Citrus Sinensis ID: 046960

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MGASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWLSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEcccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHcccccccccccccccEEHHHHHcccccccccHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccccccccccccccccEccccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccEEEHHcc
Coil and Loop (DISEMBL)
mgasflstvpfmlpivpppsrsafstVATRCSAhagairchkietqitveagfgrRDILKCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTAlkgnpdliPSLLTLALNDamtydkvrtkplrfKCLVDVIKFLYLLWRKEGNKLMSCWLSL
Flexible Loop (DISEMBL)
mgasflstvpfMLPIVPPPSRSAFSTVATRCSAHagairchkietqitveagfgrRDILKCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQtalkgnpdLIPSLLTLALNDAMTYDKvrtkplrfkcLVDVIKFLYLLWRKEGNKLMSCWLSL
Low Complexity Region (SEG)
MGASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWLSL
Disordered region (IsUnstruct)
*******TVPFMLPIVP****SAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVEMARAADLIQ****SEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWL**
Disordered Region (DISOPRED)
***SFLSTVPF***********************AGAIRCH**********GFGRRDILKCIGATIGMEIISSSGSVEMARAAD**************KETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKL*SCWLSL
Disordered Region (DISEMBL)
MGASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWLSL
Disordered Region (DISPRO)
****FLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWLSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWLSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q9THX6	345	Thylakoid lumenal 29 kDa	N/A	no	0.745	0.356	0.539	9e-29
P82281	349	Thylakoid lumenal 29 kDa	yes	no	0.939	0.444	0.455	1e-25
P81833	30	Thylakoid lumenal 29 kDa	N/A	no	0.181	1.0	0.733	7e-05

>sp|Q9THX6|TL29_SOLLC Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1

 Score =  125 bits (315), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 89/128 (69%), Gaps = 5/128 (3%)

Query: 4   SFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILKCIG 63
           SF ST+P ++  +P PS     T A+R     G I C K  +++  E  F RRDIL+ +G
Sbjct: 3   SFASTLPSLVSFIPSPSSI---TNASRNPPQPGMI-CCKFRSELNNEDRFHRRDILQSVG 58

Query: 64  ATIGMEIIS-SSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALN 122
           A +GM++I+ SS  +E+A AADLIQRRQRS+F S IK TL  A+K NPD+IPSLLTLALN
Sbjct: 59  AAVGMDLIARSSAFIEVANAADLIQRRQRSDFQSKIKLTLYDAIKANPDIIPSLLTLALN 118

Query: 123 DAMTYDKV 130
           DA+TYDK 
Sbjct: 119 DAITYDKA 126

Solanum lycopersicum (taxid: 4081)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|P82281|TL29_ARATH Thylakoid lumenal 29 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=TL29 PE=1 SV=2

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 96/167 (57%), Gaps = 12/167 (7%)

Query: 2   GASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEA-GFGRRDILK 60
           G SFLSTVP           +  S+ + R +     IRC KIE Q++ E+  F RRD+LK
Sbjct: 3   GVSFLSTVPSFTNTTNHQHLTTLSSSSHRSAV----IRCSKIEPQVSGESLAFHRRDVLK 58

Query: 61  CIGATIGMEIISSS--GSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLT 118
             G  +GME+I +    +V  A+AADL QRRQRSEF S IK  L T +K  P+L+PSLL 
Sbjct: 59  LAGTAVGMELIGNGFINNVGDAKAADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLK 118

Query: 119 LALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWLSL 165
           LALNDAMTYDK      +       I+F   L R E N+ +S  LSL
Sbjct: 119 LALNDAMTYDKA----TKSGGANGSIRFSSELSRAE-NEGLSDGLSL 160

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P81833|TL29_SPIOL Thylakoid lumenal 29 kDa protein, chloroplastic (Fragment) OS=Spinacia oleracea PE=1 SV=1

 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/30 (73%), Positives = 24/30 (80%)

Query: 83  ADLIQRRQRSEFISNIKETLQTALKGNPDL 112
           ADLIQRRQRSEF S+IK  L T +K NPDL
Sbjct: 1   ADLIQRRQRSEFQSDIKGILYTVIKKNPDL 30

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
302141995	344	unnamed protein product [Vitis vinifera]	0.751	0.360	0.648	8e-39
255545804	388	L-ascorbate peroxidase, putative [Ricinu	0.775	0.329	0.638	4e-34
363807174	370	uncharacterized protein LOC100795192 [Gl	0.739	0.329	0.602	2e-32
356500717	347	PREDICTED: thylakoid lumenal 29 kDa prot	0.739	0.351	0.602	3e-32
380863110	341	APX [Dimocarpus longan]	0.733	0.354	0.595	7e-32
224082097	332	predicted protein [Populus trichocarpa]	0.569	0.283	0.652	3e-28
11387206	345	RecName: Full=Thylakoid lumenal 29 kDa p	0.745	0.356	0.539	4e-27
15236678	349	ascorbate peroxidase 4 [Arabidopsis thal	0.939	0.444	0.455	6e-24
31980500	296	putative ascorbate peroxidase APX4 [Arab	0.818	0.456	0.468	1e-21
357489751	353	hypothetical protein MTR_5g064610 [Medic	0.775	0.362	0.551	2e-21

>gi|302141995|emb|CBI19198.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 100/131 (76%), Gaps = 7/131 (5%)

Query: 1   MGASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILK 60
           MG SFLST P ++P+ P PS +       R S  AG IRC++IE   T E GF RRD+LK
Sbjct: 1   MGVSFLSTAPSLIPMAPQPSSTP------RHSLQAGRIRCNRIECNGTDEDGFRRRDVLK 54

Query: 61  CIGATIGMEIISSSGS-VEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTL 119
           C+GAT+GME+++SSG  VEMA AADLIQ RQRSEF SN+K TL TA+KGNPD+IPSLLTL
Sbjct: 55  CVGATLGMELLASSGPFVEMAAAADLIQLRQRSEFRSNVKGTLFTAIKGNPDIIPSLLTL 114

Query: 120 ALNDAMTYDKV 130
           ALNDAMTYDK 
Sbjct: 115 ALNDAMTYDKA 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545804|ref|XP_002513962.1| L-ascorbate peroxidase, putative [Ricinus communis] gi|223547048|gb|EEF48545.1| L-ascorbate peroxidase, putative [Ricinus communis]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/130 (63%), Positives = 95/130 (73%), Gaps = 2/130 (1%)

Query: 1   MGASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILK 60
           MG +FLST+P ++ +    S    STV  R    AG I   K ET +T E  F RRD+LK
Sbjct: 145 MGVTFLSTIPSLVHL-SSLSNPTTSTVTHRLPPRAGPICGIKNETDVTSENDFLRRDVLK 203

Query: 61  CIGATIGMEIISSSGS-VEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTL 119
           C GATIGME+I+SSGS VEMA AADLIQRRQRSEF SNIK TL TALK  P+L+PS+LTL
Sbjct: 204 CFGATIGMELITSSGSFVEMAYAADLIQRRQRSEFQSNIKGTLYTALKEKPELVPSILTL 263

Query: 120 ALNDAMTYDK 129
           ALNDAMTYDK
Sbjct: 264 ALNDAMTYDK 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807174|ref|NP_001242092.1| uncharacterized protein LOC100795192 [Glycine max] gi|255638071|gb|ACU19350.1| unknown [Glycine max]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 97/136 (71%), Gaps = 14/136 (10%)

Query: 1   MGASFLSTVPFMLPIVP---PPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFG--R 55
           MG SFLST P +LP+V    PPS        TR    + +I C+K  + ++ E  F   R
Sbjct: 1   MGVSFLSTCPSLLPLVAYDTPPS--------TRYQPRSVSICCNKTISNVSDEEPFHWRR 52

Query: 56  RDILKCIGATIGMEIISSSGS-VEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIP 114
           R+ILKC GAT+G+E+I SSGS V MA AADLIQRRQRSEF S +KETL TA+KGNPDLIP
Sbjct: 53  REILKCAGATVGLELIGSSGSLVGMANAADLIQRRQRSEFQSKVKETLFTAIKGNPDLIP 112

Query: 115 SLLTLALNDAMTYDKV 130
           SLLTLALNDA+TYDK 
Sbjct: 113 SLLTLALNDALTYDKA 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500717|ref|XP_003519178.1| PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic-like [Glycine max]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 96/136 (70%), Gaps = 14/136 (10%)

Query: 1   MGASFLSTVPFMLPIVP---PPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFG--R 55
           MG SFLST P +LP+V    PPS         R    + +I C+K  + ++    F   R
Sbjct: 1   MGVSFLSTCPSLLPLVAYDTPPS--------ARYQPRSVSICCNKTISDVSDGEPFHWRR 52

Query: 56  RDILKCIGATIGMEIISSSGS-VEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIP 114
           RD+LKC GAT+G+E+I SSGS VEMA AADLIQRRQRSEF S IKETL TA+KGNPDLIP
Sbjct: 53  RDVLKCAGATVGLELIGSSGSLVEMANAADLIQRRQRSEFQSKIKETLFTAIKGNPDLIP 112

Query: 115 SLLTLALNDAMTYDKV 130
           SLLTLALNDA+TYDK 
Sbjct: 113 SLLTLALNDALTYDKA 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380863110|gb|AFF18848.1| APX [Dimocarpus longan]

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 94/131 (71%), Gaps = 10/131 (7%)

Query: 1   MGASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILK 60
           M  SFLSTV       P P+ +   T  T  +   G IRC K++T +++     RR+IL 
Sbjct: 1   MNVSFLSTVS-----SPLPTLTTCKTTTTTTTTSVGVIRCRKVDTDVSLH----RREILN 51

Query: 61  CIGATIGMEIISSSGS-VEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTL 119
           C+GATIGME+I SSGS VEMA AADLIQRRQRSEF+SN+K TLQ A+KG P+LIPSLLTL
Sbjct: 52  CVGATIGMEMIGSSGSFVEMASAADLIQRRQRSEFLSNVKGTLQIAIKGKPELIPSLLTL 111

Query: 120 ALNDAMTYDKV 130
           ALND+MTYDK 
Sbjct: 112 ALNDSMTYDKA 122

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082097|ref|XP_002306565.1| predicted protein [Populus trichocarpa] gi|222856014|gb|EEE93561.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 79/95 (83%), Gaps = 1/95 (1%)

Query: 37  AIRCHKIETQITVEAGFGRRDILKCIGATIGMEIISSSGS-VEMARAADLIQRRQRSEFI 95
           AIRCHK++T +  E    RR++LKC GAT+GME+++SSGS VEMA AADLIQRRQRSEF 
Sbjct: 19  AIRCHKMDTDVPGENVLRRREVLKCFGATVGMELLASSGSFVEMASAADLIQRRQRSEFQ 78

Query: 96  SNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKV 130
           S+I++TL  A+KG P+L+P +LTLALNDA+TYDK 
Sbjct: 79  SSIRQTLFAAIKGKPELVPYILTLALNDAITYDKA 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11387206|sp|Q9THX6.1|TL29_SOLLC RecName: Full=Thylakoid lumenal 29 kDa protein, chloroplastic; Short=TL29; AltName: Full=LeAPx09; AltName: Full=P29; Flags: Precursor gi|6634469|emb|CAB64343.1| putative ascorbate peroxidase (TL29) [Solanum lycopersicum]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 89/128 (69%), Gaps = 5/128 (3%)

Query: 4   SFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEAGFGRRDILKCIG 63
           SF ST+P ++  +P PS     T A+R     G I C K  +++  E  F RRDIL+ +G
Sbjct: 3   SFASTLPSLVSFIPSPSSI---TNASRNPPQPGMI-CCKFRSELNNEDRFHRRDILQSVG 58

Query: 64  ATIGMEIIS-SSGSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALN 122
           A +GM++I+ SS  +E+A AADLIQRRQRS+F S IK TL  A+K NPD+IPSLLTLALN
Sbjct: 59  AAVGMDLIARSSAFIEVANAADLIQRRQRSDFQSKIKLTLYDAIKANPDIIPSLLTLALN 118

Query: 123 DAMTYDKV 130
           DA+TYDK 
Sbjct: 119 DAITYDKA 126

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236678|ref|NP_192640.1| ascorbate peroxidase 4 [Arabidopsis thaliana] gi|12644689|sp|P82281.2|TL29_ARATH RecName: Full=Thylakoid lumenal 29 kDa protein, chloroplastic; Short=TL29; AltName: Full=AtAPx07; AltName: Full=P29; AltName: Full=Probable L-ascorbate peroxidase 4; Flags: Precursor gi|13899079|gb|AAK48961.1|AF370534_1 Putative L-ascorbate peroxidase [Arabidopsis thaliana] gi|7267543|emb|CAB78025.1| putative protein [Arabidopsis thaliana] gi|18377504|gb|AAL66918.1| putative L-ascorbate peroxidase [Arabidopsis thaliana] gi|332657311|gb|AEE82711.1| ascorbate peroxidase 4 [Arabidopsis thaliana]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 96/167 (57%), Gaps = 12/167 (7%)

Query: 2   GASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGAIRCHKIETQITVEA-GFGRRDILK 60
           G SFLSTVP           +  S+ + R +     IRC KIE Q++ E+  F RRD+LK
Sbjct: 3   GVSFLSTVPSFTNTTNHQHLTTLSSSSHRSAV----IRCSKIEPQVSGESLAFHRRDVLK 58

Query: 61  CIGATIGMEIISSS--GSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLT 118
             G  +GME+I +    +V  A+AADL QRRQRSEF S IK  L T +K  P+L+PSLL 
Sbjct: 59  LAGTAVGMELIGNGFINNVGDAKAADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLK 118

Query: 119 LALNDAMTYDKVRTKPLRFKCLVDVIKFLYLLWRKEGNKLMSCWLSL 165
           LALNDAMTYDK      +       I+F   L R E N+ +S  LSL
Sbjct: 119 LALNDAMTYDKA----TKSGGANGSIRFSSELSRAE-NEGLSDGLSL 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|31980500|gb|AAP72143.1|AF441713_1 putative ascorbate peroxidase APX4 [Arabidopsis thaliana]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/143 (46%), Positives = 86/143 (60%), Gaps = 8/143 (5%)

Query: 26  TVATRCSAHAGAIRCHKIETQITVEA-GFGRRDILKCIGATIGMEIISSS--GSVEMARA 82
           T  +  S  +  IRC KIE Q++ E+  F RRD+LK  G  +GME+I +    +V  A+A
Sbjct: 13  TTLSSSSHRSAVIRCSKIEPQVSGESLAFHRRDVLKLAGTAVGMELIGNGFINNVGDAKA 72

Query: 83  ADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKPLRFKCLVD 142
           ADL QRRQRSEF + IK  L T +K  P+L+PSLL LALNDAMTYDK      +      
Sbjct: 73  ADLNQRRQRSEFQAKIKILLSTTIKAKPELVPSLLKLALNDAMTYDKA----TKSGGANG 128

Query: 143 VIKFLYLLWRKEGNKLMSCWLSL 165
            I+F   L R E N+ +S  LSL
Sbjct: 129 SIRFSSELSRAE-NEGLSDGLSL 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489751|ref|XP_003615163.1| hypothetical protein MTR_5g064610 [Medicago truncatula] gi|355516498|gb|AES98121.1| hypothetical protein MTR_5g064610 [Medicago truncatula]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 92/136 (67%), Gaps = 8/136 (5%)

Query: 1   MGASFLSTVPFMLPIVPPPSRSAF-STVATRCSAHAGAIRCHKIETQITVEA----GFGR 55
           MG SFLS     LP + P   S +  T +TR    + +I C KI+T ++ E      + R
Sbjct: 1   MGVSFLSIS--TLPSLHPLGGSHYPKTTSTRHQPRSVSICCAKIKTDVSDEEEQFFHWRR 58

Query: 56  RDILKCIGATIGMEIISSSGSVE-MARAADLIQRRQRSEFISNIKETLQTALKGNPDLIP 114
           RD+LKCIG TIG+E ISSSGS+   A AADLI+RRQRS+F S IK TL TA+K NPDL P
Sbjct: 59  RDVLKCIGLTIGLESISSSGSLLGTANAADLIERRQRSDFQSQIKGTLYTAIKANPDLTP 118

Query: 115 SLLTLALNDAMTYDKV 130
           S+LTLALNDA+TYDK 
Sbjct: 119 SILTLALNDALTYDKA 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2122333	349	TL29 "AT4G09010" [Arabidopsis	0.763	0.361	0.514	5.9e-25

TAIR|locus:2122333 TL29 "AT4G09010" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 70/136 (51%), Positives = 88/136 (64%)

Query:     2 GASFLSTVPFMLPIVPPPSRSAFSTVATRCSAHAGA-IRCHKIETQITVEA-GFGRRDIL 59
             G SFLSTVP         +    +T+++  S+H  A IRC KIE Q++ E+  F RRD+L
Sbjct:     3 GVSFLSTVP---SFTNTTNHQHLTTLSS--SSHRSAVIRCSKIEPQVSGESLAFHRRDVL 57

Query:    60 KCIGATIGMEIISSS--GSVEMARAADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLL 117
             K  G  +GME+I +    +V  A+AADL QRRQRSEF S IK  L T +K  P+L+PSLL
Sbjct:    58 KLAGTAVGMELIGNGFINNVGDAKAADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLL 117

Query:   118 TLALNDAMTYDKVRTK 133
              LALNDAMTYDK  TK
Sbjct:   118 KLALNDAMTYDKA-TK 132


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       165   0.00093  107 3  11 22  0.45    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.98u 0.11s 17.09t   Elapsed:  00:00:01
  Total cpu time:  16.98u 0.11s 17.09t   Elapsed:  00:00:01
  Start:  Fri May 10 09:17:49 2013   End:  Fri May 10 09:17:50 2013

GO:0004601 "peroxidase activity" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016688 "L-ascorbate peroxidase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015185001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (344 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.445
	GSVIVG00021525001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (273 aa)				•			•		0.438
	GSVIVG00006697001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (199 aa)				•					0.424
	GSVIVG00024265001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (516 aa)				•					0.422
	GSVIVG00002992001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)				•					0.418
	GSVIVG00035114001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (226 aa)				•					0.416
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)				•					0.409
	GSVIVG00017591001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (399 aa)				•					0.407
	GSVIVG00003851001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (518 aa)				•					0.403
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PLN02879	251	L-ascorbate peroxidase	97.17
cd00314	255	plant_peroxidase_like Heme-dependent peroxidases s	96.32
PLN02364	250	L-ascorbate peroxidase 1	96.21
PLN02608	289	L-ascorbate peroxidase	94.92
cd00649	409	catalase_peroxidase_1 N-terminal catalytic domain	94.88
cd00691	253	ascorbate_peroxidase Ascorbate peroxidases and cyt	94.07
TIGR00198	716	cat_per_HPI catalase/peroxidase HPI. Note that the	92.8
PF00141	230	peroxidase: Peroxidase; InterPro: IPR002016 Peroxi	92.03
cd08200	297	catalase_peroxidase_2 C-terminal non-catalytic dom	91.23
PRK15061	726	catalase/hydroperoxidase HPI(I); Provisional	89.98
TIGR00198	716	cat_per_HPI catalase/peroxidase HPI. Note that the	89.35
PRK15061	726	catalase/hydroperoxidase HPI(I); Provisional	88.61
cd08201	264	plant_peroxidase_like_1 Uncharacterized family of	87.72
cd00692	328	ligninase Ligninase and other manganese-dependent	84.48

>PLN02879 L-ascorbate peroxidase

Probab=97.17  E-value=0.00051  Score=58.16  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC-----cee
Q 046960           96 SNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP-----LRF  137 (165)
Q Consensus        96 s~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg-----~~~  137 (165)
                      ..++..|.+.|+ .....|.++|||..||+|||+.+++|     |||
T Consensus        18 ~~~~~~~~~~~~-~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf   63 (251)
T PLN02879         18 QRCKRKLRGLIA-EKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRH   63 (251)
T ss_pred             HHHHHHHHHHHh-CCCchhHhHHHHHhhhccccCCCCCCCCCeeecC
Confidence            345667777776 46999999999999999999999999     888

>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases

Probab=96.32  E-value=0.0088  Score=48.60  Aligned_cols=42  Identities=38%  Similarity=0.486  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhhcCCCchhHHHHHHhcccccccccc-CCC-----ceee
Q 046960           97 NIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVR-TKP-----LRFK  138 (165)
Q Consensus        97 ~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaT-Ktg-----~~~~  138 (165)
                      .|+..|...++.+|.++|++|||+..|+.|||..+ +.|     |+|.
T Consensus         2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~   49 (255)
T cd00314           2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE   49 (255)
T ss_pred             hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc
Confidence            47788888888899999999999999999999998 333     8885

Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised

>PLN02364 L-ascorbate peroxidase 1

Probab=96.21  E-value=0.0063  Score=51.35  Aligned_cols=43  Identities=21%  Similarity=0.371  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC-----cee
Q 046960           94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP-----LRF  137 (165)
Q Consensus        94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg-----~~~  137 (165)
                      =..+|++.|.+.| .+|...|.+|||+..||+|||...++|     |+|
T Consensus        15 ~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~   62 (250)
T PLN02364         15 AVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF   62 (250)
T ss_pred             HHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc
Confidence            3567888999988 579999999999999999999999875     666

>PLN02608 L-ascorbate peroxidase

Probab=94.92  E-value=0.036  Score=48.18  Aligned_cols=41  Identities=32%  Similarity=0.400  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960           92 SEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP  134 (165)
Q Consensus        92 seFqs~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg  134 (165)
                      .||+. ++..|. ++..+|.+.|.+|||+..|++|||+.++.|
T Consensus        12 ~~~~~-~~~~~~-~~~~d~~~a~~llRLaFHDc~t~d~~~~~g   52 (289)
T PLN02608         12 KEIEK-ARRDLR-ALIASKNCAPIMLRLAWHDAGTYDAKTKTG   52 (289)
T ss_pred             HHHHH-HHHHHH-HHHHCCCcHHHHHHHhhhhcCCcCCCCCCC
Confidence            34443 444443 355689999999999999999999999887

>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases

Probab=94.88  E-value=0.033  Score=50.87  Aligned_cols=61  Identities=25%  Similarity=0.364  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhhcCC--------CchhHHHHHHhccccccccccCCC------ceee---------hhHHHHHHHHHHHH
Q 046960           96 SNIKETLQTALKGNP--------DLIPSLLTLALNDAMTYDKVRTKP------LRFK---------CLVDVIKFLYLLWR  152 (165)
Q Consensus        96 s~ik~~L~~ai~~~p--------eliPslltLaLNDA~TYDKaTKtg------~~~~---------~~~~~~~~~~~~~~  152 (165)
                      ..+|..|++.|+..-        -..|.+||||--||.|||+.+++|      |||.         -|--++++|--+-.
T Consensus        45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pik~  124 (409)
T cd00649          45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPIKQ  124 (409)
T ss_pred             HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHHHHH
Confidence            456778888888653        489999999999999999999999      9996         24445666655555


Q ss_pred             HhCC
Q 046960          153 KEGN  156 (165)
Q Consensus       153 ~~~~  156 (165)
                      |-++
T Consensus       125 k~~~  128 (409)
T cd00649         125 KYGN  128 (409)
T ss_pred             HcCC
Confidence            5553

This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C

>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases

Probab=94.07  E-value=0.061  Score=45.32  Aligned_cols=38  Identities=24%  Similarity=0.428  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCC
Q 046960           95 ISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTK  133 (165)
Q Consensus        95 qs~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKt  133 (165)
                      ++.|++.++.+++ +|.+.|++|||+..|.++||.....
T Consensus        13 ~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~~d~s~~~   50 (253)
T cd00691          13 LEAARNDIAKLID-DKNCAPILVRLAWHDSGTYDKETKT   50 (253)
T ss_pred             HHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhccccccCC
Confidence            3578899999999 9999999999999999999877665

Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.

>TIGR00198 cat_per_HPI catalase/peroxidase HPI

Probab=92.80  E-value=0.25  Score=48.09  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC------cee-----------ehhHHHHHHHHHHHHHh
Q 046960           96 SNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRF-----------KCLVDVIKFLYLLWRKE  154 (165)
Q Consensus        96 s~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~-----------~~~~~~~~~~~~~~~~~  154 (165)
                      +.|++ |++.|-..---+|-||++|--+|.|||+.+|+|      |||           .-|-.|+++|.-+-.|-
T Consensus       432 ~di~~-lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f  506 (716)
T TIGR00198       432 GDIKE-LKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEF  506 (716)
T ss_pred             HHHHH-HHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHc
Confidence            45665 555555555678999999999999999999999      999           46777888887665554

Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.

>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions

Probab=92.03  E-value=0.097  Score=43.01  Aligned_cols=30  Identities=37%  Similarity=0.771  Sum_probs=27.3

Q ss_pred             HHHHHHHHhhcCCCchhHHHHHHhcccccc
Q 046960           98 IKETLQTALKGNPDLIPSLLTLALNDAMTY  127 (165)
Q Consensus        98 ik~~L~~ai~~~peliPslltLaLNDA~TY  127 (165)
                      +++.++++++.+|.+.|.+|||+..|+++|
T Consensus         1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~   30 (230)
T PF00141_consen    1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY   30 (230)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH
T ss_pred             CHHHHHHHHHHCcCccHHHHHHHccccccc
Confidence            367788899999999999999999999996

Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....

>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases

Probab=91.23  E-value=0.21  Score=44.12  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             HHHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee---------h--hHHHHHHHHHHHHHh
Q 046960          100 ETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK---------C--LVDVIKFLYLLWRKE  154 (165)
Q Consensus       100 ~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~---------~--~~~~~~~~~~~~~~~  154 (165)
                      +.|+..|...---+|-++|||--+|.|||+.+|+|      |||.         .  |-.|+++|.-+-.|-
T Consensus        17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~   88 (297)
T cd08200          17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEF   88 (297)
T ss_pred             HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHh
Confidence            45666666555668999999999999999999999      9994         3  667888877665554

This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do

>PRK15061 catalase/hydroperoxidase HPI(I); Provisional

Probab=89.98  E-value=0.37  Score=47.13  Aligned_cols=68  Identities=25%  Similarity=0.360  Sum_probs=49.4

Q ss_pred             HHHHHH----HHHHHHHHHhhcCC--------CchhHHHHHHhccccccccccCCC------ceeeh---------hHHH
Q 046960           91 RSEFIS----NIKETLQTALKGNP--------DLIPSLLTLALNDAMTYDKVRTKP------LRFKC---------LVDV  143 (165)
Q Consensus        91 rseFqs----~ik~~L~~ai~~~p--------eliPslltLaLNDA~TYDKaTKtg------~~~~~---------~~~~  143 (165)
                      +.||++    .+|.-|.+.++..-        -..|.++|||--+|.|||+.+++|      |||.-         |-.+
T Consensus        48 ~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka  127 (726)
T PRK15061         48 AEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKA  127 (726)
T ss_pred             HHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHH
Confidence            445544    47778888887543        488999999999999999999999      99973         3345


Q ss_pred             HHHHHHHHHHhCCce
Q 046960          144 IKFLYLLWRKEGNKL  158 (165)
Q Consensus       144 ~~~~~~~~~~~~~~~  158 (165)
                      +++|.-+-.|-|+++
T Consensus       128 ~~~L~pik~ky~~~i  142 (726)
T PRK15061        128 RRLLWPIKQKYGNKI  142 (726)
T ss_pred             HHHHHHHHHHhCCCc
Confidence            555555555666543

>TIGR00198 cat_per_HPI catalase/peroxidase HPI

Probab=89.35  E-value=0.48  Score=46.19  Aligned_cols=70  Identities=24%  Similarity=0.331  Sum_probs=50.7

Q ss_pred             HHHHHH----HHHHHHHHHhhcCC--------CchhHHHHHHhccccccccccCCC------ceeehh---------HHH
Q 046960           91 RSEFIS----NIKETLQTALKGNP--------DLIPSLLTLALNDAMTYDKVRTKP------LRFKCL---------VDV  143 (165)
Q Consensus        91 rseFqs----~ik~~L~~ai~~~p--------eliPslltLaLNDA~TYDKaTKtg------~~~~~~---------~~~  143 (165)
                      +.||++    .+|.-|++.++..-        ...|.++|+|--+|.|||+.+++|      |||.=+         -.+
T Consensus        46 ~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka  125 (716)
T TIGR00198        46 AEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKA  125 (716)
T ss_pred             HHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHH
Confidence            556665    46788888888643        389999999999999999999999      999633         334


Q ss_pred             HHHHHHHHHHhCCceeee
Q 046960          144 IKFLYLLWRKEGNKLMSC  161 (165)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~  161 (165)
                      +++|.-+-.|-|++ +||
T Consensus       126 ~~lL~pIk~kyp~~-VS~  142 (716)
T TIGR00198       126 RRLLWPIKKKYGNK-LSW  142 (716)
T ss_pred             HHHHHHHHHHCCCc-eeH
Confidence            55554444555554 455

Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.

>PRK15061 catalase/hydroperoxidase HPI(I); Provisional

Probab=88.61  E-value=1.1  Score=43.86  Aligned_cols=55  Identities=16%  Similarity=0.186  Sum_probs=44.1

Q ss_pred             HHHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee-----------hhHHHHHHHHHHHHHh
Q 046960          100 ETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK-----------CLVDVIKFLYLLWRKE  154 (165)
Q Consensus       100 ~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~-----------~~~~~~~~~~~~~~~~  154 (165)
                      ..|+..|.+.-=-+|-||++|--+|.|||+.+|+|      |||.           -|-.|+++|.-+-.+-
T Consensus       442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f  513 (726)
T PRK15061        442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEF  513 (726)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHH
Confidence            45666666554559999999999999999999999      9985           5777888888776653

>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins

Probab=87.72  E-value=0.38  Score=41.80  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             HHHhhcCCCchhHHHHHHhccccccccccCCC-----ceee
Q 046960          103 QTALKGNPDLIPSLLTLALNDAMTYDKVRTKP-----LRFK  138 (165)
Q Consensus       103 ~~ai~~~peliPslltLaLNDA~TYDKaTKtg-----~~~~  138 (165)
                      ..+...++...+.+|||+.-|+.|||+++|.|     |+|.
T Consensus        32 ~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle   72 (264)
T cd08201          32 DCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYE   72 (264)
T ss_pred             ccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeec
Confidence            44555678899999999999999999999998     7764

This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.

>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases

Probab=84.48  E-value=2.1  Score=37.99  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=17.7

Q ss_pred             CCchhHHHHHHhcccccccc
Q 046960          110 PDLIPSLLTLALNDAMTYDK  129 (165)
Q Consensus       110 peliPslltLaLNDA~TYDK  129 (165)
                      -+++|.+|||+..|++|||+
T Consensus        35 ~~~a~~~lRL~FHD~~~~~~   54 (328)
T cd00692          35 GEEAHESLRLTFHDAIGFSP   54 (328)
T ss_pred             chHHHHhHHHhhhccccccc
Confidence            45778899999999999996

Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
3rrw_A	268	Crystal Structure Of The Tl29 Protein From Arabidop		5e-12

>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis Thaliana Length = 268

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 36/48 (75%)
Query: 83  ADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKV 130
           ADL QRRQRSEF S IK  L T +K  P+L+PSLL LALNDA TYDK 
Sbjct: 2   ADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLKLALNDAXTYDKA 49

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
3rrw_A	268	Thylakoid lumenal 29 kDa protein, chloroplastic; c	1e-08

>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Length = 268

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 34/47 (72%), Positives = 37/47 (78%)

Query: 83  ADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDK 129
           ADL QRRQRSEF S IK  L T +K  P+L+PSLL LALNDAMTYDK
Sbjct: 2   ADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLKLALNDAMTYDK 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
3rrw_A	268	Thylakoid lumenal 29 kDa protein, chloroplastic; c	99.18
3e2o_A	294	CCP, cytochrome C peroxidase; cytochrome C peroxid	96.22
3riv_A	271	Ascorbate peroxidase; alpha helical bundle, heme p	95.9
3n3r_A	748	Catalase-peroxidase; E198A variant, tuberclosis, i	94.61
3vli_A	737	Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1	94.46
3vli_A	737	Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1	93.89
3ut2_A	764	Catalase-peroxidase 2; KATG, fungal, heme enzyme,	93.88
1iyn_A	295	Chloroplastic ascorbate peroxidase; hydrogen perox	93.55
1u2k_A	309	Peroxidase/catalase HPI; KATG, catalase-peroxidase	93.54
3q3u_A	338	Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A	92.89
3n3r_A	748	Catalase-peroxidase; E198A variant, tuberclosis, i	92.66
3m5q_A	357	Manganese peroxidase 1; heme, Mn(II)-binding site,	92.15
1itk_A	731	Catalase-peroxidase; heme protein, oxidoreductase;	91.94
3fmu_A	331	VersatIle peroxidase VPL2; class II (fungal) perox	91.62
3ut2_A	764	Catalase-peroxidase 2; KATG, fungal, heme enzyme,	91.04
2cca_A	740	Peroxidase/catalase T; oxidoreductase, catalase-pe	90.96
2vcn_A	261	Ascorbate peroxidase; INH, APX, isoniazid, oxidore	90.53
1itk_A	731	Catalase-peroxidase; heme protein, oxidoreductase;	90.04
2cca_A	740	Peroxidase/catalase T; oxidoreductase, catalase-pe	89.75
1ub2_A	720	Catalase-peroxidase; KATG, cyanobacteria, oxidored	88.49
1ub2_A	720	Catalase-peroxidase; KATG, cyanobacteria, oxidored	86.23
1gwu_A	309	Peroxidase C1A; oxidoreductase, glycoprotein, heme	83.16
1pa2_A	306	Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45	82.92
1llp_A	343	LIP4.15, lignin peroxidase; heme protein, glyco pr	82.38
2e39_A	344	Peroxidase; heme protein, coordination geometry of	82.23
1bgp_A	309	Barley grain peroxidase; chromoprotein, oxidoreduc	81.24
1qgj_A	300	Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A	81.22
1fhf_A	304	SEED coat peroxidase; oxidoreductase; HET: HEM; 2.	80.31

>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana}

Probab=99.18  E-value=1.2e-11  Score=103.92  Aligned_cols=55  Identities=65%  Similarity=0.918  Sum_probs=51.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC-----cee
Q 046960           83 ADLIQRRQRSEFISNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP-----LRF  137 (165)
Q Consensus        83 AdLiqrrQrseFqs~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg-----~~~  137 (165)
                      |||||||||++|++.++..++++|+.+|...|.+|||+..|+.|||+.+|.|     |+|
T Consensus         2 ~~~~~~~~~~~~~~iV~~~v~~~~~~~~~~a~~llRLafHDc~Ty~~~~~~gGcDGSIll   61 (268)
T 3rrw_A            2 ADLNQRRQRSEFQSKIKILLSTTIKAKPELVPSLLKLALNDAMTYDKATKSGGANGSIRF   61 (268)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCBTTTTBCSSSSGGGS
T ss_pred             chHhhhhccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHhhcCcCCCCCCCCCCeeeee
Confidence            7999999999999999999999999999999999999999999999999998     777

>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ...

Probab=96.22  E-value=0.0035  Score=52.73  Aligned_cols=42  Identities=24%  Similarity=0.395  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhhcCCC------chhHHHHHHhccccccccccCCC------cee
Q 046960           96 SNIKETLQTALKGNPD------LIPSLLTLALNDAMTYDKVRTKP------LRF  137 (165)
Q Consensus        96 s~ik~~L~~ai~~~pe------liPslltLaLNDA~TYDKaTKtg------~~~  137 (165)
                      ..+|..|.++|+.++|      +.|.+||||..||.|||+.+|+|      |||
T Consensus        20 ~~v~~di~~~~~~~~~~~d~~~~~~~lvRlawHda~Tyr~~d~~GGadg~~ir~   73 (294)
T 3e2o_A           20 QKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRF   73 (294)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHHTTCBTTTTBSSSTTCGGGS
T ss_pred             HHHHHHHHHHHhcCcccccccchHHHHHHHHHHHhcccccCCCCCCCCcceecc
Confidence            4578889999999984      79999999999999999999998      888

>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A*

Probab=95.90  E-value=0.0056  Score=50.34  Aligned_cols=39  Identities=23%  Similarity=0.448  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960           96 SNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP  134 (165)
Q Consensus        96 s~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg  134 (165)
                      ..+|..+.++++.+|-++|++|||+..||+|||.-.+.|
T Consensus        10 ~~vr~~v~~~~~~~~~~~a~llRl~fH~a~t~dc~~~~g   48 (271)
T 3riv_A           10 RALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDG   48 (271)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTCBTTTTBS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHhcccCCCCCCCCC
Confidence            467889999999999999999999999999999988765

>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*

Probab=94.61  E-value=0.023  Score=53.77  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=41.4

Q ss_pred             HHHHH----HHHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceee
Q 046960           91 RSEFI----SNIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus        91 rseFq----s~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      +.||.    ..+|..|.+.++..+|        +.|.+||||..||.|||+.+++|      |||.
T Consensus        69 ~~~~~~~D~~~vk~~I~~~~~~~~~~wp~d~g~~gp~lvRlawHdagTy~~~d~~GGa~ggsirf~  134 (748)
T 3n3r_A           69 AQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAGTYRTADGRGGAGEGQQRFA  134 (748)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred             HHHhhHhhHHHHHHHHHHHHhcccccccccccchhHHHHHHhhcccccccCCCCCCCCCCCceecC
Confidence            55564    4689999999998875        79999999999999999999997      8885

>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*

Probab=94.46  E-value=0.045  Score=51.72  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=34.1

Q ss_pred             HHHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee
Q 046960          100 ETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus       100 ~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      ..|+..|-+.-..+|.+||||..||.|||+.+|+|      |||.
T Consensus       447 ~~lk~~~~~~g~~~~~lvRlAwhdA~Tf~~sd~~GGanGasIrl~  491 (737)
T 3vli_A          447 AELKEEILDSDLSVSQLVKTAWASASTYRDSDKRGGANGARLRLE  491 (737)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHTTCBTTTTBCSSTBCGGGST
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHhhcccccccCCcCCCCcceEEec
Confidence            34677777788899999999999999999999997      8884

>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A*

Probab=93.89  E-value=0.068  Score=50.54  Aligned_cols=48  Identities=25%  Similarity=0.405  Sum_probs=40.1

Q ss_pred             HHHHH----HHHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceee
Q 046960           91 RSEFI----SNIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus        91 rseFq----s~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      +.||.    ..+|..|.+.|+...|        +.|.+||||..||.|||+.+++|      |||.
T Consensus        53 ~~~~~~~d~~~vk~di~~~~~~~~~~wpad~g~~gp~lvRlawHdagTy~~~d~~GGanggsirf~  118 (737)
T 3vli_A           53 AEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFA  118 (737)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCSSSTTCGGGST
T ss_pred             HHHhccccHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHhccccccCCCCCCCCCeEecc
Confidence            44554    4688899999997654        69999999999999999999997      8885

>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}

Probab=93.88  E-value=0.081  Score=50.26  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceee
Q 046960           95 ISNIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus        95 qs~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      ...+|..|.+.|+...|        +.|.+||||..||.|||+.+++|      |||.
T Consensus        84 ~~avk~di~~~~~~~~~~wp~d~g~~gp~lvRlawHdagTy~~~d~~GGanggsirf~  141 (764)
T 3ut2_A           84 YEAVKKDIAALMTESQDWWPADFGNYGGLFVRMAXHSAGTYRAMDGRGGGGMGQQRFA  141 (764)
T ss_dssp             HHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred             HHHHHHHHHHHHhcccccccccccchHHHHHHHhhcccccccCCCCCCCCCCCeeecc
Confidence            35688999999997764        69999999999999999999997      8885

>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1

Probab=93.55  E-value=0.036  Score=46.41  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHhccccccccccC
Q 046960           96 SNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRT  132 (165)
Q Consensus        96 s~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTK  132 (165)
                      ..+++.|++.++ ++-+.|++|||+.-|+.|||+.++
T Consensus         9 ~~vr~~i~~~~~-~~~~~a~llRL~FHDc~ty~~~~~   44 (295)
T 1iyn_A            9 KSAREDIKELLK-TKFCHPIMVRLGWHDAGTYNKNIE   44 (295)
T ss_dssp             HHHHHHHHHHHH-HHCCHHHHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHHHHHh-CCCchHHHHHHHHHHHhccccccc
Confidence            346666776665 578999999999999999999986

>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A

Probab=93.54  E-value=0.045  Score=46.17  Aligned_cols=40  Identities=18%  Similarity=0.169  Sum_probs=34.4

Q ss_pred             HHHHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee
Q 046960           99 KETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus        99 k~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      -..|+++|...|-.+|.+|||+.-|+.|||..+++|      |||.
T Consensus        33 i~~l~~~i~~~~~~~a~llRlafHDc~t~~~sd~~gG~nGa~ir~~   78 (309)
T 1u2k_A           33 IIDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALM   78 (309)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHHHHTTCCTTCSSCSSTBCGGGST
T ss_pred             HHHHHHHHHHCCCcHHHHHhhcccccccccCcCCCCCCCcccccCc
Confidence            456777888899999999999999999999988875      7774

>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0

Probab=92.89  E-value=0.11  Score=44.73  Aligned_cols=57  Identities=14%  Similarity=0.087  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhcCCCc---hhHHHHHHhccccccccc------cCCC------ceee----------hhHHHHHHHHHHH
Q 046960           97 NIKETLQTALKGNPDL---IPSLLTLALNDAMTYDKV------RTKP------LRFK----------CLVDVIKFLYLLW  151 (165)
Q Consensus        97 ~ik~~L~~ai~~~pel---iPslltLaLNDA~TYDKa------TKtg------~~~~----------~~~~~~~~~~~~~  151 (165)
                      .++..|++.++.....   ++.+||||..||.|||+.      +|.|      |+|.          -|-+||..|--.-
T Consensus        20 ~V~~di~~~l~~~g~~g~~a~~lvRlafHda~Ty~~~~~~~g~~~~GGcDGSill~~~~Ek~~~~N~~L~~vi~~lk~~~   99 (338)
T 3q3u_A           20 PVLDDIQANLFNGGKCEEEAHEAVRLTFHDAVGFSLAAQKAGKFGGGGADGSILAFSDIETAFIPNFGLEFTTEGFIPFA   99 (338)
T ss_dssp             HHHHHHHHHTSTTTCCSHHHHHHHHHHHHHHTSCCHHHHHTTSCCCCSSSSHHHHTHHHHTTSGGGTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCchHHHHHHHHHHhhhhcccccccccccCCCCCCCCeeeeCCcccccCccccCHHHHHHHHHHHH
Confidence            4677788888766555   449999999999999998      4666      5552          3446666555444


Q ss_pred             HH
Q 046960          152 RK  153 (165)
Q Consensus       152 ~~  153 (165)
                      .|
T Consensus       100 e~  101 (338)
T 3q3u_A          100 LA  101 (338)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*

Probab=92.66  E-value=0.14  Score=48.54  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=32.7

Q ss_pred             HHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee
Q 046960          101 TLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus       101 ~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      .|+..|-+.-.-+|.+||+|..||.|||+.+|+|      |||.
T Consensus       465 ~lk~~~~~~gl~~~~lvrlAwhdA~Tf~~sd~~GGanGa~Ir~~  508 (748)
T 3n3r_A          465 ELKAKVLASGLTVSQLVSTAWAAASTFRGSDKRGGANGARIRLA  508 (748)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHTTCCTTTCCCSSTBCGGGST
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhccccccCCCCCCCCceEEcc
Confidence            4666666667789999999999999999999998      8883

>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A*

Probab=92.15  E-value=0.12  Score=44.66  Aligned_cols=58  Identities=17%  Similarity=0.250  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhc--CCCchhHHHHHHhccccccccccC---CC------cee----------ehhHHHHHHHHHHHHHh
Q 046960           97 NIKETLQTALKG--NPDLIPSLLTLALNDAMTYDKVRT---KP------LRF----------KCLVDVIKFLYLLWRKE  154 (165)
Q Consensus        97 ~ik~~L~~ai~~--~peliPslltLaLNDA~TYDKaTK---tg------~~~----------~~~~~~~~~~~~~~~~~  154 (165)
                      .++..|++.++.  ..+++|.+|||+.-|+.|||+++.   .|      |+|          .-|-+||..+--.-.|.
T Consensus        19 ~V~~di~~~l~~~~~g~~a~~llRLafHDc~t~~~~~g~~~~gGcDGSill~~~~Ek~~~~N~gL~~vid~lk~~~e~~   97 (357)
T 3m5q_A           19 PLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKH   97 (357)
T ss_dssp             HHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHCCCTTTCGGGCCSSSCHHHHSTTTGGGSGGGTTTHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHhhccccccccCCCCCCCCccccccCCccccCCccccCHHHHHHHHHHHHHhc
Confidence            355566666653  678899999999999999998763   23      555          23557777665544443

>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3

Probab=91.94  E-value=0.2  Score=47.34  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=32.6

Q ss_pred             HHHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960           99 KETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP  134 (165)
Q Consensus        99 k~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg  134 (165)
                      ...|+.+|...|..+|.||||+..||.|||..+|+|
T Consensus       446 i~~lk~~i~~~~~~~a~LvRlafHDc~t~d~sD~~G  481 (731)
T 1itk_A          446 IAELKEEILDSDLSVSQLVKTAWASASTYRDSDKRG  481 (731)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHTTCBTTTTBC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCC
Confidence            567788888899999999999999999999998875

>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A*

Probab=91.62  E-value=0.21  Score=42.73  Aligned_cols=58  Identities=16%  Similarity=0.214  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhhcCC---CchhHHHHHHhccccccccccCCC------ceee----------hhHHHHHHHHHHHHH
Q 046960           96 SNIKETLQTALKGNP---DLIPSLLTLALNDAMTYDKVRTKP------LRFK----------CLVDVIKFLYLLWRK  153 (165)
Q Consensus        96 s~ik~~L~~ai~~~p---eliPslltLaLNDA~TYDKaTKtg------~~~~----------~~~~~~~~~~~~~~~  153 (165)
                      ..++..|++.++.+.   +.++.+|||+.-|+.||++.++.|      |+|.          -|-+||..+--...|
T Consensus        18 ~~v~~di~~~l~~~g~~g~~a~~llRLafHDc~ty~~~d~~gGcDgSill~~~~Ek~~~~N~gL~~vid~lk~~~e~   94 (331)
T 3fmu_A           18 FPILDDIQENLFDGAQCGEEVHESLRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAK   94 (331)
T ss_dssp             HHHHHHHHHHTSTTTCSSHHHHHHHHHHHHHHTCCBTTTBCCSSSSHHHHTHHHHTTSGGGTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCChHHHHHHHHHHhhcccccCCCCCCCCchhhhcCCcccccCccccCHHHHHHHHHHHHHH
Confidence            345667777776543   467799999999999999999987      6652          344666665544444

>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15}

Probab=91.04  E-value=0.22  Score=47.41  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=31.1

Q ss_pred             HHHHHhhcC-CCchhHHHHHHhccccccccccCCC------cee
Q 046960          101 TLQTALKGN-PDLIPSLLTLALNDAMTYDKVRTKP------LRF  137 (165)
Q Consensus       101 ~L~~ai~~~-peliPslltLaLNDA~TYDKaTKtg------~~~  137 (165)
                      .|+..|-+. -..+|.+||+|..||.|||+.+|+|      |||
T Consensus       478 ~lk~~~~~~~gl~~~~lvrlAwhdA~Tf~~sd~~GGanGasIrl  521 (764)
T 3ut2_A          478 KLKAAILSTDGLDVSKLASTAMACATTYRNSDKRGGCNGARIAL  521 (764)
T ss_dssp             HHHHHHHTSTTCCHHHHHHHHHHHHTTCBTTTTBCSSTBCGGGS
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHhhccccccccccCCCCcceEEe
Confidence            466666655 3568999999999999999999997      888

>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*

Probab=90.96  E-value=0.16  Score=48.02  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhhcC--------CCchhHHHHHHhccccccccccCCC------ceee
Q 046960           96 SNIKETLQTALKGN--------PDLIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus        96 s~ik~~L~~ai~~~--------peliPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      ..+|..|+++++..        +.+.|.+|||+.-|+.|||..+++|      |||.
T Consensus        74 ~~Vk~~v~~~~~~~~~~wpad~~~~~~~liRL~fHDc~t~~~sd~~gG~dggsi~~~  130 (740)
T 2cca_A           74 DALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFA  130 (740)
T ss_dssp             HHHHHHHHHHHTSCCTTSCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred             HHHHHHHHHHHhcccccccccCCccHHHHHHHHHhhcccccccCCCCCCCCcccccc
Confidence            67899999999988        7899999999999999999988764      6773

>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ...

Probab=90.53  E-value=0.11  Score=43.06  Aligned_cols=38  Identities=26%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960           96 SNIKETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP  134 (165)
Q Consensus        96 s~ik~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg  134 (165)
                      ..+++.|++++ .+|-+.|++|||+.-|+.+||..+.+|
T Consensus        28 ~~~r~~v~~~~-~d~~~aa~llRL~FHDc~gcD~s~~~g   65 (261)
T 2vcn_A           28 EKAKKKLRGFI-AEKRCAPLMLRLAAHSAGTFDKGTKTG   65 (261)
T ss_dssp             CHHHHHHHHHH-HHHTCHHHHHHHHHHHHTTCBTTTTBC
T ss_pred             HHHHHHHHHHH-hCCCchHHHHHHHHccCCCCCcccCCC
Confidence            34667777774 468999999999999999999998775

>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3

Probab=90.04  E-value=0.21  Score=47.09  Aligned_cols=43  Identities=21%  Similarity=0.343  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhhcC--------CCchhHHHHHHhccccccccccCCC------ceee
Q 046960           96 SNIKETLQTALKGN--------PDLIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus        96 s~ik~~L~~ai~~~--------peliPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      ..+|..|+++++..        +-+.|++|||+.-||.|||..+++|      |||.
T Consensus        62 ~~vk~~v~~~~~~~~~~wp~d~~~~g~~liRlafHd~~t~~~sd~~gG~dggsir~~  118 (731)
T 1itk_A           62 EAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFA  118 (731)
T ss_dssp             HHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred             HHHHHHHHHHHhcccccccccccchHHHHHHHHHhhhccccCcCCCCCCCCccccch
Confidence            57899999999987        4689999999999999999998875      6773

>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*

Probab=89.75  E-value=0.19  Score=47.49  Aligned_cols=39  Identities=13%  Similarity=0.280  Sum_probs=35.2

Q ss_pred             HHHHHHHhhcCCCchhHHHHHHhccccccccccCCC------cee
Q 046960           99 KETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRF  137 (165)
Q Consensus        99 k~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~  137 (165)
                      -..|+.+|...+-.+|.+|||+..||.||++.+|+|      |||
T Consensus       455 i~~lk~~i~~~~~~~a~LlRlafHDc~tfr~sd~~GGcDGasI~L  499 (740)
T 2cca_A          455 IASLKSQIRASGLTVSQLVSTAWAAASSFRGSDKRGGANGGRIRL  499 (740)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHTTCBTTTTBCSSTBCGGGS
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHhccccCCCCCCCCCCceeec
Confidence            367888888899999999999999999999999987      777

>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3

Probab=88.49  E-value=0.22  Score=47.00  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHhhcC--------CCchhHHHHHHhccccccccccCCC------ceee
Q 046960           96 SNIKETLQTALKGN--------PDLIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus        96 s~ik~~L~~ai~~~--------peliPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      +.+|..|+++++..        +-+.|++|||+.-||.|||....+|      |||.
T Consensus        60 ~~Vr~~v~~~~~~~~~~wp~d~~~~g~~liRLafHd~~t~~~~dg~gG~dggsirf~  116 (720)
T 1ub2_A           60 AALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYRIADGRGGAGTGNQRFA  116 (720)
T ss_dssp             STTHHHHHHHTTCCCTTSCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGST
T ss_pred             HHHHHHHHHHHhcccccccccCCccHHHHHHHHHhhhccccCcCCCCCCCccccccc
Confidence            45788999999987        5799999999999999999998875      7774

>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3

Probab=86.23  E-value=0.41  Score=45.16  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=32.4

Q ss_pred             HHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960          100 ETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP  134 (165)
Q Consensus       100 ~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg  134 (165)
                      +.|+.+|...|..+|++|||+.-|+.||+..+|+|
T Consensus       446 ~~vk~~i~~~~~~~a~LlRlafHDc~v~rg~D~~g  480 (720)
T 1ub2_A          446 QAVKDRIAASGLSISELVSTAWDSARTYRNSDKRG  480 (720)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHTTCBTTTTBC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHhHhccccCCCCCC
Confidence            67888999999999999999999999999998876

>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ...

Probab=83.16  E-value=0.83  Score=38.57  Aligned_cols=34  Identities=21%  Similarity=0.478  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhhcCCCchhHHHHHHhcccccc
Q 046960           94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMTY  127 (165)
Q Consensus        94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~TY  127 (165)
                      ..+.|+..++++++.+|.+.|++|||+.-|+.+|
T Consensus        15 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~   48 (309)
T 1gwu_A           15 VSNIVRDTIVNELRSDPRIAASILRLHFHDCFVN   48 (309)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhCCccccchhheehhhhccC
Confidence            3567889999999999999999999999999887

>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A*

Probab=82.92  E-value=0.91  Score=38.18  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHhhcCCCchhHHHHHHhccccc
Q 046960           94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMT  126 (165)
Q Consensus        94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~T  126 (165)
                      ..+.|++.++++++.+|-+.|++|||+.-|+.+
T Consensus        15 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv   47 (306)
T 1pa2_A           15 ASAIVRSTIQQALQSDTRIGASLIRLHFHDCFV   47 (306)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCccchhhhhhhhhhccc
Confidence            356789999999999999999999999999865

>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*

Probab=82.38  E-value=0.63  Score=40.04  Aligned_cols=23  Identities=9%  Similarity=0.091  Sum_probs=21.7

Q ss_pred             CCCchhHHHHHHhcccccccccc
Q 046960          109 NPDLIPSLLTLALNDAMTYDKVR  131 (165)
Q Consensus       109 ~peliPslltLaLNDA~TYDKaT  131 (165)
                      -|+.+|.+|||+.-|+.|||+.+
T Consensus        34 Cp~~~~~llRLafHDc~ty~~sd   56 (343)
T 1llp_A           34 CGAEAHESIRLVFHDSIAISPAM   56 (343)
T ss_dssp             CSHHHHHHHHHHHHHHTCCCHHH
T ss_pred             CchhHHHHHHHHHhhhhcccccc
Confidence            58889999999999999999998

>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A*

Probab=82.23  E-value=0.58  Score=40.17  Aligned_cols=23  Identities=13%  Similarity=0.325  Sum_probs=21.4

Q ss_pred             CCCchhHHHHHHhcccccccccc
Q 046960          109 NPDLIPSLLTLALNDAMTYDKVR  131 (165)
Q Consensus       109 ~peliPslltLaLNDA~TYDKaT  131 (165)
                      -|+++|.+|||+.-|+.|||+.+
T Consensus        43 Cp~~a~~llRLafHDc~vy~~sd   65 (344)
T 2e39_A           43 CESPVRKILRIVFHDAIGFSPAL   65 (344)
T ss_dssp             CSHHHHHHHHHHHHHHTCCCHHH
T ss_pred             ccHHHHHHHHHHHhhhhcccccc
Confidence            47779999999999999999998

>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1

Probab=81.24  E-value=0.79  Score=38.68  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHhcccccc
Q 046960           95 ISNIKETLQTALKGNPDLIPSLLTLALNDAMTY  127 (165)
Q Consensus        95 qs~ik~~L~~ai~~~peliPslltLaLNDA~TY  127 (165)
                      .+.|+..++++++.+|.+.|++|||+..|+.+|
T Consensus        22 e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~   54 (309)
T 1bgp_A           22 ESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQ   54 (309)
T ss_dssp             HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCccccccceEeeecccC
Confidence            467889999999999999999999999999776

>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1

Probab=81.22  E-value=1.1  Score=37.63  Aligned_cols=34  Identities=21%  Similarity=0.408  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhhcCCCchhHHHHHHhcccccc
Q 046960           94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMTY  127 (165)
Q Consensus        94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~TY  127 (165)
                      ..+.++..++++++.+|.+.|++|||+.-|+.++
T Consensus        14 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~   47 (300)
T 1qgj_A           14 LVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVN   47 (300)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCccchheeeeecccC
Confidence            3567889999999999999999999999999765

>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1

Probab=80.31  E-value=0.92  Score=38.14  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhhcCCCchhHHHHHHhcccccc
Q 046960           94 FISNIKETLQTALKGNPDLIPSLLTLALNDAMTY  127 (165)
Q Consensus        94 Fqs~ik~~L~~ai~~~peliPslltLaLNDA~TY  127 (165)
                      ..+.|++.++++++.+|.+.|++|||+.-|+.++
T Consensus        14 ~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~   47 (304)
T 1fhf_A           14 LFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQ   47 (304)
T ss_dssp             HHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhCCcchhhhhhheeeecccC
Confidence            3567899999999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d2euta1	291	Cytochrome c peroxidase, CCP {Baker's yeast (Sacch	96.63
d1u2ka_	292	Catalase-peroxidase KatG {Burkholderia pseudomalle	96.49
d1ub2a2	294	Catalase-peroxidase KatG {Synechococcus sp. pcc 79	96.45
d2ccaa2	285	Catalase-peroxidase KatG {Mycobacterium tuberculos	96.21
d1itka2	308	Catalase-peroxidase KatG {Archaeon Haloarcula mari	96.2
d1mwva2	308	Catalase-peroxidase KatG {Burkholderia pseudomalle	94.22
d1iyna_	275	Ascorbate peroxidase {Common tobacco (Nicotiana ta	93.97
d1oafa_	250	Ascorbate peroxidase {Soybean (Glycine max) [TaxId	93.69
d1itka1	406	Catalase-peroxidase KatG {Archaeon Haloarcula mari	92.73
d1mwva1	406	Catalase-peroxidase KatG {Burkholderia pseudomalle	91.68
d1ub2a1	406	Catalase-peroxidase KatG {Synechococcus sp. pcc 79	89.37
d2ccaa1	410	Catalase-peroxidase KatG {Mycobacterium tuberculos	88.24

>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Cytochrome c peroxidase, CCP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.0015  Score=52.17  Aligned_cols=42  Identities=24%  Similarity=0.365  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHhhcCCC------chhHHHHHHhccccccccccCCC------cee
Q 046960           96 SNIKETLQTALKGNPD------LIPSLLTLALNDAMTYDKVRTKP------LRF  137 (165)
Q Consensus        96 s~ik~~L~~ai~~~pe------liPslltLaLNDA~TYDKaTKtg------~~~  137 (165)
                      .+++..+...+...++      ..|.|||||..||+|||+.+++|      |||
T Consensus        17 ~~v~~~i~~~~~~~~~~~~~~~~~p~LvRlafHda~t~~~~~~~GG~ng~~ir~   70 (291)
T d2euta1          17 QKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRF   70 (291)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHHTTCBTTTTBSSSTTCGGGS
T ss_pred             HHHHHHHHHHHhcchhhccccccHHHHHHHHHhhhccccCCCCCCCCCCCceeC
Confidence            4667777777777764      37999999999999999999998      777

>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=96.49  E-value=0.0019  Score=51.61  Aligned_cols=55  Identities=18%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             HHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee---------hhHHHHHHHHHHHHHhCC
Q 046960          102 LQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK---------CLVDVIKFLYLLWRKEGN  156 (165)
Q Consensus       102 L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~---------~~~~~~~~~~~~~~~~~~  156 (165)
                      |++.|...--.+|.|||||--||+|||+.+++|      |||.         +|--++++|+-+=.|.++
T Consensus        19 lk~~i~~~g~~~~~lvRlAWHsAgTy~~~d~~GGanGa~iR~~pe~~~~~N~~l~~a~~~L~~ik~k~~~   88 (292)
T d1u2ka_          19 LKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGK   88 (292)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHTTCCTTCSSCSSTBCGGGSTTGGGCGGGTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHhcCCcHHHHHHHHHhhhccccCCCCCCCCCCccccccccccchhhhhhhHHHHHHhhhhhhccc
Confidence            566676667788999999999999999999999      8885         555577777776666664

>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Synechococcus sp. pcc 7942 [TaxId: 1140]

Probab=96.45  E-value=0.00071  Score=54.40  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             HHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceeehh--------HHHHHHHHHHHHHhC
Q 046960          101 TLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFKCL--------VDVIKFLYLLWRKEG  155 (165)
Q Consensus       101 ~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~~~--------~~~~~~~~~~~~~~~  155 (165)
                      .|++.|....-.+|.+||||--||.|||+.+++|      |||.=.        .++-+-+.++|-++.
T Consensus        21 ~lk~~i~~~~~~~~~lvRlAWHsAGTY~~~d~~GG~ngg~iRf~pe~~~~~N~~l~la~~~~l~~~~k~   89 (294)
T d1ub2a2          21 AVKDRIAASGLSISELVSTAWDSARTYRNSDKRGGANGARIRLAPQKDWEGNEPDRLPKVLAVLEGISA   89 (294)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHTTCBTTTTBCSSTBTGGGSTTGGGCGGGCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccccccCcCCCCCcchhhhcCcccccccccccchhhhheeecccccc
Confidence            3556665566789999999999999999999998      999653        223344556665543

>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.21  E-value=0.0032  Score=50.77  Aligned_cols=53  Identities=17%  Similarity=0.269  Sum_probs=40.8

Q ss_pred             HHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee------------hhHHHHHHHHHHHHH
Q 046960          101 TLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK------------CLVDVIKFLYLLWRK  153 (165)
Q Consensus       101 ~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~------------~~~~~~~~~~~~~~~  153 (165)
                      .|++-|...-=.+|.+||||--+|.|||+.+++|      |||.            -|-.++++|.-+-.|
T Consensus        22 alk~~i~~~g~~~~~lVRlAWHsAgTY~~~d~~GG~ngg~iRf~p~~~w~~~~~NagL~~a~~~L~pik~k   92 (285)
T d2ccaa2          22 SLKSQIRASGLTVSQLVSTAWAAASSFRGSDKRGGANGGRIRLQPQVGWEVNDPDGDLRKVIRTLEEIQES   92 (285)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHTTCBTTTTBCSSTBCGGGSTTGGGCSTTCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhhhccccCcCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHhh
Confidence            4555554334457999999999999999999998      9994            466777887766555

>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.20  E-value=0.0029  Score=51.29  Aligned_cols=40  Identities=20%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             HHHHHHHhhcCCCchhHHHHHHhccccccccccCCC------ceee
Q 046960           99 KETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP------LRFK  138 (165)
Q Consensus        99 k~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg------~~~~  138 (165)
                      ...|++.|...--.+|-+||||--||.|||+.+++|      |||.
T Consensus        23 i~~lk~~i~~~g~~~p~lvRLAWHsAgTY~~~d~rGGaNGa~iRf~   68 (308)
T d1itka2          23 IAELKEEILDSDLSVSQLVKTAWASASTYRDSDKRGGANGARLRLE   68 (308)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHTTCBTTTTBCCSTBCGGGST
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHhhhccccCCCCCCCCCccccccc
Confidence            345666665555668999999999999999999998      9998

>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=94.22  E-value=0.016  Score=47.00  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=25.4

Q ss_pred             chhHHHHHHhccccccccccCCC------ceeeh
Q 046960          112 LIPSLLTLALNDAMTYDKVRTKP------LRFKC  139 (165)
Q Consensus       112 liPslltLaLNDA~TYDKaTKtg------~~~~~  139 (165)
                      -+|-+||||--||.|||+.+++|      |||.=
T Consensus        36 ~~~~lvRlAWH~AgTy~~~d~~GGanGa~iRf~p   69 (308)
T d1mwva2          36 TVSQLVSTAWAAASTFRGSDKRGGANGARIRLAP   69 (308)
T ss_dssp             CHHHHHHHHHHHHTTCBTTTTBCSSTBCGGGSTT
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCchhhhcchh
Confidence            48999999999999999999998      88853

>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Ascorbate peroxidase
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.97  E-value=0.013  Score=46.00  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=20.1

Q ss_pred             CCchhHHHHHHhccccccccccC
Q 046960          110 PDLIPSLLTLALNDAMTYDKVRT  132 (165)
Q Consensus       110 peliPslltLaLNDA~TYDKaTK  132 (165)
                      +-..|.+|||+..|++|||+.+.
T Consensus        22 ~~~~p~llRlafHd~~t~~~~~~   44 (275)
T d1iyna_          22 KFCHPIMVRLGWHDAGTYNKNIE   44 (275)
T ss_dssp             HCCHHHHHHHHHHHHTTCCTTCC
T ss_pred             CCchHHHHHHHHhhhcCcCCCCC
Confidence            45689999999999999999864

>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Ascorbate peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=93.69  E-value=0.014  Score=45.54  Aligned_cols=35  Identities=29%  Similarity=0.350  Sum_probs=28.0

Q ss_pred             HHHHHHHhhcCCCchhHHHHHHhccccccccccCCC
Q 046960           99 KETLQTALKGNPDLIPSLLTLALNDAMTYDKVRTKP  134 (165)
Q Consensus        99 k~~L~~ai~~~peliPslltLaLNDA~TYDKaTKtg  134 (165)
                      +..|+..+ .++.+.|.+|||+..|++|||+.++.|
T Consensus        20 ~~~~~~~~-~~~~~ap~llRl~FHDc~tf~~~~~~g   54 (250)
T d1oafa_          20 KKKLRGFI-AEKRCAPLMLRLAWHSAGTFDKGTKTG   54 (250)
T ss_dssp             HHHHHHHH-HHHTCHHHHHHHHHHHHTTCBTTTTBC
T ss_pred             HHHHHHHH-hccCcHHHHHHHHHcccccccCCCCCC
Confidence            44444333 357899999999999999999999987

>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.73  E-value=0.075  Score=44.92  Aligned_cols=61  Identities=23%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceeehhH---------HHHHHHHHHHHH
Q 046960           97 NIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFKCLV---------DVIKFLYLLWRK  153 (165)
Q Consensus        97 ~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~~~~---------~~~~~~~~~~~~  153 (165)
                      .+|.-|.+.++...|        +.|.++|||--+|.|||..+++|      |||.=..         -++++|..+=.|
T Consensus        46 ~~~~di~~l~~~~~~~wpaD~g~~gP~lVRlAWHsAgTYR~sD~RGGanGariRfaPe~sW~~N~~LdkAr~lLepIK~k  125 (406)
T d1itka1          46 AVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQK  125 (406)
T ss_dssp             HHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHhcccccCcccccccchhHhhhhhhhhcceeccCCCCCCCCceeCchhhhccCCCcccHHHHHHHHHHHHh
Confidence            467778888776543        89999999999999999999999      9986543         344554444446


Q ss_pred             hCCc
Q 046960          154 EGNK  157 (165)
Q Consensus       154 ~~~~  157 (165)
                      -|++
T Consensus       126 yg~~  129 (406)
T d1itka1         126 YGQK  129 (406)
T ss_dssp             HGGG
T ss_pred             cCcc
Confidence            6655

>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=91.68  E-value=0.12  Score=43.81  Aligned_cols=62  Identities=21%  Similarity=0.306  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceeeh---------hHHHHHHHHHHHHH
Q 046960           97 NIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFKC---------LVDVIKFLYLLWRK  153 (165)
Q Consensus        97 ~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~~---------~~~~~~~~~~~~~~  153 (165)
                      .+|+-|.+.++-..|        +.|.++|||-.+|.||+..+++|      |||.=         |--++++|.-+=.|
T Consensus        45 alk~di~~l~~~s~d~wpaD~G~ygp~lVRlAWHsAgTYR~~D~RGGanGg~iRfaPe~sW~~N~~Ldkar~lLepIK~k  124 (406)
T d1mwva1          45 AVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQK  124 (406)
T ss_dssp             HHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHhcccccCccccccchhHHHHHHHHhhccccccCCCCCCCCceeCCchhhcCCCchhHHHHHHHHHHHHHH
Confidence            466777777765554        78999999999999999999999      89863         44455555544455


Q ss_pred             hCCce
Q 046960          154 EGNKL  158 (165)
Q Consensus       154 ~~~~~  158 (165)
                      -|+++
T Consensus       125 y~~~I  129 (406)
T d1mwva1         125 YGRAI  129 (406)
T ss_dssp             HGGGS
T ss_pred             hCCCc
Confidence            56653

>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Synechococcus sp. pcc 7942 [TaxId: 1140]

Probab=89.37  E-value=0.16  Score=42.95  Aligned_cols=67  Identities=27%  Similarity=0.339  Sum_probs=47.6

Q ss_pred             HHHHH---HHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceeeh---------hHHHHH
Q 046960           92 SEFIS---NIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFKC---------LVDVIK  145 (165)
Q Consensus        92 seFqs---~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~~---------~~~~~~  145 (165)
                      .+|.+   .+|.-|++.++..-|        +.|.++|+|--+|.||+...++|      |||.=         |--+++
T Consensus        33 ~~~~~ld~a~k~Dl~~l~~~s~~~wpaD~G~ygP~lVRlAWhsAgTYR~sD~RGGanGgriRfaP~~sW~~N~~LdkAr~  112 (406)
T d1ub2a1          33 EEVQKLDAALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYRIADGRGGAGTGNQRFAPLNSWPDNTNLDKARR  112 (406)
T ss_dssp             HHHTTSCSTTHHHHHHHTTCCCTTSCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCccccCcchhHHHhhhhhhccccccCCCCCCCCCCcccCchhhccccchHHHHHHH
Confidence            44444   367778888886643        59999999999999999999998      99864         333445


Q ss_pred             HHHHHHHHhCCce
Q 046960          146 FLYLLWRKEGNKL  158 (165)
Q Consensus       146 ~~~~~~~~~~~~~  158 (165)
                      +|..+=.|-|+++
T Consensus       113 lL~pIK~ky~~~I  125 (406)
T d1ub2a1         113 LLWPIKQKYGNKL  125 (406)
T ss_dssp             HTHHHHHHHGGGS
T ss_pred             HHHHHHhhcCCcc
Confidence            4444445556553

>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Catalase-peroxidase KatG
domain: Catalase-peroxidase KatG
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.24  E-value=0.2  Score=42.59  Aligned_cols=62  Identities=21%  Similarity=0.313  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhhcCCC--------chhHHHHHHhccccccccccCCC------ceeehhH---------HHHHHHHHHHHH
Q 046960           97 NIKETLQTALKGNPD--------LIPSLLTLALNDAMTYDKVRTKP------LRFKCLV---------DVIKFLYLLWRK  153 (165)
Q Consensus        97 ~ik~~L~~ai~~~pe--------liPslltLaLNDA~TYDKaTKtg------~~~~~~~---------~~~~~~~~~~~~  153 (165)
                      .+|.-|.+.++...+        +.|.++|+|--+|.||+..+++|      |||.=+.         -..++|..+=.|
T Consensus        50 a~~~d~~~l~~~s~~wwpaD~G~ygP~lVRlAWHsAGTYR~~DgRGGanGg~iRfaPe~sWp~N~~LdkAr~LL~piK~k  129 (410)
T d2ccaa1          50 ALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKK  129 (410)
T ss_dssp             HHHHHHHHHHTSCCTTSCCGGGCCHHHHHHHHHHHHTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHhcccccCcccccccccchhhhhhhhhceeecccCCCCCCCCeeccchhccccccchHHHHHHHHHHHHHh
Confidence            467778888886543        89999999999999999999999      8996542         234444444456


Q ss_pred             hCCce
Q 046960          154 EGNKL  158 (165)
Q Consensus       154 ~~~~~  158 (165)
                      .|+++
T Consensus       130 y~~~i  134 (410)
T d2ccaa1         130 YGKKL  134 (410)
T ss_dssp             HGGGS
T ss_pred             ccccc
Confidence            66653