 556677777777
Q ss_pred hc----cCcHHHHHHHHHHhHhhcCCC-CcHHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 046956 443 SH----VGLVEDGWRFFEAMQNVYAIV-PSPEHYACMVDLLGR----TGHLKSAYELLNSM-PVEPHASAWGALLGACKL 512 (574)
Q Consensus 443 ~~----~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 512 (574)
.. .+++++|..+|++..+. +.. .++..+..|...|.. .+++++|++.|++. ....+...+..+...|..
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 76 78899999999888753 221 126777888888887 78899999999887 322455566667777654
Q ss_pred c-C-----CHHHHHHHHHHHHhhCC
Q 046956 513 Y-S-----DIELGELVANRLFELEP 531 (574)
Q Consensus 513 ~-~-----~~~~a~~~~~~~~~~~p 531 (574)
. | ++++|+..++++.+...
T Consensus 175 g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 175 GEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3 3 89999999999888753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.9e-08 Score=74.34 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ--NAGSYVLLSNI 543 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 543 (574)
...+..++..+...|++++|...++++ ...| +...+..+...+...|++++|+..++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777788888888888888776 2233 5667778888899999999999999999999999 99999999999
Q ss_pred HHhc-CCchHHHHHHHHHHhCCCc
Q 046956 544 YATA-DRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 544 ~~~~-g~~~~a~~~~~~~~~~~~~ 566 (574)
+... |++++|.+.+++..+....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999999876653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.3e-08 Score=76.84 Aligned_cols=96 Identities=13% Similarity=-0.016 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATA 547 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (574)
.+..++..+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556777888999999999999887 4455 5777888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCCC
Q 046956 548 DRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 548 g~~~~a~~~~~~~~~~~~ 565 (574)
|++++|...+++..+.+.
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.9e-08 Score=80.22 Aligned_cols=99 Identities=6% Similarity=-0.080 Sum_probs=66.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+.+.|++++|...|+++.. ..+.+...|..+..+|...|++++|++.|+++ ...| ++..|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 555666666667777777777776665 23344566666777777777777777777666 3334 3556667777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCc
Q 046956 512 LYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
..|++++|+..|++++++.|+++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 78888888888888888777654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-06 Score=78.70 Aligned_cols=160 Identities=9% Similarity=-0.067 Sum_probs=121.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHH
Q 046956 370 AALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLT-PD----EVAF 435 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~ 435 (574)
...+..+...|++++|.+.+++..+ ++ ...+..+...+...|++++|+..+++..+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3446778889999999999988653 11 113334666777788999999999999984322 22 2368
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhc----CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHH
Q 046956 436 TIVLTACSHVGLVEDGWRFFEAMQNVY----AIVPS-PEHYACMVDLLGRTGHLKSAYELLNSM-------PVEPH-ASA 502 (574)
Q Consensus 436 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~ 502 (574)
+.+...|...|++++|..+++++.+.. +..+. ..++..++..|.+.|++++|.+.++++ ...+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 899999999999999999999988521 11122 357888999999999999999998876 11222 567
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 046956 503 WGALLGACKLYS-DIELGELVANRLFEL 529 (574)
Q Consensus 503 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 529 (574)
+..+..++...| ++++|+..+++++.+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888889999999 579999999999875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-07 Score=81.70 Aligned_cols=138 Identities=7% Similarity=-0.095 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc--HHHHHHHHHH
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS--PEHYACMVDL 477 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 477 (574)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 344566677788888888888777663 354445555556788888888888888765541 1221 2366778888
Q ss_pred HhhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 478 LGRTGHLKSAYELLNSMP---VEPH--ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+...|++++|++.|++.. ..|. ...+.....++.+.|+.++|...|+++...+|+ +.+...|..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 888999999998888872 1143 335666678888999999999999999999998 777766644
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=81.75 Aligned_cols=168 Identities=8% Similarity=-0.025 Sum_probs=98.5
Q ss_pred hHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046956 376 NAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGW 452 (574)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 452 (574)
....|+++++.+.++.... .....+..+...+...|++++|+..|++.++. .|+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~-------------- 77 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ-------------- 77 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------------
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------------
Confidence 3344555555555543321 12345555666666667777777777766663 2221100000
Q ss_pred HHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 453 RFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 453 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.+..-.. ......+..+..+|...|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++
T Consensus 78 -~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 78 -ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp -HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0000000 001356777788888888888888888776 3334 56678888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHH-HHHHHHHhCC
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVC-LVRSKMKERG 564 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~ 564 (574)
|+++.++..++.++...|+.+++. ..++.+...+
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999888877 5566655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.4e-08 Score=79.72 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 046956 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGA 509 (574)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 509 (574)
...+..+...+...|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|++.++++ ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 457888888999999999999999999873 3446788999999999999999999999987 4445 47788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+...|++++|+..++++++++|+++..+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999987665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-07 Score=75.07 Aligned_cols=99 Identities=6% Similarity=-0.158 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 046956 432 EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGA 509 (574)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 509 (574)
...+..+...+...|++++|...|+++... .+.+...+..++.++...|++++|...++++ ...| +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 345555555555555555555555555542 2223444555555555555555555555444 2222 23444444455
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC
Q 046956 510 CKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
+...|++++|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-07 Score=71.27 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=65.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACK 511 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 511 (574)
.+..+...+...|++++|...++++... .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4445555555666666666666666542 2334555555666666666666666666554 2223 3455666666677
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
..|++++|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777777666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=79.98 Aligned_cols=123 Identities=9% Similarity=0.048 Sum_probs=92.8
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGA-CKLYSDI-- 516 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~-- 516 (574)
+...|++++|...+++..+. .+.+...+..++..|...|++++|.+.|+++ ...| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45567888888888888763 3456678888888888888888888888877 3333 45666666677 6778887
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 517 ELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
++|+..++++++.+|+++.++..++.+|...|++++|...++++.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888888876643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-08 Score=76.65 Aligned_cols=92 Identities=4% Similarity=-0.035 Sum_probs=45.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHHHH
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAG-------SYVLLS 541 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 541 (574)
+..++..+.+.|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344445555555555555555444 2223 2344444555555555555555555555555444322 344455
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 046956 542 NIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 542 ~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.++...|++++|.+.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-07 Score=73.62 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...+..++..+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456777788888889999999888877 3344 56777888888888899999999999999999988888999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 046956 546 TADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~~~ 564 (574)
..|++++|...+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999998888877644
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=76.53 Aligned_cols=98 Identities=6% Similarity=-0.126 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
+...+..+...+.+.|++++|.+.|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3456667788888999999999999887 3344 5677778888889999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 046956 545 ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~ 564 (574)
...|++++|...+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998887644
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.4e-07 Score=82.36 Aligned_cols=162 Identities=8% Similarity=-0.066 Sum_probs=118.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN---RDV------VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGL---TPD--EV 433 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~ 433 (574)
.+...+..+...|++++|.+.++...+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778888999999888875431 111 2344456667788899999999999886321 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-----HHHHHHHHHHHhhcCCHHHHHHHHHhC-CC------CC-CH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-----PEHYACMVDLLGRTGHLKSAYELLNSM-PV------EP-HA 500 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 500 (574)
+++.+...|...|++++|...++++.+.....|+ ..++..++..|...|++++|.+.+++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998732111122 257888999999999999999999876 11 11 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 046956 501 SAWGALLGACKLYSDIELG-ELVANRLFEL 529 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 529 (574)
.++..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888999999999999 7889988875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-07 Score=71.31 Aligned_cols=99 Identities=9% Similarity=0.054 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
....+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567788899999999999999999987 3334 6777888889999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCCC
Q 046956 545 ATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...|++++|...+++..+.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999987654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=73.91 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=90.8
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 046956 465 VPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSN 542 (574)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (574)
+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|+++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678889999999999999999999987 4455 67788888899999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCC
Q 046956 543 IYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+|...|++++|...+++..+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999999887553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-07 Score=74.48 Aligned_cols=112 Identities=12% Similarity=-0.039 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 046956 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWG 504 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 504 (574)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|++.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345677777777788888888888887774 2344 566677777777778888887777765 3333 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
.+..++...|++++|+..++++++.+|+++.++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 66677777778888888888877777777777766666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.4e-07 Score=76.26 Aligned_cols=95 Identities=15% Similarity=-0.017 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
...|..+...+...|++++|+..|++.++.. +.+...|..+..++...|++++|+..++++.+. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456666666666677777777776666632 223446666666666667777777777666652 2334566666666
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 046956 477 LLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~ 494 (574)
+|...|++++|.+.|+++
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 666777777776666655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.6e-07 Score=78.46 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=35.9
Q ss_pred hcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHH
Q 046956 378 KCGNMDRAAE---LFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE----GLTPD-EVAFTIVLTACSHVGLVE 449 (574)
Q Consensus 378 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~ 449 (574)
..|++++|.+ .+.........++..+...+...|++++|...+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223344555555555555555555555554431 11111 123444444455555555
Q ss_pred HHHHHHHHhH
Q 046956 450 DGWRFFEAMQ 459 (574)
Q Consensus 450 ~a~~~~~~~~ 459 (574)
+|...+++..
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=75.42 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhH----HHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFEL-------EPQNAGSY----VLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.|..+..++.+.|++++|+..+++++++ +|+++.+| +..+.++...|++++|...|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666677777777777777777777777 78777777 7777788888888888877777765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-05 Score=78.66 Aligned_cols=313 Identities=10% Similarity=-0.062 Sum_probs=174.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcCC--CCchhHHHHHHHHHHhcCC-hHHHHHHHhhCC------CCCHhHHHHHHHHH
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEMP--ERNVVSYTTMIDGYAKVGD-MTSARSLFEAAP------DRDVVAWSALISGY 305 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~------~~~~~~~~~li~~~ 305 (574)
.|...+..+-. |+++.+..+|+... .|+...|...+....+.++ .+....+|+... ..+...|...+..+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~ 95 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE 95 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 45555554433 88999999998322 3788888888887777663 344555665433 23567787777665
Q ss_pred H----hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcc--------------hHHHHHHHHHHhCCCCChhh
Q 046956 306 A----QNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLD--------------LSNWVDSYLSRSHMDLSRAH 367 (574)
Q Consensus 306 ~----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------------~a~~~~~~~~~~~~~~~~~~ 367 (574)
. ..++.+.+..+|++.+.....--...|...... ....+.. .|..++..+...-...+..
T Consensus 96 ~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~- 173 (493)
T 2uy1_A 96 GKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK- 173 (493)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH-
T ss_pred HhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH-
Confidence 4 245678888999998874222122333333221 1111122 2233333333211111111
Q ss_pred HHHHHHHHhHhc--CC-----HHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 046956 368 VIAALVDMNAKC--GN-----MDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEV-AFT 436 (574)
Q Consensus 368 ~~~~l~~~~~~~--g~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 436 (574)
.+...+..-... |- .+.+..+|+++.. .+...|...+.-+...|+.++|..++++.+.. |... .+.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~ 250 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL 250 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH
Confidence 344444432221 11 3345667776652 35677888888888899999999999999986 5443 222
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhc---C-----C---CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHH
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVY---A-----I---VPSPEHYACMVDLLGRTGHLKSAYELLNSMPVE-PHASAWG 504 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~-----~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~ 504 (574)
.... +...+.. ++.+.+.+ . . ......|...+....+.|..+.|.++|+++... .+...|.
T Consensus 251 ~y~~-~~e~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i 323 (493)
T 2uy1_A 251 YYGL-VMDEEAV------YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFI 323 (493)
T ss_dssp HHHH-HTTCTHH------HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHh-hcchhHH------HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHH
Confidence 2111 1111111 22222110 0 0 011245666666666777888888888877211 2333443
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 505 ALLGACKL-YSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 505 ~l~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
........ .++.+.|..+++.+++..|+++..+...++.....|+.+.|+.+|+++
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32222222 336888888888888887887777666777777777777777777765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3.7e-07 Score=71.70 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 3333 57778888899999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCC
Q 046956 546 TADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 546 ~~g~~~~a~~~~~~~~~~~~ 565 (574)
..|++++|...++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.3e-07 Score=76.79 Aligned_cols=128 Identities=8% Similarity=0.021 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC-C----H
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVY---AIVP-SPEHYACMVDLLGRTGHLKSAYELLNSM-P---VEP-H----A 500 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~ 500 (574)
++..+...+...|++++|...+++..... +..+ ....+..+...+...|++++|.+.+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44555555555555555555555444310 1111 2344445555555555555555555443 0 011 1 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCc----hhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELE--PQNA----GSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
..+..+...+...|++++|+..++++++.. ..++ ..+..++.++...|++++|...+++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 223344445555555555555555555431 1111 123455555555555555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=8.4e-07 Score=73.84 Aligned_cols=129 Identities=7% Similarity=-0.072 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777778888888888888877742 334567777788888888888888888888763 34456777888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-HASAWGA--LLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
+...|++++|.+.++++ ...| +...+.. ....+...|++++|+..+++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888776 3333 3334433 334466778888888888876554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-06 Score=71.51 Aligned_cols=98 Identities=13% Similarity=0.023 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (574)
+...+..++..+...|++++|.+.|++. ...|+ ...+..+...+...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4556666667777777777777777665 44555 445555666667777777777777777777777777777777
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 046956 542 NIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 542 ~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.+|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777777777777777666543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.1e-06 Score=76.92 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=27.2
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+.++.++..|+++|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 56777888999999999999999999988864
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=4.5e-07 Score=71.88 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=88.9
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 466 PSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 466 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|+++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888899999999999999999987 3334 577788888999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCC
Q 046956 544 YATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+...|++++|...+++..+.+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHhCCHHHHHHHHHHHHhcCc
Confidence 9999999999999999887653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-05 Score=73.66 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHH---HhcCCchHHHHHHHHHHhCC
Q 046956 515 DIELGELVANRLFELEPQNAGSYVLLSNIY---ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~ 564 (574)
.++++++.+++++++.|++...+..++... ...|..+++...+.++++-+
T Consensus 253 ~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 253 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 355666666666666666655444443321 13455556666666665433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-07 Score=72.96 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=71.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH---HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 046956 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP---EHYACMVDLLGRTGHLKSAYELLNSM-PVEPH----ASAWGALL 507 (574)
Q Consensus 436 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 507 (574)
..+...+...|++++|...|+++.+. .+.+. ..+..++.++...|++++|.+.++++ ...|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34555677778888888888877763 22223 46666777777778888887777766 22332 44566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
.++...|++++|+..++++++..|+++........+-
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7777778888888888887777777776655554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.3e-07 Score=71.94 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=77.9
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 466 PSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 466 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
.+...+..++..+...|++++|...|+++ ...| +...+..+...+...|++++|+..++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677778888888888888888888776 3334 466777777888888888888888888888888888888888888
Q ss_pred HHhcCCchHHHHHHHHHHhCC
Q 046956 544 YATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~~~ 564 (574)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 888888888888888776543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=5.1e-07 Score=89.05 Aligned_cols=143 Identities=13% Similarity=0.024 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
...|..+...+.+.|++++|+..|++.++. .|+...+ . .+... +... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 345666667777777777777777776652 2221000 0 00000 0000 11456777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHH
Q 046956 477 LLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVC 554 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 554 (574)
+|.+.|++++|+..++++ ...| +...+..+..+|...|++++|+..|+++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777 3334 56778888889999999999999999999999999999999999999999888776
Q ss_pred H-HHHHHH
Q 046956 555 L-VRSKMK 561 (574)
Q Consensus 555 ~-~~~~~~ 561 (574)
+ .+++|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 445443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.7e-05 Score=69.46 Aligned_cols=231 Identities=10% Similarity=0.020 Sum_probs=150.7
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhc-C-CH
Q 046956 306 AQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG-NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKC-G-NM 382 (574)
Q Consensus 306 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 382 (574)
...+..++|++++++++..+ +-+...|+.--..+...| .++++..+++.+...+++... +++.-...+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~--aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ--VWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH--HHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHhcCCCh
Confidence 33444556777777776653 223444555455555555 467777777777766554443 455555555555 5 77
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc----
Q 046956 383 DRAAELFETMPN---RDVVSYCSMIKGLSIHGHGR--------QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGL---- 447 (574)
Q Consensus 383 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~---- 447 (574)
++++++++.+.+ .|..+|+.-.-.+...|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 888888888774 35566766655555555555 8999999999853 3455677777777777665
Q ss_pred ---HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH--------------------HHHHHHHHhC-CC-------
Q 046956 448 ---VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL--------------------KSAYELLNSM-PV------- 496 (574)
Q Consensus 448 ---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------- 496 (574)
++++++.+++++. ..+-|...|+.+...+.+.|+. .+..+....+ ..
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7889999988887 4455678888877777776653 3444444444 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCCchhHHHHHH
Q 046956 497 EPHASAWGALLGACKLYSDIELGELVANRLF-ELEPQNAGSYVLLSN 542 (574)
Q Consensus 497 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 542 (574)
.+....+..+...|...|+.++|.++++.+. +.+|-....+...+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2466777888899999999999999999987 558876666655544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-07 Score=71.17 Aligned_cols=110 Identities=12% Similarity=0.009 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVD 476 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 476 (574)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|+..++++++. .|+ ...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH--
Confidence 4445555555555555555555555552 332 334555555555555555555555555432 110 0001101
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
..++..+..++...|++++|++.|+++++..|+ +.....
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 121 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKK 121 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHH
Confidence 124555666777788888888888888877765 444333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-06 Score=68.41 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=59.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHH
Q 046956 473 CMVDLLGRTGHLKSAYELLNSM-PVEPHA----SAWGALLGACKLYSDIELGELVANRLFELEPQN---AGSYVLLSNIY 544 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 544 (574)
.++..+...|++++|.+.|+++ ...|+. ..+..+..++...|++++|+..++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455666677777777777665 222321 355555566677777777777777777777776 55677777777
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 046956 545 ATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~ 564 (574)
...|++++|...++++.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.7e-07 Score=71.32 Aligned_cols=110 Identities=6% Similarity=-0.042 Sum_probs=65.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV----EPH----ASAWG 504 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 504 (574)
.+..+...+...|++++|...++++... .+.+...+..++..+...|++++|...++++ .. .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555555555555555555542 2334445555555555555555555555554 11 112 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 505 ALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 505 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
.+...+...|++++|...++++++..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 667778888888888888888888877 46666666665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.5e-05 Score=71.03 Aligned_cols=230 Identities=12% Similarity=0.058 Sum_probs=149.6
Q ss_pred hCCCch-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC----------cchHHHHHHHHHHhCCCCChhhHHHHHHH
Q 046956 307 QNGQPD-EAVKIFSDMCSKNVQPD-EFILVSLMSACSQVGN----------LDLSNWVDSYLSRSHMDLSRAHVIAALVD 374 (574)
Q Consensus 307 ~~~~~~-~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 374 (574)
+.|.++ +|+.+++.+... .|+ ...|+.--..+...+. ++++..+++.+...+++... +++.-..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~--aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--TWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH--HHHHHHH
Confidence 444444 567777776654 333 2333332222222222 45666777777766554443 5665566
Q ss_pred HhHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 046956 375 MNAKCG--NMDRAAELFETMPN---RDVVSYCSMIKGLSIHGH-GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV--- 445 (574)
Q Consensus 375 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--- 445 (574)
++.+.| .++++..+++.+.+ .|..+|+.-.-.+...|. ++++++.++++++.. +-|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 666666 47888888888773 566788877777777787 588999999998853 33445665555444433
Q ss_pred -----------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 046956 446 -----------GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT-----------GHLKSAYELLNSM-PVEPHASA 502 (574)
Q Consensus 446 -----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~ 502 (574)
+.++++++.+..+.. -.+-|...|+.+-..+.+. +.++++++.++++ ...|+. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 457889999998886 4455677787666666555 4578888888887 556664 3
Q ss_pred HHHHHH-----HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 046956 503 WGALLG-----ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIY 544 (574)
Q Consensus 503 ~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (574)
|..+.. .....|..++....+.++.+++|....-|..+..-+
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 332221 222467888999999999999999888888776554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.4e-07 Score=89.89 Aligned_cols=119 Identities=6% Similarity=-0.030 Sum_probs=95.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSD 515 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 515 (574)
+...+.+.|++++|.+.++++.+. .+.+...|..++.+|.+.|++++|++.++++ ...| +...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566778888888888888863 3445778888888888888898888888877 4445 46778888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCchHHHHHHH
Q 046956 516 IELGELVANRLFELEPQNAGSYVLLSNI--YATADRWLDVCLVRS 558 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 558 (574)
+++|++.++++++++|+++.++..++.+ +...|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888 888999999999987
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.2e-07 Score=74.94 Aligned_cols=113 Identities=13% Similarity=-0.059 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcC----------------CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYA----------------IVPSPEHYACMVDLLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (574)
..+......+.+.|++++|+..|.+...... .+.+...|..+..+|.+.|++++|+..++++ .
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4677778888899999999999998876300 1122356777777888888888888877776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-hhHHHHHHHHH
Q 046956 496 VEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNA-GSYVLLSNIYA 545 (574)
Q Consensus 496 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 545 (574)
..| +...|..+..++...|++++|+..++++++++|+++ .+...+..+..
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344 456677777778888888888888888888888777 55555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-07 Score=80.90 Aligned_cols=97 Identities=8% Similarity=-0.118 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-H----------------ASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
...+..++..+...|++++|.+.|+++ ...| + ...+..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344556666777777777777777665 2111 1 267777888999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 530 EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+|+++.++..++.+|...|++++|...+++..+..
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999988654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-07 Score=86.50 Aligned_cols=152 Identities=9% Similarity=-0.085 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
...+..+...+...|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 44567777778888888888888888877 3455432 233344444432221 136788899
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH-HHhcCCchHH
Q 046956 477 LLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNI-YATADRWLDV 553 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a 553 (574)
+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..|+++++++|+++.++..|..+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4444 577888888999999999999999999999999999999999888 4456778888
Q ss_pred HHHHHHHHhCCCccC
Q 046956 554 CLVRSKMKERGLRKI 568 (574)
Q Consensus 554 ~~~~~~~~~~~~~~~ 568 (574)
...+++|.+......
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 889998877665433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-05 Score=81.56 Aligned_cols=170 Identities=7% Similarity=-0.038 Sum_probs=133.4
Q ss_pred CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 380 GNMDRAAELFETMPN--R-DVVSYCSMIKGLSIHGH----------GRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVG 446 (574)
Q Consensus 380 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 446 (574)
...++|.+.++.+.. | +..+|+.--..+...|+ +++++..++++.+.. +-+..+|..-...+.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 344566777777662 3 44567666666666666 899999999999853 334558888777888888
Q ss_pred --cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 046956 447 --LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG-HLKSAYELLNSM-PVEP-HASAWGALLGACKLY-------- 513 (574)
Q Consensus 447 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-------- 513 (574)
+++++++.++++.+ ..+-+..+|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999998 44557788888888888888 899999999888 5555 677888877766553
Q ss_pred ------CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchH
Q 046956 514 ------SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552 (574)
Q Consensus 514 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (574)
+.++++++.++++++++|++..+|..+.+++...|++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=67.58 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=64.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP---HASAWGALLGA 509 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 509 (574)
.+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++++ ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4555555666666666666666666652 2334556666666677777777777766665 2233 35566666677
Q ss_pred HHhc-CCHHHHHHHHHHHHhhCCCCc
Q 046956 510 CKLY-SDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 510 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 534 (574)
+... |++++|++.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 788888888888777777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.4e-07 Score=73.67 Aligned_cols=94 Identities=9% Similarity=-0.002 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--------CC--------CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhh
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSE--------GL--------TPDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNV 461 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~--------~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 461 (574)
.+......+.+.|++++|+..|.+.++. .. .|.. ..|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455555555666666666666665542 00 1221 24555555556666666666666665542
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 462 YAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 462 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
.+.+...|..++.+|...|++++|...|++.
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 2334455555666666666666666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-06 Score=80.83 Aligned_cols=128 Identities=8% Similarity=-0.062 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD----------------EVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
...|..+...|...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666677777777777776663 333 25677777777777777777777777776
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELG-ELVANRLFE 528 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 528 (574)
. .+.+...+..+..+|...|++++|++.|+++ ...| +...+..+...+...|++++| ...+++++.
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3445667777777777777777777777776 3344 355666666777777777777 445666554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-07 Score=72.46 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=59.5
Q ss_pred ccCcHHHHHHHHHHhHhhcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYA--IVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELG 519 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 519 (574)
..|++++|+..|+++.+. + .+.+...+..++.+|...|++++|++.|+++ ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 356777777777777752 2 1233466667777777777777777777766 3334 355566666777777777777
Q ss_pred HHHHHHHHhhCCCCchhHH
Q 046956 520 ELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~ 538 (574)
+..++++++..|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 7777777777777766543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.43 E-value=8.8e-07 Score=70.19 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN-------AGSYV 538 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 538 (574)
...+..++..+...|++++|...++++ ...| +...+..+...+...|++++|+..++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788899999999999999999987 3333 57778888899999999999999999999998776 88999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 539 LLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
.++.+|...|++++|...++++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999998754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=82.52 Aligned_cols=138 Identities=7% Similarity=-0.060 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 398 VSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 398 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
..|..+...+.+.|++++|+..|++.++. .++.. .... .+.... ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHH--HHHHHHHHHHHHHHH
Confidence 45666667777777777777777776651 11100 0000 111111 112245778889999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|++..++..++.++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 5556 467788888999999999999999999999999999999999999999988887765
Q ss_pred H
Q 046956 556 V 556 (574)
Q Consensus 556 ~ 556 (574)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=68.37 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=61.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKL 512 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 512 (574)
+..+...+.+.|++++|...|+++.+ ..+.+...|..+..++...|++++|+..|+++ ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33445556666777777777777665 23335666666777777777777777777666 3344 35566667777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc
Q 046956 513 YSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 513 ~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=70.68 Aligned_cols=128 Identities=14% Similarity=0.029 Sum_probs=72.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHH
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM----PVEPH----ASA 502 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~ 502 (574)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444445555555544444332100011 124444555555555555555555543 00111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 503 WGALLGACKLYSDIELGELVANRLFELEP------QNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 503 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+..+...+...|++++|+..++++++..+ .....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55556777778888888888888776522 1245677888888888999998888887764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.1e-06 Score=81.54 Aligned_cols=162 Identities=7% Similarity=-0.087 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHhhc---CCCC-cHHH
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDE----VAFTIVLTACSHVGLVEDGWRFFEAMQNVY---AIVP-SPEH 470 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~ 470 (574)
+..++..|...|++++|.+.+.++... +..++. .+.+.+...+...|+++.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777776665431 011111 122333334455677777777766654321 1122 2355
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----ch
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-----P--VEPH-ASAWGALLGACKLYSDIELGELVANRLFELE---PQN----AG 535 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 535 (574)
+..++..|...|++++|.++++++ . .++. ...+...+..|...|++++|...+++++... ++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777654 1 1222 3355556677777777777777777777652 222 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 536 SYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666677777777777777766554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-06 Score=78.66 Aligned_cols=113 Identities=5% Similarity=-0.188 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 046956 431 DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLG 508 (574)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 508 (574)
+...+..+...+...|++++|...|+++.+. .+.+...|..++.+|.+.|++++|.+.++++ ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567788888899999999999999999873 3446788889999999999999999999887 5555 4667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 509 ACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 509 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
++...|++++|+..++++++++|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999998877655444444333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.1e-07 Score=69.78 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 481 TGHLKSAYELLNSM-PV---EPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 481 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
.|++++|+..|+++ .. .|+ ...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666777777666 33 232 34555566667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 046956 556 VRSKMKER 563 (574)
Q Consensus 556 ~~~~~~~~ 563 (574)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=70.15 Aligned_cols=74 Identities=9% Similarity=0.000 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM-PV-------EPH-ASAW----GALLGACKLYSDIELGELVANRLFELEPQNAGS 536 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 536 (574)
.|..+..++.+.|++++|+..+++. .. +|+ ...| .....++...|++++|+..|++++++.|.+..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666667666666666554 33 776 4567 788899999999999999999999999998887
Q ss_pred HHHHHHH
Q 046956 537 YVLLSNI 543 (574)
Q Consensus 537 ~~~l~~~ 543 (574)
...+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.5e-07 Score=70.24 Aligned_cols=94 Identities=7% Similarity=-0.016 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 046956 467 SPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN------AGSYV 538 (574)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 538 (574)
+...+..++..+...|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888889999998888877 3344 56778888899999999999999999999999998 88889
Q ss_pred HHHHHHHhcCCchHHHHHHHHH
Q 046956 539 LLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
.++.++...|++++|...++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.3e-06 Score=80.60 Aligned_cols=149 Identities=8% Similarity=0.001 Sum_probs=82.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN--RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 445 (574)
.+..++..+.+.|++++|...|++..+ |+... +...++.+++...+. ...|..+..++.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 677889999999999999999998763 33221 122233333332221 13677888889999
Q ss_pred CcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH-HHhcCCHHHHHHH
Q 046956 446 GLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS-AWGALLGA-CKLYSDIELGELV 522 (574)
Q Consensus 446 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~-~~~~~~~~~a~~~ 522 (574)
|++++|+..++++.+. .+.+...|..+..+|...|++++|.+.|+++ ...|+.. .+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999873 3456788899999999999999999999988 5566543 34444433 3455677888899
Q ss_pred HHHHHhhCCCCch
Q 046956 523 ANRLFELEPQNAG 535 (574)
Q Consensus 523 ~~~~~~~~p~~~~ 535 (574)
|++++...|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-06 Score=84.95 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM---------PVEPH-ASAWGALLGACKLYSDIELGELVANRLFEL-----EPQN 533 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~ 533 (574)
.+++.|+.+|...|++++|..+++++ +..|+ ..+++.+...|..+|++++|+.++++++++ .|++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444455555555555555444433 12333 335666667777777777777777777764 5555
Q ss_pred ch---hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 534 AG---SYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 534 ~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
|. ....|..++...|++++|...+.++++..
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 44567777778888888888888877643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-05 Score=76.26 Aligned_cols=158 Identities=9% Similarity=-0.011 Sum_probs=117.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH
Q 046956 405 KGLSIHGHGRQAVSLFDRMLSEGLTPD----------------EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP 468 (574)
Q Consensus 405 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 468 (574)
..+...|++++|++.|.++.+...... ...+..++..|...|++++|.+++..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888776421111 1246788899999999999999999887643322222
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------C
Q 046956 469 ----EHYACMVDLLGRTGHLKSAYELLNSM-------PVEPH-ASAWGALLGACKLYSDIELGELVANRLFEL------E 530 (574)
Q Consensus 469 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 530 (574)
.+.+.+...+...|++++|.++++.. ...+. ..++..+...+...|++++|...+++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23445556667789999999888765 22333 456777889999999999999999998875 2
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 531 PQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33356889999999999999999999988764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=7.6e-06 Score=80.98 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=39.7
Q ss_pred HhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 046956 375 MNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVED 450 (574)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 450 (574)
.+.+.|++++|.+.|++..+ .+...|..+..+|...|++++|+..+++..+. .|+ ...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34444555555555544431 23344445555555555555555555555442 222 2344444444555555555
Q ss_pred HHHHHHHhHh
Q 046956 451 GWRFFEAMQN 460 (574)
Q Consensus 451 a~~~~~~~~~ 460 (574)
|.+.|+++.+
T Consensus 93 A~~~~~~al~ 102 (477)
T 1wao_1 93 ALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.7e-06 Score=67.09 Aligned_cols=132 Identities=12% Similarity=0.080 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGL-TPD----EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PE 469 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 469 (574)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555556666666666666665544210 011 125556666667777777777777766542111111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 470 HYACMVDLLGRTGHLKSAYELLNSM----PVEPH----ASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
.+..+...+...|++++|.+.+++. ....+ ...+..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566677777777777777777655 11111 2345566677888888888988888888764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=7.1e-06 Score=61.46 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+...+..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566777778888888888888888888888888888888888888888888888888887764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=58.93 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888776 2233 46677777888889999999999999999999999999999988887
Q ss_pred hcC
Q 046956 546 TAD 548 (574)
Q Consensus 546 ~~g 548 (574)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7e-06 Score=80.88 Aligned_cols=66 Identities=9% Similarity=-0.045 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...|..+..++.+.|++++|+..++++++++|+++.+++.++.+|...|++++|...|+++.+...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 467788889999999999999999999999999999999999999999999999999999987654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-06 Score=68.68 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=60.9
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVA 523 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 523 (574)
+.+.+++|.+.++...+ --+.+...|..+..++...|+++.+...+ +.+++|+..|
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~l 69 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHHH
Confidence 34455566666665554 22334555555555555554443222211 1256888888
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcC-----------CchHHHHHHHHHHhCCC
Q 046956 524 NRLFELEPQNAGSYVLLSNIYATAD-----------RWLDVCLVRSKMKERGL 565 (574)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~ 565 (574)
+++++++|+++.+|+.++.+|...| ++++|.+.|++..+.++
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 8888888888888888888887764 78888888887776543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=9.1e-06 Score=65.27 Aligned_cols=125 Identities=12% Similarity=0.063 Sum_probs=86.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH----------HHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLV----------EDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
.+.+.+++|...+++..+. .| +...|..+..++...+++ ++|+..|+++++. -+.+...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 4667899999999999985 45 556888888888888765 4777777777752 2224566777777
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046956 477 LLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
+|...|.+ .|+... ..|++++|++.|+++++++|++......+-.+ ++|.++
T Consensus 89 ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~-------~ka~el 140 (158)
T 1zu2_A 89 AYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQL 140 (158)
T ss_dssp HHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHH
T ss_pred HHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HhCHhc
Confidence 77666543 343311 13689999999999999999987655554332 555555
Q ss_pred HHHHHhCC
Q 046956 557 RSKMKERG 564 (574)
Q Consensus 557 ~~~~~~~~ 564 (574)
.-.+...+
T Consensus 141 ~~~~~~~~ 148 (158)
T 1zu2_A 141 HAEAYKQG 148 (158)
T ss_dssp HHHHHHSS
T ss_pred cCcccccc
Confidence 55555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=60.70 Aligned_cols=79 Identities=13% Similarity=-0.019 Sum_probs=45.1
Q ss_pred HHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046956 451 GWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 451 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
|+..|+++.+ ..+.+...+..++..|...|++++|++.++++ ...| +...|..+..++...|++++|+..++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555554 23334555666666666666666666666655 2223 344555555666666666666666666666
Q ss_pred hCC
Q 046956 529 LEP 531 (574)
Q Consensus 529 ~~p 531 (574)
+.|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=77.05 Aligned_cols=114 Identities=9% Similarity=-0.030 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALLGACK 511 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 511 (574)
..+..+...+.+.|++++|+..|+++.+.. +... .....+++.+ ..| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 456777777888888888888888877520 1100 0011111111 122 3567788889999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 512 LYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 512 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+.|++++|+..++++++++|+++.++..++.+|...|++++|...++++.+...
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999887553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-05 Score=56.96 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 046956 498 PHASAWGALLGACKLYSD---IELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRKIPG 570 (574)
Q Consensus 498 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 570 (574)
.++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+.+.. .|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 456677777777655544 699999999999999999999999999999999999999999999998876 554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=3.6e-05 Score=77.62 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=125.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEV-AFTIVLTACSHVGL----------VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 479 (574)
...++|++.++++++ ..|+.. .|+.-..++...|+ +++++..++.+.+ ..+.+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 345788999999999 466654 67666666666666 8999999999997 45567788888888889
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-------
Q 046956 480 RTG--HLKSAYELLNSM-PVEP-HASAWGALLGACKLYS-DIELGELVANRLFELEPQNAGSYVLLSNIYATA------- 547 (574)
Q Consensus 480 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 547 (574)
+.| +++++++.++++ ..+| +..+|+.....+...| .++++++.++++++.+|.+..+|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 3344 6888988888888888 899999999999999999999999999998874
Q ss_pred -------CCchHHHHHHHHHHhCCCc
Q 046956 548 -------DRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 548 -------g~~~~a~~~~~~~~~~~~~ 566 (574)
++++++.+.+++++..++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999888876543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=9.3e-05 Score=59.10 Aligned_cols=89 Identities=8% Similarity=-0.029 Sum_probs=44.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh---
Q 046956 474 MVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELEPQNAGSYVLLSNIYAT--- 546 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 546 (574)
+...|...+..++|++.|++.-...+......+...|.. .+|+++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333333333444444444443112233444444444444 45556666666655554 445556666666665
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 046956 547 -ADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 547 -~g~~~~a~~~~~~~~~~~ 564 (574)
.+++++|..++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666665554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.9e-05 Score=59.21 Aligned_cols=68 Identities=7% Similarity=-0.093 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 499 HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
+...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45677788889999999999999999999999999999999999999999999999999999876643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00027 Score=56.33 Aligned_cols=111 Identities=6% Similarity=-0.061 Sum_probs=92.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh----cCCHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR----TGHLKS 486 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 486 (574)
+++++|+.+|++..+.| .|+.. |...|...+.+++|.++|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 57889999999999987 44444 777788888899999999999874 466778888888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELE 530 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 530 (574)
|.+.|++.-...+......+...|.. .+|+++|+..++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999988434577788888888888 899999999999998874
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=7.4e-05 Score=54.39 Aligned_cols=66 Identities=24% Similarity=0.228 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|...+++..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 456777778899999999999999999999999999999999999999999999999999987653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.8e-05 Score=72.91 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=72.0
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCC---CCH-HHHHHHHHHHhccCcHHHHHHHHHHhHhhc--CCC---Cc-HHHHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSE---GLT---PDE-VAFTIVLTACSHVGLVEDGWRFFEAMQNVY--AIV---PS-PEHYAC 473 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~---g~~---p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~ 473 (574)
+..+|++++|+.++++.++. -+. |+. .+++.|...|...|++++|..+++++...+ -+. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33456666666666555431 111 222 256666666777777777776666654321 111 22 355667
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 474 MVDLLGRTGHLKSAYELLNSM---------PVEPHASAW-GALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
|+..|...|++++|..+++++ +..|+.... ..+..++...+.+++|+..|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777665 223433332 33336677788888888888887663
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=56.63 Aligned_cols=62 Identities=5% Similarity=-0.087 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0016 Score=60.22 Aligned_cols=138 Identities=11% Similarity=0.011 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc---C-----cHHHHHHHHHHhHh
Q 046956 395 RDVVSYCSMIKGLS--IHG---HGRQAVSLFDRMLSEGLTPDE-VAFTIVLTACSHV---G-----LVEDGWRFFEAMQN 460 (574)
Q Consensus 395 ~~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~---g-----~~~~a~~~~~~~~~ 460 (574)
.+...|...+++.. ..+ +..+|..+|++.++ ..|+. ..+..+..+|... + ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35566666665533 333 34789999999998 56764 3555444444210 0 11111112222111
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNA 534 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 534 (574)
....+.++.+|..+...+...|++++|...++++ ..+|+...|..+...+...|++++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1133455667777766666678888888777776 3456666665666777777888888888888888877754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.59 E-value=1.2e-05 Score=75.41 Aligned_cols=258 Identities=11% Similarity=0.060 Sum_probs=124.3
Q ss_pred cchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC--CChhhHHHHHHHHH
Q 046956 136 KYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE--RNVVSWTAMIVGYA 213 (574)
Q Consensus 136 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 213 (574)
...|..|.++....+.+.+|++-|-+ .-|+..|..+|....+.|.+++-...+....+ ++...=+.|+-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34555566666555555555443311 23445556666666666666666666555543 34444455666666
Q ss_pred hcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 046956 214 SVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDR 293 (574)
Q Consensus 214 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 293 (574)
+.++..+..+++ ..++..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|+++.|.+.-++ ..
T Consensus 128 k~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK--An 197 (624)
T 3lvg_A 128 KTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK--AN 197 (624)
T ss_dssp TSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT--CC
T ss_pred hhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 666655433322 224444555555666666666666555553311 01111112222222222211111 12
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
++.+|..+-.+|...+.+.-|.-.--.+.-. || ....++..|...|.+++.+.+++... |.+.....++..|+
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELa 270 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELA 270 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHH
Confidence 4556666666666666666554333222211 11 11224444556666666666655544 22222223566666
Q ss_pred HHhHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChHHHH
Q 046956 374 DMNAKCGNMDRAAELFETMPN-----------RDVVSYCSMIKGLSIHGHGRQAV 417 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~ 417 (574)
-.|++- +.++..+.++.... .....|..++-.|....++|.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 666653 33444444333221 23345666666666666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=53.53 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=61.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 473 CMVDLLGRTGHLKSAYELLNSM-PVEP-HAS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
..+..+.+.|++++|.+.++++ ...| +.. .+..+..++...|++++|+..++++++++|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3566788899999999999887 3445 456 77788888999999999999999999999999887733 34
Q ss_pred chHHHHHHHH
Q 046956 550 WLDVCLVRSK 559 (574)
Q Consensus 550 ~~~a~~~~~~ 559 (574)
+.++...+++
T Consensus 77 ~~~a~~~~~~ 86 (99)
T 2kc7_A 77 VMDILNFYNK 86 (99)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 4555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=70.85 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=57.7
Q ss_pred ccCcHHHHHHHHHHhHhhc--CCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVY--AIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM---------PVEPH-ASAWGALL 507 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 507 (574)
..|++++|..++++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++ +..|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577788887777765431 12222 355666777777777777777766654 12333 23456666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh-----CCCCchhH
Q 046956 508 GACKLYSDIELGELVANRLFEL-----EPQNAGSY 537 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~ 537 (574)
..|..+|++++|+.++++++++ .|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 6677777777777777777776 45555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00083 Score=49.66 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=46.6
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPE-HYACMVDLLGRTGHLKSAYELLNSM-PVEPHA-SAWGALLGACKLYSD 515 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~ 515 (574)
...+...|++++|...++++.+. .+.+.. .+..++.+|...|++++|.+.|+++ ...|+. ..+.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 34455666666666666666652 233345 5666666666666666666666665 223322 11110 34
Q ss_pred HHHHHHHHHHHHhhCCCCc
Q 046956 516 IELGELVANRLFELEPQNA 534 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~ 534 (574)
+.++...+++....+|+++
T Consensus 77 ~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHhccCcccc
Confidence 5555556655555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00089 Score=64.62 Aligned_cols=86 Identities=6% Similarity=-0.001 Sum_probs=64.9
Q ss_pred HcCChHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHHhccCcHHHHHHHHHHhHhhc--CC---CCc-HHHHHHHH
Q 046956 409 IHGHGRQAVSLFDRMLSE---GLTPD---E-VAFTIVLTACSHVGLVEDGWRFFEAMQNVY--AI---VPS-PEHYACMV 475 (574)
Q Consensus 409 ~~~~~~~a~~~~~~m~~~---g~~p~---~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~l~ 475 (574)
..|++++|+.++++.++. -+.|+ . .+++.|..+|...|++++|..+++++...+ -+ .|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 358899999999887652 22333 2 378888999999999999999998876531 11 233 36688899
Q ss_pred HHHhhcCCHHHHHHHHHhC
Q 046956 476 DLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~ 494 (574)
..|...|++++|..+++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999998876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00063 Score=50.58 Aligned_cols=64 Identities=9% Similarity=0.140 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 396 DVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 396 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+...|..+...|...|++++|+..|++.++.. +.+...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666666777777777777777766632 22344666666677777777777777776664
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00041 Score=67.11 Aligned_cols=104 Identities=10% Similarity=-0.073 Sum_probs=71.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhc--CCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-H
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVY--AIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM---------PVEPH-A 500 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~ 500 (574)
..+..+...|++++|+.++++..... -+.|+ ..+++.++.+|...|++++|+.+++++ +..|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33445667788888888888776531 12222 356777888888888888888877765 23343 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCchhHHHH
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFEL-----EPQNAGSYVLL 540 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~~l 540 (574)
.+++.+...|..+|++++|+.++++++++ .|++|.+-..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 45667777888888888888888888888 57777665544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.013 Score=44.40 Aligned_cols=148 Identities=9% Similarity=0.071 Sum_probs=105.7
Q ss_pred HHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHH
Q 046956 400 YCSMIKG--LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDL 477 (574)
Q Consensus 400 ~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 477 (574)
...|+.+ +.-.|..++..++..+... ..+..-|+.++.-....-+-+-..++++..-+.+.+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG-------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc-------------
Confidence 3444443 3456788888888888776 334556666666555555556666666665542222
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 478 LGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
..+|++......+-.+. .+...+...+..+..+|.-++-.+++...+..+|.+|.....++.+|.+.|+..+|.+++
T Consensus 72 -s~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 72 -DKCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp -GGCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HhhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 24566666666655553 344566667788899999999999999987888888999999999999999999999999
Q ss_pred HHHHhCCCc
Q 046956 558 SKMKERGLR 566 (574)
Q Consensus 558 ~~~~~~~~~ 566 (574)
.++-++|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999985
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.35 E-value=4.8e-05 Score=71.58 Aligned_cols=233 Identities=10% Similarity=0.117 Sum_probs=146.6
Q ss_pred hhHHHHHHHHHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhc
Q 046956 69 HSLVAHFISLCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSH 148 (574)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 148 (574)
+.+|+.|- ......+.+.+|+..| +...|+..|..++.+..+.|++++-+..+.-.++..- +...=+.|+-+|++
T Consensus 54 p~VWs~Lg-kAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLA-KAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCSSSHH-HHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred ccHHHHHH-HHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 45566666 7777777777777765 3445666788888888888888888888766655532 44445678888888
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC------------------------CChhh
Q 046956 149 VLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE------------------------RNVVS 204 (574)
Q Consensus 149 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 204 (574)
.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888766554442 46666666777777778888888777776542 35566
Q ss_pred HHHHHHHHHhcCChHHHHHHH-hhcCCCCcchHHHHHHHHHccCChHHHHHHHh---cCCCCchhHHHHHHHHHHhcCCh
Q 046956 205 WTAMIVGYASVGDLVEAKTVF-DLMPERSNVSWNALIGGLVKIGDLRSARQLFD---EMPERNVVSYTTMIDGYAKVGDM 280 (574)
Q Consensus 205 ~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 280 (574)
|-.+-.+|...+.+.-|.-.- +-+..+| -...++..|-..|-+++-..+++ ++.......|+-|.-.|++- +.
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 777777777766665443221 1111111 11123334555666666666666 44345667788888888765 44
Q ss_pred HHHHHHHhhCCC----C-------CHhHHHHHHHHHHhCCCchHHHH
Q 046956 281 TSARSLFEAAPD----R-------DVVAWSALISGYAQNGQPDEAVK 316 (574)
Q Consensus 281 ~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~A~~ 316 (574)
++..+.++..-. | ....|..++-.|.+-.+++.|..
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 555544443222 2 34568888888888888886653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00091 Score=59.14 Aligned_cols=88 Identities=9% Similarity=0.093 Sum_probs=67.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHh-cCCchH
Q 046956 484 LKSAYELLNSM-PVEPH---ASAWGALLGACKL-----YSDIELGELVANRLFELEPQN-AGSYVLLSNIYAT-ADRWLD 552 (574)
Q Consensus 484 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~ 552 (574)
..+|...++++ ...|+ ...|..+...|.. -|+.++|.+.|+++++++|+. ..+++.+++.++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 45665 4566666677777 489999999999999999974 9999999998888 489999
Q ss_pred HHHHHHHHHhCCCccCCCc
Q 046956 553 VCLVRSKMKERGLRKIPGC 571 (574)
Q Consensus 553 a~~~~~~~~~~~~~~~~~~ 571 (574)
+.+++++.....++..|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999988887765653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0015 Score=63.19 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=66.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC---CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHhhc--CCC---Cc-H
Q 046956 402 SMIKGLSIHGHGRQAVSLFDRMLSEG---LTPDE----VAFTIVLTACSHVGLVEDGWRFFEAMQNVY--AIV---PS-P 468 (574)
Q Consensus 402 ~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~---p~-~ 468 (574)
..+..+...|++++|+.++++.++.. +.|+. .+++.+..+|...|++++|+.+++++...+ -+. |+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33555667888889988888887531 22332 377888888888899999988888776431 112 22 3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
.+++.|+..|...|++++|..+++++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66778888888899999888888776
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.023 Score=60.46 Aligned_cols=153 Identities=18% Similarity=0.140 Sum_probs=88.5
Q ss_pred HHHhcCChHHHHH-HHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 046956 211 GYASVGDLVEAKT-VFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEA 289 (574)
Q Consensus 211 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (574)
.....+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. + ..-.......|++++|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHHHHHHh
Confidence 3345677777766 443322 012225566666667777777666542 1 1113445667888888888776
Q ss_pred CCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHH
Q 046956 290 APDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVI 369 (574)
Q Consensus 290 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 369 (574)
+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....+.+.....| .+
T Consensus 678 ~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-------~~ 739 (814)
T 3mkq_A 678 ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-------KF 739 (814)
T ss_dssp CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CH
T ss_pred hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-------ch
Confidence 64 456788888888888888888888887642 2233333444555555444444444333 23
Q ss_pred HHHHHHhHhcCCHHHHHHHHhh
Q 046956 370 AALVDMNAKCGNMDRAAELFET 391 (574)
Q Consensus 370 ~~l~~~~~~~g~~~~A~~~~~~ 391 (574)
+.....|.+.|++++|.+++.+
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344455666777766665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0033 Score=58.12 Aligned_cols=134 Identities=11% Similarity=0.016 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHh--cc---CcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhh---cC-----C---HHHHHHH
Q 046956 428 LTPDEVAFTIVLTACS--HV---GLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGR---TG-----H---LKSAYEL 490 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-----~---~~~A~~~ 490 (574)
.+.+...|...+.+.. .. ....+|..+|+++++. .|+ ...|..+..+|.. .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3555567777666533 22 3457899999999964 454 4555544444421 11 1 1122222
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 491 LNSMP-VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 491 ~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...+. ...++..+..+...+...|++++|+..+++++.++|+ ...|..+++++...|++++|.+.+++....++
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22332 2346777777777777789999999999999999975 77888999999999999999999999887654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.004 Score=46.48 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-----P----VEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 538 (574)
...+..++..+.+.|+++.|...++.+ . ..+....+..+..++.+.|+++.|+..+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666666666666666554 0 1134567778889999999999999999999999999988877
Q ss_pred HHH
Q 046956 539 LLS 541 (574)
Q Consensus 539 ~l~ 541 (574)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0032 Score=49.90 Aligned_cols=90 Identities=18% Similarity=0.028 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTG---HLKSAYELLNSM-PVE-P--HASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
..+.+.|.+... .-.++..+...+..++.+.+ +.++++.+++.. ... | ....+..+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444443 22245555555666666655 444666666555 222 3 23455556677888999999999
Q ss_pred HHHHHHhhCCCCchhHHHH
Q 046956 522 VANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l 540 (574)
.++.+++.+|++..+....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHH
Confidence 9999999999887766554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.002 Score=51.06 Aligned_cols=81 Identities=9% Similarity=-0.097 Sum_probs=66.1
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 485 KSAYELLNSM--PVEPHASAWGALLGACKLYS---DIELGELVANRLFELE-P-QNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 485 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
..+.+.|.+. ...++..+...+..++.+.+ +.++++.++++.++.+ | ++...++.|+..|.+.|++++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444445443 23467888888889999988 7779999999999998 7 56889999999999999999999999
Q ss_pred HHHHhCCC
Q 046956 558 SKMKERGL 565 (574)
Q Consensus 558 ~~~~~~~~ 565 (574)
+.+.+..+
T Consensus 95 ~~lL~ieP 102 (152)
T 1pc2_A 95 RGLLQTEP 102 (152)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCC
Confidence 99987554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.63 Score=46.91 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 411 GHGRQAVSLFDRMLSEG-LTPDEV--AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
.+.+.|...+......+ +.+... ....+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 47789999998886543 322222 2333444445555355666666665442 23333344444555678999999
Q ss_pred HHHHHhCCCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 046956 488 YELLNSMPVEP-HASAWGA-LLGACKLYSDIELGELVANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 488 ~~~~~~~~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (574)
...|+.++..+ +..-|.. +..++...|+.++|..+|+++.+ +. ..|-.|
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~--~fYg~l 355 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QR--GFYPMV 355 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SC--SHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--ChHHHH
Confidence 99999995433 2232322 33677788999999999998875 32 445544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.017 Score=41.87 Aligned_cols=71 Identities=13% Similarity=0.018 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 465 VPSPEHYACMVDLLGRTGH---LKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
+.++..+..+..++...++ .++|..++++. ...|+ ...+..+...+...|++++|+..|+++++.+|.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4566777777777754444 68888888877 44554 556666668888899999999999999998888443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.19 Score=53.33 Aligned_cols=169 Identities=19% Similarity=0.103 Sum_probs=107.3
Q ss_pred HHHHcCCChHHHHH-HHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHh
Q 046956 179 DLYGKRKEISCARK-VFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFD 257 (574)
Q Consensus 179 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (574)
......+++++|.+ ++..+.. ......++..+.+.|.+++|+++.+. . ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 34456788888888 6644431 22236777778888999988876642 1 122344567899999999988
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 258 EMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
.+ .+...|..+...+.+.|+++.|++.|..+.+ |..+...+...|+.+...++-+....
T Consensus 677 ~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~-------------- 735 (814)
T 3mkq_A 677 DE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAET-------------- 735 (814)
T ss_dssp TC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred hh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 76 4668899999999999999999998877654 22333344445555554444443333
Q ss_pred HHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 338 SACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
.|+.+.|...+...- -+...+++|.+.+++++|..+-+...
T Consensus 736 -----~~~~~~A~~~~~~~g----------~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 736 -----TGKFNLAFNAYWIAG----------DIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp -----TTCHHHHHHHHHHHT----------CHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred -----cCchHHHHHHHHHcC----------CHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344444443332211 23445566677788888877766544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.016 Score=43.09 Aligned_cols=66 Identities=15% Similarity=-0.032 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 499 HASAWGALLGACKLYSDIELGELVANRLFELE-------PQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
+......+...+...|+++.|+..++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44556678888999999999999999999863 2446789999999999999999999999987644
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.063 Score=40.81 Aligned_cols=90 Identities=18% Similarity=0.001 Sum_probs=58.6
Q ss_pred HHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 046956 449 EDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS---AYELLNSM-PVE-P--HASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 449 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
..+.+.|...... +. ++..+--.++.++.+..+..+ ++.+++.+ ... | .......+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444445444442 22 566666666777777666555 66666665 222 3 12334445578889999999999
Q ss_pred HHHHHHhhCCCCchhHHHH
Q 046956 522 VANRLFELEPQNAGSYVLL 540 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l 540 (574)
.++.+++..|++..+....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 9999999999988776554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.33 Score=39.44 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=56.9
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHH
Q 046956 272 DGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNW 351 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 351 (574)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777766655 3556677777777777777777777766532 2223333444555544444
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 352 VDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
+-+.....| -++.....+...|+++++.++|.+..
T Consensus 82 la~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 433333322 13333344445566666666555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.23 Score=40.44 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=71.6
Q ss_pred HHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046956 374 DMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWR 453 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 453 (574)
.....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... +..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777776655 3456777777777777777777777766432 2333334445566655554
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046956 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRL 526 (574)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 526 (574)
+-+..... | -++.-...+.-.|+++++.+++.+.+.-|.. .......|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 44444332 1 1333344455677777777777766422211 11223355566666665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.027 Score=57.81 Aligned_cols=55 Identities=18% Similarity=0.079 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 507 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
...|...|+++.|+.+.+++....|.+...|..|+.+|...|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567789999999999999999999999999999999999999999999998874
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.13 Score=40.09 Aligned_cols=110 Identities=6% Similarity=-0.045 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHhccCcH------HHHHHHHHHhHhhcCCCCcHH-HHHHHHH------HHhhcCCHHHHHHHHHhC-C
Q 046956 430 PDEVAFTIVLTACSHVGLV------EDGWRFFEAMQNVYAIVPSPE-HYACMVD------LLGRTGHLKSAYELLNSM-P 495 (574)
Q Consensus 430 p~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~-~ 495 (574)
-|..+|-..+....+.|+. ++..++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+ .
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3456787777777777888 888899998887 6777631 1111111 123447777788877776 1
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 046956 496 VE-PHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLS 541 (574)
Q Consensus 496 ~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (574)
.. .=...|......-.++|+...|.+++.+++.+.|.....+....
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 11 11556666666677788888888888888888777665554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=95.30 E-value=1.7 Score=39.61 Aligned_cols=167 Identities=15% Similarity=0.103 Sum_probs=99.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLF----DRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++. +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 677778888899999999887643 233445566665554443 44455677788777777777665
Q ss_pred ccCc--HHHHHHHHHHhHh---hcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 046956 444 HVGL--VEDGWRFFEAMQN---VYA--IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDI 516 (574)
Q Consensus 444 ~~g~--~~~a~~~~~~~~~---~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 516 (574)
.... ... ..+.+++++ ..| -.-++.....+...|.+.|++.+|...|- .+.++.+..+..++.-+...+
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~-- 181 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQD-- 181 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTS--
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhc--
Confidence 5432 111 222222211 113 33467778889999999999999999884 333344455555543332222
Q ss_pred HHHHHHHHHHHhhCCCCchhHHH-HHHHHHhcCCchHHHHHHHHHHh
Q 046956 517 ELGELVANRLFELEPQNAGSYVL-LSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.|.....+.. .+--|...|+...|..+++...+
T Consensus 182 -------------~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 -------------ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2333333332 23346778888888887776664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.16 Score=39.69 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=69.7
Q ss_pred CCChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHH---H---HhccCcHHHHHHHHHHhHh
Q 046956 394 NRDVVSYCSMIKGLSIHGHG------RQAVSLFDRMLSEGLTPDEV-AFTIVLT---A---CSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 394 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~l~~---~---~~~~g~~~~a~~~~~~~~~ 460 (574)
..|..+|-..+...-+.|+. ++..++|++.... ++|+.. .+...+. - +...+++++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35777888888888888888 8888888888775 677642 2222222 2 2234778888888888876
Q ss_pred hcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 461 VYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
. .-.- ...|...+..-.++|++..|.+++.+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 2222 777777788888889999998888776
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.07 Score=40.57 Aligned_cols=82 Identities=7% Similarity=-0.137 Sum_probs=62.4
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCCchHHHHH
Q 046956 484 LKSAYELLNSM--PVEPHASAWGALLGACKLYSDIEL---GELVANRLFELE-P-QNAGSYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 484 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~ 556 (574)
+..+.+.+.+. ...++..+--.+..++.+.++... ++.+++..++.+ | ......+.|+-.+.+.|+|++|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444433 124677777778888888876655 999999998886 5 5667889999999999999999999
Q ss_pred HHHHHhCCC
Q 046956 557 RSKMKERGL 565 (574)
Q Consensus 557 ~~~~~~~~~ 565 (574)
++.+.+..+
T Consensus 97 ~~~lL~~eP 105 (126)
T 1nzn_A 97 VRGLLQTEP 105 (126)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 999987543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=1.9 Score=38.23 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHhhCCCCCh--hHHHHHHHH-HHHc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc
Q 046956 379 CGNMDRAAELFETMPNRDV--VSYCSMIKG-LSIH--GH------GRQAVSLFDRMLSEGLTPD---EVAFTIVLTACSH 444 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~ 444 (574)
.++..+-.+.+.++.+.++ ..|..++.+ +... |+ ...|...+++.++ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444555555666554333 345555543 2322 22 4466666777776 4566 2466666666666
Q ss_pred c-----CcHHHHHHHHHHhHhhcCCCC--cHHHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 046956 445 V-----GLVEDGWRFFEAMQNVYAIVP--SPEHYACMVDLLGRT-GHLKSAYELLNSM 494 (574)
Q Consensus 445 ~-----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 494 (574)
. |+.++|.+.|++..+. .| +..++..+.+.+++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 7777777777777753 33 355666666666663 6777777777665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.10 E-value=6.9 Score=41.24 Aligned_cols=252 Identities=10% Similarity=-0.012 Sum_probs=134.1
Q ss_pred HHHHhcCChHHHHHHHhhCCC----CC--HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 046956 272 DGYAKVGDMTSARSLFEAAPD----RD--VVAWSALISGYAQNGQPDEAVKIFSDMCSKNV-------QPDEFILVSLMS 338 (574)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------~p~~~~~~~ll~ 338 (574)
-+....|+.++++.+++.... .+ +..-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345667888888888887664 22 22333444556666766778887777654321 011112222222
Q ss_pred HHhccCCc-chHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC-CChhHH--HHHHHHHHHcCChH
Q 046956 339 ACSQVGNL-DLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN-RDVVSY--CSMIKGLSIHGHGR 414 (574)
Q Consensus 339 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~li~~~~~~~~~~ 414 (574)
++...|.- +++...+..+............-..++..+.-.|+-+....++..+.+ .+.... -.+.-++...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 33333432 344444444443222111111233455556667777777777665442 222222 33334445678888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHH---HHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 046956 415 QAVSLFDRMLSEGLTPDEV-AFT---IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYEL 490 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~-~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 490 (574)
.+..+.+.+... .++. -|. .+..+|+-.|+.....+++..+.. ....+..-...+.-++...|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888763 3333 232 345567888998877778888886 3333344333444455556776667777
Q ss_pred HHhCCCCCCHHHHHHH--HHHHHhcCCH-HHHHHHHHHHHh
Q 046956 491 LNSMPVEPHASAWGAL--LGACKLYSDI-ELGELVANRLFE 528 (574)
Q Consensus 491 ~~~~~~~p~~~~~~~l--~~~~~~~~~~-~~a~~~~~~~~~ 528 (574)
++.+....|..+-... ..+....|.. .+++..+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7655222333332222 2333333332 567777777643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.87 Score=35.27 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 046956 465 VPSPEHYACMVDLLGRTGHLK---SAYELLNSM-PVEP-HA-SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 465 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 538 (574)
.|+..+--.++.++.+..+.+ +++.+++.+ ...| +. .....+.-++.+.|++++|.++.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 577777777788888877554 566677666 3334 23 34445558889999999999999999999999877655
Q ss_pred HH
Q 046956 539 LL 540 (574)
Q Consensus 539 ~l 540 (574)
..
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=93.70 E-value=2.7 Score=35.17 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=55.5
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHH
Q 046956 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLF 256 (574)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (574)
.+..+.+.|+.+....+.+.+..++...-...+.++...|..+..-.+.+.+..++...-...+.++.+.++.+....+.
T Consensus 34 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~ 113 (201)
T 3ltj_A 34 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLI 113 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred HHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 33333333333333333333334444444444445555554433333333343444444444444444444443333333
Q ss_pred hcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCC
Q 046956 257 DEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNG 309 (574)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 309 (574)
..+..++..+-...+.+..+.++.+....+.+.+.+++...-...+.++...|
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33334444444444444444444333333333333344444444444444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=93.53 E-value=3 Score=35.20 Aligned_cols=146 Identities=12% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHH
Q 046956 176 SLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQL 255 (574)
Q Consensus 176 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (574)
..+..+.+.|+.+....+.+.+.++|...-...+.++...|..+..-.+.+.+..++...-...+.++.+.++.+....+
T Consensus 38 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L 117 (211)
T 3ltm_A 38 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPL 117 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 33333333343333333333333344444444444444444433333333333334444444444444444443333333
Q ss_pred HhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 046956 256 FDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMC 322 (574)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 322 (574)
...+..++..+-...+.+..+.|+.+....+.+.+.+++...-...+.++.+.+. .++...+..+.
T Consensus 118 ~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 118 IKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3333344554444555555555544333333333334444444444444444443 33444444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=93.47 E-value=3.1 Score=35.14 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=95.7
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchh
Q 046956 186 EISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVV 265 (574)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 265 (574)
+.+....+.+.+..+|...-...+..+.+.|..+..-.+.+.+..++...-...+.++...++.+....+...+..++..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33444444555555666666666777777777555555556566666666666677777777665555555566567777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 046956 266 SYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGN 345 (574)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 345 (574)
+-...+.+..+.|+.+....+.+.+.+++...-...+.++...|.. ++...+..+.+ .++..+-...+.++...+.
T Consensus 97 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7777777777777765555555556666766666666666666653 34444444443 3455555555666655554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.23 E-value=4.2 Score=38.19 Aligned_cols=57 Identities=11% Similarity=0.005 Sum_probs=25.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHhhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 438 VLTACSHVGLVEDGWRFFEAMQNVYAIVPS----PEHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 438 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
++..|...|++.+|..++.++.+...-..+ .+++..-++.|...|++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444455555555555555554443111111 133334444455555555555544433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.77 Score=36.65 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=63.3
Q ss_pred CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH-------HHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 046956 427 GLTPDEV--AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP-------EHYACMVDLLGRTGHLKSAYELLNSM--- 494 (574)
Q Consensus 427 g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 494 (574)
|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+++++...|++..|...|+++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444433 34444556677778888777777655432233331 34555667777777777777777663
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 495 -PVEPHAS-AWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 495 -~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
+.-+... ....+. . ..... .-.. .+.+.+.-+.++.+|.+.|++++|..+++.+.
T Consensus 93 ~k~l~k~~s~~~~~~-~---~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG-N---SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhcCCCcccccc-c---cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 1001000 000000 0 00000 0001 13344677889999999999999999987653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.94 E-value=0.47 Score=36.23 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 464 IVPSPEHYACMVDLLGRTGHL---KSAYELLNSM-PVEP-H-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 464 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
-.|++.+--.++.++.+..+. .+++.+++.+ ...| . ...+..+.-++.+.|+++.|.+..+.+++..|+|..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 345666666677777776654 3566666665 2334 2 34455566788888999999999999888888887765
Q ss_pred HHH
Q 046956 538 VLL 540 (574)
Q Consensus 538 ~~l 540 (574)
...
T Consensus 116 ~Lk 118 (134)
T 3o48_A 116 ALK 118 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.85 E-value=2.5 Score=32.35 Aligned_cols=135 Identities=16% Similarity=0.042 Sum_probs=89.1
Q ss_pred HhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 377 AKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
.-.|..++..++..+..+ .+..-||=+|.-....-+-+-..+.++..-. --| ....|+.......+
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHHH
Confidence 445788888888877663 3445555555555555555555555544332 111 12345555555555
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNS-M-PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
-.+- .+.+....-++.+..+|..++-.+++.. . ..+|++..+..+..+|.+.|+..+|.+++.++-+..
T Consensus 85 ~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 85 VINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4332 2445556667788889999999999988 4 456788888889999999999999999999987764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.57 Score=37.42 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=27.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC-CCCC-----H--HHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSEG-LTPD-----E--VAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
+..+...|.++.|+-+.+.+.... ..|+ . .++..+.+++...|++..|...|+++.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344445555555555554433210 1122 1 1445555566666666666666666543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.41 E-value=0.76 Score=35.09 Aligned_cols=73 Identities=10% Similarity=-0.083 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHhccCc---HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 046956 428 LTPDEVAFTIVLTACSHVGL---VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS 501 (574)
Q Consensus 428 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 501 (574)
-.|+..|--.+..++.+..+ ..+++.+++.+.+. +..-..+.+..+.-++.+.|++++|.++.+.+ ..+|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 35666655555556665543 45677888877764 32123566667777888888888888888877 6667543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.38 E-value=4.8 Score=38.84 Aligned_cols=181 Identities=10% Similarity=0.127 Sum_probs=115.3
Q ss_pred cCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH----Hhc
Q 046956 379 CGNMDRAAELFETMPN---------RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSE-GLTPDEVAFTIVLTA----CSH 444 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~----~~~ 444 (574)
.|+++.|.+.+-.+.+ ........++..|...|+++...+.+.-+... |..+. ....+++. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 3678888887654431 23456777889999999999998887766543 32222 22333332 222
Q ss_pred cCcHH--HHHHHHHHhHhhc--CCCC---cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCC---HHHHHHHHHH
Q 046956 445 VGLVE--DGWRFFEAMQNVY--AIVP---SPEHYACMVDLLGRTGHLKSAYELLNSMP-----VEPH---ASAWGALLGA 509 (574)
Q Consensus 445 ~g~~~--~a~~~~~~~~~~~--~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~---~~~~~~l~~~ 509 (574)
....+ .-..+.+...... .+-. .......|+..|...|++.+|.+++..+. .... ...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 23222 2222222221100 1111 22345678899999999999999998872 1121 2345555688
Q ss_pred HHhcCCHHHHHHHHHHHHhh---CCCCc----hhHHHHHHHHHhcCCchHHHHHHHHHH
Q 046956 510 CKLYSDIELGELVANRLFEL---EPQNA----GSYVLLSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~---~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
|...+|+.+|..++.++... .+.++ ..+...+..+...++|.+|.+.|.++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999987532 33333 367788999999999999998887764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.18 E-value=3.1 Score=32.20 Aligned_cols=70 Identities=10% Similarity=-0.074 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHhccCc---HHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 046956 429 TPDEVAFTIVLTACSHVGL---VEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH 499 (574)
Q Consensus 429 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 499 (574)
.|+..+--.+..++.+..+ ..+++.+++.+.+. +..-..+....+.-++.+.|++++|.++.+.+ ..+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4455544444555555443 34566666666553 22223344455566666667777766666665 44554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.98 E-value=14 Score=38.98 Aligned_cols=296 Identities=11% Similarity=0.095 Sum_probs=157.6
Q ss_pred HHHHHHHHhcCChHHH-HHH-HhhcCCC-CcchHHH-HHHHHHccCChHHHHHHHhcCCC----Cc--hhHHHHHHHHHH
Q 046956 206 TAMIVGYASVGDLVEA-KTV-FDLMPER-SNVSWNA-LIGGLVKIGDLRSARQLFDEMPE----RN--VVSYTTMIDGYA 275 (574)
Q Consensus 206 ~~li~~~~~~g~~~~a-~~~-~~~~~~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~l~~~~~ 275 (574)
.++..++...|--.+. ++. .+++-+. +..-+.+ ..-+....|+.+++..++..... .+ ...-..+.-+..
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli 422 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI 422 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh
Confidence 3556777777754332 111 1111111 2222222 23345678888899999986543 12 233344455566
Q ss_pred hcCChHHHHHHHhhCCC-CC----------HhHHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCHHHHH--HHHHHHh
Q 046956 276 KVGDMTSARSLFEAAPD-RD----------VVAWSALISGYAQNGQ-PDEAVKIFSDMCSKNVQPDEFILV--SLMSACS 341 (574)
Q Consensus 276 ~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~ 341 (574)
.+|..+++..++..... .+ +..-.++.-+++-.|. -+++.+.+..+....- +...... .+...+.
T Consensus 423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 66766677776655332 22 1122333334444443 3467777777665421 1111122 2333345
Q ss_pred ccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHH--hHhcCCHHHHHHHHhhCC-CCChh-HHH---HHHHHHHHcCChH
Q 046956 342 QVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDM--NAKCGNMDRAAELFETMP-NRDVV-SYC---SMIKGLSIHGHGR 414 (574)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~~~~~ 414 (574)
..|+.+....++..+.+.. +.. +...++.+ +.-.|+.+.+..+++.+. ..+.. -|. ++.-+|+..|+..
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~-vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGN-ITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHH-HHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHH-HHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 6677777777777766532 222 34334443 346677777777766655 23332 232 3445677889987
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH-HHHHHHHHh
Q 046956 415 QAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL-KSAYELLNS 493 (574)
Q Consensus 415 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 493 (574)
....++..+.... ..+......+.-++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .++++.+..
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 7777998888742 22222233333344456666666777766665 3345554444455555555543 678888888
Q ss_pred CCCCCCHHHHHHHHHH
Q 046956 494 MPVEPHASAWGALLGA 509 (574)
Q Consensus 494 ~~~~p~~~~~~~l~~~ 509 (574)
+...++..+-...+.+
T Consensus 655 L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHTCSSHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHH
Confidence 8556666555444433
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=91.73 E-value=5.1 Score=33.40 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=33.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 046956 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279 (574)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (574)
++...-...+.++.+.|+.+..-.+.+.+..++...-...+.++.+.++.+....+..-+..++..+-...+.+..+.|.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333333444444444433333333333333433334444444444443333333333334455555555555555544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=13 Score=37.53 Aligned_cols=344 Identities=10% Similarity=0.019 Sum_probs=166.5
Q ss_pred HHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchHHHHHHHHHccCChHH
Q 046956 175 TSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMP---ERSNVSWNALIGGLVKIGDLRS 251 (574)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 251 (574)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+- ...+..+..++..+.+.|.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~l-- 152 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ-- 152 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS--
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCC--
Confidence 4445566677788887776666 33344444445666777787766666555442 12455566666666655432
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 046956 252 ARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEF 331 (574)
Q Consensus 252 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 331 (574)
+....-.-+......|+...|..+...+..........++..+. +...+...... +.++..
T Consensus 153 -----------t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~-----~~~~~~ 213 (618)
T 1qsa_A 153 -----------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDF 213 (618)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHH
T ss_pred -----------CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhc-----cCCChh
Confidence 22222223355556677777777766663222122222222222 22233222221 122222
Q ss_pred ---HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChh---hHHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHH
Q 046956 332 ---ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRA---HVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSM 403 (574)
Q Consensus 332 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l 403 (574)
.+...+.-+.+. +.+.|...+....+...- +.. .....++......+...++...+.... ..+.....-.
T Consensus 214 ~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 291 (618)
T 1qsa_A 214 TRQMAAVAFASVARQ-DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERR 291 (618)
T ss_dssp HHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHH
Confidence 122222222332 556677776666543321 221 122223333334442444444444422 1222222223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC
Q 046956 404 IKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH 483 (574)
Q Consensus 404 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 483 (574)
+....+.|+++.|...|+.|.... ........-+..++...|+.++|..+|+.+... . .-|..+.. .+.|.
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa--~~Lg~ 362 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA--QRIGE 362 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH--HHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH--HHcCC
Confidence 333456799999999998876532 123444556677888899999999999988741 1 12332221 12221
Q ss_pred HHHHHHHHHhCCCCC---CHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 046956 484 LKSAYELLNSMPVEP---HASA---WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVR 557 (574)
Q Consensus 484 ~~~A~~~~~~~~~~p---~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (574)
.-. +......+ .... ....+..+...|....|...+..+.+.. ++.-...++......|.++.+....
T Consensus 363 ~~~----~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 363 EYE----LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCC----CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCC----CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 100 00000000 0000 1122344556677777777766665532 2333445555556666666555433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.92 E-value=8.5 Score=42.39 Aligned_cols=80 Identities=9% Similarity=0.028 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCh---hhHHHHHHHHhHhcCCHHHHHHHHhhCCC--CChhHHHHHHHH
Q 046956 332 ILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSR---AHVIAALVDMNAKCGNMDRAAELFETMPN--RDVVSYCSMIKG 406 (574)
Q Consensus 332 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 406 (574)
-|..++..+.+.+..+.+.++-..+.+.....+. ...+..+.+.+...|++++|...+-.+.. .-......++..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3555555555666666666555555443222111 11455566666666666666655544331 112334444444
Q ss_pred HHHcC
Q 046956 407 LSIHG 411 (574)
Q Consensus 407 ~~~~~ 411 (574)
++..|
T Consensus 981 lce~~ 985 (1139)
T 4fhn_B 981 LTKQG 985 (1139)
T ss_dssp HHHHC
T ss_pred HHhCC
Confidence 44443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.8 Score=43.37 Aligned_cols=59 Identities=17% Similarity=-0.009 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 504 GALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 504 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..++.++...|++++++..++.++..+|-+-..+..|..+|.+.|+..+|.+.|+++.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666777888888888887777887777888888888888888888877776643
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.35 E-value=3 Score=29.74 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=42.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH
Q 046956 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 333 (574)
+..+...|++++|..+.+...-||...|.+|... +.|..+++...+.++..+| .|....|
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3456678888888888888888888888776543 6677778877777776665 4444444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.10 E-value=10 Score=34.14 Aligned_cols=168 Identities=10% Similarity=0.035 Sum_probs=98.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSL----FDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
.|.++..-|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 677788888888999999887643 23345566776665554 444555678888877777777665
Q ss_pred ccCcHH-HHHHHHHHhHh---hcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 046956 444 HVGLVE-DGWRFFEAMQN---VYA--IVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY---S 514 (574)
Q Consensus 444 ~~g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~ 514 (574)
....-+ .-..+++++++ ..+ -.-++.....++..|.+.|++.+|...|-... .-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCC
Confidence 422111 11222222221 112 22467888889999999999999998776321 11344444444322222 3
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHH-HHHHHHHhcCCchHHHHHHHHHHh
Q 046956 515 DIELGELVANRLFELEPQNAGSYV-LLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
...+ ...+. ..+--|...|+...|..+++...+
T Consensus 183 ~~~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred Ccch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222 22221 122236677888888888877654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.93 E-value=11 Score=34.05 Aligned_cols=168 Identities=8% Similarity=0.048 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHH----HHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVK----IFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
|.++..=|.+.+++++|++++.. -...+.+.|+..-|.+ +++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34556677778888888877543 2334556677655554 45556667888888888888877766
Q ss_pred cCCcc-hHHHHHHHHH----HhCC-CCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc---CCh
Q 046956 343 VGNLD-LSNWVDSYLS----RSHM-DLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIH---GHG 413 (574)
Q Consensus 343 ~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~ 413 (574)
....+ .-..+.+.++ +.+. +...+.+...++..|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 43222 2233444443 3322 3333347888999999999999999877633222344444444333332 222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
.++-- ..-..++ .|.-.|+...|..+++...+
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 22111 1111222 34567888888888887664
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.74 E-value=2.8 Score=29.85 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=44.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 046956 271 IDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILV 334 (574)
Q Consensus 271 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 334 (574)
+..+...|++++|..+.+...-||...|.+|.. .+.|..+++...+.++..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345677888888888888888888888877654 46788888888887777765 44444443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.70 E-value=0.37 Score=42.00 Aligned_cols=55 Identities=24% Similarity=0.255 Sum_probs=28.1
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 478 LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
+.+.|.+++|++....- +.+| |...-..++..++-.|++++|.+-++-+.+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 44555555555544333 3334 2333334445555556666666555555555555
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.62 E-value=1.6 Score=31.26 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 412 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
+.-+..+-++.+....+.|++......+.+|.+.+++..|.++++.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666777777778899999999999999999999999999999887533 33456776653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.31 E-value=4.7 Score=44.39 Aligned_cols=65 Identities=6% Similarity=-0.199 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCch----hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEP-QNAG----SYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.-|..++..+.+.+.++.+.++.+.+++..+ ++.. .|..+.+.+...|++++|...+-.+.....
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 3455566667777777777777777776543 3221 466667777777777777777766655443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.01 E-value=4.3 Score=35.45 Aligned_cols=119 Identities=14% Similarity=0.076 Sum_probs=74.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcH----HHHHHHHHHHhhc
Q 046956 406 GLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSP----EHYACMVDLLGRT 481 (574)
Q Consensus 406 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~ 481 (574)
...+.|+.++++.....-++.. +-|...-..++..++-.|++++|.+-++...+. .|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4556788888888888877753 445567777888888899999999888887753 4442 334444433
Q ss_pred CCHHHHH-HHHHhC--C-CCCCHHHHHH-HHHH--HHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 482 GHLKSAY-ELLNSM--P-VEPHASAWGA-LLGA--CKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 482 g~~~~A~-~~~~~~--~-~~p~~~~~~~-l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
+... ++|..- + .--.+..|.. ++.+ ....|+.++|..+-.++++..|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1121 222211 1 1112223433 3344 34579999999999999988777554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.14 E-value=4.2 Score=41.86 Aligned_cols=52 Identities=17% Similarity=0.074 Sum_probs=33.4
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMP 495 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (574)
|...|+++.|+.+-+++.. -.+-+-.+|..|+.+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4456677777777766664 233345667777777777777777776666663
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=87.77 E-value=14 Score=32.65 Aligned_cols=19 Identities=16% Similarity=0.171 Sum_probs=8.3
Q ss_pred CCCHhHHHHHHHHHHhCCC
Q 046956 292 DRDVVAWSALISGYAQNGQ 310 (574)
Q Consensus 292 ~~~~~~~~~li~~~~~~~~ 310 (574)
+++...-...+.++.+.|+
T Consensus 203 d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.28 E-value=5.2 Score=28.68 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=43.1
Q ss_pred CchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046956 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179 (574)
Q Consensus 116 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 179 (574)
+.-+..+-+..+......|+.....+.+++|.+.+++..|.++++-++..- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566666677777777888888888888888888888888887776553 333445666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.23 E-value=4.7 Score=38.08 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCcHHHHH
Q 046956 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN----VYAIVPSPEHYA 472 (574)
Q Consensus 401 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 472 (574)
..++..+...|+++++...+..+.... +-+...+..++.++.+.|+..+|++.|+.+.+ ..|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445666777788888888888777642 34566888888888888888888888877644 237777766544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.20 E-value=7.3 Score=32.25 Aligned_cols=46 Identities=4% Similarity=-0.112 Sum_probs=23.3
Q ss_pred HHHHHHHHHhC---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 046956 484 LKSAYELLNSM---PVE-PHASAWGALLGACKLYSDIELGELVANRLFEL 529 (574)
Q Consensus 484 ~~~A~~~~~~~---~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 529 (574)
..++.++|.-| ++. --+..|......+...|++.+|.++|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44555555444 222 22444445555555566666666666665553
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.35 E-value=19 Score=32.72 Aligned_cols=168 Identities=10% Similarity=0.035 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 267 YTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIF----SDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
|.++..=|.+.+++++|++++-. -...+.+.|+..-|.++. +-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44556778889999999887543 233455667765554443 555666888888888888887766
Q ss_pred cCCcch-HHHHHHHHH----HhC-CCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHH
Q 046956 343 VGNLDL-SNWVDSYLS----RSH-MDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQA 416 (574)
Q Consensus 343 ~~~~~~-a~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 416 (574)
....+- -..+.+.++ +.| .+...+.+...++..|.+.+++.+|+..|---.++.+..+..++--+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 554321 122333332 333 233333478889999999999999999885322333345544443333322211
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHh
Q 046956 417 VSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQN 460 (574)
Q Consensus 417 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 460 (574)
.++...-..++ -|.-.++...|..+++...+
T Consensus 185 ------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11112222223 35556788888887766554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.13 E-value=3.6 Score=31.31 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Q 046956 414 RQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVD 476 (574)
Q Consensus 414 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 476 (574)
-+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 355666677777788999999999999999999999999999999874 3444556776653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.12 E-value=28 Score=33.46 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHhh-cCCC--Cc--H
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSE--GLTPDE---VAFTIVLTACSHVGLVEDGWRFFEAMQNV-YAIV--PS--P 468 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--p~--~ 468 (574)
....|...|...|++.+|..++..+... |..+.. ..+...++.|...+++..|..++.++... .... |+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888999999999999987642 322221 35666777899999999999999887532 1222 22 2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (574)
..+...+..+...+++.+|.+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45667788888899999998877665
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.34 E-value=10 Score=27.04 Aligned_cols=81 Identities=15% Similarity=0.021 Sum_probs=59.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 227 (574)
.....++|..+-+.+...|- ...+--.-+..+.+.|++++|..+.+...-||...|-+|..+ +.|..+++...+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44577888888888877653 222333334567789999999999999999999999877654 77888888887766
Q ss_pred cCCCC
Q 046956 228 MPERS 232 (574)
Q Consensus 228 ~~~~~ 232 (574)
+...+
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 65543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.84 E-value=11 Score=26.96 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=59.9
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 046956 148 HVLSVREGTAIHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDL 227 (574)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 227 (574)
.....++|..+-+.+...|- ...+--.-+..+.+.|++++|..+.+...-||...|-+|..+ +.|..+++...+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44577888888888877653 222333334567789999999999999999999999877664 67888888887766
Q ss_pred cCCCC
Q 046956 228 MPERS 232 (574)
Q Consensus 228 ~~~~~ 232 (574)
+...+
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 65544
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=82.44 E-value=13 Score=29.16 Aligned_cols=49 Identities=6% Similarity=-0.008 Sum_probs=30.1
Q ss_pred HHHHHHHHHhh--CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 046956 519 GELVANRLFEL--EPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLRK 567 (574)
Q Consensus 519 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (574)
+..+|..+... .-..+..|...+..+...|++++|.++++.-++++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55566665553 34455566666666667777777777776666655544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.00 E-value=9.4 Score=29.10 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=44.1
Q ss_pred chHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046956 117 FIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179 (574)
Q Consensus 117 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 179 (574)
.-+..+-++.+......|+.....+.+++|.+.+++..|.++|+-++.+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455666667777778888888888888888888888888888776653 344556666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 574 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 37/284 (13%), Positives = 69/284 (24%), Gaps = 12/284 (4%)
Query: 274 YAKVGDMTSARSLFEAA----PDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPD 329
+ GD +A PD + L S + Q + D + + +N P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL 65
Query: 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELF 389
S + + + I + A
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 390 ETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVE 449
+ + G + GR + + + P+ L +
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN--AQG 183
Query: 450 DGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLKSAYELLNSMP--VEPHASAWGAL 506
+ W + + P+ + Y + ++L A HA G L
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 507 LGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
I+L R EL+P +Y L+N
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.002
Identities = 53/348 (15%), Positives = 107/348 (30%), Gaps = 18/348 (5%)
Query: 216 GDLVEAKTVFD----LMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERN---VVSYT 268
GD A+ P+ + V L + L + ++N +Y+
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGV-LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 269 TMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQP 328
+ + Y + G + A + A I+ A + S
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 329 DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAEL 388
+ V L YL + A + L + G + A
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 389 FE---TMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHV 445
FE T+ + +Y ++ L +AV+ + R LS V +
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC-VYYEQ 250
Query: 446 GLVEDGWRFFEAMQNVYAIVP-SPEHYACMVDLLGRTGHLKSAYELLN-SMPVEPHASAW 503
GL++ + + P P+ Y + + L G + A + N ++ + P +
Sbjct: 251 GLIDLAIDTYR---RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Query: 504 GALLGACKLY-SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRW 550
L K +IE + + E+ P+ A ++ L+++ +
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.31 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.17 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.0 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.84 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.84 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.77 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.74 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.67 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.65 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.49 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.45 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.44 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.35 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.33 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.3 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.21 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.21 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.2 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.07 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.01 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.82 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.81 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.68 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.61 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.5 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.61 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.57 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.11 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.54 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.5 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.2 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.35 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.75 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.89 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.7e-23 Score=197.04 Aligned_cols=245 Identities=13% Similarity=0.109 Sum_probs=188.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhH
Q 046956 298 WSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNA 377 (574)
Q Consensus 298 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (574)
...........+....+...+....... +-+...+..+...+...|+.+.|...+....+..+.. ...+..++..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~ 214 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCccc--HHHHHHHhhhhh
Confidence 3334444455555555555555554432 2234555555566666666666666666666554332 225667777777
Q ss_pred hcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 046956 378 KCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWR 453 (574)
Q Consensus 378 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~ 453 (574)
..|++++|...++... ..+...+..+...+...|++++|+..|++..+. .|+ ..++..+...+...|++++|.+
T Consensus 215 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~ 292 (388)
T d1w3ba_ 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7788888877777655 345567778888899999999999999999884 554 5688899999999999999999
Q ss_pred HHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 046956 454 FFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEP 531 (574)
Q Consensus 454 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 531 (574)
.++.... ..+.+...+..++..+...|++++|++.++++ ...|+ ..++..+...+...|++++|+..++++++++|
T Consensus 293 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 293 CYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999887 55667788899999999999999999999986 56664 66788888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCC
Q 046956 532 QNAGSYVLLSNIYATADR 549 (574)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~ 549 (574)
+++.++..|+.+|.+.||
T Consensus 371 ~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 371 TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.8e-21 Score=187.33 Aligned_cols=348 Identities=14% Similarity=0.089 Sum_probs=262.0
Q ss_pred HHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHccCChHHHHHHHhc---CCCCchhHHHHHHHHHHhcCChHHHHH
Q 046956 212 YASVGDLVEAKTVFDLMPE--R-SNVSWNALIGGLVKIGDLRSARQLFDE---MPERNVVSYTTMIDGYAKVGDMTSARS 285 (574)
Q Consensus 212 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (574)
+.+.|++++|++.|+++.+ | +...+..+...+.+.|++++|...++. ..+.+..++..+...|.+.|++++|+.
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc
Confidence 3344444444444444432 1 233344444444445555555544442 213456678888888888999999988
Q ss_pred HHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCC
Q 046956 286 LFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMD 362 (574)
Q Consensus 286 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (574)
.+..... .+...+..........+....+............ ................+....+...+.......+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T d1w3ba_ 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhccCcc
Confidence 8876653 3444555555666666777777766666655433 33444444555666677777777777777766544
Q ss_pred CChhhHHHHHHHHhHhcCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 363 LSRAHVIAALVDMNAKCGNMDRAAELFETMP--N-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVL 439 (574)
Q Consensus 363 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 439 (574)
... .+..++..+...|++++|...+++.. . .+...|..+...+...|++++|+..+++....+ +.+...+..+.
T Consensus 168 ~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 244 (388)
T d1w3ba_ 168 FAV--AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp CHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhH--HHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHH
Confidence 332 68889999999999999999998776 2 456789999999999999999999999998854 44566888889
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 046956 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIE 517 (574)
Q Consensus 440 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~ 517 (574)
..+.+.|++++|...|+++.+ ..+.+...+..++.++...|++++|.+.++.. ....+...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHH
Confidence 999999999999999999987 44556788999999999999999999999887 23346777888889999999999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
+|+..++++++.+|+++.++..++.+|...|++++|...++++.+..+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999987553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=9.3e-15 Score=136.08 Aligned_cols=241 Identities=13% Similarity=0.006 Sum_probs=128.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHh
Q 046956 299 SALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAK 378 (574)
Q Consensus 299 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 378 (574)
-.....+.+.|++++|+..|+++.+.. +-+...|..+..++...|+++.|...+..+.+..+.. ...+..++..|..
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~ 99 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN--QTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc--ccccccccccccc
Confidence 346677888899999999999888763 3356677778888888888888888888887765433 2267777777777
Q ss_pred cCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 379 CGNMDRAAELFETMPN--RDVV-SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 379 ~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
.|++++|.+.++.... |+.. .+........ ..+.......+..+...+.+.+|...+
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 7888777777766542 1110 0000000000 000000000111122223344444444
Q ss_pred HHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 456 EAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
.++.+......+...+..++..+...|++++|++.+++. ...| +...|..+...+...|++++|++.++++++.+|++
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 444432122223344444555555555555555555544 2222 23444444555555555555555555555555555
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 534 AGSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
+.++..++.+|...|++++|...|++.++
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.3e-14 Score=135.10 Aligned_cols=268 Identities=12% Similarity=0.007 Sum_probs=200.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC---CCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046956 268 TTMIDGYAKVGDMTSARSLFEAAPD---RDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG 344 (574)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 344 (574)
-.....+.+.|++++|+..|+++.+ .+..+|..+..++...|++++|...|.+..+.. +-+...+..+...+...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3567788999999999999998754 357889999999999999999999999998763 335778888889999999
Q ss_pred CcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046956 345 NLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRML 424 (574)
Q Consensus 345 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 424 (574)
++++|...+..+.......... ......... ..+.......+..+...+.+.+|...+.+..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHL--VTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGG--CC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHH--HHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999988765443221 100000000 0011111112233445567788888888887
Q ss_pred HCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 046956 425 SEGL-TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HAS 501 (574)
Q Consensus 425 ~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 501 (574)
+... .++...+..+...+...|++++|...++++... .+-+...|..++.+|...|++++|.+.++++ ...| +..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 6421 234567888888999999999999999999873 3445788999999999999999999999987 4455 467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----------hHHHHHHHHHhcCCchHHHHH
Q 046956 502 AWGALLGACKLYSDIELGELVANRLFELEPQNAG-----------SYVLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 502 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~a~~~ 556 (574)
.|..+..+|...|++++|+..|+++++++|++.. .+..+..++...|+.+.+...
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888999999999999999999999999888765 345677777778887765443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=4.2e-10 Score=105.37 Aligned_cols=161 Identities=16% Similarity=0.073 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC-----cHHHH
Q 046956 401 CSMIKGLSIHGHGRQAVSLFDRMLSEGL----TPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP-----SPEHY 471 (574)
Q Consensus 401 ~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~ 471 (574)
..+...+...|+++.+...+.+...... .....++......+...++...+...+.+......-.. ....+
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 3344455555555555555555443211 11112333444444555555555555544433211111 01223
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCchhHHH
Q 046956 472 ACMVDLLGRTGHLKSAYELLNSM-PVEP-----HASAWGALLGACKLYSDIELGELVANRLFEL------EPQNAGSYVL 539 (574)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~ 539 (574)
..+...+...|++++|...+++. ...| ....+..+...+...|++++|...+++++.. .|....++..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 34444555555666666555554 1111 1223333445555566666666666555532 2333445555
Q ss_pred HHHHHHhcCCchHHHHHHHHHH
Q 046956 540 LSNIYATADRWLDVCLVRSKMK 561 (574)
Q Consensus 540 l~~~~~~~g~~~~a~~~~~~~~ 561 (574)
++.+|...|++++|.+.+++..
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666666666555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=4.8e-11 Score=109.30 Aligned_cols=226 Identities=11% Similarity=0.070 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcC-CHHHHHHHHhhCC---CCChhHHHHHHH
Q 046956 330 EFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCG-NMDRAAELFETMP---NRDVVSYCSMIK 405 (574)
Q Consensus 330 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~ 405 (574)
...+..+...+.+.+..++|...++.+++.++.... +|+..+.++...| ++++|+..++.+. ..+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~--a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT--VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence 345566666777888889999999999887655444 6788888887766 4889999888876 246678888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC-
Q 046956 406 GLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH- 483 (574)
Q Consensus 406 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~- 483 (574)
.+...|++++|+..++++++. .| +...|..+...+.+.|++++|+..++++++. -+-+...|+.+..++.+.|.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHcccc
Confidence 888899999999999998884 44 4568888888888899999999999998873 33456777777776665554
Q ss_pred -----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhc--CCchH
Q 046956 484 -----LKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQN--AGSYVLLSNIYATA--DRWLD 552 (574)
Q Consensus 484 -----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~ 552 (574)
+++|++.+.++ ...| +...|..+...+.. ...+++...+++++++.|+. +..+..++.+|... ++.+.
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 57788777766 4455 45666666555544 44577888888888887654 44556677776543 66677
Q ss_pred HHHHHHHHHh
Q 046956 553 VCLVRSKMKE 562 (574)
Q Consensus 553 a~~~~~~~~~ 562 (574)
+...+++..+
T Consensus 276 ~~~~~~ka~~ 285 (315)
T d2h6fa1 276 KEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=3.9e-11 Score=107.03 Aligned_cols=221 Identities=11% Similarity=-0.013 Sum_probs=116.5
Q ss_pred CchHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHH
Q 046956 310 QPDEAVKIFSDMCSKNVQP---DEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAA 386 (574)
Q Consensus 310 ~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 386 (574)
+.+.++.-+++........ ...++..+..+|.+.|++++|...|+..++..+... .++..++.+|.+.|++++|+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~--~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH--HHHhhhchHHHHHHHHHHhh
Confidence 4456666666666542111 123555556667777777777777777776544332 25667777777777777777
Q ss_pred HHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcC
Q 046956 387 ELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYA 463 (574)
Q Consensus 387 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 463 (574)
+.|+++.+ .+..+|..+..+|...|++++|...|++.++.. +.+......+..++.+.+..+.+..+.......
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-- 168 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--
Confidence 77776652 234566667777777777777777777766632 223333333333444445444444444444331
Q ss_pred CCCcHHHHHHHHHHHhhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 046956 464 IVPSPEHYACMVDLLGRTGH----LKSAYELLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSY 537 (574)
Q Consensus 464 ~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 537 (574)
.++...+. ++..+..... .+.+...+... ...|+ ..++..+...+...|++++|+..|++++..+|++...|
T Consensus 169 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 169 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred -chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 11111122 1222221111 22222221111 11122 23444555666777777777777777777777665433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=4.7e-10 Score=102.56 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=167.5
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 295 VVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVG-NLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 295 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
..+|+.+...+.+.+.+++|+.+++++++.+ +-+...|.....++...| ++++|...++.+.+..+.... ++..++
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~--a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ--VWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH--HHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh--HHHHHh
Confidence 4577888888999999999999999999863 335667777777877766 489999999999988766554 788999
Q ss_pred HHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC---
Q 046956 374 DMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVG--- 446 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g--- 446 (574)
..+.+.|++++|++.++++.+ .+...|..+...+...|++++|+..++++++. .| +...|+.+...+.+.+
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence 999999999999999999873 56789999999999999999999999999994 55 4557776666555444
Q ss_pred ---cHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh--cCCHH
Q 046956 447 ---LVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PVEPHASAWGALLGACKL--YSDIE 517 (574)
Q Consensus 447 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~--~~~~~ 517 (574)
.+++|+..+.++.+ ..+.+...|..+...+...| .+++.+.++.. +...+...+..+...|.. .++.+
T Consensus 198 ~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 47889999999887 34456778887777766544 45666655544 222344455555544432 24444
Q ss_pred HHHHHHHHHHh
Q 046956 518 LGELVANRLFE 528 (574)
Q Consensus 518 ~a~~~~~~~~~ 528 (574)
.+...++++++
T Consensus 275 ~~~~~~~ka~~ 285 (315)
T d2h6fa1 275 NKEDILNKALE 285 (315)
T ss_dssp SHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=4.1e-09 Score=98.42 Aligned_cols=287 Identities=10% Similarity=-0.008 Sum_probs=181.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--C-C-----HhHHHHHHHHHHhCCCchHHHHHHHHHHHCC----CCC-CHHHHHHH
Q 046956 270 MIDGYAKVGDMTSARSLFEAAPD--R-D-----VVAWSALISGYAQNGQPDEAVKIFSDMCSKN----VQP-DEFILVSL 336 (574)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~~~~--~-~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p-~~~~~~~l 336 (574)
....+...|++++|++++++..+ | + ..++..+..+|...|++++|+..|++..+.. ..+ ....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34555666777777776655321 1 1 2345566667777777777777777665421 111 12334445
Q ss_pred HHHHhccCCcchHHHHHHHHHHh----CCC--CChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--------CChhHHHH
Q 046956 337 MSACSQVGNLDLSNWVDSYLSRS----HMD--LSRAHVIAALVDMNAKCGNMDRAAELFETMPN--------RDVVSYCS 402 (574)
Q Consensus 337 l~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ 402 (574)
...+...|++..+...+...... ... +.....+..+...+...|+++.+...+..... .....+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 55666677777777766655432 111 11222455667778888888888887766541 12345566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC--cHHHHHHH
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSE--GLTPDE----VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP--SPEHYACM 474 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l 474 (574)
+...+...++..++...+.+.... ...... ..+..+...+...|++++|...++.........+ ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 667777888888888888776542 111111 2455566678888999999999988765311111 23456678
Q ss_pred HHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---------CchhH
Q 046956 475 VDLLGRTGHLKSAYELLNSM-------PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQ---------NAGSY 537 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---------~~~~~ 537 (574)
..++...|++++|.+.++++ +..|+ ...+..+...+...|++++|++.+++++++.+. ....+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 88999999999999988875 23333 345666678899999999999999999887432 12234
Q ss_pred HHHHHHHHhcCCchHHHHH
Q 046956 538 VLLSNIYATADRWLDVCLV 556 (574)
Q Consensus 538 ~~l~~~~~~~g~~~~a~~~ 556 (574)
..+...+...++.+++.+-
T Consensus 338 ~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHH
Confidence 4555667777888877654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=3.8e-11 Score=111.63 Aligned_cols=262 Identities=7% Similarity=-0.131 Sum_probs=188.6
Q ss_pred hcCChHHHHHHHhhCCC--C-CHhHHHHHHHH----------HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046956 276 KVGDMTSARSLFEAAPD--R-DVVAWSALISG----------YAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQ 342 (574)
Q Consensus 276 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~----------~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 342 (574)
+.+..++|+++++++.+ | +...|+..-.. +...|++++|+..++...+.. +-+...+..+..++..
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 33344778888876653 3 33445443322 233455788999999988753 3356666666666666
Q ss_pred cCC--cchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHH
Q 046956 343 VGN--LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN---RDVVSYCSMIKGLSIHGHGRQAV 417 (574)
Q Consensus 343 ~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 417 (574)
.+. ++++...+..+.+........ .+......+...|.+++|...++.+.+ .+...|+.+...+...|++++|.
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHC-WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhh-hhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 554 678888999988876655443 445666788889999999999998884 46678999999999999998887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 046956 418 SLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PV 496 (574)
Q Consensus 418 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 496 (574)
..+.+..+ +.|+.. .....+...+..+++...+..... ..+++...+..++..+...|+.++|.+.+.+. ..
T Consensus 199 ~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 199 PQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66655444 223222 222334455666777888877776 44455566677788888899999999999877 55
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 497 EPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 497 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
.|+ ...+..+...+...|++++|+..++++++++|++...|..|+..+..
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 564 45667777899999999999999999999999999999988877664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=3.5e-10 Score=100.73 Aligned_cols=195 Identities=11% Similarity=-0.034 Sum_probs=138.9
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 046956 367 HVIAALVDMNAKCGNMDRAAELFETMP---NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTAC 442 (574)
Q Consensus 367 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~ 442 (574)
.++..++..|.+.|++++|.+.|++.. ..++.+|+.+..+|...|++++|+..|+++++. .|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence 367788899999999999999999877 246788999999999999999999999999984 454 45788888889
Q ss_pred hccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH----HhcCCHH
Q 046956 443 SHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGAC----KLYSDIE 517 (574)
Q Consensus 443 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~----~~~~~~~ 517 (574)
...|++++|...+++..+. .+.+......+...+.+.+..+.+..+.... ...+....+. ++..+ ...+..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 9999999999999998874 3334444444555556666555544444333 1111211221 11222 1223345
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 518 LGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
.+...+.......|....++..++.+|...|++++|...|++.++.++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 5555555555667777888999999999999999999999998876653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=4.5e-09 Score=95.83 Aligned_cols=186 Identities=11% Similarity=0.108 Sum_probs=130.8
Q ss_pred cchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCCC--C-C-hhHHHHHHHHHHHcCChHHHHHHHH
Q 046956 346 LDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMPN--R-D-VVSYCSMIKGLSIHGHGRQAVSLFD 421 (574)
Q Consensus 346 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~a~~~~~ 421 (574)
.+.+..++++.++...+.+.. ++...+..+.+.|+++.|..+|+.+.+ | + ..+|...+..+.+.|+.+.|..+|+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~-l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNML-LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 356677777777654443443 677777788888888888888887653 2 2 3467788888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 046956 422 RMLSEGLTPDEVAFTIVLTA-CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM----PV 496 (574)
Q Consensus 422 ~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 496 (574)
++.+.+ +.+...|...+.. +...|+.+.|..+|+.+.. ..+.+...|...++.+.+.|+.+.|..+|++. +.
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~--~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 887753 2333344443332 3345788888888888887 34556777888888888888888888888876 22
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 046956 497 EP--HASAWGALLGACKLYSDIELGELVANRLFELEPQNAG 535 (574)
Q Consensus 497 ~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 535 (574)
.| ....|...+..-...|+.+.+..+++++.+..|....
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 33 2456777777777888888888888888888776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=7.2e-09 Score=94.48 Aligned_cols=183 Identities=8% Similarity=0.040 Sum_probs=145.3
Q ss_pred CCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046956 380 GNMDRAAELFETMP----NRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFF 455 (574)
Q Consensus 380 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 455 (574)
+..++|..+|++.. ..+...|...+..+...|+.+.|..+|+++++.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44577788887654 24566788888999999999999999999998532222447889999999999999999999
Q ss_pred HHhHhhcCCCCcHHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 456 EAMQNVYAIVPSPEHYACMVDL-LGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 456 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
+++.+ ..+.+...|...+.. +...|+.+.|.++|+.+ ...| +...|...+..+...|+++.|..+|+++++..|.
T Consensus 158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99987 344455666655554 34568999999999988 2233 5778999999999999999999999999998776
Q ss_pred Cch----hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 533 NAG----SYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 533 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
++. +|...+..-...|+.+.+..+++++.+.-
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 554 67778887788999999999999887644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=2.1e-10 Score=106.43 Aligned_cols=254 Identities=8% Similarity=-0.075 Sum_probs=174.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHH-HHHH---HHHHHhc-------cCCcchHHHHHHHHHHhCCCCChhhHH
Q 046956 301 LISGYAQNGQPDEAVKIFSDMCSKNVQPDEF-ILVS---LMSACSQ-------VGNLDLSNWVDSYLSRSHMDLSRAHVI 369 (574)
Q Consensus 301 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~---ll~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 369 (574)
++......+..++|++++++..+. .|+.. .|+. ++..... .|.++++..+++.+.+.++.... .+
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~--~~ 110 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--TW 110 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH--HH
Confidence 333334444568999999999875 45543 3322 2222222 34467788888888877655444 46
Q ss_pred HHHHHHhHhcC--CHHHHHHHHhhCCC---CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046956 370 AALVDMNAKCG--NMDRAAELFETMPN---RDVVSYCS-MIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACS 443 (574)
Q Consensus 370 ~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 443 (574)
..++.++...+ ++++|...++++.+ ++...|.. ....+...+.+++|+..++++++.. +-+...|..+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 66666666555 57889888888752 34555543 4466777889999999999888743 234558888888888
Q ss_pred ccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 046956 444 HVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 444 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
..|++++|...++..... .|+ . ..+...+...+..+++...+.+. ...| +...+..+...+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~---~~~--~-~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV---LLK--E-LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH---HHH--H-HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh---HHH--H-HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 888888776666555432 111 1 12333445566666777766655 2222 33344555667778899999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 522 VANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.+.++++.+|.+..++..++.+|...|++++|.+.++++.+.++
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999987654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.9e-08 Score=76.30 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=61.8
Q ss_pred HHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 046956 439 LTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDI 516 (574)
Q Consensus 439 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 516 (574)
...+...|++++|+..|+++++ ..+.+...|..++.+|...|++++|+..++++ ...| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3445556666666666666665 23334555666666666666666666666555 2222 455566666666666666
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHH
Q 046956 517 ELGELVANRLFELEPQNAGSYVLLSNI 543 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (574)
++|+..++++++++|+++.++..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666666666666666666666665554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.1e-08 Score=76.13 Aligned_cols=94 Identities=10% Similarity=0.057 Sum_probs=85.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 472 ACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
..-+..+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.++...|+
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34577889999999999999998 4455 577888899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCC
Q 046956 550 WLDVCLVRSKMKERGL 565 (574)
Q Consensus 550 ~~~a~~~~~~~~~~~~ 565 (574)
+++|...+++..+..+
T Consensus 87 ~~~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999987654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=9.1e-08 Score=79.78 Aligned_cols=140 Identities=8% Similarity=-0.066 Sum_probs=100.0
Q ss_pred HHHhHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 046956 373 VDMNAKCGNMDRAAELFETMPNRDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDG 451 (574)
Q Consensus 373 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a 451 (574)
+..+...|+++.|++.|..+..++..+|..+..+|...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 666778899999999999988888888999999999999999999999999884 454 45888888889999999999
Q ss_pred HHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 452 WRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPH-ASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 452 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
...|++.... .+.+... .+...|. ..+.+ ..++..+..++...|++++|++.+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999888752 2222100 0000000 00111 2344455666777777777777777777777
Q ss_pred CCC
Q 046956 531 PQN 533 (574)
Q Consensus 531 p~~ 533 (574)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=1.3e-08 Score=86.33 Aligned_cols=117 Identities=6% Similarity=-0.155 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 046956 430 PDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH-ASAWGALL 507 (574)
Q Consensus 430 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 507 (574)
|+...+......+.+.|++++|+..|++++. ..+.+...|..++.+|.+.|++++|++.|+++ ...|+ ...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 5666667777778888888888888887776 33455677777788888888888888887776 55563 55677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 508 GACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 508 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
.++...|++++|+..+++++++.|++...+...+..+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 77788888888888888887777765555544444444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=6.5e-08 Score=87.06 Aligned_cols=192 Identities=10% Similarity=0.039 Sum_probs=112.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--H
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSIHGHGRQAVSLFDRMLSE----GLTPD--E 432 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~ 432 (574)
.|...+..|...|++++|.+.|.++.+ .+ ..+|..+..+|.+.|++++|...+++..+. | .+. .
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~ 117 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-QFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc-cchhHH
Confidence 455556667777777777777766542 11 246777777777888888888777765542 1 111 2
Q ss_pred HHHHHHHHHHh-ccCcHHHHHHHHHHhHhhc---CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CC----C
Q 046956 433 VAFTIVLTACS-HVGLVEDGWRFFEAMQNVY---AIVPS-PEHYACMVDLLGRTGHLKSAYELLNSM-PV---EP----H 499 (574)
Q Consensus 433 ~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~ 499 (574)
.++..+...|. ..|++++|.+.++++.+.. +.++. ..++..++..+...|++++|++.++++ .. .+ .
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 34555555554 3588888888887765421 11111 345667777888888888888888775 11 11 1
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hHHHHHHHHHh--cCCchHHHHHHHHH
Q 046956 500 A-SAWGALLGACKLYSDIELGELVANRLFELEPQNAG-----SYVLLSNIYAT--ADRWLDVCLVRSKM 560 (574)
Q Consensus 500 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~~ 560 (574)
. ..+...+..+...|+++.|...++++.+.+|..+. ....|+.++.. .+.+++|...|+++
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 12233444556778888888888888887765332 33445555443 23466776666544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=7.5e-08 Score=77.73 Aligned_cols=119 Identities=6% Similarity=-0.034 Sum_probs=94.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 046956 436 TIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLY 513 (574)
Q Consensus 436 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 513 (574)
......|.+.|++++|+..|+++.+. .+.+...|..++.+|...|++++|++.|+++ ...| +...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 33455678888999999999888873 3456788888888999999999999998887 4455 457888888999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH--hcCCchHHHHH
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYA--TADRWLDVCLV 556 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 556 (574)
|++++|+..++++++++|+++.++..+..+.. ..+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998888776643 34456666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.74 E-value=2.4e-08 Score=75.02 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=80.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 046956 472 ACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADR 549 (574)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (574)
..++..+.+.|++++|+..|+++ ...| +...|..+..++.+.|++++|+..++++++++|+++.++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677788999999999999987 4455 577888889999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH
Q 046956 550 WLDVCLVRSKMK 561 (574)
Q Consensus 550 ~~~a~~~~~~~~ 561 (574)
+++|.+.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.1e-07 Score=79.22 Aligned_cols=122 Identities=9% Similarity=-0.051 Sum_probs=91.3
Q ss_pred HHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 046956 440 TACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIE 517 (574)
Q Consensus 440 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 517 (574)
..+...|+++.|++.|.++ .+|++.+|..++.+|...|++++|++.|++. ...| +...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 3456677777777777653 2456667777777888888888888887776 4444 4667777778888888888
Q ss_pred HHHHHHHHHHhhCCCCc----------------hhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 518 LGELVANRLFELEPQNA----------------GSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 518 ~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
+|+..|+++++..|.+. .++..++.+|...|++++|.+.+++..+....
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 88888888887655432 45778999999999999999999988765543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=2.1e-08 Score=84.85 Aligned_cols=97 Identities=9% Similarity=-0.078 Sum_probs=77.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHH
Q 046956 395 RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACM 474 (574)
Q Consensus 395 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 474 (574)
|+...+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++++ -.+-+...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 455666777888889999999999999888843 33455788888889999999999999998874 223346788888
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 046956 475 VDLLGRTGHLKSAYELLNSM 494 (574)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~ 494 (574)
+.+|.+.|++++|+..|+++
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999888876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=2.5e-07 Score=83.14 Aligned_cols=164 Identities=9% Similarity=-0.033 Sum_probs=98.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHH-cCChHHHHHHHHHHHH----CCCCCCH-
Q 046956 368 VIAALVDMNAKCGNMDRAAELFETMPN-----RD----VVSYCSMIKGLSI-HGHGRQAVSLFDRMLS----EGLTPDE- 432 (574)
Q Consensus 368 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~-~~~~~~a~~~~~~m~~----~g~~p~~- 432 (574)
.|..++.+|.+.|++++|.+.++...+ .+ ..++..+...|.. .|++++|+..+++..+ .+..+..
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 555566666666666666666655431 11 2345556666644 5888888888887654 2212222
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCC----c-HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC------H
Q 046956 433 VAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVP----S-PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPH------A 500 (574)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~ 500 (574)
.++..+...+...|++++|...|+++.......+ . ...+...+..+...|+++.|.+.+++. ...|. .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 3677778888888999999999888876411111 1 123344555667788999999888887 33332 2
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHhhCC
Q 046956 501 SAWGALLGACKL--YSDIELGELVANRLFELEP 531 (574)
Q Consensus 501 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p 531 (574)
.....++.++.. .+.+++|+..|+++.+++|
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 234455555544 2347777777776555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=5.8e-08 Score=73.71 Aligned_cols=107 Identities=20% Similarity=0.030 Sum_probs=83.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 046956 437 IVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGH---LKSAYELLNSM-PVEPHA---SAWGALLGA 509 (574)
Q Consensus 437 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~~ 509 (574)
.+++.+...+++++|.+.|++... .-+.++.++..++.++.+.++ +++|+++++++ ...|++ .++..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 466777788888888888888887 445567888888888876554 45688888886 444443 367778899
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 046956 510 CKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYA 545 (574)
Q Consensus 510 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (574)
|.+.|++++|++.|+++++++|++..+...+..+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999988877765543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1e-07 Score=76.97 Aligned_cols=95 Identities=11% Similarity=0.002 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
+...+..|.+.|++++|+..|+++ ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 444567889999999999999988 4455 57788888899999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 046956 549 RWLDVCLVRSKMKERGL 565 (574)
Q Consensus 549 ~~~~a~~~~~~~~~~~~ 565 (574)
++++|...+++..+...
T Consensus 93 ~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKP 109 (159)
T ss_dssp CHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 99999999999987553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.7e-07 Score=75.15 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
.+......+.+.|++++|+..|.+.++. -|... +..+.-......+ ...+|+.++.+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYES------------SFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcc------------ccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 4445566677777777777777776652 11100 0000000111111 123577788899
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHH
Q 046956 479 GRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDV 553 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 553 (574)
.+.|++++|+..++++ ...| +...+..+..++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4456 6778888889999999999999999999999999999999999887766655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=1.9e-05 Score=69.38 Aligned_cols=228 Identities=11% Similarity=0.002 Sum_probs=135.9
Q ss_pred CHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHH
Q 046956 294 DVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALV 373 (574)
Q Consensus 294 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 373 (574)
|+..+..|...+...+++++|++.|++..+.| +...+..+...|.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~---------------------------- 49 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQG---------------------------- 49 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS----------------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC----------------------------
Confidence 34566667777777777888888877777665 33333334333332100
Q ss_pred HHhHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH----Hhc
Q 046956 374 DMNAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSI----HGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTA----CSH 444 (574)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~----~~~ 444 (574)
...+...|...+....+ .+......+...+.. .++.+.|...++...+.|.. .. ...+... ...
T Consensus 50 ----~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a--~~~l~~~~~~~~~~ 122 (265)
T d1ouva_ 50 ----VEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-EG--CASLGGIYHDGKVV 122 (265)
T ss_dssp ----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HH--HHHHHHHHHHCSSS
T ss_pred ----cchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhh-hH--HHhhcccccCCCcc
Confidence 02233344444333321 222333333333322 35667777777777775522 11 1222222 223
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 046956 445 VGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR----TGHLKSAYELLNSMPVEPHASAWGALLGACKL----YSDI 516 (574)
Q Consensus 445 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 516 (574)
......+...+..... ..+...+..+...|.. ..+...+...++......+......+...+.. ..++
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 4456667777766554 2345566666666654 45667777777766333466666666656654 5689
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 046956 517 ELGELVANRLFELEPQNAGSYVLLSNIYAT----ADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 565 (574)
+.|+..|+++.+. .++.++..|+.+|.. ..+.++|.++|++..+.|-
T Consensus 199 ~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999999999887 457788999999886 4489999999999887764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=7e-07 Score=72.60 Aligned_cols=113 Identities=9% Similarity=-0.070 Sum_probs=80.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046956 434 AFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLY 513 (574)
Q Consensus 434 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 513 (574)
.+......+.+.|++++|+..|.+++......+.... ........+ ...++..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~~~~~-------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQKAQAL-------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhhhchh-------HHHHHHHHHHHHHhh
Confidence 3444555667777777777777776653111111000 000000000 123566677889999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|++++|+..++++++++|+++.++..++.+|...|++++|...|++..+.++
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999987654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.45 E-value=1.9e-06 Score=69.82 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
..|..+..+|.+.|++++|+..++++ ...| +...+..+..++...|++++|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45667888999999999999999887 4344 577888888999999999999999999999999999999999888777
Q ss_pred cCCch-HHHHHHHHHHh
Q 046956 547 ADRWL-DVCLVRSKMKE 562 (574)
Q Consensus 547 ~g~~~-~a~~~~~~~~~ 562 (574)
.+... ...+++.+|-+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 66554 35555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.44 E-value=1.1e-06 Score=71.42 Aligned_cols=132 Identities=7% Similarity=-0.034 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 479 (574)
+......+...|++++|+..|.++++. .+.. ....... .... --+.....|..+..++.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~----------~~~~~~~-------~~~~--~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDA-------DGAK--LQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHH-------HHGG--GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh----------hhhhhhH-------HHHH--hChhhHHHHHHHHHHHH
Confidence 445566677778888888777776541 0000 0000000 0000 01123566778889999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchH
Q 046956 480 RTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLD 552 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (574)
+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|++..+...+..+........+
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 5566 467888888999999999999999999999999999999888887765544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.35 E-value=2.6e-06 Score=67.69 Aligned_cols=127 Identities=8% Similarity=-0.087 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHH
Q 046956 399 SYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLL 478 (574)
Q Consensus 399 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 478 (574)
.+...+..+.+.|++.+|+..|.+.+.. .+... ........ .... .....+|..++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~---~~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILL---DKKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHH---HHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHH---Hhhh-----hHHHHHHhhHHHHH
Confidence 4555666677777777777777776652 11100 00000000 0000 01224667788888
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 479 GRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
.+.|++++|++.++++ ...| +..+|..+..++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888876 4445 567888888888888888888888888888888888887777665443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=6.3e-08 Score=94.24 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 046956 468 PEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYAT 546 (574)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (574)
...+..+...+.+.|+.++|...++.. ...| ..++..++..+...|++++|+..|+++++++|++...|+.||.++..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp -----------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344555555566666666665544433 1111 23444555566666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHHh
Q 046956 547 ADRWLDVCLVRSKMKE 562 (574)
Q Consensus 547 ~g~~~~a~~~~~~~~~ 562 (574)
.|++.+|...|.+...
T Consensus 199 ~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIA 214 (497)
T ss_dssp TTCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6666666666665554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.1e-06 Score=67.55 Aligned_cols=92 Identities=11% Similarity=0.115 Sum_probs=67.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHHHH
Q 046956 471 YACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYSDIELGELVANRLFELEPQNAG-------SYVLLS 541 (574)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 541 (574)
+..++..+.+.|++++|++.|+++ ...| +...+..+..+|...|++++|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445667777778888888877776 3344 4667777778888888888888888888888777654 455566
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 046956 542 NIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 542 ~~~~~~g~~~~a~~~~~~~~~ 562 (574)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677777888888888877654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.33 E-value=3.1e-06 Score=67.18 Aligned_cols=65 Identities=11% Similarity=-0.091 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.++..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+-++
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 46677888999999999999999999999999999999999999999999999999999887553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=6.4e-07 Score=67.75 Aligned_cols=94 Identities=10% Similarity=-0.038 Sum_probs=78.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC--chhHHHHHHHH
Q 046956 472 ACMVDLLGRTGHLKSAYELLNSM-PVEP-HASAWGALLGACKLYS---DIELGELVANRLFELEPQN--AGSYVLLSNIY 544 (574)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 544 (574)
..++..+...+++++|.+.|++. ...| +..++..+..++.+.+ ++++|+.+++++++.+|.+ +.+++.|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999988 4444 5678888888887644 5567999999999988765 45899999999
Q ss_pred HhcCCchHHHHHHHHHHhCCC
Q 046956 545 ATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~~ 565 (574)
.+.|++++|.+.|+++.+.++
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhhHHHHHHHHHHHHhCc
Confidence 999999999999999988654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.24 E-value=0.00024 Score=61.96 Aligned_cols=96 Identities=18% Similarity=0.053 Sum_probs=66.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC-CCHhHHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046956 263 NVVSYTTMIDGYAKVGDMTSARSLFEAAPD-RDVVAWSALISGYAQ----NGQPDEAVKIFSDMCSKNVQPDEFILVSLM 337 (574)
Q Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 337 (574)
|+..+..|...+.+.+++++|++.|++..+ .+..++..|...|.. ..+...|...+......+. ......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccc
Confidence 566788888899999999999999998754 467777778888876 5678889888888877652 22222332
Q ss_pred HHHh----ccCCcchHHHHHHHHHHhCC
Q 046956 338 SACS----QVGNLDLSNWVDSYLSRSHM 361 (574)
Q Consensus 338 ~~~~----~~~~~~~a~~~~~~~~~~~~ 361 (574)
..+. ...+.+.+...+....+.+.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~ 105 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY 105 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh
Confidence 2222 23445566666666665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.23 E-value=7.1e-06 Score=66.29 Aligned_cols=65 Identities=9% Similarity=-0.040 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
..+..+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...|+++.+-++
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34566778889999999999999999999999999999999999999999999999999987653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=0.001 Score=59.15 Aligned_cols=283 Identities=11% Similarity=0.071 Sum_probs=146.8
Q ss_pred HHHhcCCChHHHHHHhhccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHH
Q 046956 78 LCHSLATPLSYSTAVFNRIVNPNTFLWNTLLKGYSQNSRFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTA 157 (574)
Q Consensus 78 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 157 (574)
..+.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+. -+..+|..+...|........+
T Consensus 22 ~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-- 88 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-- 88 (336)
T ss_dssp -------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH--
Confidence 666677888888888875543 777788888888888888877644 1556787788777766554432
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHcCCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcc
Q 046956 158 IHAAVIRWGVDEDVFVGTSLIDLYGKRKEISCARKVFDEMPE---RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNV 234 (574)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 234 (574)
.+...+...+......++..|-..|.+++...+++.... .+...++.++..|++.+ .++-++.++... +..
T Consensus 89 ---~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s--~~y 162 (336)
T d1b89a_ 89 ---QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFW--SRV 162 (336)
T ss_dssp ---HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS--TTS
T ss_pred ---HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhcc--ccC
Confidence 222223334555566788888888888888888886542 45567788888887764 445444444331 222
Q ss_pred hHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHH
Q 046956 235 SWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEA 314 (574)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 314 (574)
....+++.|.+.+-++++.-++..+ .........++.-....-+.+...+++.+.. |+..|-..+..|... +++-.
T Consensus 163 ~~~k~~~~c~~~~l~~elv~Ly~~~-~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~--N~e~~~~~i~~yL~~-~p~~i 238 (336)
T d1b89a_ 163 NIPKVLRAAEQAHLWAELVFLYDKY-EEYDNAIITMMNHPTDAWKEGQFKDIITKVA--NVELYYRAIQFYLEF-KPLLL 238 (336)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHT-TCHHHHHHHHHHSTTTTCCHHHHHHHHHHCS--STHHHHHHHHHHHHH-CGGGH
T ss_pred CHHHHHHHHHHcCChHHHHHHHHhc-CCHHHHHHHHHHcchhhhhHHHHHHHHHccC--ChHHHHHHHHHHHHc-CHHHH
Confidence 3334445555544444444444433 1111111111111111111122222222221 223333344444432 23333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCChhhHHHHHHHHhHhcCCHHHHHHHHhhCC
Q 046956 315 VKIFSDMCSKNVQPDEFILVSLMSACSQVGNLDLSNWVDSYLSRSHMDLSRAHVIAALVDMNAKCGNMDRAAELFETMP 393 (574)
Q Consensus 315 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 393 (574)
..++..+... +.| ..++..+.+.+++.....+++.....+. .. +.+++...|...++++.-++..+.-.
T Consensus 239 ~~lL~~v~~~-~d~-----~r~V~~~~k~~~l~li~p~Le~v~~~n~---~~-vn~al~~lyie~~d~~~l~~~i~~~~ 307 (336)
T d1b89a_ 239 NDLLMVLSPR-LDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNN---KS-VNESLNNLFITEEDYQALRTSIDAYD 307 (336)
T ss_dssp HHHHHHHGGG-CCH-----HHHHHHHHHTTCTTTTHHHHHHHHTTCC---HH-HHHHHHHHHHHTTCHHHHHHHHHHCC
T ss_pred HHHHHHhccC-CCH-----HHHHHHHHhcCCcHHHHHHHHHHHHcCh---HH-HHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 3333333221 111 2344445566666667777766555442 23 67778888888777665555554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=3.1e-06 Score=68.69 Aligned_cols=112 Identities=9% Similarity=-0.039 Sum_probs=80.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEP-HASAWGALLGACKLY 513 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~ 513 (574)
+......+...|++++|+..|.++.+. . + .........+. ....| ....+..+..++.+.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~-~----------~~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--V-E----------GSRAAAEDADG------AKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--H-H----------HHHHHSCHHHH------GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--h-h----------hhhhhhhhHHH------HHhChhhHHHHHHHHHHHHhh
Confidence 444555666777777777777766541 0 0 00000011110 01122 344667778889999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
|++++|+..++++++++|+++.+|..++.+|...|++++|...|+++.+..+
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999987553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.20 E-value=2.4e-06 Score=67.10 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=78.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc----------CcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHV----------GLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
|-+.+.+++|...|++.++. .|+ ..++..+..++... +.+++|+..|+++++ --+.+...|..++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHH
Confidence 44556677777777777773 444 34666666665533 334556666666664 2233345555555
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHH
Q 046956 476 DLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCL 555 (574)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 555 (574)
.+|...|++. ++... ..+++++|.+.|+++++++|++...+..|+.. .+|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 5554443221 11111 11246889999999999999999888888765 46677
Q ss_pred HHHHHHhCCC
Q 046956 556 VRSKMKERGL 565 (574)
Q Consensus 556 ~~~~~~~~~~ 565 (574)
++.++.++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=6.1e-06 Score=61.35 Aligned_cols=87 Identities=9% Similarity=-0.071 Sum_probs=53.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhc
Q 046956 403 MIKGLSIHGHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRT 481 (574)
Q Consensus 403 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 481 (574)
+...+.+.|++++|+..|++.++. .|+ ..+|..+..++.+.|++++|+..|+++.+ ..+.+...+..++.+|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHC
Confidence 445556666666666666666663 343 44666666666666666666666666665 2333456666666666666
Q ss_pred CCHHHHHHHHHh
Q 046956 482 GHLKSAYELLNS 493 (574)
Q Consensus 482 g~~~~A~~~~~~ 493 (574)
|++++|.+.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.0015 Score=58.09 Aligned_cols=135 Identities=12% Similarity=0.074 Sum_probs=71.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHccCChHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 046956 200 RNVVSWTAMIVGYASVGDLVEAKTVFDLMPERSNVSWNALIGGLVKIGDLRSARQLFDEMPERNVVSYTTMIDGYAKVGD 279 (574)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (574)
+|..--..+..-|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+..... .+..+|..+...+.+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKE 84 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcH
Confidence 444334455566667777777777777553 3555666677777777777776643 355567666776666655
Q ss_pred hHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046956 280 MTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFILVSLMSACSQV 343 (574)
Q Consensus 280 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 343 (574)
..-+.-+ ......+......++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus 85 ~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 85 FRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 5443221 1111223334455667777777777777777765432 244555666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=1.4e-05 Score=64.90 Aligned_cols=122 Identities=16% Similarity=0.028 Sum_probs=85.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046956 435 FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHL-KSAYELLNSMPVEPHASAWGALLGACKLY 513 (574)
Q Consensus 435 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 513 (574)
...........|++++|.+.|.+....+.-.+-.. + ..+.+ .....-++. .....+..+...+...
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------L-RDFQFVEPFATALVE----DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------C-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence 33444567788999999999999886422111100 0 00111 111111111 0234567778899999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCccCC
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKE-----RGLRKIP 569 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 569 (574)
|++++|+..++++++.+|.+...|..++.+|...|++++|.+.|+++.+ -|+.|.|
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999999999999999999999999999998753 4666544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.1e-05 Score=57.76 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 469 EHYACMVDLLGRTGHLKSAYELLNSM----P----VEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
..+-.++..+.+.|++++|++.|+++ + ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34445677777778887777777665 1 1222 5678888899999999999999999999999999999998
Q ss_pred HHHHH
Q 046956 540 LSNIY 544 (574)
Q Consensus 540 l~~~~ 544 (574)
+....
T Consensus 86 l~~~~ 90 (95)
T d1tjca_ 86 LKYFE 90 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=3.3e-05 Score=58.84 Aligned_cols=105 Identities=10% Similarity=-0.031 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHh
Q 046956 400 YCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLG 479 (574)
Q Consensus 400 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 479 (574)
+..+...+...|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++++++. .+.+...+..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~----- 78 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQI----- 78 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHH-----
Confidence 3344555555556666666665555532 223345555555555555555555555555432 00011111111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 046956 480 RTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQ 532 (574)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 532 (574)
..++..+...+...+++++|+..+++++..+|+
T Consensus 79 --------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 79 --------------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred --------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 123444555666677777777777777766554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.01 E-value=1.5e-05 Score=63.37 Aligned_cols=63 Identities=10% Similarity=-0.094 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----------CchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 046956 501 SAWGALLGACKLYSDIELGELVANRLFELEPQ-----------NAGSYVLLSNIYATADRWLDVCLVRSKMKER 563 (574)
Q Consensus 501 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (574)
..|+.+..+|...|++++|+..+++++++.|. ...+++.++.+|...|++++|...|++..+-
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888888888888888876332 1236788899999999999999999987653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.82 E-value=4.2e-05 Score=66.33 Aligned_cols=128 Identities=13% Similarity=-0.018 Sum_probs=91.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCc-HHHHHHHHHHHhhcCCHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPS-PEHYACMVDLLGRTGHLK 485 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 485 (574)
....|++++|+..+++.++.. +-|...+..+...++..|++++|...++.+.+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345799999999999999853 334568999999999999999999999999863 344 455666666666666555
Q ss_pred HHHHHHHhC--CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 046956 486 SAYELLNSM--PVEPHA-SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYV 538 (574)
Q Consensus 486 ~A~~~~~~~--~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 538 (574)
++..-.... ...|+. ..+......+...|+.++|...++++.+..|..+..+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 554433322 223332 22333346678899999999999999999998776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.81 E-value=9.2e-06 Score=63.58 Aligned_cols=99 Identities=9% Similarity=-0.001 Sum_probs=69.7
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSMPVEPHASAWGALLGACKLYSDIELGEL 521 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 521 (574)
|.+.+.+++|...|+.+.+ ..|.+...+..+..++...+++..+.+ ..+.+++|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHH
Confidence 3445566666666666665 334445566666666555544433332 2245688999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCC-----------chHHHHHHHHHHhCC
Q 046956 522 VANRLFELEPQNAGSYVLLSNIYATADR-----------WLDVCLVRSKMKERG 564 (574)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~~~~~~ 564 (574)
.++++++++|+++.+|..++.+|...|+ +++|.+.|++..+..
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 9999999999999999999999988764 688888888887654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=2.1e-05 Score=76.00 Aligned_cols=132 Identities=8% Similarity=-0.040 Sum_probs=68.8
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPD-EVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYE 489 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 489 (574)
+.++.++..+.+... +.|+ ...+..+...+.+.|+.++|...+...... .| ..++..++..+...|++++|..
T Consensus 100 ~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 100 GFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHTC---------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHH
Confidence 445555554444333 3343 335666666677777777777766665542 11 2456667777778888888888
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 046956 490 LLNSM-PVEPH-ASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATAD 548 (574)
Q Consensus 490 ~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (574)
.|+++ ...|+ ...|+.+...+...|+..+|+..|.+++..+|+.+.++..|+.++.+..
T Consensus 174 ~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 174 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 87776 44554 4577777777777888888888888888887777777777777665433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.68 E-value=0.00021 Score=56.41 Aligned_cols=92 Identities=10% Similarity=-0.032 Sum_probs=55.8
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCc----------HHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC----
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPS----------PEHYACMVDLLGRTGHLKSAYELLNSM--------PVEPH---- 499 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---- 499 (574)
+...|++++|+..|++.++...-.|+ ...|+.+..+|...|++++|.+.+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34445555555555555442111111 244556666666666666666665553 11222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 046956 500 -ASAWGALLGACKLYSDIELGELVANRLFELEPQN 533 (574)
Q Consensus 500 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 533 (574)
...+..+..+|...|++++|+..|++++++.|..
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 2245667788999999999999999999985543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=9.1e-05 Score=52.73 Aligned_cols=66 Identities=15% Similarity=-0.042 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 046956 500 ASAWGALLGACKLYSDIELGELVANRLFELEPQN-------AGSYVLLSNIYATADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (574)
...+..++..+.+.|++++|+..+++++++.|.+ ..++..|+.+|.+.|++++|...++++.+.++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 3445577888999999999999999999985543 45789999999999999999999999987654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.50 E-value=0.00076 Score=54.28 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHh----hcCCCCcHHHH
Q 046956 397 VVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTP-DEVAFTIVLTACSHVGLVEDGWRFFEAMQN----VYAIVPSPEHY 471 (574)
Q Consensus 397 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 471 (574)
...+..+...+...|++++|+..++++++. .| +...|..++.++...|+.++|++.|+++.+ ..|+.|+..+-
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 346777888888889999999999988884 45 456888889999999999999988888743 23788876653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=4.2e-05 Score=66.33 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=87.3
Q ss_pred HhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHH
Q 046956 442 CSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM-PVEPHAS-AWGALLGACKLYSDIELG 519 (574)
Q Consensus 442 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a 519 (574)
..+.|++++|+..+++.++ .-+.+...+..++..|+..|++++|.+.++.. ...|+.. .+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999998 56677899999999999999999999999988 5566543 444444444433333333
Q ss_pred HHHHHHHHh-hCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 046956 520 ELVANRLFE-LEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERG 564 (574)
Q Consensus 520 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (574)
......... ..|++...+...+..+...|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 222111111 134445566677888999999999999999987654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.24 E-value=0.013 Score=41.87 Aligned_cols=141 Identities=9% Similarity=0.060 Sum_probs=102.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 046956 407 LSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKS 486 (574)
Q Consensus 407 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 486 (574)
+...|..++..+++.+... ..+..-|+.++.-....-+-+-..+.++..-+.+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 4556888888888888776 3355567777766666666666777777665533332 2344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKMKERGLR 566 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 566 (574)
....+-.+. .+...+...+.....+|.-+.-.+++..+++.+..+|.....++.+|.+.|...++-+++.++-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444432 244556666788889999999999999988888778999999999999999999999999999999985
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.61 E-value=0.017 Score=43.36 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 046956 514 SDIELGELVANRLFELEPQNAGSYVLLSNIYAT----ADRWLDVCLVRSKMKERGL 565 (574)
Q Consensus 514 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 565 (574)
.|.++|.+.|+++.+. .++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 4677777777777665 456667777777765 4577788888888777664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.29 Score=45.30 Aligned_cols=115 Identities=12% Similarity=0.106 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH-H-HHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 411 GHGRQAVSLFDRMLSEG-LTPDEV-A-FTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g-~~p~~~-~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
.+.+.+..++....... +.++.. . ...+.......+..+.+...+...... ..+.....-.+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 45666666666655432 222211 1 112222333445556666666555442 22333333344445566777777
Q ss_pred HHHHHhCCCCCC-HHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 046956 488 YELLNSMPVEPH-ASAWGA-LLGACKLYSDIELGELVANRLFE 528 (574)
Q Consensus 488 ~~~~~~~~~~p~-~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~ 528 (574)
...++.+...+. ..-|.. +..++...|+.+.|...|..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 777777643331 122222 23666677777777777776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.013 Score=42.46 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=50.7
Q ss_pred CcHHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 046956 466 PSPEHYACMVDLLGRTG---HLKSAYELLNSM-PVEP-HA-SAWGALLGACKLYSDIELGELVANRLFELEPQNAGSYVL 539 (574)
Q Consensus 466 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (574)
|+..+--..+.++.+.. +.++++.+++++ ...| +. ..+..+..+|.+.|++++|.+.++++++++|++..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 44555555666666554 455777777776 2334 33 455666778888888888888888888888888776544
Q ss_pred H
Q 046956 540 L 540 (574)
Q Consensus 540 l 540 (574)
.
T Consensus 113 ~ 113 (124)
T d2pqrb1 113 K 113 (124)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.1 Score=37.65 Aligned_cols=47 Identities=9% Similarity=0.002 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhCCCCc-hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 046956 516 IELGELVANRLFELEPQNA-GSYVLLSNIYATADRWLDVCLVRSKMKE 562 (574)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (574)
.++|+.+++++++.+|.+. ..++.|+.+|.+.|++++|++.++++.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3445555555555444432 3445555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.50 E-value=0.13 Score=38.15 Aligned_cols=112 Identities=6% Similarity=-0.054 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhh----cCCHHH
Q 046956 411 GHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGR----TGHLKS 486 (574)
Q Consensus 411 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 486 (574)
.|+++|+.+|++..+.| .+.. ...|. .....+.++|..++++..+. + ++.....|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g-~~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN-EMFG--CLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--HHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCC-Chhh--hhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence 36778888888888776 2222 22222 34456788888888887764 3 34555556666543 457888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 046956 487 AYELLNSMPVEPHASAWGALLGACKL----YSDIELGELVANRLFELEP 531 (574)
Q Consensus 487 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 531 (574)
|.++|++.-..-++.....+...|.. ..|.++|.+.++++.+...
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 88888887323355555566666554 4588899999998887643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=1.2 Score=41.04 Aligned_cols=349 Identities=11% Similarity=0.012 Sum_probs=189.1
Q ss_pred HHHHHHcCCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHccCChHHHH
Q 046956 177 LIDLYGKRKEISCARKVFDEMPERNVVSWTAMIVGYASVGDLVEAKTVFDLMPE---RSNVSWNALIGGLVKIGDLRSAR 253 (574)
Q Consensus 177 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 253 (574)
.+..+.+.+++......+..-+ .+...-..+..+....|+..+|...+..+-. ..+..+..+...+...|
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~------ 150 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG------ 150 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT------
T ss_pred HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC------
Confidence 3455667777777666554322 2334444566777778888777776665422 23344444444443333
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCHhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH
Q 046956 254 QLFDEMPERNVVSYTTMIDGYAKVGDMTSARSLFEAAPDRDVVAWSALISGYAQNGQPDEAVKIFSDMCSKNVQPDEFIL 333 (574)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 333 (574)
..+...+-.-+......|++..|..+...+...........+..... ...+....... .++....
T Consensus 151 -------~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~~-----~~~~~~~ 215 (450)
T d1qsaa1 151 -------KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-----GATDFTR 215 (450)
T ss_dssp -------CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-----CCCHHHH
T ss_pred -------CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhcC-----CCChhhh
Confidence 23444444455666667888888888777665444444444444332 22222222111 1222222
Q ss_pred HHHHHHHhc--cCCcchHHHHHHHHHHhCCCCChh--hHHHHHHHHhHhcCCHHHHHHHHhhCC--CCChhHHHHHHHHH
Q 046956 334 VSLMSACSQ--VGNLDLSNWVDSYLSRSHMDLSRA--HVIAALVDMNAKCGNMDRAAELFETMP--NRDVVSYCSMIKGL 407 (574)
Q Consensus 334 ~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~ 407 (574)
..+..++.+ ..+.+.+...+............. .....+.......+..+.+...+.... ..+.....-.+...
T Consensus 216 ~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a 295 (450)
T d1qsaa1 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA 295 (450)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHH
Confidence 222233222 235556666666655443222221 011122223334455666666665443 23333333344455
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 046956 408 SIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSA 487 (574)
Q Consensus 408 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 487 (574)
...++...+...+..|... ..-...-..-+..++...|+.+.|...|..+.. .++ -|..|... +.|..-..
T Consensus 296 l~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~~~ 366 (450)
T d1qsaa1 296 LGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEYEL 366 (450)
T ss_dssp HHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCCCC
T ss_pred HHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCCCC
Confidence 6678889888888876432 122234445677888899999999999998864 233 34443322 12211000
Q ss_pred HHHHHhCCCCCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046956 488 YELLNSMPVEPH-ASA---WGALLGACKLYSDIELGELVANRLFELEPQNAGSYVLLSNIYATADRWLDVCLVRSKM 560 (574)
Q Consensus 488 ~~~~~~~~~~p~-~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 560 (574)
. ....+..+. ... -...+..+...|+...|...+..+.+.. ++.-...++.+..+.|.++.|.....+.
T Consensus 367 -~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 367 -K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp -C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred -C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0 000111111 111 1123456778999999999998887643 4667778899999999999999877655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.35 E-value=0.89 Score=32.36 Aligned_cols=136 Identities=15% Similarity=0.032 Sum_probs=86.0
Q ss_pred hHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046956 376 NAKCGNMDRAAELFETMPN-RDVVSYCSMIKGLSIHGHGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRF 454 (574)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 454 (574)
+.-.|..++..+++.+..+ .+..-||=+|.-....-+-+-..+.++..-.. +.. ...++.......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl------------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------DKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG------------GGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh-cCc------------hhhhcHHHHHHH
Confidence 3446788888888877663 45555666666555556666556555554331 111 222333333333
Q ss_pred HHHhHhhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 046956 455 FEAMQNVYAIVPSPEHYACMVDLLGRTGHLKSAYELLNSM--PVEPHASAWGALLGACKLYSDIELGELVANRLFELE 530 (574)
Q Consensus 455 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 530 (574)
+-.+- .+......-++.+..+|+-+.-.++.+.+ ..++++.....+..+|.+.|+..++-+++.++-+..
T Consensus 79 ~~~~n------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 79 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 32221 23344555567778888888888887774 356788888888899999999999999888887653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.75 E-value=0.75 Score=30.97 Aligned_cols=62 Identities=16% Similarity=0.310 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHhhcCCCCcHHHHHHHH
Q 046956 412 HGRQAVSLFDRMLSEGLTPDEVAFTIVLTACSHVGLVEDGWRFFEAMQNVYAIVPSPEHYACMV 475 (574)
Q Consensus 412 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 475 (574)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+..+.+ ..++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 34456666777777788999999999999999999999999999998874 333455676665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.89 E-value=2.2 Score=28.61 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=45.1
Q ss_pred CchHHHHHHHHhHhCCCCCCcchHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046956 116 RFIEVFTIFVRLIREEAVPDKYTFPLVIKACSHVLSVREGTAIHAAVIRWGVDEDVFVGTSLID 179 (574)
Q Consensus 116 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 179 (574)
+.-+..+-+..+......|+.....+.+++|.+.+++..|.++++-.+... .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 444566667777777778888888888888888888888888888776553 334556665543
|