Citrus Sinensis ID: 047005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MACSTVLRCVFLTESYRPLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSARRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEcccccccHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEEEcEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHEEEcccccccccccEEEEEcccccccccccccccEEccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHccccccccccEEEEEcccccccHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEEEccEEEEc
Coil and Loop (DISEMBL)
macstvlrcvfltesyrplhrhnralfslplttvgstpltrLICINYGRIRARNFHSARRIHlncshnesqspsaddsdqgppQEAVLKAISEVsktegrvgqttNVVIGgtvaddstnEWLALDrkvnsyptvrgftaigsggdDFVQAMVVAVESVIqkpipegrvkqkvssrgkyvsvnigpvqvss
Flexible Loop (DISEMBL)
macstvlrCVFLTesyrplhrhnralfslplttvgstplTRLICINYGRIRARNFHSARRIHLNCSHNEsqspsaddsdqgPPQEAVLKAIsevsktegrvgqttnvviggtvaddstnEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESviqkpipegrvkqkvssrgkyvsvnigpvqvss
Low Complexity Region (SEG)
MACSTVLRCVFLTESYRPLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSARRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS
Disordered region (IsUnstruct)
**CSTVLRCVFLTESYRPLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSARRIHLNC***********************************VGQTTNVVIGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPI***************************
Disordered Region (DISOPRED)
*******RCVFLTESYRPLHRHNRALFSLPLT**************************************************************************VVIGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQK****************YVSVNIGPVQVS*
Disordered Region (DISEMBL)
MACSTVLRCVFLTESYRPLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSARRIHLNC*******************EAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEG**********KYVSVNIGPVQVSS
Disordered Region (DISPRO)
*ACSTVLRCVFLTESYRPLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSARRIHLNCSH**************PPQEAVLK*ISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MACSTVLRCVFLTESYRPLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSARRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
225425414	200	PREDICTED: uncharacterized protein LOC10	0.942	0.895	0.731	6e-65
351725721	186	uncharacterized protein LOC100499928 [Gl	0.857	0.876	0.640	2e-58
449435089	214	PREDICTED: uncharacterized protein LOC10	0.942	0.836	0.659	5e-58
359806436	186	uncharacterized protein LOC100795278 [Gl	0.857	0.876	0.635	5e-58
224072582	212	predicted protein [Populus trichocarpa]	0.931	0.834	0.617	9e-56
357462991	205	hypothetical protein MTR_3g085280 [Medic	0.915	0.848	0.62	1e-55
224057738	141	predicted protein [Populus trichocarpa]	0.605	0.815	0.921	4e-55
18396311	202	uncharacterized protein [Arabidopsis tha	0.915	0.861	0.598	5e-53
238478651	230	uncharacterized protein [Arabidopsis tha	0.915	0.756	0.598	7e-53
110737152	202	hypothetical protein [Arabidopsis thalia	0.915	0.861	0.598	9e-53

>gi|225425414|ref|XP_002277728.1| PREDICTED: uncharacterized protein LOC100248862 [Vitis vinifera] gi|297738458|emb|CBI27659.3| unnamed protein product [Vitis vinifera]

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 139/190 (73%), Positives = 156/190 (82%), Gaps = 11/190 (5%)

Query: 1   MACSTVLRCVFLTESYRPLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSARR 60
           MAC T+LR VFLTE +RP+H +  ++F  PL T GS+   RL C    RI AR    ARR
Sbjct: 1   MACRTMLRSVFLTEPWRPVHSNRVSVFP-PLCTRGSSSSRRLNC--ECRI-AR----ARR 52

Query: 61  IHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNE 120
             ++CS+ E+  PS+ D DQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTV DDSTNE
Sbjct: 53  TLVSCSNGET--PSSQD-DQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVTDDSTNE 109

Query: 121 WLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVS 180
           WLALD+KVNSYPTVRGFTAIG+GGDDFVQAMVVAVESV+Q PIPEG VKQK+SSRGKYVS
Sbjct: 110 WLALDQKVNSYPTVRGFTAIGTGGDDFVQAMVVAVESVLQHPIPEGHVKQKLSSRGKYVS 169

Query: 181 VNIGPVQVSS 190
           VNIGPV+V S
Sbjct: 170 VNIGPVRVIS 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725721|ref|NP_001238126.1| uncharacterized protein LOC100499928 [Glycine max] gi|255627741|gb|ACU14215.1| unknown [Glycine max]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 141/192 (73%), Gaps = 29/192 (15%)

Query: 1   MACSTVLRCVFLTESYR--PLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSA 58
           MAC ++LR   L E ++  PLH  NR                         +RA  F   
Sbjct: 1   MACRSMLRSSILVEPFQLQPLHFSNRP------------------------VRACPFRRG 36

Query: 59  RRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDST 118
           + + L CS NE+  PS+ D DQGPPQEAVLKAISEVSK EGRVGQTTN+VIGGTV+DDST
Sbjct: 37  KGVTLRCSSNET--PSSQD-DQGPPQEAVLKAISEVSKAEGRVGQTTNMVIGGTVSDDST 93

Query: 119 NEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKY 178
           NEWL LD+KVNSYPTVRGFTAIG+GG+DFVQAMVVAVESVIQ+PIP+GRVKQK+S+RGKY
Sbjct: 94  NEWLTLDQKVNSYPTVRGFTAIGTGGEDFVQAMVVAVESVIQQPIPQGRVKQKLSARGKY 153

Query: 179 VSVNIGPVQVSS 190
           VSVNIGPVQV S
Sbjct: 154 VSVNIGPVQVVS 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435089|ref|XP_004135328.1| PREDICTED: uncharacterized protein LOC101214536 [Cucumis sativus] gi|449494949|ref|XP_004159692.1| PREDICTED: uncharacterized LOC101214536 [Cucumis sativus]

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 120/182 (65%), Positives = 144/182 (79%), Gaps = 3/182 (1%)

Query: 10  VFLTESYRPLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSARRIHLNCSHNE 69
           +FLTE  RPLH    +  S  + T  S    RL C N  RI AR FH ++   LNCS+++
Sbjct: 13  IFLTEPSRPLHFSPSSSSSSSIRTNRSFS-HRLYC-NARRINARGFHFSKPTLLNCSYDD 70

Query: 70  SQSPSADDSD-QGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKV 128
           +QS S+ + D Q PPQEAVLKAISEVSKTEGRVG TTN+V+GGTV  DS+NEWLALD+KV
Sbjct: 71  TQSTSSSNQDGQDPPQEAVLKAISEVSKTEGRVGHTTNMVLGGTVTSDSSNEWLALDQKV 130

Query: 129 NSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQV 188
           NSYP VRGFTAIG+GGDDFVQ+MVVAVESVIQ+PIPEG+V+ K+S++GKY+SVNIGPVQV
Sbjct: 131 NSYPGVRGFTAIGTGGDDFVQSMVVAVESVIQQPIPEGKVRHKLSAKGKYISVNIGPVQV 190

Query: 189 SS 190
            S
Sbjct: 191 IS 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806436|ref|NP_001240989.1| uncharacterized protein LOC100795278 [Glycine max] gi|255645459|gb|ACU23225.1| unknown [Glycine max]

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 140/192 (72%), Gaps = 29/192 (15%)

Query: 1   MACSTVLRCVFLTESYR--PLHRHNRALFSLPLTTVGSTPLTRLICINYGRIRARNFHSA 58
           MAC ++LR   L E ++  PLH  NR                         +RA  F   
Sbjct: 1   MACRSMLRSSILVEPFQLQPLHFSNRP------------------------VRAYPFRRG 36

Query: 59  RRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDST 118
           + + L CS NE+  PS  D DQGPPQEAVLKAISEVSK EGRVGQTTN+VIGGTV+DDS+
Sbjct: 37  KGLTLRCSSNET--PSFQD-DQGPPQEAVLKAISEVSKAEGRVGQTTNMVIGGTVSDDSS 93

Query: 119 NEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKY 178
           NEWL LD+KVNSYPTVRGFTAIG+GG+DFVQAMVVAVESVIQ+PIP+GRVKQK+S+RGKY
Sbjct: 94  NEWLTLDQKVNSYPTVRGFTAIGTGGEDFVQAMVVAVESVIQQPIPQGRVKQKLSARGKY 153

Query: 179 VSVNIGPVQVSS 190
           VSVNIGPVQV S
Sbjct: 154 VSVNIGPVQVVS 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072582|ref|XP_002303792.1| predicted protein [Populus trichocarpa] gi|222841224|gb|EEE78771.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 126/204 (61%), Positives = 145/204 (71%), Gaps = 27/204 (13%)

Query: 1   MACSTVLRCVFLTESYR------PLHRHNRALFSLPLT-TVG--STPLTRLICINYGRIR 51
           M C +VLR V  TE++       PLH +   ++S     TVG  S+  T         IR
Sbjct: 1   MVCRSVLRSVLTTEAWMMMMMIPPLHPNRAIIYSFSSARTVGFSSSKTTS--------IR 52

Query: 52  ARNFHSARR-----IHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTN 106
           A   H   R     ++  CS+N     +  D DQ PPQEAVLKAISEVSKT+ RVGQTTN
Sbjct: 53  APESHHFGRTKPALVNCFCSYN-----NEGDEDQEPPQEAVLKAISEVSKTQARVGQTTN 107

Query: 107 VVIGGTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEG 166
           VVIGGTV DDST+EWLALD+KVNSYPTVRGFTAIG+GGDDFVQAMV+AVESVIQ+PIPEG
Sbjct: 108 VVIGGTVVDDSTDEWLALDKKVNSYPTVRGFTAIGTGGDDFVQAMVIAVESVIQQPIPEG 167

Query: 167 RVKQKVSSRGKYVSVNIGPVQVSS 190
           +V+QKVSSRGKYVSVNIGPVQV S
Sbjct: 168 QVRQKVSSRGKYVSVNIGPVQVVS 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462991|ref|XP_003601777.1| hypothetical protein MTR_3g085280 [Medicago truncatula] gi|355490825|gb|AES72028.1| hypothetical protein MTR_3g085280 [Medicago truncatula] gi|388510352|gb|AFK43242.1| unknown [Medicago truncatula]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/200 (62%), Positives = 143/200 (71%), Gaps = 26/200 (13%)

Query: 1   MACSTVLRCVFLTE----------SYRPLHRHNRALFSLPLTTVGSTPLTRLICINYGRI 50
           MAC ++LR   + E           ++PL      LF+L     G        C     I
Sbjct: 1   MACRSMLRSAMIVEPLQFQFQFQFQFKPL------LFNLKPNKRGG-----FRCRT---I 46

Query: 51  RARNFHSARRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIG 110
           +AR FH    + L CS N++ S S  D DQGPPQEAVLKAISEVSKTEGR+GQTTN+VIG
Sbjct: 47  KARPFHRGNGV-LRCSRNDTPSSSFHD-DQGPPQEAVLKAISEVSKTEGRIGQTTNMVIG 104

Query: 111 GTVADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQ 170
           GTV DDSTNEW+ALD+KVN+YPTVRGFTAIG+GGDDFVQAMVVAVESVIQ+PIP+G VK 
Sbjct: 105 GTVTDDSTNEWVALDKKVNTYPTVRGFTAIGTGGDDFVQAMVVAVESVIQQPIPQGSVKH 164

Query: 171 KVSSRGKYVSVNIGPVQVSS 190
           KVS+RGKYVSVNIGPVQV S
Sbjct: 165 KVSARGKYVSVNIGPVQVVS 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057738|ref|XP_002299308.1| predicted protein [Populus trichocarpa] gi|222846566|gb|EEE84113.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 106/115 (92%), Positives = 112/115 (97%)

Query: 76  DDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVADDSTNEWLALDRKVNSYPTVR 135
           DD DQ PPQEAVLKAISEVS+TEGRVGQTTNVVIGGTVADDSTNEWLALD+KVNSYPTVR
Sbjct: 6   DDQDQDPPQEAVLKAISEVSRTEGRVGQTTNVVIGGTVADDSTNEWLALDKKVNSYPTVR 65

Query: 136 GFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS 190
           GFTAIG+GGDDFVQAMV+AVESVIQ+PIPEGRV+QKVSSRGKYVSVNIGPVQV S
Sbjct: 66  GFTAIGTGGDDFVQAMVIAVESVIQQPIPEGRVRQKVSSRGKYVSVNIGPVQVVS 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396311|ref|NP_564282.1| uncharacterized protein [Arabidopsis thaliana] gi|9802544|gb|AAF99746.1|AC004557_25 F17L21.17 [Arabidopsis thaliana] gi|21593474|gb|AAM65441.1| unknown [Arabidopsis thaliana] gi|26451020|dbj|BAC42616.1| unknown protein [Arabidopsis thaliana] gi|149944343|gb|ABR46214.1| At1g27385 [Arabidopsis thaliana] gi|332192699|gb|AEE30820.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 137/197 (69%), Gaps = 23/197 (11%)

Query: 1   MACSTVLRCVFLTESYRPLHRHNRALFSLPLTTV-----GSTPLTRLICINYGRIRARNF 55
           MAC T+LR VF++ES R      R  F LP +       G  P  + +C N        F
Sbjct: 1   MACKTILRSVFVSESRR--TSGARRCFFLPPSPASVPVHGLFPAPKSLCFN-------GF 51

Query: 56  HSA--RRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTV 113
            S   R   LNCSHN       D SDQGPPQEAVLKAISEVSKT+GRVG+TTN++IGGTV
Sbjct: 52  ASVPERATRLNCSHN-------DQSDQGPPQEAVLKAISEVSKTDGRVGKTTNMIIGGTV 104

Query: 114 ADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVS 173
           ADDS  +WL LD+KVN+YPT RGFTAIG+GG+DFV AMVVAVESVI + IPE  VKQ +S
Sbjct: 105 ADDSAKDWLELDQKVNTYPTERGFTAIGTGGNDFVHAMVVAVESVIDRQIPEDCVKQTLS 164

Query: 174 SRGKYVSVNIGPVQVSS 190
           S+GKYVSVNIGP+QV S
Sbjct: 165 SKGKYVSVNIGPIQVVS 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478651|ref|NP_001154373.1| uncharacterized protein [Arabidopsis thaliana] gi|332192701|gb|AEE30822.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 137/197 (69%), Gaps = 23/197 (11%)

Query: 1   MACSTVLRCVFLTESYRPLHRHNRALFSLPLTTV-----GSTPLTRLICINYGRIRARNF 55
           MAC T+LR VF++ES R      R  F LP +       G  P  + +C N        F
Sbjct: 1   MACKTILRSVFVSESRRT--SGARRCFFLPPSPASVPVHGLFPAPKSLCFN-------GF 51

Query: 56  HSA--RRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTV 113
            S   R   LNCSHN       D SDQGPPQEAVLKAISEVSKT+GRVG+TTN++IGGTV
Sbjct: 52  ASVPERATRLNCSHN-------DQSDQGPPQEAVLKAISEVSKTDGRVGKTTNMIIGGTV 104

Query: 114 ADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVS 173
           ADDS  +WL LD+KVN+YPT RGFTAIG+GG+DFV AMVVAVESVI + IPE  VKQ +S
Sbjct: 105 ADDSAKDWLELDQKVNTYPTERGFTAIGTGGNDFVHAMVVAVESVIDRQIPEDCVKQTLS 164

Query: 174 SRGKYVSVNIGPVQVSS 190
           S+GKYVSVNIGP+QV S
Sbjct: 165 SKGKYVSVNIGPIQVVS 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737152|dbj|BAF00526.1| hypothetical protein [Arabidopsis thaliana]

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 137/197 (69%), Gaps = 23/197 (11%)

Query: 1   MACSTVLRCVFLTESYRPLHRHNRALFSLPLTTV-----GSTPLTRLICINYGRIRARNF 55
           MAC T+LR VF++ES R      R  F LP +       G  P  + +C N        F
Sbjct: 1   MACKTILRSVFVSESRR--TSGARRCFFLPPSPASVPVHGLFPAPKSLCFN-------GF 51

Query: 56  HSA--RRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTV 113
            S   R   LNCSHN       D SDQGPPQEAVLKAISEVSKT+GRVG+TTN++IGGTV
Sbjct: 52  ASVPERATRLNCSHN-------DQSDQGPPQEAVLKAISEVSKTDGRVGKTTNMIIGGTV 104

Query: 114 ADDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVS 173
           ADDS  +WL LD+KVN+YPT RGFTAIG+GG+DFV AMVVAVESVI + IPE  VKQ +S
Sbjct: 105 ADDSAKDWLELDQKVNTYPTERGFTAIGTGGNDFVHAMVVAVESVIDRQIPEVCVKQTLS 164

Query: 174 SRGKYVSVNIGPVQVSS 190
           S+GKYVSVNIGP+QV S
Sbjct: 165 SKGKYVSVNIGPIQVVS 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:505006149	254	AT1G27385 "AT1G27385" [Arabido	0.915	0.685	0.596	8.5e-49

TAIR|locus:505006149 AT1G27385 "AT1G27385" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 117/196 (59%), Positives = 138/196 (70%)

Query:     1 MACSTVLRCVFLTESYRPLHRHNRALFSLPLTTV-----GSTPLTRLICIN-YGRIRARN 54
             MAC T+LR VF++ES R      R  F LP +       G  P  + +C N +  +  R 
Sbjct:     1 MACKTILRSVFVSESRRTSGA--RRCFFLPPSPASVPVHGLFPAPKSLCFNGFASVPER- 57

Query:    55 FHSARRIHLNCSHNESQSPSADDSDQGPPQEAVLKAISEVSKTEGRVGQTTNVVIGGTVA 114
                A R  LNCSHN       D SDQGPPQEAVLKAIS VSKT+GRVG+TTN++IGGTVA
Sbjct:    58 ---ATR--LNCSHN-------DQSDQGPPQEAVLKAIS-VSKTDGRVGKTTNMIIGGTVA 104

Query:   115 DDSTNEWLALDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSS 174
             DDS  +WL LD+KVN+YPT RGFTAIG+GG+DFV AMVVAVESVI + IPE  VKQ +SS
Sbjct:   105 DDSAKDWLELDQKVNTYPTERGFTAIGTGGNDFVHAMVVAVESVIDRQIPEDCVKQTLSS 164

Query:   175 RGKYVSVNIGPVQVSS 190
             +GKYVSVNIGP+QV S
Sbjct:   165 KGKYVSVNIGPIQVVS 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      190       190   0.00091  110 3  11 22  0.47    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.16u 0.23s 19.39t   Elapsed:  00:00:01
  Total cpu time:  19.16u 0.23s 19.39t   Elapsed:  00:00:01
  Start:  Mon May 20 23:11:16 2013   End:  Mon May 20 23:11:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
pfam04359	85	pfam04359, DUF493, Protein of unknown function (DU	5e-11
COG2921	90	COG2921, COG2921, Uncharacterized conserved protei	9e-05

>gnl|CDD|218043 pfam04359, DUF493, Protein of unknown function (DUF493)

 Score = 56.0 bits (136), Expect = 5e-11
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 131 YPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS 190
           +P    F  IG  G+DFV A+V  V+        +  +  K SS+GKYVSV +  V  +S
Sbjct: 7   FPCDYPFKVIGPAGEDFVDAVVEVVQRHAPD-FDDATITVKPSSKGKYVSVTV-TVTATS 64

This domain is likely to act in a regulatory capacity like pfam01842 domains. This domain has a remarkable property in that the C-terminal residue of every protein in the family lies up in the alignment. This suggests that the C-terminal residue plays some important functional role (Bateman A pers obs). Length = 85

>gnl|CDD|225473 COG2921, COG2921, Uncharacterized conserved protein [Function unknown]

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 131 YPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPE---GRVKQKVSSRGKYVSVNI 183
           +P    +  +G+ G +    +V     V+Q+  P     RV  K SS+G Y+SV+I
Sbjct: 12  FPCTFTYKVMGAAGPELEDQVVE----VVQRHAPGDYTPRVSWKPSSKGNYLSVSI 63

Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PRK00907	92	hypothetical protein; Provisional	99.91
PRK02047	91	hypothetical protein; Provisional	99.87
COG2921	90	Uncharacterized conserved protein [Function unknow	99.86
PRK00341	91	hypothetical protein; Provisional	99.85
PRK04998	88	hypothetical protein; Provisional	99.84
PF04359	85	DUF493: Protein of unknown function (DUF493); Inte	99.82

>PRK00907 hypothetical protein; Provisional

Probab=99.91  E-value=8.7e-25  Score=165.21  Aligned_cols=64  Identities=23%  Similarity=0.306  Sum_probs=60.5

Q ss_pred             hcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005          125 DRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS  190 (190)
Q Consensus       125 dEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s  190 (190)
                      ++.+|||||+|||||||.++++|.++|++||++|+|+ ++++.+++|+||+|||+|||+ .|+|.|
T Consensus         8 ~~~liEFPc~fpiKVmG~a~~~l~~~V~~vv~~h~p~-~~~~~i~~r~Ss~GkY~Svtv-~i~ats   71 (92)
T PRK00907          8 PDHGFQFPGTFELSAMGTAERGLETELPRLLAATGVE-LLQERISWKHSSSGKYVSVRI-GFRAES   71 (92)
T ss_pred             CCccEecCCCCeEEEEEcCchhHHHHHHHHHHHhCCC-CCcCcEEeccCCCCEEEEEEE-EEEECC
Confidence            4679999999999999999999999999999999999 889999999999999999999 588765

>PRK02047 hypothetical protein; Provisional

Probab=99.87  E-value=3.8e-22  Score=149.27  Aligned_cols=64  Identities=19%  Similarity=0.359  Sum_probs=60.6

Q ss_pred             hcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005          125 DRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS  190 (190)
Q Consensus       125 dEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s  190 (190)
                      ++.+|||||+|||||||.++++|.++|.+++++|+++ ++.+.++.|+||+|||+|||| .|+|.|
T Consensus         7 ~~~liefPc~~~~KvIG~~~~~~~~~v~~iv~~~~~~-~~~~~i~~k~Ss~GkY~Svtv-~v~v~s   70 (91)
T PRK02047          7 KESLIEYPSDFPIKVMGKAHPEFADTIFKVVSVHDPE-FDLEKIEERPSSGGNYTGLTI-TVRATS   70 (91)
T ss_pred             CcccccCCCCCeEEEEEeCcHhHHHHHHHHHHHhCCC-CccCceEEccCCCCeEEEEEE-EEEECC
Confidence            4689999999999999999999999999999999998 888999999999999999999 888865

>COG2921 Uncharacterized conserved protein [Function unknown]

Probab=99.86  E-value=3.4e-22  Score=152.00  Aligned_cols=62  Identities=24%  Similarity=0.428  Sum_probs=57.1

Q ss_pred             cccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEec
Q 047005          126 RKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVS  189 (190)
Q Consensus       126 EsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~  189 (190)
                      .+||||||.|||||||.++++|.++|+++||+|+|+ ....+|++|+||||||+||+| .|++.
T Consensus         7 ~~l~eFPc~F~~KVmG~a~~~l~~~vv~vvqr~ap~-~~~~~~~~k~SSkGnY~svsI-~i~A~   68 (90)
T COG2921           7 KELLEFPCTFTYKVMGAAGPELEDQVVEVVQRHAPG-DYTPRVSWKPSSKGNYLSVSI-TIRAT   68 (90)
T ss_pred             chheECCccceeeehcccchhHHHHHHHHHHHHCCc-ccCceeeeccCCCCceEEEEE-EEEEC
Confidence            389999999999999999999999999999999998 667899999999999999999 56543

>PRK00341 hypothetical protein; Provisional

Probab=99.85  E-value=2.1e-21  Score=145.61  Aligned_cols=63  Identities=17%  Similarity=0.329  Sum_probs=58.3

Q ss_pred             hcccccCCC-ccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005          125 DRKVNSYPT-VRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS  190 (190)
Q Consensus       125 dEsLiEFPC-dFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s  190 (190)
                      ++.+||||| +|||||||.++++|.++|.+||++|+ + ++.+.+++|+||+|||+|+|| .|.|.|
T Consensus         7 ~~~~ieFPc~~~~~KViG~~~~~~~~~V~~iv~~~~-~-~~~~~~~~k~Ss~GkY~S~tv-~i~~~s   70 (91)
T PRK00341          7 KSPKIEFPCEDYPIKVIGDTGVGFKDLVIEILQKHA-D-VDLSTLAERQSSNGKYTTVQL-HIVATD   70 (91)
T ss_pred             CCcccCCCCCCccEEEEEcCchhHHHHHHHHHHHhC-C-CcccceeeccCCCCEEEEEEE-EEEECC
Confidence            568999999 79999999999999999999999998 5 678899999999999999999 777765

>PRK04998 hypothetical protein; Provisional

Probab=99.84  E-value=3.9e-21  Score=142.24  Aligned_cols=62  Identities=23%  Similarity=0.312  Sum_probs=56.6

Q ss_pred             hcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005          125 DRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS  190 (190)
Q Consensus       125 dEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s  190 (190)
                      ++.+|||||+|||||||.++++|.++|.+++++|+|+ .  +.++.|+||+|||+|||| .|+|.|
T Consensus         6 ~~~~iefPc~~~~Kvig~~~~~~~~~v~~v~~~~~~~-~--~~~~~r~S~~GkY~Svtv-~v~v~s   67 (88)
T PRK04998          6 LKELLEFPCSFTYKVMGLARPELVDQVVEVVQRHAPG-D--YTPTVKPSSKGNYHSVSI-TITATS   67 (88)
T ss_pred             ccccccCCCCceEEEEEeCcHhHHHHHHHHHHHhCCC-C--CCceEccCCCCEEEEEEE-EEEECC
Confidence            5789999999999999999999999999999999988 3  358999999999999999 588865

>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function

Probab=99.82  E-value=4.2e-21  Score=139.64  Aligned_cols=63  Identities=37%  Similarity=0.550  Sum_probs=55.6

Q ss_pred             cccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005          126 RKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS  190 (190)
Q Consensus       126 EsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s  190 (190)
                      |.++||||+|+|||||.++++|.++|.+++++|+|+ +++..++.|+||+|||+|||+ .++|.|
T Consensus         2 e~~~efP~~y~~KvIg~~~~~~~~~v~~iv~~~~~~-~~~~~~~~k~S~~GkY~Svtv-~v~v~s   64 (85)
T PF04359_consen    2 EPLIEFPCDYPFKVIGKAEEDFVEAVKEIVEKHAPE-FDDEKVSSKPSSKGKYVSVTV-SVTVES   64 (85)
T ss_dssp             S-SS-SSCEEEEEEEEC-STTHHHHHCCCCCCHSS---SSEEEEECCSTTSSEEEEEE-EEEESS
T ss_pred             CccccCCCcceEEEEEECcHhHHHHHHHHHHHhCCc-CccCceEEecCCCCeEEEEEE-EEEECC
Confidence            678999999999999999999999999999999988 788999999999999999999 888875

; PDB: 1RWU_A 2JOQ_A 2H9Z_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
1rwu_A	109	Hypothetical UPF0250 protein YBED; mixed alpha-bet	6e-07

>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1 Length = 109

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 131 YPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIP-EGRVKQKVSSRGKYVSVNI 183
           +PT   +  +G    + V  +V     V+Q+  P +     K SS+G Y SV+I
Sbjct: 33  FPTPFTYKVMGQALPELVDQVV----EVVQRHAPGDYTPTVKPSSKGNYHSVSI 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
1rwu_A	109	Hypothetical UPF0250 protein YBED; mixed alpha-bet	99.82
2h9z_A	86	Hypothetical protein HP0495; feredoxin-like (beta-	99.76

>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1

Probab=99.82  E-value=1.5e-20  Score=144.42  Aligned_cols=62  Identities=23%  Similarity=0.331  Sum_probs=55.3

Q ss_pred             hcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005          125 DRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS  190 (190)
Q Consensus       125 dEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s  190 (190)
                      .+.+|||||+|||||||.++++|+++|+++|++|+|+.++   +++|+||+|||+|||| .|+|.|
T Consensus        27 l~~lieFPc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~---~~~r~Ss~GkY~Svtv-~v~v~S   88 (109)
T 1rwu_A           27 LNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT---PTVKPSSKGNYHSVSI-TINATH   88 (109)
T ss_dssp             SSCSSCCCCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCC---EEEEESSCSSEEEEEE-EECCSS
T ss_pred             chhhccCCCCceEEEEEECcHHHHHHHHHHHHHhCCCCCC---ceecCCCCCeEEEEEE-EEEECC
Confidence            3569999999999999999999999999999999994254   4889999999999999 488765

>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A

Probab=99.76  E-value=7.2e-20  Score=134.36  Aligned_cols=60  Identities=18%  Similarity=0.328  Sum_probs=52.9

Q ss_pred             hhcccccCCCccceeEeeCCCCc-HHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005          124 LDRKVNSYPTVRGFTAIGSGGDD-FVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS  190 (190)
Q Consensus       124 LdEsLiEFPCdFPIKVMG~a~dd-Fv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s  190 (190)
                      +++.++||||+|||||||.++++ |.++|++++++|+ + ++    ..|+||+|||+|||| .|+|.|
T Consensus         5 ~~~~~iefPc~~~~Kvig~~~~~~~~~~V~~v~~~~~-~-~~----~~r~Ss~GkY~Svtv-~i~a~s   65 (86)
T 2h9z_A            5 SKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPF-K-LE----FKNTSKNAKFYSFNV-SMEVSN   65 (86)
T ss_dssp             SCCCCCCCCSEEEEEEEECCSCTHHHHHHSTTCCSSE-E-CC----BSCSSCCSSCEEEEE-EEECCS
T ss_pred             CCcccccCCCCceEEEEEECCcHHHHHHHHHHHhccC-C-Cc----ccccCCCCeEEEEEE-EEEECC
Confidence            46789999999999999999999 9999999999888 3 33    269999999999999 777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1rwua_	87	d.58.54.1 (A:) Hypothetical protein ybeD {Escheric	2e-07
d2joqa1	86	d.58.54.2 (A:4-89) Hypothetical protein HP0495 {He	3e-05

>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]} Length = 87

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: YbeD-like
domain: Hypothetical protein ybeD
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 131 YPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEG-RVKQKVSSRGKYVSVNI 183
           +PT   +  +G    + V      V  V+Q+  P       K SS+G Y SV+I
Sbjct: 11  FPTPFTYKVMGQALPELVD----QVVEVVQRHAPGDYTPTVKPSSKGNYHSVSI 60

>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495 {Helicobacter pylori [TaxId: 210]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: HP0495-like
domain: Hypothetical protein HP0495
species: Helicobacter pylori [TaxId: 210]

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 131 YPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNI 183
           YP +  +  I +  D      ++       K        +  S   K+ S N+
Sbjct: 12  YPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEF-----KNTSKNAKFYSFNV 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1rwua_	87	Hypothetical protein ybeD {Escherichia coli [TaxId	99.84
d2joqa1	86	Hypothetical protein HP0495 {Helicobacter pylori [	99.71

>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: YbeD-like
domain: Hypothetical protein ybeD
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.8e-21  Score=140.07  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=55.2

Q ss_pred             ccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005          127 KVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS  190 (190)
Q Consensus       127 sLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s  190 (190)
                      .++||||+|||||||.++++|.++|.+++++|+|+ +  ..++.|+||+|||+|||| .++|.|
T Consensus         7 eliefPc~y~~KvIg~~~~~~~~~v~~i~~~~~~~-~--~~~~~k~Ss~GkY~Svtv-~i~~~s   66 (87)
T d1rwua_           7 ELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPG-D--YTPTVKPSSKGNYHSVSI-TINATH   66 (87)
T ss_dssp             CSSCCCCCEEEEEEEECCTTHHHHHHHHHHHHSSS-C--CCEEEEESSCSSEEEEEE-EECCSS
T ss_pred             hhccCCCCcEEEEEEECChhHHHHHHHHHHHhCCC-C--CcceeecCCCCcEEEEEE-EEEECC
Confidence            38999999999999999999999999999999998 3  469999999999999999 777764

>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: HP0495-like
domain: Hypothetical protein HP0495
species: Helicobacter pylori [TaxId: 210]

Probab=99.71  E-value=1.4e-18  Score=124.39  Aligned_cols=61  Identities=18%  Similarity=0.231  Sum_probs=53.3

Q ss_pred             hhcccccCCCccceeEeeCCCCcHHHHHHHHHHHhcCCCCCCCCeEEeeCCCCcEEEEEEEEEEecC
Q 047005          124 LDRKVNSYPTVRGFTAIGSGGDDFVQAMVVAVESVIQKPIPEGRVKQKVSSRGKYVSVNIGPVQVSS  190 (190)
Q Consensus       124 LdEsLiEFPCdFPIKVMG~a~ddFv~~VveIVerHapd~fd~~~Vt~RpSSkGKYvSVTVgpv~V~s  190 (190)
                      .++.+|||||+|||||||.+++++.+.++.++..|.++ ++    ..|+||+|||+|||| .++|.|
T Consensus         5 ~~~~~iefPc~y~~KvIg~~~~~~~~~~~~~~~~~~~~-~~----~~k~Ss~GkY~Svtv-~v~v~s   65 (86)
T d2joqa1           5 SKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFK-LE----FKNTSKNAKFYSFNV-SMEVSN   65 (86)
T ss_dssp             TCCCCCCSSEEEEEEEEESCSCCCHHHHHHHTTTCCEE-EE----EEEECTTSCCEEEEE-EEEESS
T ss_pred             cCCCceecCcccEEEEEEecCcccceeeEEEEeccCCC-CC----ccccCCCCcEEEEEE-EEEECC
Confidence            45678999999999999999999999999999888665 32    459999999999999 888765