Citrus Sinensis ID: 047010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccEEEcHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHcccc
Coil and Loop (DISEMBL)
cycnkndfFEARKVIDYMfdngyhpnvtTYTILEAYEMLMNVkndglkpdvyTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHnvidighiprtitFNNVIQALCGVGKIDKALLLLFLMYEhgkipsrtLYDTLIKKLDQQP
Flexible Loop (DISEMBL)
CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP
Low Complexity Region (SEG)
CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP
Disordered region (IsUnstruct)
*YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK******
Disordered Region (DISOPRED)
CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP
Disordered Region (DISEMBL)
CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP
Disordered Region (DISPRO)
CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
Q9LUR2	507	Putative pentatricopeptid	yes	no	0.947	0.285	0.300	7e-17
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.993	0.203	0.294	2e-16
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.947	0.242	0.304	3e-16
Q9T0D6	566	Pentatricopeptide repeat-	no	no	0.941	0.254	0.319	4e-16
Q3ECK2	548	Pentatricopeptide repeat-	no	no	0.947	0.264	0.254	9e-15
Q9SZ52	1112	Pentatricopeptide repeat-	no	no	0.960	0.132	0.302	1e-14
Q940A6	838	Pentatricopeptide repeat-	no	no	0.843	0.153	0.310	1e-14
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.967	0.239	0.272	1e-14
Q9M9X9	987	Pentatricopeptide repeat-	no	no	0.928	0.143	0.288	2e-14
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.895	0.187	0.337	2e-14

>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 28/173 (16%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
           YC+ N   +A  + D +   G+ PNV TYT L            A E+   +  +G +P+
Sbjct: 163 YCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPN 222

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----------------HLHN 94
           V TY A++ G C++GR  +   LL + ++R + PNV+T                   L+N
Sbjct: 223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYN 282

Query: 95  V-IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
           V I +   P   T+ ++I  LC  G +D+A  + +LM  +G  P+  +Y TLI
Sbjct: 283 VMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLI 335

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 28/180 (15%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
           +  K    EA +V+  M DNG+ P+V TY  L           +A  +L ++K  GL PD
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
           V +Y+ V+ GFC+    +E + +  E +E+G+ P+ +T   L                  
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509

Query: 94  NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP 153
            ++ +G  P   T+  +I A C  G ++KAL L   M E G +P    Y  LI  L++Q 
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 42/187 (22%)

Query: 3   CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
           C+     +A +V+D M     +P+V TYTIL            A ++L  +++ G  PDV
Sbjct: 215 CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDV 274

Query: 52  YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI--------------- 96
            TY  +++G CK GR +E ++ LN+    G  PNV+T    HN+I               
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT----HNIILRSMCSTGRWMDAEK 330

Query: 97  ---DI---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI---- 146
              D+   G  P  +TFN +I  LC  G + +A+ +L  M +HG  P+   Y+ L+    
Sbjct: 331 LLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFC 390

Query: 147 --KKLDQ 151
             KK+D+
Sbjct: 391 KEKKMDR 397

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 28/172 (16%)

Query: 3   CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
           C K +  +A+ +   M   G   N  TYT+L           + +EM   ++ DG+ P++
Sbjct: 209 CKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNL 268

Query: 52  YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT-------------LIHLHNVIDI 98
           YTY  VM+  CK GR+ +  ++ +E  ERGV+ N+VT             L   + V+D 
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ 328

Query: 99  ----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
               G  P  IT+N +I   CGVGK+ KAL L   +   G  PS   Y+ L+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILV 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 28/173 (16%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
           +C +N   +A  ++D M + GY P++  Y  +           +A++    ++  G++P+
Sbjct: 165 FCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
           V TYTA+++G C   R ++   LL++ I++ +TPNV+T   L                  
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 284

Query: 94  NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
            ++ +   P  +T++++I  LC   +ID+A  +  LM   G +     Y+TLI
Sbjct: 285 EMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLI 337

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 28/175 (16%)

Query: 3   CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
           C   +F EA   +D M D G  PN+ TY  L           +A E+  N+++ G+KP  
Sbjct: 374 CKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433

Query: 52  YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV----TLIHL-------------HN 94
           YTY   +D + K G S   +E   +   +G+ PN+V    +L  L             + 
Sbjct: 434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYG 493

Query: 95  VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
           + DIG +P ++T+N +++    VG+ID+A+ LL  M E+G  P   + ++LI  L
Sbjct: 494 LKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTL 548

Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 29/158 (18%)

Query: 3   CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
           C K    EA   +D M   G  P+  TY+IL           EA +   + K +G+ PDV
Sbjct: 564 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDV 623

Query: 52  YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI 111
           YTY+ ++DG CK  R+ E  E  +E + + V PN                  T+ +N++I
Sbjct: 624 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPN------------------TVVYNHLI 665

Query: 112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
           +A C  G++  AL L   M   G  P+   Y +LIK +
Sbjct: 666 RAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 703

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 28/176 (15%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
           +C +N   EA ++ D M   G  P++ TY+IL           +   +   + + GL P+
Sbjct: 360 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDIGHIPRTI---- 105
             TY  ++ GFC+ G+ N   EL  E + RGV P+VVT  I L  + D G + + +    
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE 479

Query: 106 ------------TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
                        +N +I  +C   K+D A  L   + + G  P    Y+ +I  L
Sbjct: 480 KMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 28/170 (16%)

Query: 1   CYCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKP 49
           C C+   + +A  VI  M   G+ P+ +TY+           +  A+ +   +K  GL  
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516

Query: 50  DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIH--------------L 92
           DVYTYT ++D FCK G   +  +  NE  E G TPNVVT   LIH               
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 93  HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLY 142
             ++  G +P  +T++ +I   C  G+++KA  +   M     +P   +Y
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 29/166 (17%)

Query: 10  EARKVIDYMFDN-GYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAV 57
           +A+ V+  M  + G  P+V TY  L            A E+L +++N G KP+VY+YT +
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430

Query: 58  MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-------HNVIDI----------GH 100
           +DGFCK+G+ +E   +LNE    G+ PN V    L       H + +           G 
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490

Query: 101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
            P   TFN++I  LC V +I  AL LL  M   G + +   Y+TLI
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
224140601	535	predicted protein [Populus trichocarpa]	0.856	0.244	0.333	7e-21
255575578	271	pentatricopeptide repeat-containing prot	0.562	0.317	0.378	4e-18
297830278	504	hypothetical protein ARALYDRAFT_479138 [	0.947	0.287	0.289	2e-16
449463386	830	PREDICTED: pentatricopeptide repeat-cont	0.954	0.175	0.304	4e-16
449508067	830	PREDICTED: pentatricopeptide repeat-cont	0.954	0.175	0.304	4e-16
302808965	609	hypothetical protein SELMODRAFT_182249 [	0.967	0.243	0.316	4e-16
302806475	471	hypothetical protein SELMODRAFT_20977 [S	0.967	0.314	0.316	6e-16
297741319	851	unnamed protein product [Vitis vinifera]	0.967	0.173	0.312	8e-16
302780485	1116	hypothetical protein SELMODRAFT_96794 [S	0.843	0.115	0.347	2e-15
359475386	762	PREDICTED: pentatricopeptide repeat-cont	0.967	0.194	0.312	2e-15

>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa] gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 64/195 (32%)

Query: 1   CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------------- 33
           C+C K D  EA++V+D M   G++PNV T TIL                           
Sbjct: 185 CHCKKKDPGEAKRVLDQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKP 244

Query: 34  -------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
                              EA+E++ ++K   ++PD+YTYTA+MDGFCKVGRS+E MELL
Sbjct: 245 NIQTYNCLLKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELL 304

Query: 75  NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG 134
           NEA+E G+ PNVV                  TFN ++      G+  K   +L LM +  
Sbjct: 305 NEAMEMGLAPNVV------------------TFNTLLDGYAKEGRPLKGFGVLKLMKQRK 346

Query: 135 KIPSRTLYDTLIKKL 149
            +P    Y TL+  L
Sbjct: 347 CMPDYISYSTLLHGL 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 46/132 (34%)

Query: 1   CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------------- 33
           C+C +ND  EA++V+D M +NG +PNV T+T L                           
Sbjct: 131 CHCKRNDADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQP 190

Query: 34  -------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL 74
                              EAYE+L ++K   ++PD+YTYTA+MDGFCKVGRS E M+LL
Sbjct: 191 NVQTYNCLLKGLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLL 250

Query: 75  NEAIERGVTPNV 86
           NEAIE  +T ++
Sbjct: 251 NEAIEMELTDDI 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp. lyrata] gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 28/173 (16%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
           +C+ N   +A  + D +   G+ PNV TYT L            A E+   + ++G++P+
Sbjct: 162 FCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPN 221

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHI-------- 101
           V TY +++ G C++GR ++   LL + ++RG+ PNV+T   L +  + +G I        
Sbjct: 222 VVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYK 281

Query: 102 --------PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI 146
                   P   T+  +I  LC  G++D+A  + +LM  +G  P+   Y TLI
Sbjct: 282 VMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLI 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Cucumis sativus]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 28/174 (16%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
           +C  ++   A  + D M  +G  PN  TY+ L           EA +ML  +   G++P 
Sbjct: 247 HCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPT 306

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
           VYTYT  +   C  G S+E +ELL +  +RG  PN+ T   L                 H
Sbjct: 307 VYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYH 366

Query: 94  NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
            ++  G +P T+T+N +I  LC  G+ + A  +   M  HG +PS   Y+ +IK
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIK 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Cucumis sativus]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 28/174 (16%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
           +C  ++   A  + D M  +G  PN  TY+ L           EA +ML  +   G++P 
Sbjct: 247 HCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPT 306

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHL-----------------H 93
           VYTYT  +   C  G S+E +ELL +  +RG  PN+ T   L                 H
Sbjct: 307 VYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYH 366

Query: 94  NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
            ++  G +P T+T+N +I  LC  G+ + A  +   M  HG +PS   Y+ +IK
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIK 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii] gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 29/177 (16%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
           +C + +  +ARK++  M   G  PNV TY+            LEA E+L  +K  G+ PD
Sbjct: 259 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPD 318

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
            +TY+A++ G CK  +  E  ++L      G TP+VV   ++IH              L 
Sbjct: 319 AFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 378

Query: 94  NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
            +      P  +T+N VI  LC +GKI +A ++L  M E G + P    Y T+I  L
Sbjct: 379 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGL 435

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii] gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 29/177 (16%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-----------ILEAYEMLMNVKNDGLKPD 50
           +C + +  +ARK++  M   G  PNV TY+            LEA E+L  +K  G+ PD
Sbjct: 137 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPD 196

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIH--------------LH 93
            +TY+A++ G CK  +  E  ++L      G TP+VV   ++IH              L 
Sbjct: 197 AFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 256

Query: 94  NVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI-PSRTLYDTLIKKL 149
            +      P  +T+N VI  LC +GKI +A ++L  M E G + P    Y T+I  L
Sbjct: 257 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGL 313

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 28/176 (15%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
           YC + +F +A  +   M  NG  P+V TYT L            A E    ++  GL+P+
Sbjct: 125 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 184

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNV------------ 95
             TYT ++DGF + G  NE   +LNE  E G +P+VVT    IH H V            
Sbjct: 185 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ 244

Query: 96  --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
             ++ G  P  ++++ +I   C  G++D+A  +   M E G  P    Y +LI+ L
Sbjct: 245 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii] gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 77/161 (47%), Gaps = 32/161 (19%)

Query: 1   CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP 49
           C C + D  EA  V D M   GY PNV TY  L            A+ M+ ++ + G+ P
Sbjct: 371 CKCGQID--EACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTP 428

Query: 50  DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN 109
           DV TY+ ++D FCK  R +E +ELL+    RG TPNVV                  TFN+
Sbjct: 429 DVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV------------------TFNS 470

Query: 110 VIQALCGVGKIDKALLLLFLM-YEHGKIPSRTLYDTLIKKL 149
           +I  LC   +  +A  +   M  +HG +P +  Y TLI  L
Sbjct: 471 IIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGL 511

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Vitis vinifera]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 28/176 (15%)

Query: 2   YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
           YC + +F +A  +   M  NG  P+V TYT L            A E    ++  GL+P+
Sbjct: 329 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 388

Query: 51  VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT---LIHLHNV------------ 95
             TYT ++DGF + G  NE   +LNE  E G +P+VVT    IH H V            
Sbjct: 389 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQ 448

Query: 96  --IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
             ++ G  P  ++++ +I   C  G++D+A  +   M E G  P    Y +LI+ L
Sbjct: 449 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.588	0.150	0.342	1.6e-16
TAIR|locus:2026172	485	NG1 "novel gene 1" [Arabidopsi	0.960	0.303	0.225	7e-08
TAIR|locus:2116772	1112	PGR3 "AT4G31850" [Arabidopsis	0.575	0.079	0.333	2.6e-14
TAIR|locus:2016427	904	AT1G19290 [Arabidopsis thalian	0.686	0.116	0.280	2.6e-14
TAIR|locus:2161408	472	AT5G46100 "AT5G46100" [Arabido	0.562	0.182	0.381	2.9e-14
TAIR|locus:2089388	507	AT3G16710 [Arabidopsis thalian	0.718	0.216	0.295	3.9e-14
TAIR|locus:2024367	607	AT1G09680 "AT1G09680" [Arabido	0.607	0.153	0.271	4.1e-14
TAIR|locus:2084978	602	AT3G04760 [Arabidopsis thalian	0.549	0.139	0.336	1.7e-12
TAIR|locus:2173403	730	AT5G64320 "AT5G64320" [Arabido	0.509	0.106	0.388	1.2e-13
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.516	0.096	0.377	1.3e-13

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 36/105 (34%), Positives = 56/105 (53%)

Query:     3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
             C+     +A +V+D M     +P+V TYTIL            A ++L  +++ G  PDV
Sbjct:   215 CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDV 274

Query:    52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI 96
              TY  +++G CK GR +E ++ LN+    G  PNV+T    HN+I
Sbjct:   275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT----HNII 315

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 36/160 (22%), Positives = 75/160 (46%)

Query:     2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILE----------AYEMLMNVKNDGLKPD 50
             +C  N  F+A  ++  M + G+ P+V  Y TI++          A E+   ++ DG++ D
Sbjct:   149 FCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRAD 208

Query:    51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHIPRTITFNN 109
               TY +++ G C  GR ++   L+ + + R + PNV+T   + +V +  G     +    
Sbjct:   209 AVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYE 268

Query:   110 VIQALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKK 148
              +   C    +     L+  +  HG++  ++ + D ++ K
Sbjct:   269 EMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTK 308

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009845 "seed germination" evidence=IMP

TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
 Identities = 33/99 (33%), Positives = 50/99 (50%)

Query:     1 CYCNKNDFFEARKVIDYMFDNGYHPNV--------TTYT---ILEAYEMLMNVKNDGLKP 49
             CY    +  EA K++  M +NG  P+V        T Y    + EA++M M +K   LKP
Sbjct:   512 CYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571

Query:    50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
              V TY  ++ G  K G+  E +EL    +++G  PN +T
Sbjct:   572 TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTIT 610

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
 Identities = 34/121 (28%), Positives = 62/121 (51%)

Query:     2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TILEAY---------EMLMNVKND-GLKPD 50
             YC      +A +V D M + G   N T   +++  Y         E + +  ND  LKPD
Sbjct:   341 YCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPD 400

Query:    51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV 110
              +TY  ++DG+C+ G  +E ++L ++  ++ V P V+T    +N++  G+  R   F++V
Sbjct:   401 HHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMT----YNILLKGY-SRIGAFHDV 455

Query:   111 I 111
             +
Sbjct:   456 L 456

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2161408 AT5G46100 "AT5G46100" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
 Identities = 37/97 (38%), Positives = 52/97 (53%)

Query:     3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
             C      EA+K+   M +    P V TYT L           EA   L  +K+ G++P+V
Sbjct:   203 CRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNV 262

Query:    52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
             +TY+++MDG CK GRS + MEL    + RG  PN+VT
Sbjct:   263 FTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089388 AT3G16710 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
 Identities = 36/122 (29%), Positives = 61/122 (50%)

Query:     2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
             YC+ N   +A  + D +   G+ PNV TYT L            A E+   +  +G +P+
Sbjct:   163 YCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPN 222

Query:    51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV-IDIGHIPRTITFNN 109
             V TY A++ G C++GR  +   LL + ++R + PNV+T   L +  + +G +       N
Sbjct:   223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYN 282

Query:   110 VI 111
             V+
Sbjct:   283 VM 284

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
 Identities = 29/107 (27%), Positives = 53/107 (49%)

Query:     2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD 50
             +C + +  +A+KV D +      P V ++  L           E + +   ++    +PD
Sbjct:   250 FCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPD 309

Query:    51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TLIHLHN 94
             V+TY+A+++  CK  + +    L +E  +RG+ PN V   TLIH H+
Sbjct:   310 VFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHS 356

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 32/95 (33%), Positives = 47/95 (49%)

Query:     4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVY 52
             N+  + E  K++  MF     PNV TY+IL           EA  +L  +K  GL PD Y
Sbjct:   310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369

Query:    53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
             +Y  ++  FC+ GR +  +E L   I  G  P++V
Sbjct:   370 SYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIV 404

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 35/90 (38%), Positives = 53/90 (58%)

Query:    10 EARKVI-DYMFDNGYHPNVTTYTIL------E-----AYEMLMNVKNDGLKPDVYTYTAV 57
             +A+ V+ D +   G  P+V TY  L      E     A E+L +++N G KP+VY+YT +
Sbjct:   371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430

Query:    58 MDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
             +DGFCK+G+ +E   +LNE    G+ PN V
Sbjct:   431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTV 460

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:    10 EARKVIDYMFDNGYHPNVTTY-TILEAYE---ML---MNVKND----GLKPDVYTYTAVM 58
             EA KV++ M  NG+ P++ TY +++ AY    ML   M +KN     G KPDV+TYT ++
Sbjct:   332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLL 391

Query:    59 DGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
              GF + G+    M +  E    G  PN+ T
Sbjct:   392 SGFERAGKVESAMSIFEEMRNAGCKPNICT 421

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-08
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	9e-06
pfam01535	31	pfam01535, PPR, PPR repeat	4e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.5 bits (135), Expect = 2e-11
 Identities = 20/40 (50%), Positives = 28/40 (70%)

Query: 49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
          PDV TY  ++DG+CK G+  E ++L NE  +RG+ PNV T
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.6 bits (112), Expect = 4e-08
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 11/50 (22%)

Query: 25 PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 63
          P+V TY  L           EA ++   +K  G+KP+VYTY+ ++DG CK
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 46.2 bits (111), Expect = 5e-08
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE 76
           GLKPDV TY  ++DG C+ GR +E +ELL+E
Sbjct: 1  KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.4 bits (101), Expect = 1e-06
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV 86
           TY  ++DG CK GR  E +EL  E  ERG+ P+V
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.2 bits (98), Expect = 4e-06
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 1  CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL 33
           YC K    EA K+ + M   G  PNV TY+IL
Sbjct: 12 GYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 10  EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVM 58
           +A +++      G      +Y+ L           +A E+  ++K+  L+P V T  A++
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726

Query: 59  DGFCKVGRSNEVMELLNEAIERGVTPNVVT 88
              C+  +  + +E+L+E    G+ PN +T
Sbjct: 727 TALCEGNQLPKALEVLSEMKRLGLCPNTIT 756

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV 82
           TY +++ G+CK G+  E +EL  E  E+GV
Sbjct: 1  VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL 149
           P  +T+N +I   C  GK+++AL L   M + G  P+   Y  LI  L
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 36/138 (26%)

Query: 25  PNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL 73
           P ++T+ +L            A  +L  V+  GLK D   YT ++    K G+ + + E+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 74  LNEAIERGVTPNVVTLIHLHNVID----IGHIPRT----------------ITFNNVIQA 113
            +E +  GV  NV T   L   ID     G + +                 + FN +I A
Sbjct: 495 FHEMVNAGVEANVHTFGAL---IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551

Query: 114 LCG-VGKIDKALLLLFLM 130
            CG  G +D+A  +L  M
Sbjct: 552 -CGQSGAVDRAFDVLAEM 568

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 29/154 (18%)

Query: 5   KNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYT 53
           K D+  A  + D M   G  P+   ++ L           +A+E+L + +  G+K    +
Sbjct: 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686

Query: 54  YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA 113
           Y+++M          + +EL  +     + P V                   T N +I A
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS------------------TMNALITA 728

Query: 114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK 147
           LC   ++ KAL +L  M   G  P+   Y  L+ 
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 11/96 (11%)

Query: 3   CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDV 51
            N  ++ +A ++ + +      P V+T   L           +A E+L  +K  GL P+ 
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754

Query: 52  YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV 87
            TY+ ++    +   ++  ++LL++A E G+ PN+V
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790

Length = 1060

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.1 bits (79), Expect = 0.002
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP 84
          + TY A++    K G  +  + +L E    G+ P
Sbjct: 1  LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PLN03218	1060	maturation of RBCL 1; Provisional	99.98
PLN03218	1060	maturation of RBCL 1; Provisional	99.98
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.96
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.96
PLN03077	857	Protein ECB2; Provisional	99.95
PLN03077	857	Protein ECB2; Provisional	99.94
PF13041	50	PPR_2: PPR repeat family	99.78
PF13041	50	PPR_2: PPR repeat family	99.72
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.62
PF12854	34	PPR_1: PPR repeat	99.4
PF12854	34	PPR_1: PPR repeat	99.38
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	99.08
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	99.07
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.06
PF13812	34	PPR_3: Pentatricopeptide repeat domain	99.03
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.0
PF13812	34	PPR_3: Pentatricopeptide repeat domain	99.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.94
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.88
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.87
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.65
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.58
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.54
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.46
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.42
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	98.33
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.32
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.28
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.26
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.05
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.05
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.01
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.93
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.92
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.91
KOG3941	406	consensus Intermediate in Toll signal transduction	97.9
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.86
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.76
PRK12370	553	invasion protein regulator; Provisional	97.7
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.57
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.53
PRK15359	144	type III secretion system chaperone protein SscB;	97.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.52
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.49
PRK12370	553	invasion protein regulator; Provisional	97.47
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.46
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	97.39
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.38
KOG1126	638	consensus DNA-binding cell division cycle control	97.35
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.33
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.29
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.29
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.28
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.22
KOG2003	840	consensus TPR repeat-containing protein [General f	97.21
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.21
KOG1126	638	consensus DNA-binding cell division cycle control	97.2
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.17
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.04
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.03
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.99
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.97
KOG1129	478	consensus TPR repeat-containing protein [General f	96.95
KOG3941	406	consensus Intermediate in Toll signal transduction	96.92
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.91
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.91
PRK14574	822	hmsH outer membrane protein; Provisional	96.9
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.88
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.88
PRK15359	144	type III secretion system chaperone protein SscB;	96.87
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.8
PRK14574	822	hmsH outer membrane protein; Provisional	96.79
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.77
KOG2003	840	consensus TPR repeat-containing protein [General f	96.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.67
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.6
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.46
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.46
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.43
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	96.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.37
PF13371	73	TPR_9: Tetratricopeptide repeat	96.28
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.26
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.21
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.19
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.17
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.16
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.16
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.14
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.12
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.03
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.01
KOG1129	478	consensus TPR repeat-containing protein [General f	95.94
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.63
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.58
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.53
KOG0553	304	consensus TPR repeat-containing protein [General f	95.5
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.47
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	95.3
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	95.29
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.28
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.2
PRK11189	296	lipoprotein NlpI; Provisional	95.15
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.14
KOG0547	606	consensus Translocase of outer mitochondrial membr	95.08
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	94.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	94.89
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	94.83
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	94.75
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	94.73
PF13371	73	TPR_9: Tetratricopeptide repeat	94.73
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.69
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.68
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.55
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.51
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.49
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.42
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.17
PRK10803	263	tol-pal system protein YbgF; Provisional	94.1
KOG2076	895	consensus RNA polymerase III transcription factor	93.99
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.98
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.8
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.76
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	93.74
PF12688	120	TPR_5: Tetratrico peptide repeat	93.69
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.61
KOG4340	459	consensus Uncharacterized conserved protein [Funct	93.54
PF13428	44	TPR_14: Tetratricopeptide repeat	93.48
PRK14720	906	transcript cleavage factor/unknown domain fusion p	93.45
KOG1128	777	consensus Uncharacterized conserved protein, conta	93.4
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	93.32
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	93.3
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	93.29
PF13762	145	MNE1: Mitochondrial splicing apparatus component	93.19
KOG2076	895	consensus RNA polymerase III transcription factor	93.16
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.15
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	93.07
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	93.05
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.84
PF12688	120	TPR_5: Tetratrico peptide repeat	92.82
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.39
KOG4340	459	consensus Uncharacterized conserved protein [Funct	92.31
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.2
PRK10564	303	maltose regulon periplasmic protein; Provisional	92.17
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	91.93
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.92
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	91.92
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.73
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	91.72
PF13428	44	TPR_14: Tetratricopeptide repeat	91.71
KOG4570	418	consensus Uncharacterized conserved protein [Funct	91.65
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	91.56
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	90.92
PRK11189	296	lipoprotein NlpI; Provisional	90.86
KOG3060	289	consensus Uncharacterized conserved protein [Funct	90.71
KOG1915	677	consensus Cell cycle control protein (crooked neck	90.54
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	90.36
KOG4570	418	consensus Uncharacterized conserved protein [Funct	90.27
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	90.1
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	90.0
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	89.39
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.36
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	89.31
smart00299	140	CLH Clathrin heavy chain repeat homology.	89.04
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.6
KOG2796	366	consensus Uncharacterized conserved protein [Funct	88.25
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	88.18
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.18
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	88.17
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	88.1
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.94
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	87.73
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.52
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	87.4
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	86.55
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	86.21
KOG0495	913	consensus HAT repeat protein [RNA processing and m	86.16
KOG1128	777	consensus Uncharacterized conserved protein, conta	86.07
PRK13342	413	recombination factor protein RarA; Reviewed	85.92
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.83
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	85.72
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	85.55
PF12926	88	MOZART2: Mitotic-spindle organizing gamma-tubulin	85.51
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.26
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.05
PRK10564	303	maltose regulon periplasmic protein; Provisional	84.75
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	84.72
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	84.46
PF13929	292	mRNA_stabil: mRNA stabilisation	84.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	84.34
PRK14720	906	transcript cleavage factor/unknown domain fusion p	84.26
KOG1125	579	consensus TPR repeat-containing protein [General f	84.24
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	83.73
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	83.19
KOG1585	308	consensus Protein required for fusion of vesicles	82.79
PF13431	34	TPR_17: Tetratricopeptide repeat	82.63
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.62
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	82.02
PRK10803	263	tol-pal system protein YbgF; Provisional	81.28
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	81.12
KOG2376	652	consensus Signal recognition particle, subunit Srp	81.06
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	80.72
PF14669	233	Asp_Glu_race_2: Putative aspartate racemase	80.07
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	80.05

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.98  E-value=5.3e-31  Score=207.19  Aligned_cols=152  Identities=24%  Similarity=0.366  Sum_probs=101.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |++.|++++|.++|+.|.+.|++|+..+|+.+           +|.++|++|.+.|+.||..||+++|++|++.|++++|
T Consensus       589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA  668 (1060)
T PLN03218        589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA  668 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence            45556666666666666666666666666555           5666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           71 MELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .++|++|.+.|+.||..+|                 .++.+|...+..||..+||++|.+|++.|++++|.++|++|.+.
T Consensus       669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~  748 (1060)
T PLN03218        669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL  748 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            6666666666666666555                 44555666677777777777777777777777777777777777


Q ss_pred             CCCCCHHHHHHHHHHhhcCC
Q 047010          134 GKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       134 ~v~p~~~~~~~li~~~~~~g  153 (153)
                      |+.||..||+++|.+|++.|
T Consensus       749 Gi~Pd~~Ty~sLL~a~~k~G  768 (1060)
T PLN03218        749 GLCPNTITYSILLVASERKD  768 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHHCC
Confidence            77777777777777777654

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.98  E-value=8e-31  Score=206.17  Aligned_cols=152  Identities=20%  Similarity=0.328  Sum_probs=90.3

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |++.|++++|..+|+.|.+.|+.||..+|+.+           .|.++|++|.+.|+.||..||++||.+|++.|++++|
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA  526 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA  526 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence            55666666666666666666666666666655           5566666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCCchHHHH-----------------HHHHHHHH--cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           71 MELLNEAIERGVTPNVVTL-----------------IHLHNVID--IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      .++|++|.+.|+.||..+|                 .++.+|..  .++.||.++|+++|.+|++.|++++|.++|+.|.
T Consensus       527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~  606 (1060)
T PLN03218        527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH  606 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            6666666666666666655                 23333433  3455555555555555555555555555555555


Q ss_pred             HCCCCCCHHHHHHHHHHhhcCC
Q 047010          132 EHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       132 ~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      +.|+.|+..+|+++|.+|++.|
T Consensus       607 e~gi~p~~~tynsLI~ay~k~G  628 (1060)
T PLN03218        607 EYNIKGTPEVYTIAVNSCSQKG  628 (1060)
T ss_pred             HcCCCCChHHHHHHHHHHHhcC
Confidence            5555555555555555555543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.96  E-value=6.6e-29  Score=191.02  Aligned_cols=148  Identities=20%  Similarity=0.292  Sum_probs=85.9

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |++.|++++|.++|+.|.+    +|..+||.+           +|+++|++|.+.|+.||..||+++|.+|++.|++++|
T Consensus       269 y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a  344 (697)
T PLN03081        269 YSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA  344 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence            4555666666666665542    455566555           5666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHcCCCchHHHHHHH-------------HHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010           71 MELLNEAIERGVTPNVVTLIHL-------------HNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP  137 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p  137 (153)
                      .+++.+|.+.|+.||..+++.+             ..+++....||+++||+||.+|++.|+.++|.++|++|.+.|+.|
T Consensus       345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P  424 (697)
T PLN03081        345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP  424 (697)
T ss_pred             HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            6666666666666665554222             223333344555666666666666666666666666665556666


Q ss_pred             CHHHHHHHHHHhhcCC
Q 047010          138 SRTLYDTLIKKLDQQP  153 (153)
Q Consensus       138 ~~~~~~~li~~~~~~g  153 (153)
                      |..||+++|.+|++.|
T Consensus       425 d~~T~~~ll~a~~~~g  440 (697)
T PLN03081        425 NHVTFLAVLSACRYSG  440 (697)
T ss_pred             CHHHHHHHHHHHhcCC
Confidence            6666666666655544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.96  E-value=4.3e-28  Score=186.54  Aligned_cols=149  Identities=22%  Similarity=0.274  Sum_probs=118.1

Q ss_pred             CccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      +|++.|++++|..+|++|.+.|++||..||+.+           .+.+++.+|.+.|+.||..+|++||++|++.|++++
T Consensus       299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~  378 (697)
T PLN03081        299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED  378 (697)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence            578999999999999999999999999999987           778888888888888888777777777777777777


Q ss_pred             HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      |.++|++|.+    ||..+|                 .++.+|.+.|+.||.+||+++|.+|++.|.+++|.++|+.|.+
T Consensus       379 A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~  454 (697)
T PLN03081        379 ARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE  454 (697)
T ss_pred             HHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            7777777754    344444                 5666677777777777777777777777777777777777754


Q ss_pred             -CCCCCCHHHHHHHHHHhhcCC
Q 047010          133 -HGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       133 -~~v~p~~~~~~~li~~~~~~g  153 (153)
                       .|+.|+..+|+.+|++|++.|
T Consensus       455 ~~g~~p~~~~y~~li~~l~r~G  476 (697)
T PLN03081        455 NHRIKPRAMHYACMIELLGREG  476 (697)
T ss_pred             hcCCCCCccchHhHHHHHHhcC
Confidence             577777777777777777765

>PLN03077 Protein ECB2; Provisional

Probab=99.95  E-value=3e-27  Score=185.32  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHH-------------HHHHHHHcCC
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI-------------HLHNVIDIGH  100 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~-------------~~~~~~~~~~  100 (153)
                      +|+++|.+|...|+.||..||+++|.+|++.|+++.|.+++..|.+.|..||..+++             ....+++...
T Consensus       271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~  350 (857)
T PLN03077        271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME  350 (857)
T ss_pred             HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence            344444444444444444444444444444444444444444444444444444442             2233444555


Q ss_pred             CCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          101 IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      .||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|
T Consensus       351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g  403 (857)
T PLN03077        351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG  403 (857)
T ss_pred             CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence            67788888888888888888888888888888888888888888888887654

>PLN03077 Protein ECB2; Provisional

Probab=99.94  E-value=1.1e-25  Score=176.58  Aligned_cols=149  Identities=19%  Similarity=0.217  Sum_probs=122.2

Q ss_pred             CccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      +|++.|++++|..+|.+|.+.|+.||..||+.+           .+.+++..|...|+.||..+||++|.+|++.|++++
T Consensus       262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~  341 (857)
T PLN03077        262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE  341 (857)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence            478899999999999999999999999999988           678888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      |.++|++|..    ||..+|                 .++.+|...|+.||..||+++|.+|++.|+++.|.+++..|.+
T Consensus       342 A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~  417 (857)
T PLN03077        342 AEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER  417 (857)
T ss_pred             HHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            8888888753    344433                 5666677778888888888888888888888888888888888


Q ss_pred             CCCCCCHHHHHHHHHHhhcCC
Q 047010          133 HGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       133 ~~v~p~~~~~~~li~~~~~~g  153 (153)
                      .|+.|+..+|++||++|++.|
T Consensus       418 ~g~~~~~~~~n~Li~~y~k~g  438 (857)
T PLN03077        418 KGLISYVVVANALIEMYSKCK  438 (857)
T ss_pred             hCCCcchHHHHHHHHHHHHcC
Confidence            888888888888888887765

>PF13041 PPR_2: PPR repeat family

Probab=99.78  E-value=7.2e-19  Score=91.40  Aligned_cols=50  Identities=34%  Similarity=0.592  Sum_probs=48.9

Q ss_pred             CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      ||+++||++|++|++.|++++|.++|++|++.|+.||..||++||++|||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            88999999999999999999999999999999999999999999999986

>PF13041 PPR_2: PPR repeat family

Probab=99.72  E-value=2.9e-17  Score=85.33  Aligned_cols=50  Identities=40%  Similarity=0.889  Sum_probs=47.2

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHc
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG  116 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  116 (153)
                      ||.++||++|.+|++.|++++|+++|++|.+.|++||..                  ||+++|++||+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~------------------Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSY------------------TYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHcC
Confidence            899999999999999999999999999999999987755                  99999999986

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=3.3e-14  Score=101.33  Aligned_cols=150  Identities=21%  Similarity=0.271  Sum_probs=122.4

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHH--------------HHHHHHHHHHHcC-------------------CCcc
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDG-------------------LKPD   50 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~a~~~~~~m~~~g-------------------~~~~   50 (153)
                      ..+.++.+..+|+.|+..|...++-.-..|              .-++-|-.|...|                   .+..
T Consensus       127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT  206 (625)
T KOG4422|consen  127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT  206 (625)
T ss_pred             hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence            357788899999999999877776544333              1122222232222                   2347


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-------------HHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-------------IHLHNVIDIGHIPRTITFNNVIQALCGV  117 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~li~~~~~~  117 (153)
                      ..||.+||.|.|+--..+.|.+++++-.......+..+|             +++.+|....+.||..|+|+++++.++.
T Consensus       207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akf  286 (625)
T KOG4422|consen  207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKF  286 (625)
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence            789999999999999999999999999988888888877             7888999999999999999999999999


Q ss_pred             CcHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          118 GKIDK----ALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       118 g~~~~----a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      |+++.    |++++.+|++-||.|+..+|..+|..++|.+
T Consensus       287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~  326 (625)
T KOG4422|consen  287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES  326 (625)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence            98875    5678889999999999999999999998864

>PF12854 PPR_1: PPR repeat

Probab=99.40  E-value=4.7e-13  Score=63.39  Aligned_cols=34  Identities=47%  Similarity=0.959  Sum_probs=32.3

Q ss_pred             cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010           45 DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI   78 (153)
Q Consensus        45 ~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~   78 (153)
                      +|+.||..|||+||.+||+.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4889999999999999999999999999999984

>PF12854 PPR_1: PPR repeat

Probab=99.38  E-value=6.9e-13  Score=62.83  Aligned_cols=34  Identities=32%  Similarity=0.598  Sum_probs=31.7

Q ss_pred             cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           98 IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        98 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      +|+.||.+|||++|++||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4778999999999999999999999999999984

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=99.08  E-value=2.6e-10  Score=54.19  Aligned_cols=34  Identities=47%  Similarity=1.021  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN   85 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~   85 (153)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            4799999999999999999999999999999997

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=99.07  E-value=3.1e-10  Score=53.91  Aligned_cols=35  Identities=37%  Similarity=0.694  Sum_probs=33.1

Q ss_pred             hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010          105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR  139 (153)
Q Consensus       105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~  139 (153)
                      ++||++|.+|++.|++++|.++|++|++.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            48999999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=8.2e-09  Score=74.33  Aligned_cols=88  Identities=17%  Similarity=0.338  Sum_probs=76.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH----H
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE----V   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~----a   70 (153)
                      .|+--..+.|..++.+-.....+.+..+||.+       ....++.+|.+....||..|+|+++++.++.|+++.    |
T Consensus       217 l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa  296 (625)
T KOG4422|consen  217 LCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA  296 (625)
T ss_pred             HHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH
Confidence            34555678899999999888889999999988       556788899999999999999999999999997755    6


Q ss_pred             HHHHHHHHHcCCCchHHHH
Q 047010           71 MELLNEAIERGVTPNVVTL   89 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~   89 (153)
                      .+++.+|++-|+.|...+|
T Consensus       297 lqil~EmKeiGVePsLsSy  315 (625)
T KOG4422|consen  297 LQILGEMKEIGVEPSLSSY  315 (625)
T ss_pred             HHHHHHHHHhCCCcchhhH
Confidence            6788899999999999988

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=99.03  E-value=5.2e-10  Score=52.88  Aligned_cols=33  Identities=36%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC
Q 047010          105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP  137 (153)
Q Consensus       105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p  137 (153)
                      ++||++|.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999988

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.00  E-value=7.7e-08  Score=69.89  Aligned_cols=46  Identities=20%  Similarity=0.081  Sum_probs=23.3

Q ss_pred             CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010          102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~  149 (153)
                      |+...+..+...+.+.|++++|..+++++.+.  .|+..++..++..+
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~  325 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH  325 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence            34344455555555555555555555554443  35555555555443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=99.00  E-value=1.1e-09  Score=51.76  Aligned_cols=33  Identities=33%  Similarity=0.648  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP   84 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~   84 (153)
                      .||+++|++|++.|+++.|+++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            689999999999999999999999999999987

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.94  E-value=1.6e-07  Score=68.25  Aligned_cols=47  Identities=6%  Similarity=0.106  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      .|...+.++.+. .+++..++..+...+.+.|++++|.++++.+.+.+
T Consensus       125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (389)
T PRK11788        125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG  171 (389)
T ss_pred             HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence            455555555443 12345556666666666666666666666665543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.88  E-value=2.7e-09  Score=49.26  Aligned_cols=31  Identities=39%  Similarity=0.907  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV   82 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~   82 (153)
                      +|||++|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4899999999999999999999999999874

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.87  E-value=4e-09  Score=48.64  Aligned_cols=31  Identities=32%  Similarity=0.626  Sum_probs=29.3

Q ss_pred             hhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010          105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus       105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v  135 (153)
                      ++||++|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4899999999999999999999999999885

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.65  E-value=8.4e-07  Score=58.85  Aligned_cols=105  Identities=19%  Similarity=0.207  Sum_probs=85.8

Q ss_pred             CCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHH
Q 047010           47 LKPDVYTYTAVMDGFCKV-----GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKID  121 (153)
Q Consensus        47 ~~~~~~t~~~ll~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  121 (153)
                      -..|..+|..+|+.|.+.     |+++-....++.|.+-|+.-|..+|+.+.+++-+|.-.....+.++.--|-  .+.+
T Consensus        43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp--~Qq~  120 (228)
T PF06239_consen   43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYP--RQQE  120 (228)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCc--HHHH
Confidence            356889999999998764     788989999999999999999998888888887666555555555555443  3567


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          122 KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       122 ~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      -|.+++++|...||.||..|+..|++.|.+.+
T Consensus       121 c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  121 CAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            89999999999999999999999999998754

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.58  E-value=1.6e-05  Score=62.90  Aligned_cols=115  Identities=9%  Similarity=0.060  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVIDI   98 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~   98 (153)
                      .+..+++.+.+.. +.+...+..+...+.+.|++++|.+.|+++...+-.++....               ..+..+.. 
T Consensus       687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-  764 (899)
T TIGR02917       687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK-  764 (899)
T ss_pred             HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence            4444444444442 234455555556666666666666666665554322211100               11122222 


Q ss_pred             CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010           99 GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus        99 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      ....+...+..+...|...|++++|...|+++.+.. .++...+..+...+.+
T Consensus       765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~  816 (899)
T TIGR02917       765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE  816 (899)
T ss_pred             hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            123456677777777777788888888887776654 3455566665555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.54  E-value=2.7e-05  Score=61.65  Aligned_cols=145  Identities=15%  Similarity=0.122  Sum_probs=94.5

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      .+.|++++|...|..+.+.+  |+..++..+           ++.+.+.++.... +.+...+..+...|.+.|++++|.
T Consensus       714 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~  790 (899)
T TIGR02917       714 LRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI  790 (899)
T ss_pred             HHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence            34566666666666666543  333222222           5566666665543 346677888888888888888888


Q ss_pred             HHHHHHHHcCCCchHHHHHH----------------HHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010           72 ELLNEAIERGVTPNVVTLIH----------------LHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus        72 ~l~~~m~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v  135 (153)
                      +.|+++.+.. +.+..++..                +...... ..-+..++..+...+.+.|++++|...|+++.+.+.
T Consensus       791 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       791 KHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            8888887654 233333311                1111211 112445677888889999999999999999988764


Q ss_pred             CCCHHHHHHHHHHhhcCC
Q 047010          136 IPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       136 ~p~~~~~~~li~~~~~~g  153 (153)
                      . +..++..+...+.+.|
T Consensus       869 ~-~~~~~~~l~~~~~~~g  885 (899)
T TIGR02917       869 E-AAAIRYHLALALLATG  885 (899)
T ss_pred             C-ChHHHHHHHHHHHHcC
Confidence            3 8889988988888765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.46  E-value=1.2e-05  Score=48.07  Aligned_cols=82  Identities=16%  Similarity=0.232  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC--------cHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG--------KIDK  122 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~  122 (153)
                      .|....|.-+...+++...-.+|+.+++.|+ .|+..                  +|+.++.+.++..        +...
T Consensus        26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~------------------~Yn~VL~Si~~R~lD~~~ie~kl~~   87 (120)
T PF08579_consen   26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVE------------------LYNKVLKSIAKRELDSEDIENKLTN   87 (120)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHH------------------HHHHHHHHHHHccccchhHHHHHHH
Confidence            3455667777777999999999999999998 56544                  8888888887654        2346


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       123 a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      .+.+++.|...+++|+..||+.++..+.+
T Consensus        88 LLtvYqDiL~~~lKP~~etYnivl~~Llk  116 (120)
T PF08579_consen   88 LLTVYQDILSNKLKPNDETYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            77889999999999999999999988764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.42  E-value=3.1e-06  Score=66.01  Aligned_cols=54  Identities=24%  Similarity=0.262  Sum_probs=42.3

Q ss_pred             HHHHHcCC-CCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047010           93 HNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI  146 (153)
Q Consensus        93 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li  146 (153)
                      ..+++... .|+..+|.+++.+-.-.|+.+.|..++.+|++.|+..+..-|..|+
T Consensus       192 l~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl  246 (1088)
T KOG4318|consen  192 LNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL  246 (1088)
T ss_pred             HHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence            33444444 4899999999999999999999999999999988766665444444

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=98.33  E-value=1.6e-05  Score=48.91  Aligned_cols=98  Identities=11%  Similarity=0.071  Sum_probs=74.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      |..++.++|.++++.|+++....+++..-  |+.++...-.-- .-......|+..+..+++.+|+..|++..|+++.+.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~-~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~   77 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD-YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF   77 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc-cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            56789999999999999999999997753  222221100000 011234579999999999999999999999999998


Q ss_pred             HH-HCCCCCCHHHHHHHHHHhh
Q 047010          130 MY-EHGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       130 m~-~~~v~p~~~~~~~li~~~~  150 (153)
                      .. ..++.....+|..|++.+.
T Consensus        78 fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   78 FSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHH
Confidence            85 4689889999999998754

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.32  E-value=6.2e-07  Score=69.72  Aligned_cols=84  Identities=15%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH------HcCCCCcHhhHHHHH
Q 047010           38 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI------DIGHIPRTITFNNVI  111 (153)
Q Consensus        38 ~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~li  111 (153)
                      ++-.+...|+.||.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.+..--      +.--.|...||+++.
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll   90 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL   90 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence            4566788899999999999999999999999999 999998888888877775554431      111257778999999


Q ss_pred             HHHHccCcHHH
Q 047010          112 QALCGVGKIDK  122 (153)
Q Consensus       112 ~~~~~~g~~~~  122 (153)
                      .+|..+||+..
T Consensus        91 ~ayr~hGDli~  101 (1088)
T KOG4318|consen   91 KAYRIHGDLIL  101 (1088)
T ss_pred             HHHHhccchHH
Confidence            99999998866

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.28  E-value=6.3e-06  Score=49.18  Aligned_cols=62  Identities=16%  Similarity=0.297  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 047010           34 EAYEMLMNVKNDGL-KPDVYTYTAVMDGFCKVG--------RSNEVMELLNEAIERGVTPNVVTLIHLHNV   95 (153)
Q Consensus        34 ~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~g--------~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~   95 (153)
                      ....+|+.+++.|+ -|+..+|+.++.+.++..        .+-+.+.+++.|...+++|+..+|+++...
T Consensus        43 ~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~  113 (120)
T PF08579_consen   43 IINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS  113 (120)
T ss_pred             HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence            44556666666666 667777777776665533        234566677777777777777777555443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.26  E-value=0.00039  Score=46.28  Aligned_cols=144  Identities=15%  Similarity=0.142  Sum_probs=94.8

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |...|++++|...++...+.. +.+...+..+           .|.+.+++..+.. +.+...+..+-..+...|++++|
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A  118 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQA  118 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence            456789999999999987753 2223333333           6777777776654 23556788888899999999999


Q ss_pred             HHHHHHHHHcCCCchH-HHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           71 MELLNEAIERGVTPNV-VTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .+.+++.......+.. ..+                 ..+...... ...+...+..+...+...|++++|...+++..+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  197 (234)
T TIGR02521       119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQYKDARAYLERYQQ  197 (234)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999998875322221 111                 122222221 122456788888899999999999999998876


Q ss_pred             CCCCCCHHHHHHHHHHh
Q 047010          133 HGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       133 ~~v~p~~~~~~~li~~~  149 (153)
                      . ...+...+..+...+
T Consensus       198 ~-~~~~~~~~~~~~~~~  213 (234)
T TIGR02521       198 T-YNQTAESLWLGIRIA  213 (234)
T ss_pred             h-CCCCHHHHHHHHHHH
Confidence            5 233445555444444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.05  E-value=0.00017  Score=50.39  Aligned_cols=144  Identities=15%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ..+++++|..+.....+..  +++..+...           .+.+++..+.+. ..+.+...|..+-..+.+.|+.++|+
T Consensus        89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  166 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL  166 (280)
T ss_dssp             -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred             ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4566777777766554432  333333222           555666665543 23467788888888999999999999


Q ss_pred             HHHHHHHHcCCCchHHH-H-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           72 ELLNEAIERGVTPNVVT-L-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        72 ~l~~~m~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      +.+++..+.  .|+... .                 ..+....... ..|...|..+..++...|+.++|+..|++..+.
T Consensus       167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL  243 (280)
T ss_dssp             HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence            999998775  343221 1                 1222222222 455667889999999999999999999998764


Q ss_pred             CCCCCHHHHHHHHHHhhcCC
Q 047010          134 GKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       134 ~v~p~~~~~~~li~~~~~~g  153 (153)
                      . +.|......+-+++.+.|
T Consensus       244 ~-p~d~~~~~~~a~~l~~~g  262 (280)
T PF13429_consen  244 N-PDDPLWLLAYADALEQAG  262 (280)
T ss_dssp             S-TT-HHHHHHHHHHHT---
T ss_pred             c-cccccccccccccccccc
Confidence            3 236666667766666554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.05  E-value=8.9e-05  Score=54.60  Aligned_cols=106  Identities=12%  Similarity=0.105  Sum_probs=71.4

Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CchHHHH--------------HHHHHHHHcCCCCcHhh
Q 047010           46 GLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG----V-TPNVVTL--------------IHLHNVIDIGHIPRTIT  106 (153)
Q Consensus        46 g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~----~-~~~~~~~--------------~~~~~~~~~~~~~~~~~  106 (153)
                      +.+.+......+++.+....+++.+.+++.+.+...    + +.+..++              .++..-...|+-||.++
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            334455566666666666666666666666555431    1 1111111              22233334566677889


Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          107 FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       107 ~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      +|.+|+.+.+.|++..|.++...|...+.-.+..|+..-+.+|.+
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            999999999999999999999999888777888888888777754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.01  E-value=4e-05  Score=51.05  Aligned_cols=63  Identities=19%  Similarity=0.283  Sum_probs=37.4

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHH---------------------------HHHHHHHHHHHcCCCccHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------EAYEMLMNVKNDGLKPDVYTYTA   56 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------------------~a~~~~~~m~~~g~~~~~~t~~~   56 (153)
                      +.|+++=....+..|.+-|+.-|..+|+.|                           -+.+++++|...|+-||..|+..
T Consensus        64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~  143 (228)
T PF06239_consen   64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQM  143 (228)
T ss_pred             CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            345555555555666666666666666655                           45566666666666666666666


Q ss_pred             HHHHHHhcCC
Q 047010           57 VMDGFCKVGR   66 (153)
Q Consensus        57 ll~~~~~~g~   66 (153)
                      +++.+++.+.
T Consensus       144 ll~iFG~~s~  153 (228)
T PF06239_consen  144 LLNIFGRKSH  153 (228)
T ss_pred             HHHHhccccH
Confidence            6666666554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.93  E-value=0.0019  Score=47.57  Aligned_cols=147  Identities=13%  Similarity=0.097  Sum_probs=99.1

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHc---CCCccHHHHHHHHHHHHh
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKND---GLKPDVYTYTAVMDGFCK   63 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~---g~~~~~~t~~~ll~~~~~   63 (153)
                      |.+.|++++|..++..+.+.+..+ ......+               ...+.+.+..+.   ..+.+......+...+.+
T Consensus       197 ~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~  275 (398)
T PRK10747        197 YIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE  275 (398)
T ss_pred             HHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence            456789999999999999876442 2222211               001111111111   123477788899999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHH------------HHHHHHH--HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           64 VGRSNEVMELLNEAIERGVTPNVVTL------------IHLHNVI--DIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        64 ~g~~~~a~~l~~~m~~~~~~~~~~~~------------~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      .|+.++|.+++++..+.  +|+....            ..+..+.  .+...-|....-++-..+.+.+++++|...|+.
T Consensus       276 ~g~~~~A~~~L~~~l~~--~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        276 CDDHDTAQQIILDGLKR--QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             CCCHHHHHHHHHHHHhc--CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999998874  4444422            1222221  122334556788889999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          130 MYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      ..+.  .|+..++..+-..+.+.|
T Consensus       354 al~~--~P~~~~~~~La~~~~~~g  375 (398)
T PRK10747        354 ALKQ--RPDAYDYAWLADALDRLH  375 (398)
T ss_pred             HHhc--CCCHHHHHHHHHHHHHcC
Confidence            8874  599999888888777654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.92  E-value=6.4e-05  Score=52.53  Aligned_cols=147  Identities=18%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhc-hHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      +.+.|++++|..++..-.....+|+...| ..+           .+...++++...+.. +...+..++.. ...+++++
T Consensus        18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~   95 (280)
T PF13429_consen   18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEE   95 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccc
Confidence            45678888888888654444323333333 222           555666666554332 44455555555 56667777


Q ss_pred             HHHHHHHHHHcCCCchHHHH---------------HHHHHHHH-cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           70 VMELLNEAIERGVTPNVVTL---------------IHLHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      |.+++.+..+..-.|.....               ..+..... .....|...|..+...+.+.|+.++|.+.+++..+.
T Consensus        96 A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  175 (280)
T PF13429_consen   96 ALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL  175 (280)
T ss_dssp             ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            76666655443222221111               22222222 123456677888888888888888888888887664


Q ss_pred             CCCCC-HHHHHHHHHHhhcC
Q 047010          134 GKIPS-RTLYDTLIKKLDQQ  152 (153)
Q Consensus       134 ~v~p~-~~~~~~li~~~~~~  152 (153)
                      .  |+ ......++..+...
T Consensus       176 ~--P~~~~~~~~l~~~li~~  193 (280)
T PF13429_consen  176 D--PDDPDARNALAWLLIDM  193 (280)
T ss_dssp             ---TT-HHHHHHHHHHHCTT
T ss_pred             C--CCCHHHHHHHHHHHHHC
Confidence            3  53 55566666666544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.91  E-value=0.0018  Score=46.71  Aligned_cols=150  Identities=17%  Similarity=0.182  Sum_probs=106.5

Q ss_pred             CccccCChHHHHHHHHHHHHCCCCCChh-------hchHH----------HHHH-HHHHHHHcCCCccHHHHHHHHHHHH
Q 047010            1 CYCNKNDFFEARKVIDYMFDNGYHPNVT-------TYTIL----------EAYE-MLMNVKNDGLKPDVYTYTAVMDGFC   62 (153)
Q Consensus         1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l----------~a~~-~~~~m~~~g~~~~~~t~~~ll~~~~   62 (153)
                      +|.+.|++.+...+...|.+.|.--++.       +|..+          +++. .+++. ....+.+...-.+++.-+.
T Consensus       196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~-pr~lr~~p~l~~~~a~~li  274 (400)
T COG3071         196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ-PRKLRNDPELVVAYAERLI  274 (400)
T ss_pred             HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc-cHHhhcChhHHHHHHHHHH
Confidence            3677899999999999999988644432       23322          2211 22222 2223456677788889999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCchHHHH----------HHHHHHHH--cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           63 KVGRSNEVMELLNEAIERGVTPNVVTL----------IHLHNVID--IGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        63 ~~g~~~~a~~l~~~m~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ++|+.++|.++..+-.+++..|+...+          ..+..+.+  ..+.-+...+.++=.-|.+.+.|.+|...|+..
T Consensus       275 ~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaA  354 (400)
T COG3071         275 RLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAA  354 (400)
T ss_pred             HcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999999888885555          22222221  222233477888889999999999999999955


Q ss_pred             HHCCCCCCHHHHHHHHHHhhcCC
Q 047010          131 YEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       131 ~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      .+  ..|+..+|..+-+++.+.|
T Consensus       355 l~--~~~s~~~~~~la~~~~~~g  375 (400)
T COG3071         355 LK--LRPSASDYAELADALDQLG  375 (400)
T ss_pred             Hh--cCCChhhHHHHHHHHHHcC
Confidence            44  5699999999988887765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.91  E-value=0.0058  Score=48.01  Aligned_cols=74  Identities=3%  Similarity=0.003  Sum_probs=41.4

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCCh-hhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNV-TTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ..|++++|...++.+.+.  .|+. ..+..+           .|...+++..... +.+...|..+...+...|++++|.
T Consensus        88 ~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~  164 (656)
T PRK15174         88 ASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAI  164 (656)
T ss_pred             hcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHH
Confidence            456677777777776664  2332 222222           5555555555431 224455666666677777777777


Q ss_pred             HHHHHHHHc
Q 047010           72 ELLNEAIER   80 (153)
Q Consensus        72 ~l~~~m~~~   80 (153)
                      ..++.+...
T Consensus       165 ~~~~~~~~~  173 (656)
T PRK15174        165 SLARTQAQE  173 (656)
T ss_pred             HHHHHHHHh
Confidence            777665443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.90  E-value=0.00052  Score=47.79  Aligned_cols=104  Identities=21%  Similarity=0.218  Sum_probs=70.9

Q ss_pred             CccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH
Q 047010           48 KPDVYTYTAVMDGFCKV-----GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK  122 (153)
Q Consensus        48 ~~~~~t~~~ll~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  122 (153)
                      ..|..+|-+.+.-+...     +++|-.-..++.|.+-|+.-|..+|+.+.+++-+|.-....++..+.--|=+.  -.=
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q--Q~C  141 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ--QNC  141 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh--hhH
Confidence            55666676666665443     45666666666777777777766666666666555544444444444444332  345


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       123 a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      +..++++|..+||.||..+=..|+++|.|.+
T Consensus       142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~  172 (406)
T KOG3941|consen  142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN  172 (406)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence            7889999999999999999999999998864

>TIGR00540 hemY_coli hemY protein

Probab=97.88  E-value=0.0018  Score=47.83  Aligned_cols=151  Identities=11%  Similarity=0.079  Sum_probs=95.4

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCC---ccHHHHHHHHHHHHh
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLK---PDVYTYTAVMDGFCK   63 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~---~~~~t~~~ll~~~~~   63 (153)
                      |.+.|++++|..++..+.+.+.. +...+..+               .+.+.+..+.+....   .+...+-.+...+..
T Consensus       197 ~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~  275 (409)
T TIGR00540       197 YIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID  275 (409)
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence            44567888888888888877542 22222211               111233334433221   377889999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCchHH---HH------------HHHHHHHH-cCCCCcH---hhHHHHHHHHHccCcHHHHH
Q 047010           64 VGRSNEVMELLNEAIERGVTPNVV---TL------------IHLHNVID-IGHIPRT---ITFNNVIQALCGVGKIDKAL  124 (153)
Q Consensus        64 ~g~~~~a~~l~~~m~~~~~~~~~~---~~------------~~~~~~~~-~~~~~~~---~~~~~li~~~~~~g~~~~a~  124 (153)
                      .|+.++|.+++++..+..-.....   .+            .....+.. ....|+.   ....++-..+.+.|++++|.
T Consensus       276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~  355 (409)
T TIGR00540       276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA  355 (409)
T ss_pred             CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH
Confidence            999999999999998753222211   22            11111111 1223333   45667888889999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          125 LLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       125 ~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      +.|+........|+...+..+-..+.+.|
T Consensus       356 ~~le~a~a~~~~p~~~~~~~La~ll~~~g  384 (409)
T TIGR00540       356 DAFKNVAACKEQLDANDLAMAADAFDQAG  384 (409)
T ss_pred             HHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence            99996555556799888888777766544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.86  E-value=0.0075  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=10.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 047010           57 VMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus        57 ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      +...+.+.|++++|...+++..+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~  240 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALA  240 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh
Confidence            33444445555555555554443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.76  E-value=0.00033  Score=51.66  Aligned_cols=48  Identities=19%  Similarity=0.272  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      |..++|..|...|..+.++.+++.=...||-||..|++.||+.+.++|
T Consensus       105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~  152 (429)
T PF10037_consen  105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKG  152 (429)
T ss_pred             cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcc
Confidence            446999999999999999999999999999999999999999998876

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK12370 invasion protein regulator; Provisional

Probab=97.70  E-value=0.0051  Score=47.31  Aligned_cols=125  Identities=12%  Similarity=0.000  Sum_probs=80.2

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ..+++++|...++...+.+  |+ ...+..+           +|...+++..+.. +.+...|..+-..+...|++++|.
T Consensus       316 ~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi  392 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEAL  392 (553)
T ss_pred             cchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3466888888888888753  43 3333333           7788888777664 224566777788888899999999


Q ss_pred             HHHHHHHHcCCC-chHHHH---------------HHHHHHHHcCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           72 ELLNEAIERGVT-PNVVTL---------------IHLHNVIDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        72 ~l~~~m~~~~~~-~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      ..+++..+..-. +.....               ..+.+..... .| +...+..+-..+...|++++|...+.++..
T Consensus       393 ~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~  469 (553)
T PRK12370        393 QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST  469 (553)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence            999988775422 111111               1111111111 23 334466677778889999999999988654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.57  E-value=0.0035  Score=46.06  Aligned_cols=106  Identities=17%  Similarity=0.207  Sum_probs=80.6

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHH---------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL   74 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~   74 (153)
                      ..++++.|..+++++.+..  |+....-+-         +|.+++.+..+. .+.|......-.+.+.+.++.+.|+++.
T Consensus       181 ~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iA  257 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIA  257 (395)
T ss_pred             hcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3567899999999999875  554433111         777777776654 2345666777777788999999999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           75 NEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        75 ~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ++..+.  .|+                 +..+|..|..+|.+.|+++.|+..++.|.
T Consensus       258 k~av~l--sP~-----------------~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  258 KKAVEL--SPS-----------------EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHh--Cch-----------------hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            998764  343                 23599999999999999999999998775

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.56  E-value=0.015  Score=45.32  Aligned_cols=95  Identities=14%  Similarity=0.045  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHH-----------------HHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTL-----------------IHLHNV   95 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~~~-----------------~~~~~~   95 (153)
                      +|...+++..+.. +.+...|..+-..+...|++++|.+.|++..+..  |+. ..+                 ..+.+.
T Consensus       383 eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  459 (615)
T TIGR00990       383 KAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRC  459 (615)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4555555544432 2234556666666666666666666666655432  221 111                 111111


Q ss_pred             HHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        96 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .. ....+...|+.+-..+...|++++|...|++..+
T Consensus       460 l~-~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~  495 (615)
T TIGR00990       460 KK-NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE  495 (615)
T ss_pred             HH-hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            11 1112345566666666667777777777666554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.53  E-value=0.012  Score=41.92  Aligned_cols=43  Identities=16%  Similarity=0.148  Sum_probs=27.0

Q ss_pred             HHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+.++.+.+...-..+...+..+|.+.|+.++....+.++.+.
T Consensus       236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            3334444444444456777777888888887777777776554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.52  E-value=0.0056  Score=38.60  Aligned_cols=88  Identities=7%  Similarity=-0.087  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...|++..... +.+...|..+-.++.+.|++++|...|+......  |+                 +...+..+-.+
T Consensus        42 ~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~-----------------~~~a~~~lg~~  101 (144)
T PRK15359         42 RAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--AS-----------------HPEPVYQTGVC  101 (144)
T ss_pred             HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----------------CcHHHHHHHHH
Confidence            6777777776553 3477888999999999999999999999988743  32                 44588888889


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYD  143 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~  143 (153)
                      +...|++++|...|+...+.  .|+...+.
T Consensus       102 l~~~g~~~eAi~~~~~Al~~--~p~~~~~~  129 (144)
T PRK15359        102 LKMMGEPGLAREAFQTAIKM--SYADASWS  129 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence            99999999999999998764  35544443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.52  E-value=0.0062  Score=37.52  Aligned_cols=90  Identities=16%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|.+.++.+...+ +.+...|..+-..+.+.|++++|..+++...+.+  |+                 +..++..+-..
T Consensus        35 ~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~-----------------~~~~~~~la~~   94 (135)
T TIGR02552        35 EALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PD-----------------DPRPYFHAAEC   94 (135)
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-----------------ChHHHHHHHHH
Confidence            6777777776653 3477888888899999999999999999876653  22                 23466667778


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL  145 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~l  145 (153)
                      +...|++++|...|+...+..  |+...+..+
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~  124 (135)
T TIGR02552        95 LLALGEPESALKALDLAIEIC--GENPEYSEL  124 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHHhc--cccchHHHH
Confidence            889999999999999887743  665554433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.50  E-value=0.002  Score=40.57  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      .....++..+...|++++|..+.+.+....  |                 .|...|..+|.+|...|+...|.+.|+.+.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P-----------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD--P-----------------YDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--T-----------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC--C-----------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            456667788889999999999999988753  2                 245699999999999999999999998874


Q ss_pred             -----HCCCCCCHHHHHH
Q 047010          132 -----EHGKIPSRTLYDT  144 (153)
Q Consensus       132 -----~~~v~p~~~~~~~  144 (153)
                           +.|+.|+..+-..
T Consensus       124 ~~l~~elg~~Ps~~~~~l  141 (146)
T PF03704_consen  124 RRLREELGIEPSPETRAL  141 (146)
T ss_dssp             HHHHHHHS----HHHHHH
T ss_pred             HHHHHHhCcCcCHHHHHH
Confidence                 4699999877554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.49  E-value=0.014  Score=43.11  Aligned_cols=132  Identities=8%  Similarity=-0.025  Sum_probs=93.2

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchH-----H--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTI-----L--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-----l--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      .+.|+++.|...+..+.+.  .|+......     +        .|.+.++++.+.. +-+......+...|.+.|++++
T Consensus       129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence            3568889999999988774  455433221     1        7788888887765 3467888999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHH--------HHHHH------------HHH---cCCCCcHhhHHHHHHHHHccCcHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTL--------IHLHN------------VID---IGHIPRTITFNNVIQALCGVGKIDKALLL  126 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~--------~~~~~------------~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~  126 (153)
                      |.+++..+.+.+..++...-        ..+..            ..+   .....+.....++...+...|+.++|...
T Consensus       206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~  285 (398)
T PRK10747        206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI  285 (398)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999998765433211        11111            111   12234666788889999999999999999


Q ss_pred             HHHHHHCCCCCCH
Q 047010          127 LFLMYEHGKIPSR  139 (153)
Q Consensus       127 ~~~m~~~~v~p~~  139 (153)
                      +++..+.  .|+.
T Consensus       286 L~~~l~~--~~~~  296 (398)
T PRK10747        286 ILDGLKR--QYDE  296 (398)
T ss_pred             HHHHHhc--CCCH
Confidence            9888764  3444

>PRK12370 invasion protein regulator; Provisional

Probab=97.47  E-value=0.026  Score=43.56  Aligned_cols=95  Identities=11%  Similarity=-0.121  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHH-----------------HHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTL-----------------IHLHNV   95 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~~~-----------------~~~~~~   95 (153)
                      .|...+++..+.. +-+...|..+-..+...|++++|...|++..+.+  |+. ..+                 ..+...
T Consensus       322 ~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A  398 (553)
T PRK12370        322 KAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINEC  398 (553)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6777777776653 2366778888888899999999999999988764  332 222                 122222


Q ss_pred             HHcCCCCcH-hhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           96 IDIGHIPRT-ITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        96 ~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+  ..|+. ..+..+...+...|++++|...+++..+.
T Consensus       399 l~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        399 LK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             Hh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            22  23432 22333444566688899999999887654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.47  E-value=0.021  Score=41.48  Aligned_cols=104  Identities=11%  Similarity=0.024  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH--------HHHHH------------
Q 047010           35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------IHLHN------------   94 (153)
Q Consensus        35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~--------~~~~~------------   94 (153)
                      |..-++++...+ +.+.........+|.+.|++.+...+...|.+.|.-.++..-        .++++            
T Consensus       172 A~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~  250 (400)
T COG3071         172 ARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT  250 (400)
T ss_pred             HHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            334444444432 356788899999999999999999999999999976666543        11122            


Q ss_pred             ---HHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010           95 ---VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR  139 (153)
Q Consensus        95 ---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~  139 (153)
                         -.....+.+...-.+++.-+.++|+.++|.++.++-.+++..|+.
T Consensus       251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L  298 (400)
T COG3071         251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL  298 (400)
T ss_pred             HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence               122223445667788999999999999999999999888777763

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.46  E-value=0.019  Score=44.72  Aligned_cols=126  Identities=23%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ..|++++|...|+...+..  |+ ...+..+           +|+..+++..+.. +.+...|+.+-..+...|++++|.
T Consensus       411 ~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~  487 (615)
T TIGR00990       411 IKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAI  487 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence            3455666666665555432  22 2222221           5555555554431 234566666677777777777777


Q ss_pred             HHHHHHHHcCCC--c---hHHH-H-------------HHHHHHHHc--CCCC-cHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           72 ELLNEAIERGVT--P---NVVT-L-------------IHLHNVIDI--GHIP-RTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        72 ~l~~~m~~~~~~--~---~~~~-~-------------~~~~~~~~~--~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +.|++.....-.  +   +... +             .-.......  ...| +...+..+...+.+.|++++|...|++
T Consensus       488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~  567 (615)
T TIGR00990       488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER  567 (615)
T ss_pred             HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            777775543211  0   0000 0             000111111  1223 334566777777777777777777776


Q ss_pred             HHH
Q 047010          130 MYE  132 (153)
Q Consensus       130 m~~  132 (153)
                      ..+
T Consensus       568 A~~  570 (615)
T TIGR00990       568 AAE  570 (615)
T ss_pred             HHH
Confidence            654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=97.39  E-value=0.011  Score=41.90  Aligned_cols=117  Identities=15%  Similarity=0.225  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHCCCCCChhhchHH-----------------HHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCC-
Q 047010            8 FFEARKVIDYMFDNGYHPNVTTYTIL-----------------EAYEMLMNVKNDGL---KPDVYTYTAVMDGFCKVGR-   66 (153)
Q Consensus         8 ~~~a~~~~~~m~~~~~~~~~~~~~~l-----------------~a~~~~~~m~~~g~---~~~~~t~~~ll~~~~~~g~-   66 (153)
                      +++...+++.|.+.|++-+.++|-+.                 .+.++++.|++.-.   .++...+.+++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45677888888888888888777543                 77888888887643   4666778888776  3333 


Q ss_pred             ---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC-c--HHHHHHHHHHHHHCCCCCCHH
Q 047010           67 ---SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG-K--IDKALLLLFLMYEHGKIPSRT  140 (153)
Q Consensus        67 ---~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--~~~a~~~~~~m~~~~v~p~~~  140 (153)
                         .+.++.+|+.+.+.|.......                 -+-+-|-+++... +  ...+..+++.+++.|+++...
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~L-----------------Q~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~  218 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDL-----------------QFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM  218 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHH-----------------HHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence               3567778888887776655432                 2333333333222 1  235666777777777776666


Q ss_pred             HHH
Q 047010          141 LYD  143 (153)
Q Consensus       141 ~~~  143 (153)
                      .|.
T Consensus       219 ~yp  221 (297)
T PF13170_consen  219 HYP  221 (297)
T ss_pred             ccc
Confidence            555

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.38  E-value=0.0039  Score=44.02  Aligned_cols=110  Identities=20%  Similarity=0.204  Sum_probs=79.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS   67 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~   67 (153)
                      |.+.++++.|.+.++.|.+.  ..|....+..              +|.-+|+++.+. ..++..+.|.+..+....|++
T Consensus       141 ~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~  217 (290)
T PF04733_consen  141 LLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHY  217 (290)
T ss_dssp             HHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-H
T ss_pred             HHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCH
Confidence            45678999999999999875  3454443333              899999998765 567889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcH-HHHHHHHHHHHHC
Q 047010           68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI-DKALLLLFLMYEH  133 (153)
Q Consensus        68 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~  133 (153)
                      ++|.+++.+....  .|+                 |..+...+|......|+. +.+.+++.+++..
T Consensus       218 ~eAe~~L~~al~~--~~~-----------------~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  218 EEAEELLEEALEK--DPN-----------------DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHHHCCC---CC-----------------HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHh--ccC-----------------CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            9999999986543  232                 223555677777777777 6778888888754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.35  E-value=0.014  Score=44.93  Aligned_cols=138  Identities=20%  Similarity=0.247  Sum_probs=84.2

Q ss_pred             CccccCChHHHHHHHHHHHHCCCCC-ChhhchHH-------HHHHHHHHHHHcCCCccHHHHHHHHH---HHHhcCCHHH
Q 047010            1 CYCNKNDFFEARKVIDYMFDNGYHP-NVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYTAVMD---GFCKVGRSNE   69 (153)
Q Consensus         1 a~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l-------~a~~~~~~m~~~g~~~~~~t~~~ll~---~~~~~g~~~~   69 (153)
                      +|+-.++.+.|.+.|....+-  .| ..++|+.+       +-++....-.+..+..|...||+.-.   .|.|.++.+.
T Consensus       430 cfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~  507 (638)
T KOG1126|consen  430 CFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEF  507 (638)
T ss_pred             hhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhH
Confidence            356678899999999988874  35 56778777       22233333344556678888877554   5889999999


Q ss_pred             HHHHHHHHHHcCCCchHHHH---------------HHHHHH---HHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTL---------------IHLHNV---IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~---------------~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      |+--|++..+  +.|...+.               ..+..+   .....+-...-|.. ...+-..+++++|+..|++++
T Consensus       508 Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~-~~il~~~~~~~eal~~LEeLk  584 (638)
T KOG1126|consen  508 AEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR-ASILFSLGRYVEALQELEELK  584 (638)
T ss_pred             HHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH-HHHHHhhcchHHHHHHHHHHH
Confidence            9999888654  45555544               111111   11111212222333 233345778889999998887


Q ss_pred             HCCCCCCHHHHHHH
Q 047010          132 EHGKIPSRTLYDTL  145 (153)
Q Consensus       132 ~~~v~p~~~~~~~l  145 (153)
                      +  +.|+..+--.+
T Consensus       585 ~--~vP~es~v~~l  596 (638)
T KOG1126|consen  585 E--LVPQESSVFAL  596 (638)
T ss_pred             H--hCcchHHHHHH
Confidence            7  45665544433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.33  E-value=0.0022  Score=34.61  Aligned_cols=65  Identities=28%  Similarity=0.390  Sum_probs=50.5

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHH
Q 047010           62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTL  141 (153)
Q Consensus        62 ~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~  141 (153)
                      .+.|++++|.++|++.....  |+                 |...+-.+..+|.+.|++++|..+++.+....  |+...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~--p~-----------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~   60 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN--PD-----------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPE   60 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT--TT-----------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHH
Confidence            46899999999999997753  22                 34477789999999999999999999987753  77666


Q ss_pred             HHHHHH
Q 047010          142 YDTLIK  147 (153)
Q Consensus       142 ~~~li~  147 (153)
                      |..++.
T Consensus        61 ~~~l~a   66 (68)
T PF14559_consen   61 YQQLLA   66 (68)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            665543

...

>TIGR00540 hemY_coli hemY protein

Probab=97.29  E-value=0.04  Score=40.81  Aligned_cols=128  Identities=10%  Similarity=0.016  Sum_probs=92.0

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChh-----hchHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVT-----TYTIL--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~l--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +.|+.+.|...+....+..  |+..     ++..+        .|.+.++.+.+.. +-+...+..+...+.+.|++++|
T Consensus       130 ~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a  206 (409)
T TIGR00540       130 QRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQAL  206 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHH
Confidence            4588888888888876542  3332     12222        7788888888875 33667889999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHH----H----------------HHHHHHHcCC---CCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010           71 MELLNEAIERGVTPNVVTL----I----------------HLHNVIDIGH---IPRTITFNNVIQALCGVGKIDKALLLL  127 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~----~----------------~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~  127 (153)
                      .+++..+.+.+..+.....    .                .+..+.....   ..+...+-.+...+...|+.++|..++
T Consensus       207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l  286 (409)
T TIGR00540       207 DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII  286 (409)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            9999999998765443321    1                1112222221   137788999999999999999999999


Q ss_pred             HHHHHCC
Q 047010          128 FLMYEHG  134 (153)
Q Consensus       128 ~~m~~~~  134 (153)
                      ++..+..
T Consensus       287 ~~~l~~~  293 (409)
T TIGR00540       287 FDGLKKL  293 (409)
T ss_pred             HHHHhhC
Confidence            9987653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.29  E-value=0.022  Score=37.71  Aligned_cols=128  Identities=12%  Similarity=0.025  Sum_probs=84.1

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      |...|++++|...++...+.. +.+...+..+           ++.+.+.+...... ......+..+-..+...|++++
T Consensus        75 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  153 (234)
T TIGR02521        75 YQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK  153 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence            345688999999998888754 2222333222           67777777765422 2244567777888899999999


Q ss_pred             HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      |.+.+++..+..-. +...+                 ..+...... ...+...+......+...|+.+.|..+.+.+..
T Consensus       154 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       154 AEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999988765321 22222                 222333332 234556677788888899999999999888754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.28  E-value=0.038  Score=45.52  Aligned_cols=17  Identities=12%  Similarity=0.001  Sum_probs=10.0

Q ss_pred             ccCChHHHHHHHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFD   20 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~   20 (153)
                      +.|++++|...|+.+..
T Consensus       521 ~~Gr~eeAi~~~rka~~  537 (987)
T PRK09782        521 QVEDYATALAAWQKISL  537 (987)
T ss_pred             HCCCHHHHHHHHHHHhc
Confidence            45666666666665543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.23  E-value=0.023  Score=41.36  Aligned_cols=79  Identities=20%  Similarity=0.159  Sum_probs=60.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-.+|.+.|++++|+..+++..+..  |+                 +...|..+-.+|.+.|++++|...|++
T Consensus        35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~-----------------~~~a~~~lg~~~~~lg~~~eA~~~~~~   95 (356)
T PLN03088         35 NAELYADRAQANIKLGNFTEAVADANKAIELD--PS-----------------LAKAYLRKGTACMKLEEYQTAKAALEK   95 (356)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-----------------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            56677888888999999999999999987753  32                 234777888888999999999999998


Q ss_pred             HHHCCCCCCHHHHHHHHHHh
Q 047010          130 MYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~  149 (153)
                      ..+.  .|+.......+..|
T Consensus        96 al~l--~P~~~~~~~~l~~~  113 (356)
T PLN03088         96 GASL--APGDSRFTKLIKEC  113 (356)
T ss_pred             HHHh--CCCCHHHHHHHHHH
Confidence            8764  46665555555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.22  E-value=0.0096  Score=33.12  Aligned_cols=64  Identities=22%  Similarity=0.287  Sum_probs=48.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...+..+-..+...|++++|.+.|+...+...                   .+..++..+...+...|+++.|...+..
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~   93 (100)
T cd00189          33 NADAYYNLAAAYYKLGKYEEALEDYEKALELDP-------------------DNAKAYYNLGLAYYKLGKYEEALEAYEK   93 (100)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------------cchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            336677778888888999999999988766432                   1224777888888899999999999887


Q ss_pred             HHH
Q 047010          130 MYE  132 (153)
Q Consensus       130 m~~  132 (153)
                      ..+
T Consensus        94 ~~~   96 (100)
T cd00189          94 ALE   96 (100)
T ss_pred             HHc
Confidence            754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.21  E-value=0.053  Score=40.59  Aligned_cols=103  Identities=12%  Similarity=0.055  Sum_probs=65.6

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH--------------HHHHHHH-HcCCCCcHhhHHHHHH
Q 047010           48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------IHLHNVI-DIGHIPRTITFNNVIQ  112 (153)
Q Consensus        48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~--------------~~~~~~~-~~~~~~~~~~~~~li~  112 (153)
                      +.|....+-|-+.|-+.|+-..|.+.+-.--+ =.+.+..+.              ..+..+. ..-++|+..-|..||.
T Consensus       589 p~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmia  667 (840)
T KOG2003|consen  589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIA  667 (840)
T ss_pred             CCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            34566666666777777766666665433111 122222222              2223333 2457899999999987


Q ss_pred             HHH-ccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          113 ALC-GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       113 ~~~-~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      .|. +.|++..|+++++.... .+.-|......|++.|..-
T Consensus       668 sc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dl  707 (840)
T KOG2003|consen  668 SCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDL  707 (840)
T ss_pred             HHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccc
Confidence            654 67899999999999754 4566788888888776543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.03  Score=41.76  Aligned_cols=146  Identities=12%  Similarity=0.069  Sum_probs=87.3

Q ss_pred             ccCChHHHHHHHHHHHHCCC--CCChhhchHH-------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGY--HPNVTTYTIL-------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL   74 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l-------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~   74 (153)
                      ...|+++|..+|+++.+..-  --|..+|..+       ..+..+-+-...--+--..|..++-+-|+-.++.|+|...|
T Consensus       274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF  353 (559)
T KOG1155|consen  274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF  353 (559)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence            45789999999999998631  1233444322       22222222222211234456666777777777778888888


Q ss_pred             HHHHHcCCCch-HHHH-----------------------------------------------HHHHHHHHcCCCC-cHh
Q 047010           75 NEAIERGVTPN-VVTL-----------------------------------------------IHLHNVIDIGHIP-RTI  105 (153)
Q Consensus        75 ~~m~~~~~~~~-~~~~-----------------------------------------------~~~~~~~~~~~~~-~~~  105 (153)
                      ++-++.+-.-. ..|+                                               .+.---.....+| |..
T Consensus       354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR  433 (559)
T KOG1155|consen  354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR  433 (559)
T ss_pred             HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence            77666432211 1121                                               1111112234555 778


Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~  150 (153)
                      .|.+|-.+|.+.++.++|..-|++....|= .+...+..|-+.+-
T Consensus       434 lw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye  477 (559)
T KOG1155|consen  434 LWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYE  477 (559)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHH
Confidence            999999999999999999999998877653 24555655555543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.20  E-value=0.009  Score=45.87  Aligned_cols=129  Identities=11%  Similarity=0.068  Sum_probs=81.7

Q ss_pred             ccccCChHHHHHHHHHHHHCC--CCCChhhchHH-------HHHHHHH-HHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNG--YHPNVTTYTIL-------EAYEMLM-NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l-------~a~~~~~-~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      |-.-+++++|+.+|+..++..  ..-+...|.+.       .++..+. ++... -+-...||.++=++|+-+++.+.|.
T Consensus       363 yFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Ai  441 (638)
T KOG1126|consen  363 YFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAI  441 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHH
Confidence            445578889999999988752  11223344333       2333332 22221 1335699999999999999999999


Q ss_pred             HHHHHHHHcCCCc-hHHHH-------------HHHHHHHHcCCCCcHhhHHHHH---HHHHccCcHHHHHHHHHHHHHC
Q 047010           72 ELLNEAIERGVTP-NVVTL-------------IHLHNVIDIGHIPRTITFNNVI---QALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        72 ~l~~~m~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      +.|++..+..  | ...+|             +....-+...+..|...||++-   -.|.+.++++.|.-.|+...+-
T Consensus       442 k~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I  518 (638)
T KOG1126|consen  442 KCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI  518 (638)
T ss_pred             HHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC
Confidence            9999977643  3 22333             2223333445667777777654   3577888888888888776653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.17  E-value=0.064  Score=44.24  Aligned_cols=122  Identities=11%  Similarity=-0.052  Sum_probs=65.9

Q ss_pred             CChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 047010            6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL   74 (153)
Q Consensus         6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~   74 (153)
                      ++..+|...+......  .|+......+           +|...++++...  .|+...+..+...+.+.|++++|...+
T Consensus       490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l  565 (987)
T PRK09782        490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL  565 (987)
T ss_pred             CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5566677766666554  2443322111           666666665443  333344555566677777777777777


Q ss_pred             HHHHHcCCCchHHH-H-HHHHHH------------HH--cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           75 NEAIERGVTPNVVT-L-IHLHNV------------ID--IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        75 ~~m~~~~~~~~~~~-~-~~~~~~------------~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      ++..+..  |+... . .+....            ..  ....|+...|..+-..+.+.|++++|...+++..+.
T Consensus       566 ~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l  638 (987)
T PRK09782        566 QQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL  638 (987)
T ss_pred             HHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            7766553  22221 1 111111            11  122355566666666777777777777777666554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.04  E-value=0.0029  Score=35.87  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=53.8

Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 047010            5 KNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTP   84 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~   84 (153)
                      .|+++.|..+++.+.+..  |                     ..++...+-.+-.+|.+.|++++|.++++. .+.  .|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~--~---------------------~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~   55 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELD--P---------------------TNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DP   55 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHH--C---------------------GTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HH
T ss_pred             CccHHHHHHHHHHHHHHC--C---------------------CChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CC
Confidence            466777777777766641  1                     012445566689999999999999999988 221  12


Q ss_pred             hHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           85 NVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +.                 ....-.+-.++.+.|++++|..+|++
T Consensus        56 ~~-----------------~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   56 SN-----------------PDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             CH-----------------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             CC-----------------HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            11                 11222446788899999999999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.03  E-value=0.033  Score=35.01  Aligned_cols=76  Identities=13%  Similarity=0.131  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDV--YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI  111 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~--~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  111 (153)
                      +|...|+........|+.  ...-.+-..+...|++++|+..++......                    .....+...-
T Consensus        66 ~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--------------------~~~~~~~~~G  125 (145)
T PF09976_consen   66 EAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--------------------FKALAAELLG  125 (145)
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--------------------hHHHHHHHHH
Confidence            555555555554422221  223334455555566666665554421111                    1234667778


Q ss_pred             HHHHccCcHHHHHHHHHH
Q 047010          112 QALCGVGKIDKALLLLFL  129 (153)
Q Consensus       112 ~~~~~~g~~~~a~~~~~~  129 (153)
                      +.|.+.|++++|...|+.
T Consensus       126 di~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  126 DIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHCCCHHHHHHHHHH
Confidence            889999999999999875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.99  E-value=0.072  Score=44.76  Aligned_cols=105  Identities=12%  Similarity=0.018  Sum_probs=70.3

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ...|+.++|..+++.     .+.+...+..+           +|.+.+++..+.. +.+...+..+...|...|+.++|+
T Consensus       584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~  657 (1157)
T PRK11447        584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR  657 (1157)
T ss_pred             HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456788888887762     13333333333           7788888877763 236788889999999999999999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        72 ~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      +.++...+.  .|+.                 ...+..+...+...|++++|..+++.+..
T Consensus       658 ~~l~~ll~~--~p~~-----------------~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        658 AQLAKLPAT--ANDS-----------------LNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HHHHHHhcc--CCCC-----------------hHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999977653  3332                 22444555566667777777777776654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.97  E-value=0.0088  Score=33.23  Aligned_cols=66  Identities=18%  Similarity=0.338  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG--VTPNVVTLIHLHNVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .+|+.+-..|.+.|++++|++.|++..+..  ..++ .              |+ ..+++.+-..|...|++++|...++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~--------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~   70 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD-H--------------PDTANTLNNLGECYYRLGDYEEALEYYQ   70 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH-H--------------HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC-C--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            578899999999999999999999886531  2221 1              22 4589999999999999999999998


Q ss_pred             HHHH
Q 047010          129 LMYE  132 (153)
Q Consensus       129 ~m~~  132 (153)
                      +..+
T Consensus        71 ~al~   74 (78)
T PF13424_consen   71 KALD   74 (78)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7643

...

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.95  E-value=0.013  Score=41.87  Aligned_cols=119  Identities=13%  Similarity=0.069  Sum_probs=58.8

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHH-HHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTY-TAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~-~~ll~~~~~~g~~~~   69 (153)
                      |.+-|.+.+|.+.+....+..  |.+.||-.|           .|+.++.+-.+.  .|-.+|| .-+-..+-..++.++
T Consensus       233 ylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~  308 (478)
T KOG1129|consen  233 YLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQED  308 (478)
T ss_pred             HHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHH
Confidence            445566666666666665542  333333322           333333333322  2333333 223333444455555


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT  144 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~  144 (153)
                      |.++++...+..                   .-|+....++-.+|-..++++.|+++++++..-|+. +...|..
T Consensus       309 a~~lYk~vlk~~-------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~N  363 (478)
T KOG1129|consen  309 ALQLYKLVLKLH-------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCN  363 (478)
T ss_pred             HHHHHHHHHhcC-------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhh
Confidence            555555544321                   123445556666666677777777777777766653 3444443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.92  E-value=0.0057  Score=42.79  Aligned_cols=72  Identities=18%  Similarity=0.228  Sum_probs=47.5

Q ss_pred             CChHHHHHHHHHHHHCCCCCChhhchHH---------------------------HHHHHHHHHHHcCCCccHHHHHHHH
Q 047010            6 NDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------------EAYEMLMNVKNDGLKPDVYTYTAVM   58 (153)
Q Consensus         6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------------------~a~~~~~~m~~~g~~~~~~t~~~ll   58 (153)
                      ++++--...+..|++.|+..|..+|+.|                           =+..++++|...|+.||..+-..++
T Consensus        86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv  165 (406)
T KOG3941|consen   86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV  165 (406)
T ss_pred             chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence            4444455556677777777777777766                           4567777777777777777777777


Q ss_pred             HHHHhcCCH-HHHHHHHHHH
Q 047010           59 DGFCKVGRS-NEVMELLNEA   77 (153)
Q Consensus        59 ~~~~~~g~~-~~a~~l~~~m   77 (153)
                      +++++.+.. .+..++.--|
T Consensus       166 n~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  166 NAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             HHhccccccHHHHHHHHHhh
Confidence            777777754 3344444344

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.91  E-value=0.011  Score=31.56  Aligned_cols=57  Identities=18%  Similarity=0.271  Sum_probs=47.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        58 l~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      -..+.+.|++++|.+.|++.++..  |+                 +...+..+-..+.+.|++++|...|++..+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~--P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD--PD-----------------NPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS--TT-----------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356789999999999999998865  43                 2348888899999999999999999998764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.053  Score=41.29  Aligned_cols=128  Identities=16%  Similarity=0.133  Sum_probs=91.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcC--CCc----cHHHHHHHHHHHHhc
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG--LKP----DVYTYTAVMDGFCKV   64 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g--~~~----~~~t~~~ll~~~~~~   64 (153)
                      |.+.++++.|.+.|.+.... .+.|+...+.+           +|...|+.-....  +.+    -.-+++.|=-.|.+.
T Consensus       390 y~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl  468 (611)
T KOG1173|consen  390 YMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL  468 (611)
T ss_pred             HHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence            44667888899988887764 24555666555           6777776554211  111    223456666678889


Q ss_pred             CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010           65 GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT  144 (153)
Q Consensus        65 g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~  144 (153)
                      +..++|...+++-....  |                 .|..++.++--.|...|+++.|.+.|.+..  .+.|+..+.+.
T Consensus       469 ~~~~eAI~~~q~aL~l~--~-----------------k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~  527 (611)
T KOG1173|consen  469 NKYEEAIDYYQKALLLS--P-----------------KDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISE  527 (611)
T ss_pred             hhHHHHHHHHHHHHHcC--C-----------------CchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHH
Confidence            99999999999877643  1                 345588898889999999999999999754  46799988888


Q ss_pred             HHHHhhc
Q 047010          145 LIKKLDQ  151 (153)
Q Consensus       145 li~~~~~  151 (153)
                      +++.+..
T Consensus       528 lL~~aie  534 (611)
T KOG1173|consen  528 LLKLAIE  534 (611)
T ss_pred             HHHHHHH
Confidence            8876643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.90  E-value=0.13  Score=41.74  Aligned_cols=78  Identities=10%  Similarity=0.040  Sum_probs=58.6

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcC
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDG-----LKPDVYTYTAVMDGFCKVG   65 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g-----~~~~~~t~~~ll~~~~~~g   65 (153)
                      +...++.+++..-|+.|...+.+.-..+-..+           +|..++.++.+..     ..++......|.-+|...+
T Consensus       302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e  381 (822)
T PRK14574        302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE  381 (822)
T ss_pred             HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence            34568899999999999987743222222222           8999999987653     2334555788999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 047010           66 RSNEVMELLNEAIE   79 (153)
Q Consensus        66 ~~~~a~~l~~~m~~   79 (153)
                      ++++|..+++.+.+
T Consensus       382 ~~~~A~~~l~~~~~  395 (822)
T PRK14574        382 QLDKAYQFAVNYSE  395 (822)
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999999987

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.88  E-value=0.012  Score=41.34  Aligned_cols=125  Identities=14%  Similarity=0.122  Sum_probs=88.0

Q ss_pred             cCChHHHHHHHHHHHHCC-CCCChhhchHH----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010            5 KNDFFEARKVIDYMFDNG-YHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL   73 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l   73 (153)
                      .+..+.|+.+|...++.+ +..+++...++          .|..+|+...+. +..+..-|..-++-+.+.++.+.|..+
T Consensus        14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~l   92 (280)
T PF05843_consen   14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARAL   92 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence            345789999999998653 23333333333          488888877765 456778889999999999999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010           74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK  148 (153)
Q Consensus        74 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~  148 (153)
                      |++.... ++++..               ....|...+.-=.+.|+.+.+..+.+++.+.  .|+...+..+++-
T Consensus        93 fer~i~~-l~~~~~---------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r  149 (280)
T PF05843_consen   93 FERAISS-LPKEKQ---------------SKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR  149 (280)
T ss_dssp             HHHHCCT-SSCHHH---------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred             HHHHHHh-cCchhH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence            9998755 444321               2358999999999999999999999999874  4555555545443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.88  E-value=0.012  Score=36.94  Aligned_cols=60  Identities=20%  Similarity=0.249  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-----RGVTPNVVTLIHLHN   94 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~~~~~~~~   94 (153)
                      .+.+.++.+.... +.|...|..+|.+|.+.|+..+|.++|+++.+     .|+.|+..+-.+..+
T Consensus        80 ~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~  144 (146)
T PF03704_consen   80 EALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE  144 (146)
T ss_dssp             HHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence            4555555555442 35889999999999999999999999998754     588888886555444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.87  E-value=0.048  Score=34.35  Aligned_cols=78  Identities=8%  Similarity=-0.165  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .+...-..+.+.|++++|.+.|+.....  .|+                 +...|..+-..+.+.|++++|...|+...+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMA--QPW-----------------SWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3556677889999999999999998764  332                 445899999999999999999999999987


Q ss_pred             CCCCCCHHHHHHHHHHhh
Q 047010          133 HGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       133 ~~v~p~~~~~~~li~~~~  150 (153)
                      .+ ..+...+..+-.++.
T Consensus        87 l~-p~~~~a~~~lg~~l~  103 (144)
T PRK15359         87 LD-ASHPEPVYQTGVCLK  103 (144)
T ss_pred             cC-CCCcHHHHHHHHHHH
Confidence            54 234455544444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.84  E-value=0.24  Score=41.78  Aligned_cols=71  Identities=15%  Similarity=0.078  Sum_probs=40.7

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ..|++++|...|+...+.  .|+ ...+..+           +|...++++.+... .+...+..+...+.+.++.++|+
T Consensus       473 ~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al  549 (1157)
T PRK11447        473 NQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAAL  549 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHH
Confidence            468888888888888775  344 2222222           67777777665422 23333333333455566666666


Q ss_pred             HHHHHH
Q 047010           72 ELLNEA   77 (153)
Q Consensus        72 ~l~~~m   77 (153)
                      ..++.+
T Consensus       550 ~~l~~l  555 (1157)
T PRK11447        550 AHLNTL  555 (1157)
T ss_pred             HHHHhC
Confidence            666554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.80  E-value=0.092  Score=42.20  Aligned_cols=134  Identities=9%  Similarity=-0.018  Sum_probs=86.9

Q ss_pred             cccCChHHHHHHHHHHHHCCCC-CCh-hhchH-H--------HHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYH-PNV-TTYTI-L--------EAYEMLMNVKNDGLKP---DVYTYTAVMDGFCKVGRSN   68 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~-l--------~a~~~~~~m~~~g~~~---~~~t~~~ll~~~~~~g~~~   68 (153)
                      ...|++++|...|+.+.+.+-+ |+. ..+.. +        +|...++++.+.....   ....+..+..++.+.|+++
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence            3457899999999999887522 321 12111 1        8888898877653211   1345667777889999999


Q ss_pred             HHHHHHHHHHHcC-----------CCchHH---HH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010           69 EVMELLNEAIERG-----------VTPNVV---TL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGV  117 (153)
Q Consensus        69 ~a~~l~~~m~~~~-----------~~~~~~---~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~  117 (153)
                      +|..+++.+....           ..|+..   .+                 ..+..+.. ...-+...+..+...+...
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-~~P~n~~l~~~lA~l~~~~  406 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-NAPGNQGLRIDYASVLQAR  406 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Confidence            9999999997652           112311   11                 12222221 1223456788888888889


Q ss_pred             CcHHHHHHHHHHHHHCCCCCCH
Q 047010          118 GKIDKALLLLFLMYEHGKIPSR  139 (153)
Q Consensus       118 g~~~~a~~~~~~m~~~~v~p~~  139 (153)
                      |++++|...+++..+..  |+.
T Consensus       407 g~~~~A~~~l~~al~l~--Pd~  426 (765)
T PRK10049        407 GWPRAAENELKKAEVLE--PRN  426 (765)
T ss_pred             CCHHHHHHHHHHHHhhC--CCC
Confidence            99999999998877643  654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.79  E-value=0.1  Score=42.26  Aligned_cols=145  Identities=10%  Similarity=0.134  Sum_probs=84.1

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCCh--hhchHH----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNV--TTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      ++.|++..|...|.+..+..  |+.  ..+..+          .|...+++.... ...+.....++...|...|++++|
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            57899999999999998763  543  222222          777777776611 112223333335578888999999


Q ss_pred             HHHHHHHHHcCC-CchHHHH------------HHHHHHHH-cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010           71 MELLNEAIERGV-TPNVVTL------------IHLHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI  136 (153)
Q Consensus        71 ~~l~~~m~~~~~-~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~  136 (153)
                      .++|+++.+..- .|+....            ..+....+ ....|+...+-.++..+...++..+|+..++++.+..  
T Consensus       122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--  199 (822)
T PRK14574        122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--  199 (822)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--
Confidence            999999987642 2222211            11111111 1234555556444444444556656888888887754  


Q ss_pred             C-CHHHHHHHHHHhhcC
Q 047010          137 P-SRTLYDTLIKKLDQQ  152 (153)
Q Consensus       137 p-~~~~~~~li~~~~~~  152 (153)
                      | +...+..++.+..+.
T Consensus       200 P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        200 PTSEEVLKNHLEILQRN  216 (822)
T ss_pred             CCCHHHHHHHHHHHHHc
Confidence            4 344445555555443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.77  E-value=0.035  Score=42.26  Aligned_cols=130  Identities=19%  Similarity=0.185  Sum_probs=80.1

Q ss_pred             ccccCChHHHHHHHHHHHHC-----CC-CCChhhc-hHH-----------HHHHHHHHHH-------HcCCCccHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDN-----GY-HPNVTTY-TIL-----------EAYEMLMNVK-------NDGLKPDVYTYTA   56 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~-----~~-~~~~~~~-~~l-----------~a~~~~~~m~-------~~g~~~~~~t~~~   56 (153)
                      |...|+++.|..++.+..+.     |. -|...+. +.+           +|..+|.+..       ...-+.-..+++.
T Consensus       209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n  288 (508)
T KOG1840|consen  209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN  288 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            56789999999999887764     21 1222211 111           5555555433       2222223366788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH---c--C-CCchHHHH------------------HHH---HHHHHcCCCCcH----h
Q 047010           57 VMDGFCKVGRSNEVMELLNEAIE---R--G-VTPNVVTL------------------IHL---HNVIDIGHIPRT----I  105 (153)
Q Consensus        57 ll~~~~~~g~~~~a~~l~~~m~~---~--~-~~~~~~~~------------------~~~---~~~~~~~~~~~~----~  105 (153)
                      |-..|.+.|++++|...++...+   .  | ..|.....                  .++   ......-+.++.    .
T Consensus       289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~  368 (508)
T KOG1840|consen  289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK  368 (508)
T ss_pred             HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence            88889999999999988887543   1  2 22333322                  111   112222222322    5


Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      +++.+-..|-+.|++++|.++|+...
T Consensus       369 ~~~nl~~l~~~~gk~~ea~~~~k~ai  394 (508)
T KOG1840|consen  369 IYANLAELYLKMGKYKEAEELYKKAI  394 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            79999999999999999999999874

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.70  E-value=0.17  Score=38.10  Aligned_cols=143  Identities=13%  Similarity=0.124  Sum_probs=103.6

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHH----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL   73 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l   73 (153)
                      .+|++++|...|.+.......-....||.-          +|+..|-.+..- ..-+......+-+-|--..+...|.++
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            369999999999999876544444444422          788888766532 234667777788888888899999988


Q ss_pred             HHHHHHcC-CCchHHHHHHHHHHHHc-C---------------CCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010           74 LNEAIERG-VTPNVVTLIHLHNVIDI-G---------------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI  136 (153)
Q Consensus        74 ~~~m~~~~-~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~  136 (153)
                      +-+  ... ++-|+.++.-+.++.+. |               +.-|+.+...+-..|....=++++..+|++..-  ++
T Consensus       581 ~~q--~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq  656 (840)
T KOG2003|consen  581 LMQ--ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ  656 (840)
T ss_pred             HHH--hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence            755  444 45556666555444432 1               223677888888889888888999999998644  68


Q ss_pred             CCHHHHHHHHHHhhc
Q 047010          137 PSRTLYDTLIKKLDQ  151 (153)
Q Consensus       137 p~~~~~~~li~~~~~  151 (153)
                      |+.+-|-.+|..|.|
T Consensus       657 p~~~kwqlmiasc~r  671 (840)
T KOG2003|consen  657 PNQSKWQLMIASCFR  671 (840)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            999999999988876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.67  E-value=0.25  Score=39.79  Aligned_cols=108  Identities=7%  Similarity=0.019  Sum_probs=66.4

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME   72 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~   72 (153)
                      ..|+.++|..+|....... +.+...+..+           .|.+.+++..... +.+...+..+...+...|+.++|..
T Consensus        27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~  104 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV  104 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3577788888888776522 2222223222           6677777765542 2245556677777888888888888


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        73 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+++..+.  .|+                 +.. +..+-..+...|++++|...+++..+.
T Consensus       105 ~l~~~l~~--~P~-----------------~~~-~~~la~~l~~~g~~~~Al~~l~~al~~  145 (765)
T PRK10049        105 KAKQLVSG--APD-----------------KAN-LLALAYVYKRAGRHWDELRAMTQALPR  145 (765)
T ss_pred             HHHHHHHh--CCC-----------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            88887664  232                 223 555666666667777777777666553

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.60  E-value=0.11  Score=38.34  Aligned_cols=95  Identities=21%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHHcCCCCcHhhHHHHHHHHHccC
Q 047010           54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVIDIGHIPRTITFNNVIQALCGVG  118 (153)
Q Consensus        54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g  118 (153)
                      -.+++..+...++++.|.++|+++.+..  |+....               .++.+... ..+.|......-..-+.+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~-~~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALK-ENPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcC
Confidence            4566777778889999999999998875  555443               22222221 12235666777777788999


Q ss_pred             cHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCC
Q 047010          119 KIDKALLLLFLMYEHGKIP-SRTLYDTLIKKLDQQP  153 (153)
Q Consensus       119 ~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~~~~~g  153 (153)
                      +++.|+.+.+++.+.  .| +..+|..|.++|.+.|
T Consensus       249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~  282 (395)
T PF09295_consen  249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLG  282 (395)
T ss_pred             CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcC
Confidence            999999999999875  35 4569999999988764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.51  E-value=0.047  Score=29.39  Aligned_cols=64  Identities=19%  Similarity=0.244  Sum_probs=54.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC-cHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG-KIDKALLLLF  128 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~  128 (153)
                      +...|..+=..+.+.|++++|+..|.+..+..  |+.                 ...|..+-.++.+.| ++++|...++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~-----------------~~~~~~~g~~~~~~~~~~~~A~~~~~   62 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNN-----------------AEAYYNLGLAYMKLGKDYEEAIEDFE   62 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTH-----------------HHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC-----------------HHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            45778888899999999999999999998863  432                 348888999999999 8999999998


Q ss_pred             HHHH
Q 047010          129 LMYE  132 (153)
Q Consensus       129 ~m~~  132 (153)
                      ...+
T Consensus        63 ~al~   66 (69)
T PF13414_consen   63 KALK   66 (69)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

...

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.46  E-value=0.092  Score=32.20  Aligned_cols=81  Identities=12%  Similarity=0.057  Sum_probs=59.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +......+...+.+.|+.++|.+.|+.....+  |+                 +...|..+-..+.+.|+++.|...++.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~   76 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PY-----------------NSRYWLGLAACCQMLKEYEEAIDAYAL   76 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677788899999999999999987753  22                 334788888999999999999999998


Q ss_pred             HHHCCCCCCHHHHHHHHHHhh
Q 047010          130 MYEHGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~  150 (153)
                      ..+.+ ..+...+..+-..+.
T Consensus        77 ~~~~~-p~~~~~~~~la~~~~   96 (135)
T TIGR02552        77 AAALD-PDDPRPYFHAAECLL   96 (135)
T ss_pred             HHhcC-CCChHHHHHHHHHHH
Confidence            87654 334455544444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.46  E-value=0.057  Score=29.80  Aligned_cols=77  Identities=21%  Similarity=0.247  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .|..+...+...|++++|.+.+++..+..  |+                 +...+..+...+...|++++|...|+...+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   62 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PD-----------------NADAYYNLAAAYYKLGKYEEALEDYEKALE   62 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--Cc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35567778888999999999999987653  21                 124677788888889999999999998876


Q ss_pred             CCCCCCHHHHHHHHHHh
Q 047010          133 HGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       133 ~~v~p~~~~~~~li~~~  149 (153)
                      ... .+..++..+...+
T Consensus        63 ~~~-~~~~~~~~~~~~~   78 (100)
T cd00189          63 LDP-DNAKAYYNLGLAY   78 (100)
T ss_pred             CCC-cchhHHHHHHHHH
Confidence            542 2334444444443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.43  E-value=0.18  Score=35.75  Aligned_cols=97  Identities=11%  Similarity=0.025  Sum_probs=66.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH--------------------HHHHHHHHcCCCCcHhhHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------------IHLHNVIDIGHIPRTITFN  108 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~  108 (153)
                      -+.......+..|.+.++++.|.+.++.|.+.  ..|....                    .++.++ .....++..+.|
T Consensus       129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El-~~~~~~t~~~ln  205 (290)
T PF04733_consen  129 GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL-SDKFGSTPKLLN  205 (290)
T ss_dssp             TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH-HCCS--SHHHHH
T ss_pred             CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH-HhccCCCHHHHH
Confidence            45667778889999999999999999999764  3444433                    333333 334557888999


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010          109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       109 ~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~  149 (153)
                      .+..+....|++++|..++.+..+.+ .-+..+...+|-..
T Consensus       206 g~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~  245 (290)
T PF04733_consen  206 GLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCS  245 (290)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence            99999999999999999999876543 22455555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.28  Score=36.91  Aligned_cols=66  Identities=17%  Similarity=0.150  Sum_probs=54.2

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010           48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL  127 (153)
Q Consensus        48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  127 (153)
                      +-|+..|.+|=++|.+.++.++|.+.|......|-.                   +...+..+-..|-+.++..+|...|
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-------------------e~~~l~~LakLye~l~d~~eAa~~y  489 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-------------------EGSALVRLAKLYEELKDLNEAAQYY  489 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-------------------chHHHHHHHHHHHHHHhHHHHHHHH
Confidence            348899999999999999999999999998876532                   2247888888888888898888888


Q ss_pred             HHHHH
Q 047010          128 FLMYE  132 (153)
Q Consensus       128 ~~m~~  132 (153)
                      +...+
T Consensus       490 ek~v~  494 (559)
T KOG1155|consen  490 EKYVE  494 (559)
T ss_pred             HHHHH
Confidence            77654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.37  E-value=0.13  Score=39.35  Aligned_cols=95  Identities=20%  Similarity=0.115  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--Cch-HHHH---------------------HHHHHHHHcCC-CC
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG----V--TPN-VVTL---------------------IHLHNVIDIGH-IP  102 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~----~--~~~-~~~~---------------------~~~~~~~~~~~-~~  102 (153)
                      -+|+.|=..|-+.|++++|+++|++.....    -  .+. ...+                     ....-+...|. .|
T Consensus       368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~  447 (508)
T KOG1840|consen  368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP  447 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence            679999999999999999999999875521    1  111 1111                     00011112222 23


Q ss_pred             c-HhhHHHHHHHHHccCcHHHHHHHHHHHH---H---CCCCCCHHHHHHHH
Q 047010          103 R-TITFNNVIQALCGVGKIDKALLLLFLMY---E---HGKIPSRTLYDTLI  146 (153)
Q Consensus       103 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~---~---~~v~p~~~~~~~li  146 (153)
                      + ..+|.-|...|.+.|+++.|..+.+...   +   .+..|+........
T Consensus       448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (508)
T KOG1840|consen  448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRL  498 (508)
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhh
Confidence            3 3679999999999999999999887664   2   23455555554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.28  E-value=0.071  Score=28.99  Aligned_cols=64  Identities=20%  Similarity=0.235  Sum_probs=51.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010           59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS  138 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~  138 (153)
                      ..|.+.+++++|.++++.+.+.+  |+                 +...|...-..+.+.|++++|...|+...+.+  |+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~--p~-----------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~   61 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD--PD-----------------DPELWLQRARCLFQLGRYEEALEDLERALELS--PD   61 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC--cc-----------------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CC
Confidence            56889999999999999998763  32                 34577788889999999999999999998754  55


Q ss_pred             HHHHH
Q 047010          139 RTLYD  143 (153)
Q Consensus       139 ~~~~~  143 (153)
                      ...-.
T Consensus        62 ~~~~~   66 (73)
T PF13371_consen   62 DPDAR   66 (73)
T ss_pred             cHHHH
Confidence            54443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.26  E-value=0.11  Score=30.87  Aligned_cols=68  Identities=10%  Similarity=0.068  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ...+..+-..+.+.|++++|.+.|+......  |+..              ....++..+...+.+.|++++|...++++
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~--------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSP--------------KAPDALLKLGMSLQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCC--------------cccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            3456668888999999999999999987642  1100              11235667777888999999999999999


Q ss_pred             HHCC
Q 047010          131 YEHG  134 (153)
Q Consensus       131 ~~~~  134 (153)
                      .+..
T Consensus       103 ~~~~  106 (119)
T TIGR02795       103 IKRY  106 (119)
T ss_pred             HHHC
Confidence            8764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.21  E-value=0.11  Score=39.72  Aligned_cols=75  Identities=11%  Similarity=0.087  Sum_probs=46.2

Q ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 047010           36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALC  115 (153)
Q Consensus        36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~  115 (153)
                      .+.++++...-..--..+|...|+.-.|..-++.|..+|.+..+.+..+.                 +++++++++..||
T Consensus       351 ~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h-----------------hVfVa~A~mEy~c  413 (656)
T KOG1914|consen  351 HEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH-----------------HVFVAAALMEYYC  413 (656)
T ss_pred             HHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc-----------------hhhHHHHHHHHHh
Confidence            34444444432223346788888888888888888888888888777662                 2345555555555


Q ss_pred             ccCcHHHHHHHHH
Q 047010          116 GVGKIDKALLLLF  128 (153)
Q Consensus       116 ~~g~~~~a~~~~~  128 (153)
                       .++.+-|.++|+
T Consensus       414 -skD~~~AfrIFe  425 (656)
T KOG1914|consen  414 -SKDKETAFRIFE  425 (656)
T ss_pred             -cCChhHHHHHHH
Confidence             334555555554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.19  E-value=0.012  Score=31.60  Aligned_cols=53  Identities=17%  Similarity=0.293  Sum_probs=41.1

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      +.|++++|..+|..+.+..                         +-|...+-.+..+|.+.|++++|.++++++....
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-------------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-------------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-------------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hccCHHHHHHHHHHHHHHC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4577777777777776642                         2377778889999999999999999999987763

...

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.25  Score=34.46  Aligned_cols=47  Identities=19%  Similarity=0.340  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      +|+-+|++|.++ ..|+.-+.+-...++...|++++|+.++++.....
T Consensus       191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            788888888875 57888899999999999999999999999987754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.16  E-value=0.39  Score=38.29  Aligned_cols=106  Identities=12%  Similarity=0.055  Sum_probs=78.0

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +.|.+++|+.+++...+.  .|+..-.-..            +|+..+++..+.  .| +......+-.++.+.|+.++|
T Consensus        98 ~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A  173 (694)
T PRK15179         98 AAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQA  173 (694)
T ss_pred             HcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHH
Confidence            457888898888888874  6776543222            777777777665  34 445667777788889999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      ..+|++....+  |+                 +..++...-.++-..|+.++|...|+...+
T Consensus       174 ~~~y~~~~~~~--p~-----------------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        174 DACFERLSRQH--PE-----------------FENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHHHhcC--CC-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999988732  22                 134777888888889999999999988765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.16  E-value=0.32  Score=36.60  Aligned_cols=46  Identities=20%  Similarity=0.244  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      .++..++.+... .+-|..-+....+.+.+.++.++|.+.++.+...
T Consensus       324 ~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l  369 (484)
T COG4783         324 EALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL  369 (484)
T ss_pred             hHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            444444444433 1224444455555566666666666666665543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.14  E-value=0.24  Score=33.80  Aligned_cols=111  Identities=18%  Similarity=0.176  Sum_probs=63.1

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~   69 (153)
                      |.+.||...|..-++...+.. +-+..+|..+           .|.+.|++-.+.  .| +-...|.-=.-+|..|.+++
T Consensus        45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~e  121 (250)
T COG3063          45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPEE  121 (250)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChHH
Confidence            567899999999999988863 2223344433           444444443332  23 22334444444577778888


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      |...|++.....--|...                 .+|.-+.-+..+.|+++.|...|++-.+
T Consensus       122 A~q~F~~Al~~P~Y~~~s-----------------~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063         122 AMQQFERALADPAYGEPS-----------------DTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             HHHHHHHHHhCCCCCCcc-----------------hhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence            888888777654322211                 2555555555555666666665555543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.12  E-value=0.3  Score=36.72  Aligned_cols=140  Identities=18%  Similarity=0.233  Sum_probs=93.3

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~g~~~~   69 (153)
                      .+.|.+++|+..++.+...  .|+..-|..+            +|.+.++++...  .|+ ..-+-.+-++|.+.|++.+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            3568889999999998875  5666666554            788888887776  455 5666777888999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHH-cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC--CCCCCHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH--GKIPSRTLYDTLI  146 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~v~p~~~~~~~li  146 (153)
                      |..+++...... +-|+..|..+-+..+ .|-.  ...-.+--++|...|+++.|...+...++.  .-.|+..=+...|
T Consensus       393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~--~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari  469 (484)
T COG4783         393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNR--AEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARI  469 (484)
T ss_pred             HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence            999999986543 455555554444442 2222  123334455666677777888877777653  2345555555555


Q ss_pred             HHh
Q 047010          147 KKL  149 (153)
Q Consensus       147 ~~~  149 (153)
                      +..
T Consensus       470 ~~~  472 (484)
T COG4783         470 DQL  472 (484)
T ss_pred             HHH
Confidence            544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.03  E-value=0.035  Score=29.55  Aligned_cols=53  Identities=17%  Similarity=0.269  Sum_probs=41.0

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      .+.|++++|...|+...+..  |                       -+...|..+-.++.+.|++++|..+|++..+.
T Consensus         8 ~~~g~~~~A~~~~~~~l~~~--P-----------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    8 YQQGDYDEAIAAFEQALKQD--P-----------------------DNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHCTHHHHHHHHHHHHHCCS--T-----------------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHC--C-----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45677777777777777652  2                       36788888899999999999999999998764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.01  E-value=0.25  Score=32.90  Aligned_cols=94  Identities=6%  Similarity=-0.009  Sum_probs=62.2

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHH-HHHH-HHcCC----------------CC-cHhhHH
Q 047010           48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIH-LHNV-IDIGH----------------IP-RTITFN  108 (153)
Q Consensus        48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~-~~~~-~~~~~----------------~~-~~~~~~  108 (153)
                      +.|...|..+-..|...|++++|...|++..+..- -+...+.. ..-+ ...|.                .| +..++.
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~  148 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM  148 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence            34677888888888888888888888887766531 12222211 1111 12121                23 556888


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010          109 NVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD  143 (153)
Q Consensus       109 ~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~  143 (153)
                      .+-..+...|++++|...++.+.+.. .|+..-+.
T Consensus       149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~  182 (198)
T PRK10370        149 LLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ  182 (198)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence            88889999999999999999997754 45554443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.94  E-value=0.4  Score=34.66  Aligned_cols=99  Identities=12%  Similarity=0.039  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVIDI   98 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~   98 (153)
                      .|+..++++.+.|+. +..-|+.+=-+|.-.+++|-++.-|++....--.|+...-               .+..+.+.-
T Consensus       342 ~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl  420 (478)
T KOG1129|consen  342 MALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL  420 (478)
T ss_pred             HHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence            677777777777763 4455666666666777777777777776665444443321               333333322


Q ss_pred             ---CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           99 ---GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        99 ---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                         .-.-+...+|.+----.+.|++++|..++...+..
T Consensus       421 aL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  421 ALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence               22234467888888888999999999999887654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=0.47  Score=33.15  Aligned_cols=122  Identities=18%  Similarity=0.169  Sum_probs=67.6

Q ss_pred             ccccCChHHHHHHHHHHHHCC-CCCChhhchHH----HHHHHHHHHHHcCCCccHHHHHHHHHHH----HhcCCHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNG-YHPNVTTYTIL----EAYEMLMNVKNDGLKPDVYTYTAVMDGF----CKVGRSNEVME   72 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l----~a~~~~~~m~~~g~~~~~~t~~~ll~~~----~~~g~~~~a~~   72 (153)
                      |+..+++++|++..+..-.-. .-.++.....+    .|...+++|.+.   -+..|.+-|-+++    ...+.+..|.-
T Consensus       118 ~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfy  194 (299)
T KOG3081|consen  118 YMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFY  194 (299)
T ss_pred             hhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHH
Confidence            455667777766655511100 00111111122    344444455543   2445555443333    33456777788


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047010           73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI  146 (153)
Q Consensus        73 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li  146 (153)
                      +|++|-. ..+|+                  .-+.|-...++...|++++|..+++...++. .-+..+...+|
T Consensus       195 ifeE~s~-k~~~T------------------~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nli  248 (299)
T KOG3081|consen  195 IFEELSE-KTPPT------------------PLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLI  248 (299)
T ss_pred             HHHHHhc-ccCCC------------------hHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHH
Confidence            8887743 23343                  4488888889999999999999999887653 12344444443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.61  E-value=0.46  Score=33.49  Aligned_cols=78  Identities=21%  Similarity=0.221  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH-
Q 047010           53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY-  131 (153)
Q Consensus        53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-  131 (153)
                      ++..++..+...|+.+.+.+.++++....                   .-|...|..++.+|.+.|+...|.+.++.+. 
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-------------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-------------------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            45567777777777788877777776542                   1355699999999999999999999999886 


Q ss_pred             ----HCCCCCCHHHHHHHHHHh
Q 047010          132 ----EHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       132 ----~~~v~p~~~~~~~li~~~  149 (153)
                          +.||.|...+.....+..
T Consensus       216 ~~~edlgi~P~~~~~~~y~~~~  237 (280)
T COG3629         216 TLAEELGIDPAPELRALYEEIL  237 (280)
T ss_pred             HhhhhcCCCccHHHHHHHHHHh
Confidence                469999988877766653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.58  E-value=0.33  Score=32.35  Aligned_cols=76  Identities=13%  Similarity=0.113  Sum_probs=43.0

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCC-hhhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS   67 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~   67 (153)
                      ...|++++|...|+...+..  |+ ...+..+              ++.+++++..+... -+...+..+-..+.+.|++
T Consensus        84 ~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~  160 (198)
T PRK10370         84 LWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADY  160 (198)
T ss_pred             HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCH
Confidence            35566777777777666643  32 2222211              34455555544422 2556666666667777777


Q ss_pred             HHHHHHHHHHHHcC
Q 047010           68 NEVMELLNEAIERG   81 (153)
Q Consensus        68 ~~a~~l~~~m~~~~   81 (153)
                      ++|...|+++.+..
T Consensus       161 ~~Ai~~~~~aL~l~  174 (198)
T PRK10370        161 AQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHHHhhC
Confidence            77777777776543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.53  E-value=1.2  Score=38.14  Aligned_cols=37  Identities=19%  Similarity=0.017  Sum_probs=32.3

Q ss_pred             cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010          103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR  139 (153)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~  139 (153)
                      -+..|++.|+.-.++|+.+.+..+|++....++.|-.
T Consensus      1633 RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1633 RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred             chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence            3468999999999999999999999999988877643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.50  E-value=0.56  Score=33.20  Aligned_cols=93  Identities=16%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|+..|.+-... .+.|.+=|..=-.+|++.|+.+.|.+=.+.-++-  .|.                 ...+|..|=.+
T Consensus        99 eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~-----------------yskay~RLG~A  158 (304)
T KOG0553|consen   99 EAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPH-----------------YSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChH-----------------HHHHHHHHHHH
Confidence            444444444332 1246666777778899999999998877765542  232                 23689999999


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK  148 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~  148 (153)
                      |...|++++|.+.|++..+  +.|+..+|-.=++.
T Consensus       159 ~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALE--LDPDNESYKSNLKI  191 (304)
T ss_pred             HHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence            9999999999999988766  56888887665544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.47  E-value=0.037  Score=31.25  Aligned_cols=41  Identities=20%  Similarity=0.205  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE   76 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~   76 (153)
                      .|..++++ .+.+. .+....-.+-.+|.+.|++++|.++|++
T Consensus        43 ~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   43 EAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            55556655 21111 1233444557889999999999999875

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=95.30  E-value=0.093  Score=30.98  Aligned_cols=57  Identities=14%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010           90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK  147 (153)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~  147 (153)
                      ..+..+......|+..+..+.+.+|.+.+++..|.++|+..+.+- .+....|..+++
T Consensus        31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq   87 (108)
T PF02284_consen   31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred             HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence            344455566667778899999999999999999999999997542 233337776665

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=95.29  E-value=0.19  Score=29.39  Aligned_cols=56  Identities=16%  Similarity=0.302  Sum_probs=42.2

Q ss_pred             HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 047010           90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE-HGKIPSRTLYDTLIK  147 (153)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~v~p~~~~~~~li~  147 (153)
                      ..+..+......|+..+..+.+.+|.+.+++..|.++|+..+. .|.  +...|..+++
T Consensus        28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            3444455556667777999999999999999999999998874 342  4556766665

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.28  E-value=0.55  Score=31.76  Aligned_cols=145  Identities=15%  Similarity=-0.010  Sum_probs=74.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCC-hh---hchHH-----------HHHHHHHHHHHcCCCccH--HHHHHHHHHHHhc
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPN-VT---TYTIL-----------EAYEMLMNVKNDGLKPDV--YTYTAVMDGFCKV   64 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~---~~~~l-----------~a~~~~~~m~~~g~~~~~--~t~~~ll~~~~~~   64 (153)
                      +.+.|++++|...|+...+..  |+ ..   .+..+           .|...++++.+.......  ..+..+-.++.+.
T Consensus        43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~  120 (235)
T TIGR03302        43 ALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ  120 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence            346788999999999887753  33 21   22111           778888877765432222  2344444444443


Q ss_pred             --------CCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-
Q 047010           65 --------GRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-  134 (153)
Q Consensus        65 --------g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-  134 (153)
                              |+.++|.+.|+...+..  |+.. ....+..+........ ...-.+-..+.+.|++.+|...+....+.. 
T Consensus       121 ~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  197 (235)
T TIGR03302       121 IDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLA-GKELYVARFYLKRGAYVAAINRFETVVENYP  197 (235)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence                    67888899988887653  2211 1111111100000000 011134445667777777777777765431 


Q ss_pred             -CCCCHHHHHHHHHHhhc
Q 047010          135 -KIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       135 -v~p~~~~~~~li~~~~~  151 (153)
                       -......+..+..++.+
T Consensus       198 ~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       198 DTPATEEALARLVEAYLK  215 (235)
T ss_pred             CCcchHHHHHHHHHHHHH
Confidence             11123445555555443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.20  E-value=0.78  Score=33.02  Aligned_cols=82  Identities=15%  Similarity=0.062  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQ  112 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  112 (153)
                      +|.+.+++..+.. +.+...+..+-..|...|++++|...+++.....- .|+.                ....|-.+..
T Consensus       132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~----------------~~~~~~~la~  194 (355)
T cd05804         132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML----------------RGHNWWHLAL  194 (355)
T ss_pred             HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch----------------hHHHHHHHHH
Confidence            6777887777764 33566788888899999999999999998766421 1221                1235667888


Q ss_pred             HHHccCcHHHHHHHHHHHHH
Q 047010          113 ALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       113 ~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .+...|++++|..++++...
T Consensus       195 ~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         195 FYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHCCCHHHHHHHHHHHhc
Confidence            89999999999999999854

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.15  E-value=0.76  Score=32.59  Aligned_cols=38  Identities=16%  Similarity=0.111  Sum_probs=28.5

Q ss_pred             hhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010          105 ITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD  143 (153)
Q Consensus       105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~  143 (153)
                      ..|.-+-..+.+.|++++|...|++..+.++ |+..-+.
T Consensus       237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~  274 (296)
T PRK11189        237 ETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHR  274 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHH
Confidence            4677777888899999999999998887653 4544444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.14  E-value=0.19  Score=40.76  Aligned_cols=110  Identities=13%  Similarity=0.136  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHH-----HH------HHHHHHH-----
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVV-----TL------IHLHNVI-----   96 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~-----~~------~~~~~~~-----   96 (153)
                      .|+++|.+..+.. +.|...=|-+=-+++..|++.+|.++|.+.+.... -+|..     ++      ....+|.     
T Consensus       630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk  708 (1018)
T KOG2002|consen  630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK  708 (1018)
T ss_pred             HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777666542 34666666677777888888888888888877654 22211     01      1111221     


Q ss_pred             HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010           97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT  144 (153)
Q Consensus        97 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~  144 (153)
                      ...-.-+..+.+.|-.++-.+|.+.+|.+.+.........-...-|+.
T Consensus       709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~  756 (1018)
T KOG2002|consen  709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL  756 (1018)
T ss_pred             HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence            122334555666777777777777777777666555443333444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.08  E-value=0.98  Score=34.41  Aligned_cols=97  Identities=16%  Similarity=0.143  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHH--------------HHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTL--------------IHLHN   94 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~~~~~~~~~--------------~~~~~   94 (153)
                      ++...|++.+.+ ++.-...|+-.-..+...++++.|.+.|+...+.     ++..+...+              +...+
T Consensus       446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~  524 (606)
T KOG0547|consen  446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN  524 (606)
T ss_pred             HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence            555666666655 3445577888888888899999999999886553     111222221              33344


Q ss_pred             HHHcCCCCcH---hhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           95 VIDIGHIPRT---ITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        95 ~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ++..-++.|.   ..|.+|-..-.+.|+.++|.++|++-.
T Consensus       525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4554444444   579999999999999999999998754

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=94.89  E-value=1.3  Score=34.11  Aligned_cols=41  Identities=32%  Similarity=0.371  Sum_probs=27.9

Q ss_pred             CcHhhH--HHHHHHHHccCcHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 047010          102 PRTITF--NNVIQALCGVGKIDKALLLLFLMYEHGKIPS-RTLYDT  144 (153)
Q Consensus       102 ~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~-~~~~~~  144 (153)
                      |....|  .-+-..|-+.|++++|+.+.+...++.  |+ ...|.+
T Consensus       190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~  233 (517)
T PF12569_consen  190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMT  233 (517)
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHH
Confidence            444445  444666778999999999999888764  65 334433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=94.89  E-value=0.74  Score=31.14  Aligned_cols=112  Identities=20%  Similarity=0.217  Sum_probs=75.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChh----hchHH-------------------HHHHHHHHHHHcCCCccHHHH----
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVT----TYTIL-------------------EAYEMLMNVKNDGLKPDVYTY----   54 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l-------------------~a~~~~~~m~~~g~~~~~~t~----   54 (153)
                      |.+.|++++|...++.+.+..  |+..    .+..+                   .|.+.++.+....+. +...+    
T Consensus        80 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~  156 (235)
T TIGR03302        80 YYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKK  156 (235)
T ss_pred             HHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHH
Confidence            456789999999999998753  3221    12111                   455666665544221 11111    


Q ss_pred             -------------HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcH
Q 047010           55 -------------TAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKI  120 (153)
Q Consensus        55 -------------~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  120 (153)
                                   -.+-..|.+.|++++|...++...+..- .|.                 ....+..+..++.+.|++
T Consensus       157 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~a~~~l~~~~~~lg~~  219 (235)
T TIGR03302       157 RMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA-----------------TEEALARLVEAYLKLGLK  219 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc-----------------hHHHHHHHHHHHHHcCCH
Confidence                         1344567888999999999999876521 121                 234888999999999999


Q ss_pred             HHHHHHHHHHHHC
Q 047010          121 DKALLLLFLMYEH  133 (153)
Q Consensus       121 ~~a~~~~~~m~~~  133 (153)
                      ++|..+++.+...
T Consensus       220 ~~A~~~~~~l~~~  232 (235)
T TIGR03302       220 DLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=94.83  E-value=0.86  Score=31.60  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=24.0

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010           48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus        48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      ++|...|+.+=-+|.+.|++++|..-|.+..+
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~  162 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALE  162 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence            46777777777777788888777777777655

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.81  E-value=0.56  Score=29.37  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 047010            8 FFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPN   85 (153)
Q Consensus         8 ~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~   85 (153)
                      ..+|..+|..+...-     ..-+.-.+...++.+.......  .....=.+-..+...|++++|...|+........|+
T Consensus         8 ~~~a~~~y~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~   82 (145)
T PF09976_consen    8 AEQASALYEQALQAL-----QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE   82 (145)
T ss_pred             HHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH
Confidence            345556666655421     0111113445566666653222  122233344778899999999999999988763232


Q ss_pred             HHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           86 VVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      ..                ....-.+...+...|++++|+..++....
T Consensus        83 l~----------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~  113 (145)
T PF09976_consen   83 LK----------------PLARLRLARILLQQGQYDEALATLQQIPD  113 (145)
T ss_pred             HH----------------HHHHHHHHHHHHHcCCHHHHHHHHHhccC
Confidence            22                22444567788899999999999977433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=94.75  E-value=0.67  Score=29.94  Aligned_cols=68  Identities=24%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      ....|..+-..+.+.|++++|...|++..+..-.+..                ....+..+...+.+.|++++|...+.+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND----------------RSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch----------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3345677777788888999998888887764322210                123677777888888888888888887


Q ss_pred             HHHC
Q 047010          130 MYEH  133 (153)
Q Consensus       130 m~~~  133 (153)
                      ..+.
T Consensus        98 al~~  101 (172)
T PRK02603         98 ALEL  101 (172)
T ss_pred             HHHh
Confidence            7653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=94.73  E-value=0.66  Score=29.78  Aligned_cols=71  Identities=7%  Similarity=-0.030  Sum_probs=51.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +..-|-.|=-++-..|++++|.+.|.......  ||                 |...+--+-.++...|+.+.|..-|+.
T Consensus        68 ~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~d-----------------dp~~~~~ag~c~L~lG~~~~A~~aF~~  128 (157)
T PRK15363         68 SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--ID-----------------APQAPWAAAECYLACDNVCYAIKALKA  128 (157)
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----------------CchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45556667777778889999999998876654  22                 334677777888889999999999987


Q ss_pred             HHH-CCCCCCH
Q 047010          130 MYE-HGKIPSR  139 (153)
Q Consensus       130 m~~-~~v~p~~  139 (153)
                      ... .+-.|..
T Consensus       129 Ai~~~~~~~~~  139 (157)
T PRK15363        129 VVRICGEVSEH  139 (157)
T ss_pred             HHHHhccChhH
Confidence            654 3444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.73  E-value=0.33  Score=26.26  Aligned_cols=55  Identities=25%  Similarity=0.396  Sum_probs=43.6

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      |.+.+++++|..+++.+.+.+  |                       .+...|...-.++.+.|++++|.+.|+...+.+
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~--p-----------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELD--P-----------------------DDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhC--c-----------------------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            456788888888888887752  2                       366777778888999999999999999988653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.69  E-value=0.72  Score=37.68  Aligned_cols=72  Identities=10%  Similarity=0.146  Sum_probs=39.7

Q ss_pred             CChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 047010            6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL   74 (153)
Q Consensus         6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~   74 (153)
                      +..++|..+|....+.. +-|.+.-|-+           .|..+|.+..+... -+.-+|-.+-.+|...|++-.|.++|
T Consensus       626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmY  703 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHH
Confidence            34556666666655542 3333333333           66666666665532 12335666666666677777777776


Q ss_pred             HHHHH
Q 047010           75 NEAIE   79 (153)
Q Consensus        75 ~~m~~   79 (153)
                      +.-.+
T Consensus       704 e~~lk  708 (1018)
T KOG2002|consen  704 ENCLK  708 (1018)
T ss_pred             HHHHH
Confidence            65444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.68  E-value=0.13  Score=24.02  Aligned_cols=26  Identities=12%  Similarity=0.229  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010           53 TYTAVMDGFCKVGRSNEVMELLNEAI   78 (153)
Q Consensus        53 t~~~ll~~~~~~g~~~~a~~l~~~m~   78 (153)
                      +|+.|=..|.+.|++++|.++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47888899999999999999999954

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.55  E-value=0.38  Score=33.87  Aligned_cols=32  Identities=13%  Similarity=0.054  Sum_probs=25.1

Q ss_pred             CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010          102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+...|..-++-+.+.++.+.|..+|++....
T Consensus        68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~   99 (280)
T PF05843_consen   68 SDPDFWLEYLDFLIKLNDINNARALFERAISS   99 (280)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence            34567888889999999999999999988654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.51  E-value=0.5  Score=29.15  Aligned_cols=78  Identities=12%  Similarity=0.042  Sum_probs=50.8

Q ss_pred             CccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 047010            1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-   79 (153)
Q Consensus         1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~-   79 (153)
                      |+++.|+.+....+.+..-  |+.++...-..-       --......|+..+..+++.+|+..|++..|.++.+...+ 
T Consensus        11 al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~-------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~   81 (126)
T PF12921_consen   11 ALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD-------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK   81 (126)
T ss_pred             HHhhcCCHHHHHHHHHHhc--CCCCCCccccCc-------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            3567777777777665433  333222100000       112234579999999999999999999999999998755 


Q ss_pred             cCCCchHH
Q 047010           80 RGVTPNVV   87 (153)
Q Consensus        80 ~~~~~~~~   87 (153)
                      -+++.+..
T Consensus        82 Y~I~i~~~   89 (126)
T PF12921_consen   82 YPIPIPKE   89 (126)
T ss_pred             cCCCCCHH
Confidence            45555544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.49  E-value=1.3  Score=31.96  Aligned_cols=108  Identities=15%  Similarity=0.179  Sum_probs=70.1

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhch---HH-----------HHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYT---IL-----------EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSN   68 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~l-----------~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~g~~~   68 (153)
                      ..|++++|..+++...+.. +.+...+.   ..           .+.+.+..  .....|+ ......+-..+...|+++
T Consensus        55 ~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~  131 (355)
T cd05804          55 IAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYD  131 (355)
T ss_pred             HcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence            4688889998888877753 22332322   11           12222222  1112233 344455666788899999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      +|.+.+++..+..  |+                 +...+..+-..+...|++++|..++.+..+.
T Consensus       132 ~A~~~~~~al~~~--p~-----------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         132 RAEEAARRALELN--PD-----------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HHHHHHHHHHhhC--CC-----------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            9999999987753  32                 2347788888899999999999999987654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=94.42  E-value=0.56  Score=27.66  Aligned_cols=66  Identities=12%  Similarity=0.094  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      .++-.....+.+.|++++|.+.|....+..  |+..              .....+..+...+.+.|+++.|...|+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   66 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKST--------------YAPNAHYWLGEAYYAQGKYADAAKAFLAVV   66 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcc--------------ccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            355667778889999999999999997643  2110              112356668888999999999999999987


Q ss_pred             HC
Q 047010          132 EH  133 (153)
Q Consensus       132 ~~  133 (153)
                      ..
T Consensus        67 ~~   68 (119)
T TIGR02795        67 KK   68 (119)
T ss_pred             HH
Confidence            64

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.26  E-value=0.56  Score=34.34  Aligned_cols=64  Identities=3%  Similarity=0.018  Sum_probs=37.9

Q ss_pred             cHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh-hHHHHHHHHHccCcHHHHHHHH
Q 047010           50 DVYTYTAVM-DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI-TFNNVIQALCGVGKIDKALLLL  127 (153)
Q Consensus        50 ~~~t~~~ll-~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~  127 (153)
                      |..+|.+++ ++|.+++.++.|++++-++--   +.                  +.. ....+...|-+++++--|...|
T Consensus       426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~------------------e~fsLLqlIAn~CYk~~eFyyaaKAF  484 (557)
T KOG3785|consen  426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PS------------------ERFSLLQLIANDCYKANEFYYAAKAF  484 (557)
T ss_pred             hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---ch------------------hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455554433 456666666666666544421   11                  112 3444555677888888888888


Q ss_pred             HHHHHCC
Q 047010          128 FLMYEHG  134 (153)
Q Consensus       128 ~~m~~~~  134 (153)
                      +.+....
T Consensus       485 d~lE~lD  491 (557)
T KOG3785|consen  485 DELEILD  491 (557)
T ss_pred             hHHHccC
Confidence            8877654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.17  E-value=0.91  Score=29.13  Aligned_cols=69  Identities=22%  Similarity=0.210  Sum_probs=52.6

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .....|..+...+...|++++|+..|++.......+..                ...+|..+-..+.+.|++++|...++
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~----------------~~~~~~~lg~~~~~~g~~~eA~~~~~   96 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD----------------RSYILYNIGLIHTSNGEHTKALEYYF   96 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh----------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34566788888888899999999999998765322110                12378888889999999999999998


Q ss_pred             HHHHC
Q 047010          129 LMYEH  133 (153)
Q Consensus       129 ~m~~~  133 (153)
                      ...+.
T Consensus        97 ~Al~~  101 (168)
T CHL00033         97 QALER  101 (168)
T ss_pred             HHHHh
Confidence            88654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=94.10  E-value=1.3  Score=30.94  Aligned_cols=89  Identities=10%  Similarity=0.031  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI  111 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  111 (153)
                      +|...|+.+...-+...  ...+--+-..|...|++++|...|+...+.-  |+..              .....+-.+.
T Consensus       161 ~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~--------------~~~dAl~klg  224 (263)
T PRK10803        161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSP--------------KAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCc--------------chhHHHHHHH
Confidence            44445555554422111  2456667778889999999999999987642  1110              0112444455


Q ss_pred             HHHHccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010          112 QALCGVGKIDKALLLLFLMYEHGKIPSRT  140 (153)
Q Consensus       112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~~  140 (153)
                      ..+-..|+.++|..+|+...+.  .|+..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~--yP~s~  251 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKK--YPGTD  251 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence            5677899999999999988764  35443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=93.99  E-value=2.8  Score=34.13  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-HH--------HHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EA--------YEMLMNVKNDGL-KPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~a--------~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      |++ |++++|.+++.+..+.. +.+...|-.| ..        -.+...+..+.. +.|.--|..+-....+.|+++.|.
T Consensus       150 far-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  150 FAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            344 99999999999988864 3444555555 11        112223333323 346688999999999999999999


Q ss_pred             HHHHHHHHcC
Q 047010           72 ELLNEAIERG   81 (153)
Q Consensus        72 ~l~~~m~~~~   81 (153)
                      -.|.+..+..
T Consensus       228 ~cy~rAI~~~  237 (895)
T KOG2076|consen  228 YCYSRAIQAN  237 (895)
T ss_pred             HHHHHHHhcC
Confidence            9999987764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.98  E-value=2  Score=32.40  Aligned_cols=68  Identities=15%  Similarity=0.060  Sum_probs=54.0

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHHccCcHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRT-ITFNNVIQALCGVGKIDKALLLL  127 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~  127 (153)
                      .+...|+.+=.+|.+.|++++|...|++-.+.  .|+..               .. .+|..+-.+|.+.|++++|...+
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~a---------------eA~~A~yNLAcaya~LGr~dEAla~L  135 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPD---------------EAQAAYYNKACCHAYREEGKKAADCL  135 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCch---------------HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35578999999999999999999999997664  23311               01 35889999999999999999999


Q ss_pred             HHHHHC
Q 047010          128 FLMYEH  133 (153)
Q Consensus       128 ~~m~~~  133 (153)
                      ++..+.
T Consensus       136 rrALel  141 (453)
T PLN03098        136 RTALRD  141 (453)
T ss_pred             HHHHHh
Confidence            988764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.98  E-value=0.19  Score=23.39  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      +|+.+-..|.+.|++++|..++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47788999999999999999999854

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.80  E-value=3.1  Score=33.96  Aligned_cols=121  Identities=17%  Similarity=0.212  Sum_probs=71.4

Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 047010            5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME   72 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~   72 (153)
                      .+++++|..-...+.++  -||.-..-.+            +|+.+++....-+.. |..|..++-.+|...|+.++|..
T Consensus        22 ~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence            45666777776666665  2544333333            556666655554433 77888888888888888888888


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010           73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus        73 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~  149 (153)
                      ++++....  -                  |+..-...+.-+|.+.+.+.+-..+--+|-+ .+.-+...|.++++..
T Consensus        99 ~Ye~~~~~--~------------------P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sli  154 (932)
T KOG2053|consen   99 LYERANQK--Y------------------PSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLI  154 (932)
T ss_pred             HHHHHHhh--C------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHH
Confidence            88876543  2                  3334555666677777776654444444432 2233444444555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.76  E-value=0.28  Score=23.15  Aligned_cols=29  Identities=31%  Similarity=0.524  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      ..+++.|-..|...|++++|++++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            35789999999999999999999998765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=93.74  E-value=1.9  Score=31.23  Aligned_cols=127  Identities=16%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             CChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010            6 NDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL   73 (153)
Q Consensus         6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l   73 (153)
                      .++++|..++....+.+  |+.+--+.+            .|.+.+....+.+..--..+-..|..+|.+.|+.++.+..
T Consensus       194 ~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f  271 (389)
T COG2956         194 SDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF  271 (389)
T ss_pred             hhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45566666666655542  333322222            7778888888877666778889999999999999999999


Q ss_pred             HHHHHHcCCCchHH--HHHHHHH----------H-HHcCCCCcHhhHHHHHHHHHcc---CcHHHHHHHHHHHHHCC
Q 047010           74 LNEAIERGVTPNVV--TLIHLHN----------V-IDIGHIPRTITFNNVIQALCGV---GKIDKALLLLFLMYEHG  134 (153)
Q Consensus        74 ~~~m~~~~~~~~~~--~~~~~~~----------~-~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~  134 (153)
                      +..+.+....++..  .++++..          + ..-.-+|+...+..+|+.-..-   |..++-+.+++.|....
T Consensus       272 L~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~  348 (389)
T COG2956         272 LRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ  348 (389)
T ss_pred             HHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence            99998865544444  3322211          1 1234579999999999876533   34677778888886543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.69  E-value=0.95  Score=27.66  Aligned_cols=80  Identities=23%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ..+-.+-+.+...|++++|+.+|++....-  |+...            .....++  +--++...|+.++|...+-...
T Consensus        39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~------------~~~l~~f--~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   39 RALIQLASTLRNLGRYDEALALLEEALEEF--PDDEL------------NAALRVF--LALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccc------------cHHHHHH--HHHHHHHCCCHHHHHHHHHHHH
Confidence            345556777889999999999999887642  22000            0011222  2236667899999999887654


Q ss_pred             HCCCCCCHHHHHHHHHHhhc
Q 047010          132 EHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       132 ~~~v~p~~~~~~~li~~~~~  151 (153)
                      .    ++...|.--|..|..
T Consensus       103 a----~~~~~y~ra~~~ya~  118 (120)
T PF12688_consen  103 A----ETLPRYRRAIRFYAD  118 (120)
T ss_pred             H----HHHHHHHHHHHHHHh
Confidence            3    344477777776654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.61  E-value=2.7  Score=32.55  Aligned_cols=65  Identities=12%  Similarity=0.012  Sum_probs=52.1

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .+...|.++--.....|++++|...+++.....                    |+...|..+-..+...|+.++|.+.++
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------------------ps~~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------------------MSWLNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            455777777666667789999999999987764                    334489999999999999999999999


Q ss_pred             HHHHC
Q 047010          129 LMYEH  133 (153)
Q Consensus       129 ~m~~~  133 (153)
                      +....
T Consensus       478 ~A~~L  482 (517)
T PRK10153        478 TAFNL  482 (517)
T ss_pred             HHHhc
Confidence            87654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.54  E-value=2  Score=30.88  Aligned_cols=124  Identities=19%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             ccCChHHHHHHHHHHHH-CCCCCChhhchHH----------HHHHHHHHHHHcCCC-------------ccHH-------
Q 047010            4 NKNDFFEARKVIDYMFD-NGYHPNVTTYTIL----------EAYEMLMNVKNDGLK-------------PDVY-------   52 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~l----------~a~~~~~~m~~~g~~-------------~~~~-------   52 (153)
                      +.|++++|.+-|....+ +|..|-. .|+..          .|+....++.++|++             ||..       
T Consensus       156 kegqyEaAvqkFqaAlqvsGyqpll-AYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~  234 (459)
T KOG4340|consen  156 KEGQYEAAVQKFQAALQVSGYQPLL-AYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV  234 (459)
T ss_pred             ccccHHHHHHHHHHHHhhcCCCchh-HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence            56777777777776665 3555543 33322          677777777776652             2321       


Q ss_pred             -HHHHHHHH-------HHhcCCHHHHHHHHHHHHH-cCCCchHHHH----------------HHHHHHHHcCCCCcHhhH
Q 047010           53 -TYTAVMDG-------FCKVGRSNEVMELLNEAIE-RGVTPNVVTL----------------IHLHNVIDIGHIPRTITF  107 (153)
Q Consensus        53 -t~~~ll~~-------~~~~g~~~~a~~l~~~m~~-~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~  107 (153)
                       .-+.++.+       +.+.|+++.|.+-+-.|.- .....|++|+                .-+..+..... -...||
T Consensus       235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETF  313 (459)
T KOG4340|consen  235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETF  313 (459)
T ss_pred             HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHH
Confidence             12333333       4567777777777666632 2233444444                22222333322 345688


Q ss_pred             HHHHHHHHccCcHHHHHHHHHH
Q 047010          108 NNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus       108 ~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      ..++--||+..-++.|.+++-+
T Consensus       314 ANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  314 ANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHHHhhhHHHhHHHHHHhh
Confidence            8888889999888888887754

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.48  E-value=0.27  Score=24.00  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           53 TYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      +|..+-..|.+.|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5777889999999999999999999886

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=93.45  E-value=3.8  Score=33.88  Aligned_cols=96  Identities=10%  Similarity=0.112  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-HHHHHHHHc-CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-IHLHNVIDI-GHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      .+.-.+.-|...+++.++++++.++..... -+...+ .+.+.+... +...-+.++--+-..|-..++|+++..+|+.+
T Consensus       171 m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i  249 (906)
T PRK14720        171 YLKKAIYRFIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI  249 (906)
T ss_pred             HHHHHHHHHHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            334444445555555555565555554321 111121 333444432 55666778888889999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHhh
Q 047010          131 YEHGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       131 ~~~~v~p~~~~~~~li~~~~  150 (153)
                      .+..- -|.....-++..|.
T Consensus       250 L~~~~-~n~~a~~~l~~~y~  268 (906)
T PRK14720        250 LEHDN-KNNKAREELIRFYK  268 (906)
T ss_pred             HhcCC-cchhhHHHHHHHHH
Confidence            87642 24555555555553

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=93.40  E-value=1.3  Score=35.24  Aligned_cols=61  Identities=11%  Similarity=0.248  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ..||.+-.+|.+.|+-.+|...+++-.+.+..                   +...|.--+....+.|.+++|+..+.++.
T Consensus       554 eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-------------------~w~iWENymlvsvdvge~eda~~A~~rll  614 (777)
T KOG1128|consen  554 EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-------------------HWQIWENYMLVSVDVGEFEDAIKAYHRLL  614 (777)
T ss_pred             hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-------------------CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence            44555555555555555555555555554422                   23356666667777777887777777664

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=93.32  E-value=3  Score=32.30  Aligned_cols=124  Identities=11%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHC-CCCCChhhchHH----------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047010            8 FFEARKVIDYMFDN-GYHPNVTTYTIL----------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEVMELLN   75 (153)
Q Consensus         8 ~~~a~~~~~~m~~~-~~~~~~~~~~~l----------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~a~~l~~   75 (153)
                      .+.....++.+... .+.|+..-.+.+          .|-.+|.+..+.+..+ +++.++++|.-||. ++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence            45566666666554 456665444444          6667777777777776 78888999988875 68888999998


Q ss_pred             HHHH-cCCCchHHH-H--------------HHHHHHHHcCCCC--cHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           76 EAIE-RGVTPNVVT-L--------------IHLHNVIDIGHIP--RTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        76 ~m~~-~~~~~~~~~-~--------------~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .-.+ .|-.|-... |              .++.+.+..+..|  ....|..+|+-=...|+...+..+-+++..
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            7544 343333221 1              3444455554444  347899999999999999999999887754

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=93.30  E-value=1.9  Score=29.95  Aligned_cols=66  Identities=20%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .|....+.......+.|++.+|...|++...- -++                  |..+|+.+-.+|-+.|++++|..-+.
T Consensus        98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~------------------d~~~~~~lgaaldq~Gr~~~Ar~ay~  158 (257)
T COG5010          98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APT------------------DWEAWNLLGAALDQLGRFDEARRAYR  158 (257)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCC------------------ChhhhhHHHHHHHHccChhHHHHHHH
Confidence            34456667888899999999999999998643 234                  44588888888888888888888887


Q ss_pred             HHHHC
Q 047010          129 LMYEH  133 (153)
Q Consensus       129 ~m~~~  133 (153)
                      +..+.
T Consensus       159 qAl~L  163 (257)
T COG5010         159 QALEL  163 (257)
T ss_pred             HHHHh
Confidence            77654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=93.29  E-value=3.6  Score=33.08  Aligned_cols=80  Identities=8%  Similarity=0.040  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ  112 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  112 (153)
                      +|..+++...+.  .|| ......+...+.+.+++++|+..+++....  .|+                 +......+-.
T Consensus       104 ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~-----------------~~~~~~~~a~  162 (694)
T PRK15179        104 EGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSS-----------------SAREILLEAK  162 (694)
T ss_pred             HHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCC-----------------CHHHHHHHHH
Confidence            555555555554  343 345566667777777777777777776654  233                 2246777888


Q ss_pred             HHHccCcHHHHHHHHHHHHHCC
Q 047010          113 ALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus       113 ~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      ++.+.|++++|..+|++....+
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~  184 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQH  184 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcC
Confidence            8999999999999999998744

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=93.19  E-value=1.4  Score=27.96  Aligned_cols=99  Identities=10%  Similarity=0.098  Sum_probs=71.6

Q ss_pred             HHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010           40 MNVKNDGLKPDV--YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV  117 (153)
Q Consensus        40 ~~m~~~g~~~~~--~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  117 (153)
                      ..|++.+..++.  ...|++++=....+++.....+++.+..-  .++..           .-..+...|.+++.+.++.
T Consensus        26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l--~~~~~-----------~~~~~~ssf~~if~SlsnS   92 (145)
T PF13762_consen   26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFL--NTDNI-----------IGWLDNSSFHIIFKSLSNS   92 (145)
T ss_pred             HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHh--hHHHH-----------hhhcccchHHHHHHHHccC
Confidence            334555555555  44688888888888888888888887321  11111           0123456899999999888


Q ss_pred             Cc-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          118 GK-IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       118 g~-~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      .- ---+..+|+-|++.+.+++..-|..+|+++.+
T Consensus        93 sSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~  127 (145)
T PF13762_consen   93 SSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR  127 (145)
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence            76 44577788999888899999999999999865

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=93.16  E-value=4  Score=33.31  Aligned_cols=143  Identities=14%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhc------hHH----------HHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcCC
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTY------TIL----------EAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGR   66 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~------~~l----------~a~~~~~~m~~-~g~~~~~~t~~~ll~~~~~~g~   66 (153)
                      +.|+...|..-|.++.... +|...-+      ..+          .|++.+..-.. .+-.-+..+++++...|.+...
T Consensus       253 ~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q  331 (895)
T KOG2076|consen  253 KTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ  331 (895)
T ss_pred             HhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH
Confidence            4566777777777666642 1211111      000          33333333322 2233455678888999999999


Q ss_pred             HHHHHHHHHHHHHcCCCchHHHH-------------------------------------------HHHHHHHHcCCC--
Q 047010           67 SNEVMELLNEAIERGVTPNVVTL-------------------------------------------IHLHNVIDIGHI--  101 (153)
Q Consensus        67 ~~~a~~l~~~m~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~--  101 (153)
                      ++.|......+......+|..-+                                           .+++........  
T Consensus       332 ~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~  411 (895)
T KOG2076|consen  332 SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS  411 (895)
T ss_pred             HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence            99999988888774444444433                                           233334444433  


Q ss_pred             CcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010          102 PRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK  147 (153)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~  147 (153)
                      -+...|.-+..+|-..|++++|+.+|..+...-..-+...|--+-.
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~  457 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR  457 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence            3456788889999999999999999999877654445444444433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=93.15  E-value=0.24  Score=27.24  Aligned_cols=57  Identities=19%  Similarity=0.334  Sum_probs=38.7

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCC-Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGL-KPD-VYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~-~~~-~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      .+.|++++|...|+...+                 +.+.+   |. .|+ ..+++.+-.+|...|++++|++.+++-.+
T Consensus        16 ~~~~~~~~A~~~~~~al~-----------------~~~~~---~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   16 RELGRYDEALDYYEKALD-----------------IEEQL---GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHTT-HHHHHHHHHHHHH-----------------HHHHT---TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH-----------------HHHHH---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455677777777766654                 21111   11 133 57899999999999999999999998643

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=93.07  E-value=3.3  Score=32.05  Aligned_cols=84  Identities=19%  Similarity=0.228  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHH-cC-CCCcHhhHHHHHHHHH
Q 047010           53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVID-IG-HIPRTITFNNVIQALC  115 (153)
Q Consensus        53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~-~~-~~~~~~~~~~li~~~~  115 (153)
                      ++.-+-.-|.+.|+.++|++++++..+.  .|+..-+               ..+..|.. .. -..|-..=+-....+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            4466677799999999999999988776  4554322               11122221 11 1234455566667777


Q ss_pred             ccCcHHHHHHHHHHHHHCCCCCC
Q 047010          116 GVGKIDKALLLLFLMYEHGKIPS  138 (153)
Q Consensus       116 ~~g~~~~a~~~~~~m~~~~v~p~  138 (153)
                      ++|++++|..++......+..|-
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~~~~~  296 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTREDVDPL  296 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCCCCcc
Confidence            88888888888887766555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=93.05  E-value=2.2  Score=31.22  Aligned_cols=73  Identities=15%  Similarity=0.039  Sum_probs=53.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010           59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS  138 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~  138 (153)
                      ..+...|++++|+++|++..+..  |+                 +...|..+-.+|.+.|++++|...+++..+.. ..+
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~-----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~   69 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD--PN-----------------NAELYADRAQANIKLGNFTEAVADANKAIELD-PSL   69 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence            45677899999999999998753  32                 33478888889999999999999999997754 124


Q ss_pred             HHHHHHHHHHhhc
Q 047010          139 RTLYDTLIKKLDQ  151 (153)
Q Consensus       139 ~~~~~~li~~~~~  151 (153)
                      ...|..+-.+|.+
T Consensus        70 ~~a~~~lg~~~~~   82 (356)
T PLN03088         70 AKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHH
Confidence            4455555444443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.84  E-value=1.7  Score=28.22  Aligned_cols=87  Identities=14%  Similarity=0.217  Sum_probs=56.0

Q ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH---------------HHHHHHHHcCC
Q 047010           36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL---------------IHLHNVIDIGH  100 (153)
Q Consensus        36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~~~  100 (153)
                      .+.++-+.+.+++|+...|..+|+.+.+.|++...    ..+...++.+|+...               .+.-.|..+-.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            45666667778888888888888888888875543    444455555555543               12222222111


Q ss_pred             CCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010          101 IPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                          ..+..+++.+...|++-+|+++.+..
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence                15677778888888888888888765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=92.82  E-value=1.4  Score=26.98  Aligned_cols=59  Identities=24%  Similarity=0.298  Sum_probs=48.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .++-..|+.++|..+|++-...|...+..                ...+-.+-+.+...|++++|..+|+.....
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~----------------~~a~i~lastlr~LG~~deA~~~L~~~~~~   67 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADR----------------RRALIQLASTLRNLGRYDEALALLEEALEE   67 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45778899999999999999988766543                235667888899999999999999988653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.39  E-value=2.1  Score=28.05  Aligned_cols=64  Identities=17%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ..|..+-+-|.+.|+.++|.+.|.++......+...                ...+-.+|......+++..+.....+..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~----------------id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK----------------IDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            568889999999999999999999999887766655                3455566666666666666666655554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.31  E-value=2.3  Score=30.61  Aligned_cols=49  Identities=14%  Similarity=0.240  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT   83 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~   83 (153)
                      .|.+-|+.-.+-+--.....||..+.-| +.|+.+.|++...++.++|++
T Consensus       162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence            6777787766654334457788777555 568999999999999998864

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.20  E-value=2.9  Score=34.14  Aligned_cols=95  Identities=21%  Similarity=0.333  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDG--FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI  111 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~--~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  111 (153)
                      .|++....+..+  .||. .|..++.+  ..|.|..++|..+++.....+.  +                 |..|..++-
T Consensus        27 kal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~-----------------D~~tLq~l~   84 (932)
T KOG2053|consen   27 KALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG--T-----------------DDLTLQFLQ   84 (932)
T ss_pred             HHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--C-----------------chHHHHHHH
Confidence            677777776665  2443 35555555  4578899999988887654332  2                 556999999


Q ss_pred             HHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ..|...|+.++|..++++...  ..|+..-...++.+|.|.
T Consensus        85 ~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~  123 (932)
T KOG2053|consen   85 NVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVRE  123 (932)
T ss_pred             HHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHH
Confidence            999999999999999998765  358888888888888764

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=92.17  E-value=0.55  Score=33.33  Aligned_cols=47  Identities=30%  Similarity=0.381  Sum_probs=38.4

Q ss_pred             CCcHhh-HHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010          101 IPRTIT-FNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK  147 (153)
Q Consensus       101 ~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~  147 (153)
                      .||+.+ |+.-|....+.||+++|+.++++.+..|+.--..+|-.-++
T Consensus       253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~  300 (303)
T PRK10564        253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK  300 (303)
T ss_pred             CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence            455555 78999999999999999999999999998776666655443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.93  E-value=5.4  Score=31.76  Aligned_cols=129  Identities=15%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChh-hchHH-----------HHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVT-TYTIL-----------EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l-----------~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~g~~~~a   70 (153)
                      ..+.+++|...|......  +|+.. .+..+           .|...+++-...  +|+ ...|+.|-+++-..|++.+|
T Consensus       264 e~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea  339 (966)
T KOG4626|consen  264 EARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEA  339 (966)
T ss_pred             HHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHH
Confidence            456677777777766653  45543 33322           556666655543  344 35678888888888888888


Q ss_pred             HHHHHHHHHcCC-CchHHHH-----------HHHHHHH--HcCCCCcH-hhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010           71 MELLNEAIERGV-TPNVVTL-----------IHLHNVI--DIGHIPRT-ITFNNVIQALCGVGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus        71 ~~l~~~m~~~~~-~~~~~~~-----------~~~~~~~--~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v  135 (153)
                      .+.+.+.....- -+|.-.-           +-...+.  ...+.|.. ...|-+-..|-+.|++++|..-+++...  |
T Consensus       340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I  417 (966)
T KOG4626|consen  340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I  417 (966)
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence            888877665431 1221110           0111111  11223332 3466777777777888887777776544  4


Q ss_pred             CCC
Q 047010          136 IPS  138 (153)
Q Consensus       136 ~p~  138 (153)
                      .|+
T Consensus       418 ~P~  420 (966)
T KOG4626|consen  418 KPT  420 (966)
T ss_pred             Cch
Confidence            454

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.92  E-value=5.4  Score=31.76  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCchHHHHHHHH----------------HHHHcCCC--CcH--h
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERG------VTPNVVTLIHLH----------------NVIDIGHI--PRT--I  105 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~------~~~~~~~~~~~~----------------~~~~~~~~--~~~--~  105 (153)
                      ..-+--|.-+++.+++++|-+.+...+...      .+.+.-.+..+.                .++..|+.  +|.  .
T Consensus       170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~  249 (835)
T KOG2047|consen  170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGF  249 (835)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHH
Confidence            335566777788888888888877765432      111111221111                12222222  222  5


Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      .|++|.+.|.+.|.++.|.+++++-...  ..++.-|+.+.++|++
T Consensus       250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~  293 (835)
T KOG2047|consen  250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ  293 (835)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence            7999999999999999999999876543  3466777777777753

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=91.92  E-value=0.48  Score=35.73  Aligned_cols=61  Identities=8%  Similarity=0.119  Sum_probs=44.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      -...|.+.|+.-.+...++.|..+|-+..+.|+..                 +++.+++++|.-+| .|+..-|.++|+
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~-----------------h~vyi~~A~~E~~~-~~d~~ta~~ife  456 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG-----------------HHVYIYCAFIEYYA-TGDRATAYNIFE  456 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC-----------------cceeeeHHHHHHHh-cCCcchHHHHHH
Confidence            34678999999999999999999999999988322                 34456666666665 345555555554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.73  E-value=0.56  Score=22.04  Aligned_cols=28  Identities=32%  Similarity=0.354  Sum_probs=23.8

Q ss_pred             hhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010          105 ITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .+++.+-..|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4788999999999999999999998753

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.72  E-value=2.3  Score=30.74  Aligned_cols=28  Identities=11%  Similarity=0.137  Sum_probs=20.3

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047010           48 KPDVYTYTAVMDGFCKVGRSNEVMELLN   75 (153)
Q Consensus        48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~   75 (153)
                      -||..-|-.-|.+++..++|++-.++..
T Consensus       205 v~dkrfw~lki~aLa~~~~w~eL~~fa~  232 (319)
T PF04840_consen  205 VPDKRFWWLKIKALAENKDWDELEKFAK  232 (319)
T ss_pred             CcHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            4677777777777777777777766544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.71  E-value=0.85  Score=22.14  Aligned_cols=28  Identities=21%  Similarity=0.159  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      +|..+-..|...|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6778889999999999999999999875

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.65  E-value=1.5  Score=31.69  Aligned_cols=47  Identities=26%  Similarity=0.424  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      .++.++.+-.+.|+-||.++.+.+|+.+.+.++..+|..+.-.|...
T Consensus       118 ~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  118 KAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            77777788888999999999999999999999999998887776554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=91.56  E-value=5.6  Score=34.48  Aligned_cols=145  Identities=12%  Similarity=0.110  Sum_probs=86.0

Q ss_pred             ccCChHHHHHHHHHHHHC-CCCCCh---hhchHH-----------HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCH
Q 047010            4 NKNDFFEARKVIDYMFDN-GYHPNV---TTYTIL-----------EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRS   67 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~-~~~~~~---~~~~~l-----------~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~   67 (153)
                      +.++.++|++++++.... +++-..   ..|.++           ...+.|.+..+.   .|. -.|..|..-|-+.+..
T Consensus      1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~~~L~~iy~k~ek~ 1546 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVHLKLLGIYEKSEKN 1546 (1710)
T ss_pred             hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHhhcc
Confidence            456778888888887763 221111   233333           345566665554   344 5688899999999999


Q ss_pred             HHHHHHHHHHHHc-CCCchHHHH---------------HHHHHHHHcCC-CCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           68 NEVMELLNEAIER-GVTPNVVTL---------------IHLHNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        68 ~~a~~l~~~m~~~-~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ++|-++++.|.+. |..+...+.               .++.+.+..-. +-.+......+..--+.|+.+.+.-+|+..
T Consensus      1547 ~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1547 DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred             hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence            9999999999774 423332221               22222222111 123344555566666788888888888877


Q ss_pred             HHCCCCCCHHHHHHHHHHhhcC
Q 047010          131 YEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       131 ~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ...- +--.+.|+..|++=.++
T Consensus      1627 l~ay-PKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1627 LSAY-PKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred             HhhC-ccchhHHHHHHHHHHcc
Confidence            5432 12356677777665544

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=90.92  E-value=0.31  Score=30.33  Aligned_cols=32  Identities=16%  Similarity=0.506  Sum_probs=25.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010           63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL  114 (153)
Q Consensus        63 ~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  114 (153)
                      .-|.-..|-.+|++|+++|-+||                    .|+.|+...
T Consensus       107 ~ygsk~DaY~VF~kML~~G~pPd--------------------dW~~Ll~~a  138 (140)
T PF11663_consen  107 AYGSKTDAYAVFRKMLERGNPPD--------------------DWDALLKEA  138 (140)
T ss_pred             hhccCCcHHHHHHHHHhCCCCCc--------------------cHHHHHHHh
Confidence            34455668899999999999998                    788887764

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=90.86  E-value=4.4  Score=28.76  Aligned_cols=80  Identities=16%  Similarity=0.091  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      .|...|++..+.. +.+...|+.+-..+...|++++|.+.|++..+.  .|+                 +..+|..+-..
T Consensus        82 ~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~-----------------~~~a~~~lg~~  141 (296)
T PRK11189         82 LARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPT-----------------YNYAYLNRGIA  141 (296)
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------------CHHHHHHHHHH
Confidence            4444454444432 124456666666666666666666666665542  222                 23577778888


Q ss_pred             HHccCcHHHHHHHHHHHHHC
Q 047010          114 LCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~  133 (153)
                      +...|++++|...|+...+.
T Consensus       142 l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHh
Confidence            88899999999999988764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.71  E-value=4.3  Score=28.42  Aligned_cols=126  Identities=11%  Similarity=0.088  Sum_probs=85.0

Q ss_pred             cCChHHHHHHHHHHHHC---C-CCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH
Q 047010            5 KNDFFEARKVIDYMFDN---G-YHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRS   67 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~---~-~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~g~~   67 (153)
                      ..+.++..+++.++...   | ..++..+....            .|...++++...-  |.+.-...+=.. +=-.|++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence            35677888888887763   4 45555543221            7777888877764  433222222222 2346889


Q ss_pred             HHHHHHHHHHHHcCCCchHHHH--------------HHHHHHHH--cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           68 NEVMELLNEAIERGVTPNVVTL--------------IHLHNVID--IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        68 ~~a~~l~~~m~~~~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ++|.++++.+.+.. +.|.+++              ..++.+-+  ..+..|...|--+-.-|...|++++|..-++++.
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            99999999998876 5555555              33333332  3456788899999999999999999999999887


Q ss_pred             HC
Q 047010          132 EH  133 (153)
Q Consensus       132 ~~  133 (153)
                      -.
T Consensus       182 l~  183 (289)
T KOG3060|consen  182 LI  183 (289)
T ss_pred             Hc
Confidence            53

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.54  E-value=6.5  Score=30.21  Aligned_cols=52  Identities=10%  Similarity=0.110  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL   89 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~   89 (153)
                      .+-++|.+-.+  -+|+...|.+.|+.=.+-..++.|..+++.-+-.  .|+..++
T Consensus       159 gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~w  210 (677)
T KOG1915|consen  159 GARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNW  210 (677)
T ss_pred             HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHH
Confidence            44444443322  3699999999999999999999999999987654  3776666

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=90.36  E-value=4.2  Score=30.78  Aligned_cols=78  Identities=10%  Similarity=0.066  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC--CCcHhhH
Q 047010           34 EAYEMLMNVKNDGLKPDV----YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH--IPRTITF  107 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~----~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  107 (153)
                      +|+..+++-...  .|+.    .+|..+-.+|.+.|+.++|++.+++..+.+ .+.   |..+.  .+..+  -.+...|
T Consensus        93 EAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~---f~~i~--~DpdL~plR~~pef  164 (453)
T PLN03098         93 DALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLK---FSTIL--NDPDLAPFRASPEF  164 (453)
T ss_pred             HHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chh---HHHHH--hCcchhhhcccHHH
Confidence            445555444433  3443    569999999999999999999999998752 111   11000  01111  1133467


Q ss_pred             HHHHHHHHccCc
Q 047010          108 NNVIQALCGVGK  119 (153)
Q Consensus       108 ~~li~~~~~~g~  119 (153)
                      ..++....+.|.
T Consensus       165 ~eLlee~rk~G~  176 (453)
T PLN03098        165 KELQEEARKGGE  176 (453)
T ss_pred             HHHHHHHHHhCC
Confidence            777777777774

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.27  E-value=2.2  Score=30.86  Aligned_cols=93  Identities=15%  Similarity=0.108  Sum_probs=69.2

Q ss_pred             HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHH---------------HHHHHHHHcCCCC
Q 047010           41 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG---VTPNVVTL---------------IHLHNVIDIGHIP  102 (153)
Q Consensus        41 ~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~---~~~~~~~~---------------~~~~~~~~~~~~~  102 (153)
                      .-+..|......+...++..-....+++.+..++-+++...   ..|+...+               ..+.+=...|+-|
T Consensus        54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~  133 (418)
T KOG4570|consen   54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFP  133 (418)
T ss_pred             hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhcccc
Confidence            33456667788888888888888889999999988886632   22333333               2333345678889


Q ss_pred             cHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010          103 RTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      |.++++.+|+.+.+.+++.+|..+--.|...
T Consensus       134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999999999988776543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=90.10  E-value=4.7  Score=27.86  Aligned_cols=57  Identities=11%  Similarity=0.048  Sum_probs=32.2

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCCh-hhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNV-TTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFC   62 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~   62 (153)
                      +.|++++|...|+.+....  |+. ......              .|...+++..+.-+.....-|.-.+.|.+
T Consensus        44 ~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~  115 (243)
T PRK10866         44 QDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT  115 (243)
T ss_pred             HCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence            4678888888888887753  322 111111              67777777766644433444444444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.00  E-value=8.5  Score=30.72  Aligned_cols=74  Identities=15%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCCh-hhchHH-----------HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNV-TTYTIL-----------EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l-----------~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a   70 (153)
                      ..|+.-.|..-|++.++-  .|+- ..|-.|           .|...+.+-.  ...|+. +.|..|-..|-..|.+|.|
T Consensus       230 ~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl--~lrpn~A~a~gNla~iYyeqG~ldlA  305 (966)
T KOG4626|consen  230 AQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL--NLRPNHAVAHGNLACIYYEQGLLDLA  305 (966)
T ss_pred             hcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH--hcCCcchhhccceEEEEeccccHHHH
Confidence            467888888889888874  4542 222222           4444443333  345654 7788888899999999999


Q ss_pred             HHHHHHHHHcC
Q 047010           71 MELLNEAIERG   81 (153)
Q Consensus        71 ~~l~~~m~~~~   81 (153)
                      .+.+++..+..
T Consensus       306 I~~Ykral~~~  316 (966)
T KOG4626|consen  306 IDTYKRALELQ  316 (966)
T ss_pred             HHHHHHHHhcC
Confidence            99999987753

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=89.39  E-value=3.6  Score=25.55  Aligned_cols=57  Identities=18%  Similarity=0.261  Sum_probs=46.3

Q ss_pred             HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010           90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK  147 (153)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~  147 (153)
                      ..+..+....+.|+..+..+-+.+|.+.+|+--|.++|+.++.+ +.+....|-.+++
T Consensus        70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~  126 (149)
T KOG4077|consen   70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK  126 (149)
T ss_pred             HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence            66777888899999999999999999999999999999999753 2344445666554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.36  E-value=2.8  Score=24.94  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=34.8

Q ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      .+-+.++......|+.....+.|.+|.|.+++..|.++|+-.+..
T Consensus        30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            344556677778899999999999999999999999999988664

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=89.31  E-value=4.1  Score=26.07  Aligned_cols=78  Identities=18%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010           34 EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI  111 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  111 (153)
                      +|+..+++.......+  ...+|..+-..|.+.|+.++|++.+++..+.  .|+..                 .++..+.
T Consensus        53 ~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~-----------------~~~~~la  113 (168)
T CHL00033         53 EALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLP-----------------QALNNMA  113 (168)
T ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcH-----------------HHHHHHH
Confidence            6666666665443222  2357888999999999999999999998764  23221                 2344444


Q ss_pred             HHHH-------ccCcHHHHHHHHHHH
Q 047010          112 QALC-------GVGKIDKALLLLFLM  130 (153)
Q Consensus       112 ~~~~-------~~g~~~~a~~~~~~m  130 (153)
                      ..+.       ..|+++.|...+++-
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            4444       788888666666543

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=89.04  E-value=3.8  Score=25.33  Aligned_cols=29  Identities=21%  Similarity=0.342  Sum_probs=16.7

Q ss_pred             CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       118 g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ++++.|.+++.+      .-+...|..++..+...
T Consensus       110 ~d~~~a~~~~~~------~~~~~lw~~~~~~~l~~  138 (140)
T smart00299      110 GNYEKAIEYFVK------QNNPELWAEVLKALLDK  138 (140)
T ss_pred             cCHHHHHHHHHh------CCCHHHHHHHHHHHHcc
Confidence            445555554443      23567888887776543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.60  E-value=1.3  Score=21.92  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=22.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010           57 VMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus        57 ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      +-.+|...|+.+.|.+++++....|
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC
Confidence            5678999999999999999998654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.25  E-value=7.3  Score=27.63  Aligned_cols=108  Identities=12%  Similarity=0.008  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH----------------HHHHHHH-
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL----------------IHLHNVI-   96 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~----------------~~~~~~~-   96 (153)
                      -...++.++.+...+.+..--..+.+.-.+.|+.+.|...|+...+.....+.-.+                +.+.... 
T Consensus       195 iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~  274 (366)
T KOG2796|consen  195 LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF  274 (366)
T ss_pred             hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence            45566667777666677888888889999999999999999977654323322222                1222211 


Q ss_pred             -HcCC---CCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010           97 -DIGH---IPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD  143 (153)
Q Consensus        97 -~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~  143 (153)
                       +...   ..|.+.-|.-.-.....|+..+|.+.++.|++.-  |...+-.
T Consensus       275 ~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e  323 (366)
T KOG2796|consen  275 FTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE  323 (366)
T ss_pred             HhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence             1122   2234444444444455789999999999998753  4444444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=88.18  E-value=5.1  Score=25.78  Aligned_cols=47  Identities=19%  Similarity=0.224  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      +|...+++.......++  ...|..+-..+.+.|++++|...+++..+.
T Consensus        53 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77788877765543332  467888999999999999999999998764

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.18  E-value=4.7  Score=25.38  Aligned_cols=113  Identities=15%  Similarity=0.131  Sum_probs=64.2

Q ss_pred             cCChHHHHHHHHHHHHCC-C-CCChhhchHH---HHHHHHHHHHHcCC--------------------CccHHHHHHHHH
Q 047010            5 KNDFFEARKVIDYMFDNG-Y-HPNVTTYTIL---EAYEMLMNVKNDGL--------------------KPDVYTYTAVMD   59 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~l---~a~~~~~~m~~~g~--------------------~~~~~t~~~ll~   59 (153)
                      .|++++..++.....++. + +.|=+..|.+   +...++.-+..-|-                    ..++.-.+..++
T Consensus        15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ALd   94 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLALD   94 (161)
T ss_dssp             TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHHHH
T ss_pred             hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHHHH
Confidence            578888888888887752 1 1111222333   22233333333332                    123344555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010           60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI  136 (153)
Q Consensus        60 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~  136 (153)
                      ...+.|.-|.-.++.+.+.+.+                   +++....-.+-.+|.+.|+..++.+++++.-+.|+.
T Consensus        95 ~lv~~~kkDqLdki~~~l~kn~-------------------~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   95 ILVKQGKKDQLDKIYNELKKNE-------------------EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHTT-HHHHHHHHHHH------------------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHhccHHHHHHHHHHHhhcc-------------------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            6666777777777777665432                   233346778899999999999999999999888863

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=88.17  E-value=2.2  Score=21.42  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=32.1

Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010          108 NNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK  148 (153)
Q Consensus       108 ~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~  148 (153)
                      ..++.+. +.|-.+++..+++.|.+.|+..+...|..+++.
T Consensus         7 GiL~~Ak-~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~   46 (48)
T PF11848_consen    7 GILLLAK-RRGLISEVKPLLDRLQQAGFRISPKLIEEILRR   46 (48)
T ss_pred             HHHHHHH-HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence            3344444 678888999999999999999999999888764

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=88.10  E-value=2.6  Score=22.29  Aligned_cols=45  Identities=18%  Similarity=0.118  Sum_probs=33.1

Q ss_pred             HhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhh
Q 047010          104 TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS-RTLYDTLIKKLD  150 (153)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~-~~~~~~li~~~~  150 (153)
                      ..+|..+-..+.+.|++++|...|.+..+..  |+ ...|..+=.++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~   48 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYM   48 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence            4578888899999999999999999998754  54 344444444433

...

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.94  E-value=1.3  Score=18.85  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=18.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHH
Q 047010           54 YTAVMDGFCKVGRSNEVMELLN   75 (153)
Q Consensus        54 ~~~ll~~~~~~g~~~~a~~l~~   75 (153)
                      ...+-..+...|++++|+.+++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            4556778999999999999876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=87.73  E-value=7.2  Score=26.93  Aligned_cols=124  Identities=16%  Similarity=0.064  Sum_probs=83.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChh-hch-----HH------HHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVT-TYT-----IL------EAYEMLMNVKND-GLKPDVYTYTAVMDGFCKVGRSN   68 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~-----~l------~a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~g~~~   68 (153)
                      |-+.|..+.|.+-|+...+..  |+.. +.|     .+      ++...|++-... -...-..||..+--|..+.|+.+
T Consensus        79 Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~  156 (250)
T COG3063          79 YQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFD  156 (250)
T ss_pred             HHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCch
Confidence            445688888999999888753  3322 222     11      777778776655 33335578999999999999999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010           69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK  147 (153)
Q Consensus        69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~  147 (153)
                      .|.+.|++-.+..-..+                   -+.-.+....-+.|++..|..+++.-...+. ++..+.-..|+
T Consensus       157 ~A~~~l~raL~~dp~~~-------------------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~ir  215 (250)
T COG3063         157 QAEEYLKRALELDPQFP-------------------PALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIR  215 (250)
T ss_pred             hHHHHHHHHHHhCcCCC-------------------hHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHH
Confidence            99999999877642221                   1344566666667777777777776655543 66665555444

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.52  E-value=8.5  Score=27.56  Aligned_cols=112  Identities=15%  Similarity=0.126  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHCCC---CCChhhchHH-------------HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCC--H
Q 047010            8 FFEARKVIDYMFDNGY---HPNVTTYTIL-------------EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGR--S   67 (153)
Q Consensus         8 ~~~a~~~~~~m~~~~~---~~~~~~~~~l-------------~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~--~   67 (153)
                      ..+|..+|+.|++...   .++-..+..+             .+..+++.+...|...  +.+..+.++..+.....  +
T Consensus       119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v  198 (297)
T PF13170_consen  119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKV  198 (297)
T ss_pred             HHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHH
Confidence            4579999999999752   3333444444             6778888888888765  33555555555544444  3


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHH--HcCCCCcHhhHHHHHHHHHccCc
Q 047010           68 NEVMELLNEAIERGVTPNVVTLIHLHNVI--DIGHIPRTITFNNVIQALCGVGK  119 (153)
Q Consensus        68 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~  119 (153)
                      ..+.++++.+.+.|+++....|..+--+.  ..+..-......-+++.+++...
T Consensus       199 ~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~k~  252 (297)
T PF13170_consen  199 ARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQKG  252 (297)
T ss_pred             HHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhCcc
Confidence            48999999999999887766543222221  11111233444455555554444

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=87.40  E-value=4.2  Score=23.94  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=37.5

Q ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010           36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus        36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      .+-++++......|+...-.+.+.+|.|.+++..|.++|+-.+.
T Consensus        27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34455666677889999999999999999999999999998764

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=86.55  E-value=13  Score=28.58  Aligned_cols=111  Identities=14%  Similarity=0.313  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH--------------HHHHHHHHc
Q 047010           34 EAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL--------------IHLHNVIDI   98 (153)
Q Consensus        34 ~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~--------------~~~~~~~~~   98 (153)
                      .|..+|.+..+.| +.+++..++++|.-++. |+..-|.++|+.-.+.  -||...|              .-++.+++.
T Consensus       415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFet  491 (660)
T COG5107         415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFET  491 (660)
T ss_pred             HHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            4556666666776 56788888888887764 5777788888765443  2333333              111222221


Q ss_pred             CC---CCc--HhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010           99 GH---IPR--TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus        99 ~~---~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~  149 (153)
                      .+   ..+  ...|..+|+.-...|+...+..+-++|.+.  .|...+...+...|
T Consensus       492 sv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry  545 (660)
T COG5107         492 SVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY  545 (660)
T ss_pred             hHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence            11   122  358999999999999999888888888763  56665555555444

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=86.21  E-value=1.7  Score=23.16  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=25.2

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      .|-.-.=.+|.||.+.|++++|.++++++.+
T Consensus        21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen   21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3555566789999999999999999998865

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=86.16  E-value=16  Score=29.41  Aligned_cols=44  Identities=14%  Similarity=0.014  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI   78 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~   78 (153)
                      .+..++.+.++.... +...|-+-+..-+.+..++.|..+|.+..
T Consensus       602 ~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar  645 (913)
T KOG0495|consen  602 AARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR  645 (913)
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence            334444444443221 44455555555555555555555555543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=86.07  E-value=9.4  Score=30.73  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=28.7

Q ss_pred             CCCcH-hhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010          100 HIPRT-ITFNNVIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus       100 ~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      ..||. ..||.+-.+|.+.|+-.+|...+++..+.+
T Consensus       548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            34544 469999999999999999999999887765

>PRK13342 recombination factor protein RarA; Reviewed

Probab=85.92  E-value=13  Score=27.94  Aligned_cols=111  Identities=20%  Similarity=0.109  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHH---cCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc---CCCCcHhh
Q 047010           34 EAYEMLMNVKN---DGL-KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDI---GHIPRTIT  106 (153)
Q Consensus        34 ~a~~~~~~m~~---~g~-~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  106 (153)
                      +...++.+...   .|+ ..+......++..+  .|+...++.+++.....+...+...   +..+...   ....+...
T Consensus       155 ~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~---v~~~~~~~~~~~d~~~~~  229 (413)
T PRK13342        155 DIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLEL---LEEALQKRAARYDKDGDE  229 (413)
T ss_pred             HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHH---HHHHHhhhhhccCCCccH
Confidence            44455554432   243 45555566665543  7899999999998766533333333   3333221   11122223


Q ss_pred             HHHHHHHHHc---cCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010          107 FNNVIQALCG---VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       107 ~~~li~~~~~---~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~  149 (153)
                      .--+++++.+   ..+++.|+..+..|.+.|..|....-..++.++
T Consensus       230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~  275 (413)
T PRK13342        230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS  275 (413)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            3344444444   478999999999999999888766555555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.83  E-value=2.2  Score=19.06  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      .+|..+-.+|...|++++|++.|++.++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            46788889999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=85.72  E-value=6.4  Score=28.49  Aligned_cols=90  Identities=12%  Similarity=0.151  Sum_probs=58.2

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhc-hHH------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTY-TIL------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNE   76 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~   76 (153)
                      ..|+...|.++-.+.+    -|+..-| ..+      .-++-+.++...  +.++.-|...+.+|.+.|+..+|..+...
T Consensus       189 ~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k  262 (319)
T PF04840_consen  189 EMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPK  262 (319)
T ss_pred             HCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence            4566666655544432    2444333 223      222333333332  34569999999999999999999999888


Q ss_pred             HHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010           77 AIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL  127 (153)
Q Consensus        77 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  127 (153)
                      +                            .+..-+..|.++|++.+|.+.-
T Consensus       263 ~----------------------------~~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  263 I----------------------------PDEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             C----------------------------ChHHHHHHHHHCCCHHHHHHHH
Confidence            2                            3346788888999998887653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=85.55  E-value=18  Score=29.39  Aligned_cols=107  Identities=12%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      ...++.+++  ++-...+.-+-|-...+..+ .-.-.+.++....++-|...|..+.-+..+.|+++.+-+.|++.....
T Consensus       276 ~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~  353 (799)
T KOG4162|consen  276 LPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS  353 (799)
T ss_pred             CCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            344555555  33333333333443333333 223344455555566799999999999999999999999999876533


Q ss_pred             CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ..-                   ...|..+-..|..+|.-..|..+++.-
T Consensus       354 ~~~-------------------~e~w~~~als~saag~~s~Av~ll~~~  383 (799)
T KOG4162|consen  354 FGE-------------------HERWYQLALSYSAAGSDSKAVNLLRES  383 (799)
T ss_pred             hhh-------------------HHHHHHHHHHHHHhccchHHHHHHHhh
Confidence            211                   124555555555555555555555443

>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation

Probab=85.51  E-value=5  Score=22.98  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=35.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI  105 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (153)
                      ...+|..-+..-.... .++. ++|+--...|+..|+.+|+++.++.+.++.|+.+
T Consensus         9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI   62 (88)
T PF12926_consen    9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAI   62 (88)
T ss_pred             hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHH
Confidence            3445555443322222 2222 7888888889999999888888888888877653

This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.26  E-value=4.9  Score=22.64  Aligned_cols=54  Identities=15%  Similarity=0.182  Sum_probs=38.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        58 l~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      +..| ...+-++|+..+...++.-..+...                -.+...++.+|+..|++.+.+.+-.
T Consensus        14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~r----------------f~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen   14 LKLY-HQNETQQALQKWRKALEKITDREDR----------------FRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             HHHh-ccchHHHHHHHHHHHHhhcCChHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 6667788888888877654333222                2589999999999999998887653

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.05  E-value=6  Score=32.25  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHH
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      .++-.|..|.+.|+|+.|.++-.+.
T Consensus       793 ~~~dai~my~k~~kw~da~kla~e~  817 (1636)
T KOG3616|consen  793 LFKDAIDMYGKAGKWEDAFKLAEEC  817 (1636)
T ss_pred             hhHHHHHHHhccccHHHHHHHHHHh
Confidence            4566777888888888887776554

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=84.75  E-value=2.9  Score=29.85  Aligned_cols=41  Identities=22%  Similarity=0.324  Sum_probs=34.2

Q ss_pred             CCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH
Q 047010           47 LKPDVYT-YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV   87 (153)
Q Consensus        47 ~~~~~~t-~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~   87 (153)
                      +.||..+ |+..|..-.+.||+++|++++++..+.|+.--..
T Consensus       252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~  293 (303)
T PRK10564        252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARS  293 (303)
T ss_pred             cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHH
Confidence            3466666 5799999999999999999999999999865444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=84.72  E-value=1.9  Score=18.91  Aligned_cols=24  Identities=25%  Similarity=0.509  Sum_probs=20.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           57 VMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        57 ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      +-.++.+.|++++|.+.|++..+.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            445677899999999999998764

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.46  E-value=25  Score=30.08  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=12.3

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .|.-+|+...+.|.|++-.+++.-.++
T Consensus      1135 ~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            444444444444444444444443333

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=84.41  E-value=13  Score=26.61  Aligned_cols=64  Identities=6%  Similarity=-0.005  Sum_probs=48.8

Q ss_pred             HHHHHHH-HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhcCC
Q 047010           90 IHLHNVI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH-GKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus        90 ~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~v~p~~~~~~~li~~~~~~g  153 (153)
                      +.+..+. +.+..++..+..++|..++..++|..-+++....... +-.-|...|..+|+....+|
T Consensus       187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sg  252 (292)
T PF13929_consen  187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESG  252 (292)
T ss_pred             HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcC
Confidence            4444444 2456778888999999999999999999888877543 55668888998888877665

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=84.34  E-value=12  Score=26.52  Aligned_cols=59  Identities=15%  Similarity=0.199  Sum_probs=43.7

Q ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHH
Q 047010           37 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-----RGVTPNVVTLIHLHNVI   96 (153)
Q Consensus        37 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~~~~~~~~~~   96 (153)
                      +.++++... -+-|...|..+|.+|.+.|+...|...|+.+.+     .|+.|...+.....+..
T Consensus       174 ~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~  237 (280)
T COG3629         174 EHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEIL  237 (280)
T ss_pred             HHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh
Confidence            344444443 235889999999999999999999999999876     46777776665555553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=84.26  E-value=23  Score=29.60  Aligned_cols=81  Identities=5%  Similarity=0.038  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVI-DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ..+-.+-.+|-+.|+.++|..++++..+.. +-+..+++-+-... .....--...+.-.+..|...+++..+..+..++
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~  195 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL  195 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            566678888888899999999999999877 33333332222211 1122222334555555666666666666666666


Q ss_pred             HHC
Q 047010          131 YEH  133 (153)
Q Consensus       131 ~~~  133 (153)
                      .+.
T Consensus       196 ~~~  198 (906)
T PRK14720        196 VHY  198 (906)
T ss_pred             Hhc
Confidence            554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.24  E-value=17  Score=28.41  Aligned_cols=80  Identities=13%  Similarity=0.134  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010           34 EAYEMLMNVKN-DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ  112 (153)
Q Consensus        34 ~a~~~~~~m~~-~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  112 (153)
                      +..++|-++-. .+..+|.-.+..|=-.|--.|.+++|.+.|+..+..  .|+..                 ..||-+=.
T Consensus       412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~-----------------~lWNRLGA  472 (579)
T KOG1125|consen  412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDY-----------------LLWNRLGA  472 (579)
T ss_pred             HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchH-----------------HHHHHhhH
Confidence            45555555543 354467777777777778888999999999987653  45433                 46666666


Q ss_pred             HHHccCcHHHHHHHHHHHHH
Q 047010          113 ALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       113 ~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .++...+-++|...+++..+
T Consensus       473 tLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  473 TLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HhcCCcccHHHHHHHHHHHh
Confidence            66666666666666666654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=83.73  E-value=13  Score=26.21  Aligned_cols=82  Identities=11%  Similarity=0.137  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCchHH--HHHHHHHHHHcCCCCc--HhhHHHHHHHHHccCcHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIE---RG-VTPNVV--TLIHLHNVIDIGHIPR--TITFNNVIQALCGVGKIDKA  123 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~---~~-~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a  123 (153)
                      ..|.-.+..|.+.|++..|-+++..+-+   .. -.++..  .|.-...+....-.+.  ...+.-+...+.+.|++++|
T Consensus        95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A  174 (282)
T PF14938_consen   95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA  174 (282)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence            5578888888888888888888877644   11 123322  2233333333222332  34677888899999999999


Q ss_pred             HHHHHHHHHC
Q 047010          124 LLLLFLMYEH  133 (153)
Q Consensus       124 ~~~~~~m~~~  133 (153)
                      ..+|++....
T Consensus       175 ~~~~e~~~~~  184 (282)
T PF14938_consen  175 IEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=83.19  E-value=14  Score=26.31  Aligned_cols=99  Identities=13%  Similarity=0.195  Sum_probs=67.0

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHH--------------HHHHHHHHc--CCCC-cHhhHHH
Q 047010           48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER-GVTPNVVTL--------------IHLHNVIDI--GHIP-RTITFNN  109 (153)
Q Consensus        48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~~~--------------~~~~~~~~~--~~~~-~~~~~~~  109 (153)
                      +-|...|-.|=..|.+.|+.+.|..-|..-.+. |-.|+...-              .....+++.  ...| |+.+-.-
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            347899999999999999999999999987653 333433321              122223322  1223 4455555


Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010          110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK  148 (153)
Q Consensus       110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~  148 (153)
                      +--++...|++++|...++.|.+..  |..+.+..+|+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~  269 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence            6667889999999999999998854  555556655543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.79  E-value=14  Score=25.95  Aligned_cols=146  Identities=14%  Similarity=0.139  Sum_probs=82.8

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH----HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEVMELLNE   76 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a~~l~~~   76 (153)
                      |-.+.++++|...+....+ +.+.|..-|...    .+.-++++|...   +.. .-|+-....|..+|.++-|-..+++
T Consensus        41 fRnAk~feKakdcLlkA~~-~yEnnrslfhAAKayEqaamLake~~kl---sEvvdl~eKAs~lY~E~GspdtAAmaleK  116 (308)
T KOG1585|consen   41 FRNAKKFEKAKDCLLKASK-GYENNRSLFHAAKAYEQAAMLAKELSKL---SEVVDLYEKASELYVECGSPDTAAMALEK  116 (308)
T ss_pred             HHhhccHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence            4455667777665555543 234555555555    444455555543   222 3477788889999988888777776


Q ss_pred             HHH--cCCCchHHHH--------------------------HHH----------HHHHHcC-------CCCcH-hhHHHH
Q 047010           77 AIE--RGVTPNVVTL--------------------------IHL----------HNVIDIG-------HIPRT-ITFNNV  110 (153)
Q Consensus        77 m~~--~~~~~~~~~~--------------------------~~~----------~~~~~~~-------~~~~~-~~~~~l  110 (153)
                      .-+  .++.|+....                          +++          ....+.+       ..++. ..|-+.
T Consensus       117 Aak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~  196 (308)
T KOG1585|consen  117 AAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAA  196 (308)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHH
Confidence            544  4566776643                          000          0011111       11222 235555


Q ss_pred             HHHHHccCcHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhhc
Q 047010          111 IQALCGVGKIDKALLLLFLMYEH---GKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       111 i~~~~~~g~~~~a~~~~~~m~~~---~v~p~~~~~~~li~~~~~  151 (153)
                      |-.+....++..|...++..-+.   .-.-+..+...||.+|-.
T Consensus       197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~  240 (308)
T KOG1585|consen  197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE  240 (308)
T ss_pred             HHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc
Confidence            66666677888888888775432   223355677777777643

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=82.63  E-value=2  Score=19.66  Aligned_cols=24  Identities=13%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVME   72 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~   72 (153)
                      -|...|+.+=..|...|++++|++
T Consensus        11 ~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen   11 NNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             CCHHHHHHHHHHHHHCcCHHhhcC
Confidence            477899999999999999999863

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.62  E-value=4.1  Score=20.08  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=21.8

Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHCC
Q 047010          110 VIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus       110 li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      +-.+|...|+.+.|..++++....|
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC
Confidence            5678999999999999999988655

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=82.02  E-value=22  Score=27.69  Aligned_cols=105  Identities=17%  Similarity=0.109  Sum_probs=67.9

Q ss_pred             cCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCchHH-HH---------------------HHHHHHHH
Q 047010           45 DGLKPDVYTYTAVMDGFCKVG-----RSNEVMELLNEAIERGVTPNVV-TL---------------------IHLHNVID   97 (153)
Q Consensus        45 ~g~~~~~~t~~~ll~~~~~~g-----~~~~a~~l~~~m~~~~~~~~~~-~~---------------------~~~~~~~~   97 (153)
                      ...+.|...|...+.+.....     +.+.|.++|++..+.  .|+.. .+                     ..+.....
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            344567788999888855433     366888888887664  34322 11                     01111111


Q ss_pred             c-----CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010           98 I-----GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus        98 ~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      .     ....+...|.++--.....|++++|...+++..+.+  |+...|..+-+.+...|
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G  467 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKG  467 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcC
Confidence            1     123344677777666667899999999999998876  68888888777776554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=81.28  E-value=16  Score=25.64  Aligned_cols=66  Identities=14%  Similarity=0.100  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ...|...+..+.+.|++++|...|+...+.-  |+..              -....+-.+-..|...|++++|...|+..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~--------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~v  206 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDST--------------YQPNANYWLGQLNYNKGKKDDAAYYFASV  206 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCc--------------chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4567777777788899999999999998752  2211              00124556777888899999999999988


Q ss_pred             HH
Q 047010          131 YE  132 (153)
Q Consensus       131 ~~  132 (153)
                      .+
T Consensus       207 v~  208 (263)
T PRK10803        207 VK  208 (263)
T ss_pred             HH
Confidence            65

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=81.12  E-value=22  Score=27.05  Aligned_cols=124  Identities=9%  Similarity=0.101  Sum_probs=65.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS   67 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~   67 (153)
                      +...|+.++|...|+..+-    .|+.+...+              ....+..+++... ......|-.-........++
T Consensus       242 ~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~  316 (564)
T KOG1174|consen  242 LYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKF  316 (564)
T ss_pred             hhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhH
Confidence            5567888888888887664    334444333              2222222332220 11222333333334445566


Q ss_pred             HHHHHHHHHHHHcCCC-chHHHH-------------HHHHHHHHcCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           68 NEVMELLNEAIERGVT-PNVVTL-------------IHLHNVIDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        68 ~~a~~l~~~m~~~~~~-~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      +.|+.+-.+-.+..-. .....+             .++..-......| +...|.-++..|...|.+++|..+-+.-
T Consensus       317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~  394 (564)
T KOG1174|consen  317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT  394 (564)
T ss_pred             HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence            6666665554432211 000111             1222222334444 6789999999999999999988766543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.06  E-value=25  Score=27.77  Aligned_cols=101  Identities=15%  Similarity=0.101  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCchHHHH---------------HHHHHHHH--cCCCCcHh
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLN--------EAIERGVTPNVVTL---------------IHLHNVID--IGHIPRTI  105 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~--------~m~~~~~~~~~~~~---------------~~~~~~~~--~~~~~~~~  105 (153)
                      ..+-=.++.--...|+++.|.+++.        ...+.+..|-.+..               .++.....  ....+...
T Consensus       376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~  455 (652)
T KOG2376|consen  376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI  455 (652)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence            4556667777888999999999999        66667777776655               11111110  01111112


Q ss_pred             ----hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          106 ----TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       106 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                          ++--...--.+.|+-++|..+++++.+.+ .++..+..-++.+|++-
T Consensus       456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL  505 (652)
T ss_pred             HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence                23333333347799999999999998754 57888888999888763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=80.72  E-value=3.9  Score=18.11  Aligned_cols=28  Identities=21%  Similarity=0.376  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      .+|..+=..|...|++++|.+.|++-.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3567777889999999999999998765

...

>PF14669 Asp_Glu_race_2: Putative aspartate racemase

Probab=80.07  E-value=8.4  Score=25.90  Aligned_cols=70  Identities=17%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH-cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVID-IGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      -+++-.|-+.-+|.++.++++.|.+..+..+.-     .-+.. ....+--...|....-|.++|.+|.|+.++++
T Consensus       136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~L-----KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre  206 (233)
T PF14669_consen  136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSL-----KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE  206 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-----cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence            467888999999999999999998866544321     11111 11233445788889999999999999999984

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=80.05  E-value=3.7  Score=21.81  Aligned_cols=25  Identities=24%  Similarity=0.222  Sum_probs=20.9

Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHHH
Q 047010          108 NNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       108 ~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      -.+|.++...|++++|.++++.+.+
T Consensus        27 LqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen   27 LQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3678999999999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-07

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 22/122 (18%)

Query: 34  EAYEMLMNVKN---DGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI 90
            A+ +L+             +  Y AVM G+ + G   E++ +L    + G+TP+++   
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL--- 201

Query: 91  HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL-LLFLMYEHGKIPSRTLYDTLIKKL 149
                          ++   +Q +    +    +   L  M + G          L+ + 
Sbjct: 202 ---------------SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246

Query: 150 DQ 151
           D+
Sbjct: 247 DR 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.9
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.84
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.42
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.4
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.78
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.72
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.67
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.66
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.64
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.6
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.58
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.5
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.49
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.46
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.45
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.44
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.42
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.37
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.36
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.35
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.32
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.3
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.3
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.29
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.24
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.21
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.2
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.16
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.14
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.12
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.1
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.1
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.1
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.08
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.05
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.03
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.0
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.99
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.97
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.89
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.86
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.84
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.84
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.83
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.83
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.8
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.79
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.75
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.75
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.73
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.7
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.7
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.7
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.69
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.63
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.62
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.6
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.57
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.55
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.51
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.48
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.46
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.44
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.41
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.41
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.39
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.38
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.37
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.36
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.35
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.31
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.3
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.29
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.28
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.25
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.24
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.24
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.23
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.22
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.22
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.18
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.17
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.14
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.07
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.02
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.98
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.9
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.89
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.87
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.82
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.76
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.73
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.69
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.68
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.68
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.65
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.63
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.58
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.58
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.58
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.51
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.46
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.42
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.41
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.32
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.31
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.28
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.28
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.27
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.18
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.18
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.11
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.88
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	95.87
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.75
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.73
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.72
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.69
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.65
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	95.64
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.51
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	95.42
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	95.38
4g1t_A	472	Interferon-induced protein with tetratricopeptide	95.27
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.17
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	95.05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	94.98
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.8
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	94.75
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.69
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.68
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	94.39
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	94.37
2l6j_A	111	TPR repeat-containing protein associated with HSP;	94.33
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	94.29
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.25
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	94.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	93.84
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.84
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	93.71
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.58
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	93.01
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.62
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	92.56
2kat_A	115	Uncharacterized protein; NESG, structure, structur	92.53
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	92.49
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	92.27
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	92.25
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	91.97
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	91.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	91.64
1pc2_A	152	Mitochondria fission protein; unknown function; NM	90.91
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.04
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	89.92
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	89.74
1pc2_A	152	Mitochondria fission protein; unknown function; NM	89.18
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	88.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	85.91
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	85.42
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.73
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	84.05
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	82.43
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	81.63
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	81.44
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.6

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=8.7e-36  Score=220.34  Aligned_cols=151  Identities=14%  Similarity=0.218  Sum_probs=145.8

Q ss_pred             CccccCChHHHHHHHHHHHHCCCCCChhhchHH--------------------HHHHHHHHHHHcCCCccHHHHHHHHHH
Q 047010            1 CYCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------EAYEMLMNVKNDGLKPDVYTYTAVMDG   60 (153)
Q Consensus         1 a~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------------~a~~~~~~m~~~g~~~~~~t~~~ll~~   60 (153)
                      +|++.|++++|..+|++|.+.|++||..|||.|                    .|.++|++|...|+.||..|||+||.+
T Consensus        35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~  114 (501)
T 4g26_A           35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL  114 (501)
T ss_dssp             HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            489999999999999999999999999999988                    578999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010           61 FCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA  123 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  123 (153)
                      |++.|++++|+++|++|.+.|+.||..+|                 .++.+|.+.|+.||..||+++|.+|++.|++++|
T Consensus       115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A  194 (501)
T 4g26_A          115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV  194 (501)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence            99999999999999999999999999998                 6778899999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          124 LLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       124 ~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      .++|++|++.|+.|+..||+.++..|+.
T Consensus       195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          195 YKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            9999999999999999999999999875

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=6.8e-29  Score=183.58  Aligned_cols=145  Identities=17%  Similarity=0.231  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHCCCCCChh-hchH-H----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---------H
Q 047010            9 FEARKVIDYMFDNGYHPNVT-TYTI-L----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR---------S   67 (153)
Q Consensus         9 ~~a~~~~~~m~~~~~~~~~~-~~~~-l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~---------~   67 (153)
                      ..+..+.+.+++++..+.+. .++. |          +|+++|++|.+.|++||.+|||+||.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            45677778888887765543 3333 3          999999999999999999999999999998765         6


Q ss_pred             HHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           68 NEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        68 ~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ++|.++|++|.+.|+.||..+|                 .++.+|.+.|+.||.+|||++|.+||+.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            8999999999999999999998                 67788999999999999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHhhcCC
Q 047010          131 YEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       131 ~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      .+.|+.||..||++||++|++.|
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g  189 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTK  189 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCC
Confidence            99999999999999999999986

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.90  E-value=1.4e-24  Score=168.03  Aligned_cols=100  Identities=19%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             HHHHHHHHHH---HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHH
Q 047010           34 EAYEMLMNVK---NDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV  110 (153)
Q Consensus        34 ~a~~~~~~m~---~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (153)
                      +|.++|.+|.   ..|+.||.+|||+||+|||+.|++++|.++|++|.+.|+.||..                  |||++
T Consensus       145 eA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv------------------TYntL  206 (1134)
T 3spa_A          145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL------------------SYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH------------------HHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH------------------HHHHH
Confidence            5666665554   45789999999999999999999999999999999999877655                  99999


Q ss_pred             HHHHHccCc-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          111 IQALCGVGK-IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       111 i~~~~~~g~-~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      |+++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.|
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            999999997 58899999999999999999999977766654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.84  E-value=5e-21  Score=148.48  Aligned_cols=90  Identities=13%  Similarity=0.144  Sum_probs=79.5

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      --..|||++|++||+.|++++|.++|++|.+.               ...|..||++|||+||++||+.|++++|.++|+
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m---------------~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~  189 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ---------------RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF  189 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS---------------HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------hhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Confidence            34579999999999999999999999998642               122334567799999999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          129 LMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       129 ~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      +|++.|+.||..||++||+++|+.|
T Consensus       190 eM~~~G~~PDvvTYntLI~glcK~G  214 (1134)
T 3spa_A          190 MVKDAGLTPDLLSYAAALQCMGRQD  214 (1134)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCcHHHHHHHHHHHHhCC
Confidence            9999999999999999999999865

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.42  E-value=2.6e-11  Score=90.58  Aligned_cols=147  Identities=12%  Similarity=-0.005  Sum_probs=72.1

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      .+.|++++|..+|+.+.+.. +.+..+|+.+           +|.++|+++.+.+ +.+..+|+.+..+|.+.|++++|.
T Consensus       384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  461 (597)
T 2xpi_A          384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN  461 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            34455555555555554421 1223344433           4555555554432 224455555555555555555555


Q ss_pred             HHHHHHHHcCCCchHHHH-----------------HHHHHHHHc----CCCCc--HhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           72 ELLNEAIERGVTPNVVTL-----------------IHLHNVIDI----GHIPR--TITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        72 ~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      ++|+++.+.. +.+..++                 ..+..+.+.    +..|+  ..+|..+..+|.+.|++++|..+|+
T Consensus       462 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~  540 (597)
T 2xpi_A          462 EYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN  540 (597)
T ss_dssp             HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            5555554432 1122222                 222223222    44554  4566666666666666666666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          129 LMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       129 ~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      ++.+.+ ..+..+|..+..+|.+.|
T Consensus       541 ~~~~~~-p~~~~~~~~l~~~~~~~g  564 (597)
T 2xpi_A          541 QGLLLS-TNDANVHTAIALVYLHKK  564 (597)
T ss_dssp             HHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred             HHHHhC-CCChHHHHHHHHHHHHhC
Confidence            655443 235556666666555543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.40  E-value=3e-11  Score=90.23  Aligned_cols=117  Identities=8%  Similarity=-0.028  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVI   96 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~   96 (153)
                      +|.+.|+++.+.. +.+..+|+.+..+|.+.|++++|.++|+++.+.+- .+..++                 ..+..+.
T Consensus       391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
T 2xpi_A          391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSY  468 (597)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6666666665532 23566777777777777777777777777766432 222222                 2333333


Q ss_pred             HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhhcCC
Q 047010           97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH----GKIPS--RTLYDTLIKKLDQQP  153 (153)
Q Consensus        97 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~v~p~--~~~~~~li~~~~~~g  153 (153)
                      +.. ..+..+|+.+...|.+.|++++|..+|+++.+.    +..|+  ..+|..+..+|.+.|
T Consensus       469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g  530 (597)
T 2xpi_A          469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK  530 (597)
T ss_dssp             HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred             HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence            322 236778888888888888888888888888654    66777  678888888887765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.94  E-value=2.7e-07  Score=63.75  Aligned_cols=142  Identities=11%  Similarity=0.065  Sum_probs=104.3

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      +.+.++.++|...++.+...+..|+...+...            +|++.+++      +.+...+..+...|.+.|++++
T Consensus        75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~  148 (291)
T 3mkr_A           75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL  148 (291)
T ss_dssp             HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred             HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence            45678899999999999987766665444322            66666655      4678899999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHH--------------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTL--------------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      |.+.|+++.+..  |+....                    ..+.++.+. ...+...|+.+..++.+.|++++|...|++
T Consensus       149 A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~  225 (291)
T 3mkr_A          149 ARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQE  225 (291)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999998874  443211                    222333333 345778899999999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          130 MYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      ..+.. +-+..++..+...+...|
T Consensus       226 al~~~-p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          226 ALDKD-SGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHcC
Confidence            87654 235667777776655443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.78  E-value=2.7e-06  Score=60.28  Aligned_cols=116  Identities=14%  Similarity=0.035  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVI   96 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~   96 (153)
                      ++...+.+..... +.+..+|..+..+|.+.|++++|.+.|+++.+..-. +..++                 ..+..+.
T Consensus       221 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al  298 (388)
T 1w3b_A          221 RAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL  298 (388)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444444444331 124667777777888888888888888877765321 11222                 1222222


Q ss_pred             HcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010           97 DIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus        97 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      +. ...+..+|+.+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|
T Consensus       299 ~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  353 (388)
T 1w3b_A          299 RL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTT
T ss_pred             hh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence            22 23456677777777777777777777777776532 234566666666666544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.72  E-value=3.9e-06  Score=55.77  Aligned_cols=146  Identities=10%  Similarity=-0.017  Sum_probs=89.9

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ...|++++|...|+.+.+.. +.+...+..+           +|.+.+++..+.. +.+...|..+...|.+.|++++|.
T Consensus        48 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~  125 (252)
T 2ho1_A           48 LQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAY  125 (252)
T ss_dssp             HHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHH
Confidence            45678888888888877653 2233344333           6777777766553 235677777888888888888888


Q ss_pred             HHHHHHHHcCCCchHH-HH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           72 ELLNEAIERGVTPNVV-TL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        72 ~l~~~m~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      ++|++..+.+..|+.. .+                 ..+....... ..+...+..+...+...|++++|...++...+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  204 (252)
T 2ho1_A          126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG  204 (252)
T ss_dssp             HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8888877643444332 22                 1222222221 224567777777888888888888888877654


Q ss_pred             CCCCCHHHHHHHHHHhhcC
Q 047010          134 GKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       134 ~v~p~~~~~~~li~~~~~~  152 (153)
                      . ..+...+..+...+.+.
T Consensus       205 ~-~~~~~~~~~~~~~~~~~  222 (252)
T 2ho1_A          205 G-GQNARSLLLGIRLAKVF  222 (252)
T ss_dssp             S-CCCHHHHHHHHHHHHHT
T ss_pred             C-cCcHHHHHHHHHHHHHc
Confidence            3 23455555555555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.70  E-value=5.6e-06  Score=53.76  Aligned_cols=147  Identities=12%  Similarity=0.055  Sum_probs=101.3

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-GRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~-g~~~~   69 (153)
                      |.+.|++++|...|....+.. +.+...+..+           +|...+++..+.. +.+...|..+...|... |++++
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~   95 (225)
T 2vq2_A           18 YMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAE   95 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHH
Confidence            456799999999999988853 2334444444           7888888877653 34678899999999999 99999


Q ss_pred             HHHHHHHHHHcCCCchHH-HH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVV-TL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      |.+.+++..+.+..|+.. .+                 ..+....... ..+...+..+...+.+.|++++|...+++..
T Consensus        96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  174 (225)
T 2vq2_A           96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQ  174 (225)
T ss_dssp             HHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999998844444332 22                 2222222221 2346778888888999999999999998887


Q ss_pred             HCCCCCCHHHHHHHHHHhhc
Q 047010          132 EHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       132 ~~~v~p~~~~~~~li~~~~~  151 (153)
                      +..-..+...+..+...+.+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~  194 (225)
T 2vq2_A          175 SRVEVLQADDLLLGWKIAKA  194 (225)
T ss_dssp             HHHCSCCHHHHHHHHHHHHH
T ss_pred             HhCCCCCHHHHHHHHHHHHh
Confidence            64321355556555554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.68  E-value=2.1e-06  Score=50.99  Aligned_cols=111  Identities=19%  Similarity=0.227  Sum_probs=83.9

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|..++..+.+.. +.+...+..+           .|...+.+..... +.+...|..+...+.+.|++++|
T Consensus        11 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A   88 (136)
T 2fo7_A           11 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEA   88 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHH
Confidence            346789999999999988754 2234444433           7777787777654 34567888888999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .++++++.+..  |                 .+..++..+...+.+.|++++|...++++.+.
T Consensus        89 ~~~~~~~~~~~--~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           89 IEYYQKALELD--P-----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--C-----------------CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            99999887653  2                 12347788888999999999999999988664

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.67  E-value=3.5e-06  Score=55.86  Aligned_cols=147  Identities=13%  Similarity=0.118  Sum_probs=92.4

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCC--cc----HHHHHHHHHHHHhc
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLK--PD----VYTYTAVMDGFCKV   64 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~--~~----~~t~~~ll~~~~~~   64 (153)
                      +.+.|++++|...|+...+..  .+...|..+           .|...+.+..+....  ++    ...|..+-..|.+.
T Consensus        15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (258)
T 3uq3_A           15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL   92 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence            456789999999999998876  666666554           777777776654211  12    57889999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC------------------------CchHHHH------------------HHHHHHHHcCCCC
Q 047010           65 GRSNEVMELLNEAIERGV------------------------TPNVVTL------------------IHLHNVIDIGHIP  102 (153)
Q Consensus        65 g~~~~a~~l~~~m~~~~~------------------------~~~~~~~------------------~~~~~~~~~~~~~  102 (153)
                      |++++|.+.|++..+..-                        .|+....                  ..+....... ..
T Consensus        93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~  171 (258)
T 3uq3_A           93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE  171 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cc
Confidence            999999999999887431                        2221111                  1122222211 22


Q ss_pred             cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      +..+|..+...+.+.|++++|...|+...+.. ..+...+..+-..+.+.
T Consensus       172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~  220 (258)
T 3uq3_A          172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV  220 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence            45566667777777777777777777665543 22345555555554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.66  E-value=2.4e-06  Score=60.58  Aligned_cols=144  Identities=16%  Similarity=0.113  Sum_probs=96.7

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      +...|++++|...|....+..  |+ ..++..+           +|...++++..... .+..+|..+...+.+.|++++
T Consensus       213 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~  289 (388)
T 1w3b_A          213 LKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAE  289 (388)
T ss_dssp             HHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence            345678888888888877653  43 4444443           77888888776532 245678888888888888888


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHH-------------HHHHH--cCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           70 VMELLNEAIERGVTPNVVTLIHL-------------HNVID--IGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~~~~-------------~~~~~--~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      |.+.|+++.+.. +.+..++..+             ....+  ....| +..++..+...+.+.|++++|...|+++.+.
T Consensus       290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          290 AEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            888888887653 3333333111             11111  12223 5678999999999999999999999999874


Q ss_pred             CCCC-CHHHHHHHHHHhhc
Q 047010          134 GKIP-SRTLYDTLIKKLDQ  151 (153)
Q Consensus       134 ~v~p-~~~~~~~li~~~~~  151 (153)
                        .| +...|..+-..+.+
T Consensus       369 --~p~~~~a~~~lg~~~~~  385 (388)
T 1w3b_A          369 --SPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             --CTTCHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHhHHHHHHH
Confidence              34 45566555555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.64  E-value=2.4e-06  Score=61.54  Aligned_cols=146  Identities=12%  Similarity=0.017  Sum_probs=108.4

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|..+|+.+.+.. +.+...|..+           +|...++++.+.. +.+...|..+..+|.+.|++++|
T Consensus        36 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A  113 (450)
T 2y4t_A           36 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEA  113 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence            457899999999999998753 3345555544           8889998888764 34678999999999999999999


Q ss_pred             HHHHHHHHHcCCCchHH----HH-----------------------------HHHHHHHHcCCCCcHhhHHHHHHHHHcc
Q 047010           71 MELLNEAIERGVTPNVV----TL-----------------------------IHLHNVIDIGHIPRTITFNNVIQALCGV  117 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~----~~-----------------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~  117 (153)
                      .+.|+++.+..  |+..    .+                             ..+..+... ...+..++..+...|.+.
T Consensus       114 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~  190 (450)
T 2y4t_A          114 EDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIKE  190 (450)
T ss_dssp             HHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHC
Confidence            99999998754  3322    11                             122222221 234677889999999999


Q ss_pred             CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          118 GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       118 g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      |++++|...|+++.+.. ..+..++..+...+.+.|
T Consensus       191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG  225 (450)
T ss_dssp             TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            99999999999887643 346778888888877654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.60  E-value=7.5e-06  Score=57.48  Aligned_cols=146  Identities=10%  Similarity=0.034  Sum_probs=95.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +.+.|++++|..+|+.+.+.. +.+...|..+           .|...+++..+.. +.+...|..+...|.+.|++++|
T Consensus        75 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A  152 (365)
T 4eqf_A           75 RLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDA  152 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHH
Confidence            356789999999999998864 3345555544           7888888877763 34578899999999999999999


Q ss_pred             HHHHHHHHHcCCCchHH------------------HH----------HHHHHHHHcCCC-CcHhhHHHHHHHHHccCcHH
Q 047010           71 MELLNEAIERGVTPNVV------------------TL----------IHLHNVIDIGHI-PRTITFNNVIQALCGVGKID  121 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~------------------~~----------~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~  121 (153)
                      .+.|++..+..  |+..                  .+          ..+......... ++..+|..+...+.+.|+++
T Consensus       153 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~  230 (365)
T 4eqf_A          153 CEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN  230 (365)
T ss_dssp             HHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence            99999987642  2110                  00          223333332211 24566677777777777777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          122 KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       122 ~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      +|...|++..+.. ..+..+|..+-..|.+.
T Consensus       231 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  260 (365)
T 4eqf_A          231 RAIDAFNAALTVR-PEDYSLWNRLGATLANG  260 (365)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            7777777665532 22455666666555544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.58  E-value=7.4e-06  Score=58.92  Aligned_cols=145  Identities=8%  Similarity=0.047  Sum_probs=92.5

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...|+.+.+.. +.+...+..+           +|.+.++++.+.. +.+..+|..+...|.+.|++++|
T Consensus       153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  230 (450)
T 2y4t_A          153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELS  230 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            345688888888888887753 2344444444           6677777766542 34677888888888888888888


Q ss_pred             HHHHHHHHHcCCCchHHH-H-----------------------------HHHHHHHHcCCCCc-----HhhHHHHHHHHH
Q 047010           71 MELLNEAIERGVTPNVVT-L-----------------------------IHLHNVIDIGHIPR-----TITFNNVIQALC  115 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~-~-----------------------------~~~~~~~~~~~~~~-----~~~~~~li~~~~  115 (153)
                      .+.|+++.+..  |+... +                             ..+..+..  ..|+     ...|..+...+.
T Consensus       231 ~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~  306 (450)
T 2y4t_A          231 LSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFS  306 (450)
T ss_dssp             HHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHH
Confidence            88888887543  22111 1                             12222222  2233     346777778888


Q ss_pred             ccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          116 GVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       116 ~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      +.|++++|...++.+.+.. ..+...|..+..+|.+.|
T Consensus       307 ~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~  343 (450)
T 2y4t_A          307 KDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE  343 (450)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence            8888888888888776542 235677777777666543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.55  E-value=2e-05  Score=55.12  Aligned_cols=148  Identities=11%  Similarity=0.024  Sum_probs=97.8

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...|+.+.+.. +.+...|..+           .|...+++..+.. +.+..+|..+...|.+.|++++|
T Consensus        74 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A  151 (368)
T 1fch_A           74 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQA  151 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            456799999999999999864 3344455444           7888888877764 34778899999999999999999


Q ss_pred             HHHHHHHHHcCCCchHH-------------------------------HHHHHHHHHHcCCC-CcHhhHHHHHHHHHccC
Q 047010           71 MELLNEAIERGVTPNVV-------------------------------TLIHLHNVIDIGHI-PRTITFNNVIQALCGVG  118 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g  118 (153)
                      .+.|+++.+..-.....                               ....+..+...... ++..++..+...+.+.|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g  231 (368)
T 1fch_A          152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG  231 (368)
T ss_dssp             HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence            99999987753211000                               00222333322221 14667777777777778


Q ss_pred             cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       119 ~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ++++|...|++..+.. ..+...+..+...+.+.
T Consensus       232 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~  264 (368)
T 1fch_A          232 EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANG  264 (368)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHc
Confidence            8888887777776542 22455666666555543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.53  E-value=6.3e-06  Score=51.75  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ...|++++|...++.+.+.. +.+...+..+           .|...+++..+.. +.+...|..+...+...|++++|.
T Consensus        19 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~   96 (186)
T 3as5_A           19 AKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAV   96 (186)
T ss_dssp             HHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence            45678888888888776542 2233444333           7777777766652 346677888888888888888888


Q ss_pred             HHHHHHHHc
Q 047010           72 ELLNEAIER   80 (153)
Q Consensus        72 ~l~~~m~~~   80 (153)
                      +.+++..+.
T Consensus        97 ~~~~~~~~~  105 (186)
T 3as5_A           97 PLLIKVAEA  105 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888887765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.52  E-value=2.7e-05  Score=51.11  Aligned_cols=144  Identities=12%  Similarity=0.116  Sum_probs=102.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc------
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV------   64 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~------   64 (153)
                      +.+.|++++|...|+...+.. +.+...+..+           +|...+++..+.. +.+...|..+-..+.+.      
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~   92 (217)
T 2pl2_A           15 LYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAED   92 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhh
Confidence            456789999999999988753 2334444433           7788888777663 23567888888889999      


Q ss_pred             -----CCHHHHHHHHHHHHHcCCCch-HHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHH
Q 047010           65 -----GRSNEVMELLNEAIERGVTPN-VVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKID  121 (153)
Q Consensus        65 -----g~~~~a~~l~~~m~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  121 (153)
                           |++++|.+.|++..+..  |+ ...+                 ..+.+..+..  .+...+..+-..+...|+++
T Consensus        93 ~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A           93 RERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHH
T ss_pred             hcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHH
Confidence                 99999999999987753  32 2222                 3444444444  67788889999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          122 KALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       122 ~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      +|...|++..+.. +-+...+..+-..+.+.
T Consensus       169 ~A~~~~~~al~~~-P~~~~~~~~la~~~~~~  198 (217)
T 2pl2_A          169 EALAQYAKALEQA-PKDLDLRVRYASALLLK  198 (217)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence            9999999987653 22456666666665544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.50  E-value=1.4e-05  Score=52.59  Aligned_cols=45  Identities=9%  Similarity=0.104  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      .|...+++..... +.+...|..+...|.+.|++++|.+.+++..+
T Consensus        75 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  119 (243)
T 2q7f_A           75 RALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR  119 (243)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4444444444332 12344444445555555555555555555444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.49  E-value=7.9e-06  Score=56.05  Aligned_cols=131  Identities=15%  Similarity=0.162  Sum_probs=97.4

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +...|++++|...++.+.+.. +.+...+..+           .|...+++..+.. +.+...|..+...+.+.|++++|
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence            556788899999999988764 2244444444           7788888777653 34578899999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC-----------CH
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP-----------SR  139 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p-----------~~  139 (153)
                      .+.|++..+..  |+                 +..+|..+...+.+.|++++|...|++..+..-..           +.
T Consensus       226 ~~~~~~a~~~~--~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  286 (327)
T 3cv0_A          226 LDAYNRALDIN--PG-----------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR  286 (327)
T ss_dssp             HHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred             HHHHHHHHHcC--CC-----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence            99999987643  21                 34588899999999999999999999886543221           36


Q ss_pred             HHHHHHHHHhhcCC
Q 047010          140 TLYDTLIKKLDQQP  153 (153)
Q Consensus       140 ~~~~~li~~~~~~g  153 (153)
                      ..+..+...+.+.|
T Consensus       287 ~~~~~l~~~~~~~g  300 (327)
T 3cv0_A          287 SMWDFFRMLLNVMN  300 (327)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcC
Confidence            67777777766554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.46  E-value=8.1e-06  Score=53.75  Aligned_cols=130  Identities=15%  Similarity=0.098  Sum_probs=98.8

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...++...+.. +.+...+..+           .|...+++..+.. +.+...|..+...+.+.|++++|
T Consensus        67 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A  144 (243)
T 2q7f_A           67 LSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA  144 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence            456789999999999988763 2234444433           7888888877764 34677899999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~  150 (153)
                      .+.+++..+..  |                 .+...+..+...+.+.|++++|...|++..+.. ..+..++..+...+.
T Consensus       145 ~~~~~~~~~~~--~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~  204 (243)
T 2q7f_A          145 LPYLQRAVELN--E-----------------NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYA  204 (243)
T ss_dssp             HHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--C-----------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            99999987653  2                 134588899999999999999999999987653 235667777777776


Q ss_pred             cCC
Q 047010          151 QQP  153 (153)
Q Consensus       151 ~~g  153 (153)
                      +.|
T Consensus       205 ~~~  207 (243)
T 2q7f_A          205 YKE  207 (243)
T ss_dssp             HTT
T ss_pred             Hcc
Confidence            544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.45  E-value=3.2e-05  Score=51.28  Aligned_cols=139  Identities=12%  Similarity=0.052  Sum_probs=97.5

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~   69 (153)
                      |.+.|++++|...++.+.+.. +.+...+..+           +|.+.+++....+..| +...|..+...|.+.|++++
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  159 (252)
T 2ho1_A           81 FQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ  159 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence            456789999999999988764 2244444443           7888888887743344 56778889999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      |.+.|++..+..-. +...+                 ..+..... ....+...+..+...+.+.|++++|...++.+.+
T Consensus       160 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          160 AKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQ-GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            99999998776422 22222                 22222222 2234667888999999999999999999999977


Q ss_pred             CCCCCCHHHHHHH
Q 047010          133 HGKIPSRTLYDTL  145 (153)
Q Consensus       133 ~~v~p~~~~~~~l  145 (153)
                      ..  |+...+..+
T Consensus       238 ~~--p~~~~~~~~  248 (252)
T 2ho1_A          238 LY--PGSLEYQEF  248 (252)
T ss_dssp             HC--TTSHHHHHH
T ss_pred             HC--CCCHHHHHH
Confidence            53  554444433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.44  E-value=2e-05  Score=57.42  Aligned_cols=77  Identities=13%  Similarity=0.085  Sum_probs=65.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +.+.|++++|...|..+.+..  |+...|..+           .|...+++..+.. +.+...|..+..+|.+.|++++|
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   92 (514)
T 2gw1_A           16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA   92 (514)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence            456899999999999999975  787777665           8888888887764 34668899999999999999999


Q ss_pred             HHHHHHHHHcC
Q 047010           71 MELLNEAIERG   81 (153)
Q Consensus        71 ~~l~~~m~~~~   81 (153)
                      .+.|+++.+.+
T Consensus        93 ~~~~~~~~~~~  103 (514)
T 2gw1_A           93 MFDLSVLSLNG  103 (514)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhcC
Confidence            99999987654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.42  E-value=6.2e-06  Score=57.91  Aligned_cols=98  Identities=14%  Similarity=0.014  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHH
Q 047010           34 EAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQ  112 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~-~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  112 (153)
                      +|...+++..+.... ++..+|..+-..|.+.|++++|.+.|++..+..  |                 .+..+|..+..
T Consensus       195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-----------------~~~~~~~~l~~  255 (365)
T 4eqf_A          195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--P-----------------EDYSLWNRLGA  255 (365)
T ss_dssp             HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-----------------CCHHHHHHHHH
Confidence            566666666555322 156677777777777777777777777766542  2                 13446777777


Q ss_pred             HHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          113 ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       113 ~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      .|.+.|++++|...|++..+.. ..+...+..+-..|.+
T Consensus       256 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  293 (365)
T 4eqf_A          256 TLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN  293 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence            7777777777777777766542 1235555555555544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.37  E-value=3e-05  Score=54.20  Aligned_cols=127  Identities=13%  Similarity=0.044  Sum_probs=76.1

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhch-------------------HH-------HHHHHHHHHHHcCCCc-cHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYT-------------------IL-------EAYEMLMNVKNDGLKP-DVYTY   54 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------------~l-------~a~~~~~~m~~~g~~~-~~~t~   54 (153)
                      |...|++++|...+..+.+..- .+...+.                   .+       +|...+++........ +..+|
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  220 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ  220 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence            3456778888888887777531 1111211                   01       6677777776654322 57888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010           55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus        55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      ..+...|.+.|++++|.+.|++..+..  |+                 +..+|..+...+.+.|++++|...|++..+..
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~~--~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSVR--PN-----------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            888889999999999999998887653  21                 22355555555666666666666665554432


Q ss_pred             CCCCHHHHHHHHHHh
Q 047010          135 KIPSRTLYDTLIKKL  149 (153)
Q Consensus       135 v~p~~~~~~~li~~~  149 (153)
                       ..+...+..+-..+
T Consensus       282 -~~~~~~~~~l~~~~  295 (368)
T 1fch_A          282 -PGYIRSRYNLGISC  295 (368)
T ss_dssp             -TTCHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHH
Confidence             12334444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.36  E-value=2.8e-05  Score=45.43  Aligned_cols=97  Identities=18%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      .|.+.+.+..... +.+...|..+...+.+.|++++|..+|+++.+..  |                 .+..++..+...
T Consensus        27 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~-----------------~~~~~~~~la~~   86 (125)
T 1na0_A           27 EAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-----------------NNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--C-----------------ccHHHHHHHHHH
Confidence            4455555544432 2356788888999999999999999999987653  2                 234578889999


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      +...|++++|...|+++.+.. ..+...+..+-..+.+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence            999999999999999987653 2234455555444433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.35  E-value=5e-05  Score=52.00  Aligned_cols=99  Identities=11%  Similarity=0.020  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...+++..+.. +.+...+..+...|.+.|++++|.+.+++..+..  |                 .+..+|..+...
T Consensus       156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~-----------------~~~~~~~~l~~~  215 (327)
T 3cv0_A          156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--P-----------------DDAQLWNKLGAT  215 (327)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-----------------CcHHHHHHHHHH
Confidence            6666677666553 2367788888888888888888888888877642  2                 234588999999


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      +...|++++|...|++..+.. ..+...+..+...+.+.|
T Consensus       216 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          216 LANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence            999999999999999987653 235677777777766544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.32  E-value=2.5e-05  Score=52.31  Aligned_cols=110  Identities=11%  Similarity=-0.050  Sum_probs=74.6

Q ss_pred             cccCChHHHHHHHHHHHHCCCCC---ChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHP---NVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN   68 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~   68 (153)
                      ...|++++|...|+.+.+.....   +...|..+           +|...+++..... +.+...|..+-..|.+.|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence            35688999999999998863211   22333333           7888888877763 236788999999999999999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      +|.+.|++..+..  |+                 +..+|..+...|.+.|++++|...|+++.+
T Consensus        95 ~A~~~~~~al~~~--~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  139 (275)
T 1xnf_A           95 AAYEAFDSVLELD--PT-----------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQ  139 (275)
T ss_dssp             HHHHHHHHHHHHC--TT-----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC--cc-----------------ccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999988753  21                 223455555555555555555555555544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.32  E-value=0.00013  Score=46.19  Aligned_cols=128  Identities=18%  Similarity=0.129  Sum_probs=69.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...|+...+.. +-+...|..+           .+...+....... +.+...+..+-..+...++++.|
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a   92 (184)
T 3vtx_A           15 KRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAA   92 (184)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHH
Confidence            345688889999988888753 2223333333           4555555544432 22344555555556666666666


Q ss_pred             HHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           71 MELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+.+.+..+..-. +...+                 ..+....+. ...+..+|..+-..|.+.|++++|...|++..+.
T Consensus        93 ~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A           93 IDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            6666655443211 11111                 111111111 1124456777777777888888888888777653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.30  E-value=1.3e-06  Score=63.58  Aligned_cols=42  Identities=12%  Similarity=0.055  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      .|..+.+++.+.|++++|.+.++++      .+..+|..++.+|...|
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~  191 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK  191 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcC
Confidence            5666666666666666666666665      24566666666665543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.30  E-value=5.9e-05  Score=47.17  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=87.7

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...++...+.. +.+...+..+           .|...+++..+.. +.+...|..+...+.+.|++++|
T Consensus        52 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A  129 (186)
T 3as5_A           52 YVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEA  129 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHH
Confidence            456799999999999998863 2334444433           7788888877663 34678899999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+.+++..+..  |                 .+...+..+...+...|++++|...++...+.
T Consensus       130 ~~~~~~~~~~~--~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          130 IDSFKIALGLR--P-----------------NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--c-----------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            99999987753  2                 13458889999999999999999999988653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.29  E-value=8.5e-05  Score=43.79  Aligned_cols=99  Identities=19%  Similarity=0.178  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...+.++.+.. +.+...|..+...+...|++++|.++++++.+.+  |                 .+...+..+...
T Consensus        19 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-----------------~~~~~~~~l~~~   78 (136)
T 2fo7_A           19 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-----------------RSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--C-----------------CchHHHHHHHHH
Confidence            6777777776653 3467788889999999999999999999987653  2                 233478888999


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      +...|++++|...++++.+.. ..+...+..+...+.+.|
T Consensus        79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  117 (136)
T 2fo7_A           79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG  117 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHc
Confidence            999999999999999987754 235667777777766544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.29  E-value=4.6e-05  Score=52.26  Aligned_cols=45  Identities=13%  Similarity=0.044  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      .|...+++..+.. +.+...|..+...+.+.|++++|.+.+++..+
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            4444444444332 22344555555555555555555555555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.29  E-value=0.00025  Score=48.49  Aligned_cols=145  Identities=9%  Similarity=-0.033  Sum_probs=93.4

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG-RSNEV   70 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g-~~~~a   70 (153)
                      ...|++++|..+|+.+.+..- .+...+..+           ++...+.++.+.. +.+...|..+-..+...| ++++|
T Consensus        33 ~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A  110 (330)
T 3hym_B           33 YYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHA  110 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHH
Confidence            456899999999999887641 222222111           7777887777653 235677888888899999 89999


Q ss_pred             HHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           71 MELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+.|++..+..-. +...+                 ..+....... ..+...+..+...+...|++++|...+++..+.
T Consensus       111 ~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  188 (330)
T 3hym_B          111 RRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI  188 (330)
T ss_dssp             HHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            9999988765422 11222                 2222222222 123456666888888888888888888888764


Q ss_pred             CCCCCHHHHHHHHHHhhcC
Q 047010          134 GKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       134 ~v~p~~~~~~~li~~~~~~  152 (153)
                      . ..+...+..+...+.+.
T Consensus       189 ~-~~~~~~~~~l~~~~~~~  206 (330)
T 3hym_B          189 A-PEDPFVMHEVGVVAFQN  206 (330)
T ss_dssp             C-TTCHHHHHHHHHHHHHT
T ss_pred             C-CCChHHHHHHHHHHHHc
Confidence            3 23456666666665544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.24  E-value=0.0002  Score=49.50  Aligned_cols=146  Identities=11%  Similarity=0.004  Sum_probs=94.8

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +.+.|++++|...|+...+.. +.+...+..+           .|...+++..+.. +.+...|..+-..|.+.|++++|
T Consensus        13 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A   90 (359)
T 3ieg_A           13 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEA   90 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHH
Confidence            456789999999999988753 2334444433           7788888777653 23567888899999999999999


Q ss_pred             HHHHHHHHHcCCC--chHHHH-----------------------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCc
Q 047010           71 MELLNEAIERGVT--PNVVTL-----------------------------IHLHNVIDIGHIPRTITFNNVIQALCGVGK  119 (153)
Q Consensus        71 ~~l~~~m~~~~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  119 (153)
                      .+.|++..+..-.  .+...+                             ..+...... ...+...+..+...+...|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (359)
T 3ieg_A           91 EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELRELRAECFIKEGE  169 (359)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHCCC
Confidence            9999988765320  111111                             111112211 22355677788888888888


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          120 IDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       120 ~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      +++|...+++..+.. ..+...+..+-..+.+
T Consensus       170 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~  200 (359)
T 3ieg_A          170 PRKAISDLKAASKLK-SDNTEAFYKISTLYYQ  200 (359)
T ss_dssp             HHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            888888888876643 3355566655555543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.21  E-value=7.6e-06  Score=59.63  Aligned_cols=29  Identities=17%  Similarity=0.086  Sum_probs=6.7

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEA   77 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m   77 (153)
                      |+..+|+.+-+.|...|.+++|..+|..+
T Consensus       120 pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a  148 (449)
T 1b89_A          120 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV  148 (449)
T ss_dssp             C----------------CTTTHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            44455555555555555555555555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.20  E-value=5.6e-05  Score=52.05  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=79.5

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhh------chHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTT------YTIL--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS   67 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~l--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~   67 (153)
                      |.+.|++++|...|+.+.+..  |+...      |..+        +|..+|+++... .+.+...|+.+-.++.+.|++
T Consensus       140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCH
Confidence            346688888888888887763  54321      1111        677778777776 345777888888888888888


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH-HHHHHHHHHHC
Q 047010           68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK-ALLLLFLMYEH  133 (153)
Q Consensus        68 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~  133 (153)
                      ++|++.|++..+..  |+                 +..++..++..+...|+.++ +.++++++.+.
T Consensus       217 ~eA~~~l~~al~~~--p~-----------------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          217 EAAEGVLQEALDKD--SG-----------------HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            88888888876642  22                 34588889999999999876 67898888764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.19  E-value=7.6e-05  Score=44.83  Aligned_cols=72  Identities=11%  Similarity=0.027  Sum_probs=59.1

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .+...|..+-.+|.+.|++++|.+.|++..+..  |+                 +...|..+-.++...|++++|...|+
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~  105 (126)
T 4gco_A           45 ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SK-----------------FIKGYIRKAACLVAMREWSKAQRAYE  105 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hh-----------------hhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            467889999999999999999999999987753  22                 34588899999999999999999999


Q ss_pred             HHHHCCCCCCHHH
Q 047010          129 LMYEHGKIPSRTL  141 (153)
Q Consensus       129 ~m~~~~v~p~~~~  141 (153)
                      +..+.  .|+...
T Consensus       106 ~al~l--~P~~~~  116 (126)
T 4gco_A          106 DALQV--DPSNEE  116 (126)
T ss_dssp             HHHHH--CTTCHH
T ss_pred             HHHHH--CcCCHH
Confidence            98774  354433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.17  E-value=3.2e-05  Score=52.61  Aligned_cols=115  Identities=17%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             ccccCChHHHHHHHHHHHHC-------CCCCChhhchHH-----------HHHHHHHHHHHc------C-CCccHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDN-------GYHPNVTTYTIL-----------EAYEMLMNVKND------G-LKPDVYTYTA   56 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l-----------~a~~~~~~m~~~------g-~~~~~~t~~~   56 (153)
                      |...|++++|..++..+.+.       ..+.....+..+           +|...+.+....      + .......|..
T Consensus        37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  116 (311)
T 3nf1_A           37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN  116 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            45679999999999998873       112222333333           666666655433      2 2234578899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           57 VMDGFCKVGRSNEVMELLNEAIER------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        57 ll~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      +-..|...|++++|.+.|++..+.      +-.|+                 ....+..+...+...|++++|..+|++.
T Consensus       117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-----------------VAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999998764      22222                 2357888999999999999999999988


Q ss_pred             HHC
Q 047010          131 YEH  133 (153)
Q Consensus       131 ~~~  133 (153)
                      .+.
T Consensus       180 ~~~  182 (311)
T 3nf1_A          180 LEI  182 (311)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.16  E-value=0.00014  Score=53.37  Aligned_cols=125  Identities=13%  Similarity=0.075  Sum_probs=80.1

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ...|++++|...|....+.  .|+...|..+           .|...+.+..... +.+..+|..+-..|.+.|++++|.
T Consensus       254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  330 (537)
T 3fp2_A          254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK  330 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence            4568889999999999886  4555555544           8888888877664 236778999999999999999999


Q ss_pred             HHHHHHHHcCCC-chHHHH---------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           72 ELLNEAIERGVT-PNVVTL---------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        72 ~l~~~m~~~~~~-~~~~~~---------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      +.|++..+..-. +.....               ..+...... ...+...|..+...+...|++++|...|+...
T Consensus       331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  405 (537)
T 3fp2_A          331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK  405 (537)
T ss_dssp             HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999998775421 111100               111112211 11233455556666666666666666666554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.14  E-value=0.00052  Score=47.29  Aligned_cols=138  Identities=9%  Similarity=-0.002  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCcc-H-HHHHHHHHHHHhcCCHHHHHHHH
Q 047010            9 FEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPD-V-YTYTAVMDGFCKVGRSNEVMELL   74 (153)
Q Consensus         9 ~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~-~-~t~~~ll~~~~~~g~~~~a~~l~   74 (153)
                      ++|..+|+...+. +.|+ ...|..+           .|.++|++..+.  .|+ . ..|..+...+.+.|++++|.++|
T Consensus        81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~  157 (308)
T 2ond_A           81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence            8899999998873 2344 3355444           778888888774  343 3 38999999999999999999999


Q ss_pred             HHHHHcCCCchHHHH------------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-C
Q 047010           75 NEAIERGVTPNVVTL------------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-K  135 (153)
Q Consensus        75 ~~m~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-v  135 (153)
                      ++..+..- ++...+                  .++....+. ..-+...|..++..+.+.|++++|..+|++..+.. +
T Consensus       158 ~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l  235 (308)
T 2ond_A          158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence            99877532 222222                  111111111 12256788999999999999999999999998863 4


Q ss_pred             CC--CHHHHHHHHHHhhc
Q 047010          136 IP--SRTLYDTLIKKLDQ  151 (153)
Q Consensus       136 ~p--~~~~~~~li~~~~~  151 (153)
                      .|  ....|..++....+
T Consensus       236 ~p~~~~~l~~~~~~~~~~  253 (308)
T 2ond_A          236 PPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            55  35566666555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.12  E-value=0.0002  Score=46.19  Aligned_cols=122  Identities=15%  Similarity=0.052  Sum_probs=86.4

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +.+.|++++|...|...    +.|+...|..+           +|...+++..... +.+...|..+-.+|.+.|++++|
T Consensus        16 ~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A   90 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA   90 (213)
T ss_dssp             HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHH
Confidence            34678999999999876    35666666555           7788888777653 34678899999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHcC--CCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHNVIDIG--HIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      .+.|++..+..-......      ....+  ..| +...+..+-..+.+.|++++|...|+...+..
T Consensus        91 ~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           91 IKDLKEALIQLRGNQLID------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHHHHHHTTTTCSEEE------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCccHHH------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            999999877431100000      00000  001 22578888999999999999999999987754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.12  E-value=0.00021  Score=46.16  Aligned_cols=140  Identities=8%  Similarity=-0.063  Sum_probs=83.2

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~   69 (153)
                      ...|++++|...++...+.. +.+...+..+            +|...+++..+.+..| +...|..+...+.+.|++++
T Consensus        53 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  131 (225)
T 2vq2_A           53 QYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL  131 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence            45677777777777776643 1223333222            5666666666532223 34667777777777777777


Q ss_pred             HHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      |.+.|++..+..-. +...+                 ..+..........+...+..+...+...|+.+.|..+++.+.+
T Consensus       132 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          132 AEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            77777776654321 12222                 2222222222214566788888888999999999999999875


Q ss_pred             CCCCCCHHHHHHHH
Q 047010          133 HGKIPSRTLYDTLI  146 (153)
Q Consensus       133 ~~v~p~~~~~~~li  146 (153)
                      .  .|+......++
T Consensus       211 ~--~p~~~~~~~~l  222 (225)
T 2vq2_A          211 N--FPYSEELQTVL  222 (225)
T ss_dssp             H--CTTCHHHHHHH
T ss_pred             h--CCCCHHHHHHh
Confidence            4  36555544443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.10  E-value=0.00016  Score=47.41  Aligned_cols=121  Identities=15%  Similarity=0.055  Sum_probs=88.1

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...|....+..-+++...+..+           +|...+++...... .+...|..+-..|.+.|++++|
T Consensus        17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A   95 (228)
T 4i17_A           17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRDMKNNQEY   95 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcccHHHH
Confidence            34679999999999999887533555555434           78888888776532 2567888999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHH-HHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010           71 MELLNEAIERGVTPNVVT-LIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS  138 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~  138 (153)
                      .+.|++..+..  |+... ...+           ...|..+-..+...|++++|...|++..+.  .|+
T Consensus        96 ~~~~~~al~~~--p~~~~~~~~~-----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~  149 (228)
T 4i17_A           96 IATLTEGIKAV--PGNATIEKLY-----------AIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK  149 (228)
T ss_dssp             HHHHHHHHHHS--TTCHHHHHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred             HHHHHHHHHHC--CCcHHHHHHH-----------HHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence            99999987753  22110 0000           025777778888999999999999998764  465

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.10  E-value=0.00031  Score=46.93  Aligned_cols=79  Identities=13%  Similarity=0.084  Sum_probs=59.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSN   68 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~   68 (153)
                      +.+.|++++|...|....+.. +.+...+..+           +|...+++.......+  ....|..+-..|.+.|+++
T Consensus        13 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~   91 (272)
T 3u4t_A           13 LFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS   91 (272)
T ss_dssp             HHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence            457899999999999998864 2223344433           8888888887743222  2345889999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 047010           69 EVMELLNEAIERG   81 (153)
Q Consensus        69 ~a~~l~~~m~~~~   81 (153)
                      +|.+.|++..+..
T Consensus        92 ~A~~~~~~a~~~~  104 (272)
T 3u4t_A           92 LAIQQYQAAVDRD  104 (272)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.10  E-value=6.9e-05  Score=50.09  Aligned_cols=114  Identities=21%  Similarity=0.158  Sum_probs=82.2

Q ss_pred             ccccCChHHHHHHHHHHHHC------CCCCC-hhhchHH-----------HHHHHHHHHHHc------C-CCccHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDN------GYHPN-VTTYTIL-----------EAYEMLMNVKND------G-LKPDVYTYTA   56 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~------~~~~~-~~~~~~l-----------~a~~~~~~m~~~------g-~~~~~~t~~~   56 (153)
                      |...|++++|...+....+.      +-.|. ...+..+           +|.+.+.+....      . .+.....|..
T Consensus        53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  132 (283)
T 3edt_B           53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN  132 (283)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            45678999999999988874      21222 2233333           666666655433      1 1234678899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           57 VMDGFCKVGRSNEVMELLNEAIER------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        57 ll~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      +-..|...|++++|.+.|++..+.      +-.|+                 ...++..+...|...|++++|...+++.
T Consensus       133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN-----------------VAKTKNNLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH-----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999998764      11222                 2357889999999999999999999888


Q ss_pred             HH
Q 047010          131 YE  132 (153)
Q Consensus       131 ~~  132 (153)
                      .+
T Consensus       196 l~  197 (283)
T 3edt_B          196 LT  197 (283)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.08  E-value=0.00033  Score=50.97  Aligned_cols=143  Identities=9%  Similarity=0.007  Sum_probs=84.4

Q ss_pred             ccCChHHHHHHHHHHHH-----CCCCCCh--------hhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFD-----NGYHPNV--------TTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMD   59 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~-----~~~~~~~--------~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~   59 (153)
                      +.|++++|..+|+.+.+     ..-.|+.        ..+..+           .|...+++..+....  ...|..+..
T Consensus       201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~  278 (514)
T 2gw1_A          201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMAL  278 (514)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHH
Confidence            47888888888888877     3112221        222222           777777777666433  777777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHH
Q 047010           60 GFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDK  122 (153)
Q Consensus        60 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  122 (153)
                      .|.+.|++++|.+.+++..+..-. +...+                 ..+....... ..+...+..+...+...|++++
T Consensus       279 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  356 (514)
T 2gw1_A          279 IMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDD  356 (514)
T ss_dssp             HHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHH
Confidence            888888888888888877664321 11122                 2222222221 2245567777777777777777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       123 a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      |...++.+.+.. ..+...+..+-..+.+
T Consensus       357 A~~~~~~~~~~~-~~~~~~~~~la~~~~~  384 (514)
T 2gw1_A          357 CETLFSEAKRKF-PEAPEVPNFFAEILTD  384 (514)
T ss_dssp             HHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-ccCHHHHHHHHHHHHH
Confidence            777777776532 1233455555544443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.07  E-value=0.00036  Score=54.12  Aligned_cols=126  Identities=14%  Similarity=0.115  Sum_probs=94.9

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      |.+.|++++|...|+...+.  .|+ ...|..+           +|.+.+++..+.. +-+...|..+-.+|.+.|++++
T Consensus        19 ~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~   95 (723)
T 4gyw_A           19 KREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQG   95 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            45679999999999999885  354 3445444           8888888777653 2356889999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKK  148 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~  148 (153)
                      |++.|++..+.  .|+                 +...|+.+-..|...|++++|...|++..+..  | +...+..+...
T Consensus        96 A~~~~~kAl~l--~P~-----------------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~  154 (723)
T 4gyw_A           96 ALQCYTRAIQI--NPA-----------------FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHC  154 (723)
T ss_dssp             HHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhH
Confidence            99999998764  232                 34578888889999999999999999887643  4 35566666655


Q ss_pred             hhc
Q 047010          149 LDQ  151 (153)
Q Consensus       149 ~~~  151 (153)
                      +.+
T Consensus       155 l~~  157 (723)
T 4gyw_A          155 LQI  157 (723)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.05  E-value=0.00014  Score=47.97  Aligned_cols=141  Identities=12%  Similarity=0.021  Sum_probs=89.5

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH----HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL----EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEA   77 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m   77 (153)
                      |.+.|++++|...|....+.  .|+...+..+    .+...+.+..... +.+...|..+-..+.+.|++++|.+.|++.
T Consensus        89 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  165 (258)
T 3uq3_A           89 YHKLGDLKKTIEYYQKSLTE--HRTADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEM  165 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhc--CchhHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45678999999999998885  3555555444    5566666655542 224456677777777777777777777777


Q ss_pred             HHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC----CCC
Q 047010           78 IERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH----GKI  136 (153)
Q Consensus        78 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~v~  136 (153)
                      .+..-. +...+                 ..+...... ...+...|..+...+.+.|++++|...+++..+.    +..
T Consensus       166 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  243 (258)
T 3uq3_A          166 IKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG  243 (258)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCC
Confidence            654321 22222                 122222221 1234678999999999999999999999988643    233


Q ss_pred             CCHHHHHHHHH
Q 047010          137 PSRTLYDTLIK  147 (153)
Q Consensus       137 p~~~~~~~li~  147 (153)
                      |+.......+.
T Consensus       244 p~~~~~~~~l~  254 (258)
T 3uq3_A          244 SSAREIDQLYY  254 (258)
T ss_dssp             TTHHHHHHHHH
T ss_pred             CchHHHHHHHH
Confidence            66555444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.04  E-value=0.00036  Score=44.04  Aligned_cols=78  Identities=14%  Similarity=0.102  Sum_probs=52.9

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...+........ -+...+..+           .+...+.+..... +.+...+..+-..|.+.|++++|
T Consensus        49 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A  126 (184)
T 3vtx_A           49 YMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKA  126 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhH
Confidence            4467888999998888877532 122222222           5566666555542 33567788888888899999999


Q ss_pred             HHHHHHHHHcC
Q 047010           71 MELLNEAIERG   81 (153)
Q Consensus        71 ~~l~~~m~~~~   81 (153)
                      .+.|++..+..
T Consensus       127 ~~~~~~~l~~~  137 (184)
T 3vtx_A          127 IEAYEKTISIK  137 (184)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99998887753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.04  E-value=0.00033  Score=41.08  Aligned_cols=97  Identities=13%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      .|...+++..... +.+...|..+-..+...|++++|.+.+++..+..  |+                 +...|..+...
T Consensus        30 ~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~~~~   89 (131)
T 2vyi_A           30 AAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PA-----------------YSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--cc-----------------CHHHHHHHHHH
Confidence            4444444444332 2366788888889999999999999999887652  22                 34478888889


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      +.+.|++++|...|++..+.. ..+...+..+...+.+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHH
Confidence            999999999999999987653 1245555555555543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.04  E-value=6.5e-05  Score=51.06  Aligned_cols=114  Identities=21%  Similarity=0.177  Sum_probs=82.5

Q ss_pred             ccccCChHHHHHHHHHHHHC------CCCCC-hhhchHH-----------HHHHHHHHHHHc------CCCc-cHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDN------GYHPN-VTTYTIL-----------EAYEMLMNVKND------GLKP-DVYTYTA   56 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~------~~~~~-~~~~~~l-----------~a~~~~~~m~~~------g~~~-~~~t~~~   56 (153)
                      |...|++++|...+....+.      +-.|. ...+..+           +|...+++..+.      +-.| ....|..
T Consensus        79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  158 (311)
T 3nf1_A           79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN  158 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            45678999999999988774      21222 2233333           666677665543      2223 4577889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           57 VMDGFCKVGRSNEVMELLNEAIER------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        57 ll~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      +-..|.+.|++++|.++|++..+.      +..|+                 ...++..+...|...|++++|...+++.
T Consensus       159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN-----------------VAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH-----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999998764      22222                 2357889999999999999999999988


Q ss_pred             HH
Q 047010          131 YE  132 (153)
Q Consensus       131 ~~  132 (153)
                      .+
T Consensus       222 l~  223 (311)
T 3nf1_A          222 LT  223 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.03  E-value=0.0012  Score=45.54  Aligned_cols=76  Identities=9%  Similarity=0.116  Sum_probs=46.4

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ...|++++|...++.+.+.. +.+...+..+           .|...+++..... +.+...|..+...|.+.|++++|.
T Consensus       131 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  208 (359)
T 3ieg_A          131 FDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSL  208 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence            34577777777777776643 2233333333           5666666665542 335566777777777777777777


Q ss_pred             HHHHHHHHc
Q 047010           72 ELLNEAIER   80 (153)
Q Consensus        72 ~l~~~m~~~   80 (153)
                      +.|++..+.
T Consensus       209 ~~~~~a~~~  217 (359)
T 3ieg_A          209 SEVRECLKL  217 (359)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            777766554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.00  E-value=0.00023  Score=47.51  Aligned_cols=147  Identities=13%  Similarity=-0.047  Sum_probs=92.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |...|++++|...|+...+.. +.+...|..+           +|...+++..... +.+...|..+-..|.+.|++++|
T Consensus        53 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A  130 (275)
T 1xnf_A           53 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLA  130 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHH
Confidence            456799999999999998864 2345555554           8888888887753 23578899999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHH---------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010           71 MELLNEAIERGVTPNVVTL---------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v  135 (153)
                      .+.|++..+..-.......               ..+...... ..++...+. +...+...++.++|...+....+...
T Consensus       131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~  208 (275)
T 1xnf_A          131 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNT  208 (275)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccc
Confidence            9999999875422111110               112122221 122333333 56666667777777777776654321


Q ss_pred             C--C-CHHHHHHHHHHhhcC
Q 047010          136 I--P-SRTLYDTLIKKLDQQ  152 (153)
Q Consensus       136 ~--p-~~~~~~~li~~~~~~  152 (153)
                      .  | +...+..+-..+.+.
T Consensus       209 ~~~~~~~~~~~~la~~~~~~  228 (275)
T 1xnf_A          209 SLAEHLSETNFYLGKYYLSL  228 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccHHHHHHHHHHHHc
Confidence            1  1 134555555555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.99  E-value=0.00018  Score=42.53  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      .|...+++..... +.+...|..+-..|...|++++|.+.+++..+..  |+                 +...|..+...
T Consensus        34 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------~~~~~~~la~~   93 (133)
T 2lni_A           34 QAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PT-----------------FIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC-----------------chHHHHHHHHH
Confidence            4455555544432 2367788888889999999999999999887753  21                 34578888889


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhh
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKKLD  150 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~~~  150 (153)
                      +.+.|++++|...|++..+..  | +...+..+-..+.
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence            999999999999999887643  3 2344444444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.97  E-value=0.00027  Score=51.95  Aligned_cols=141  Identities=9%  Similarity=-0.101  Sum_probs=97.6

Q ss_pred             ccccCCh-HHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----
Q 047010            2 YCNKNDF-FEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-----   64 (153)
Q Consensus         2 ~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~-----   64 (153)
                      |...|++ ++|...|+...+.. +-+...|..+           +|.+.+++..+..  |+...|..+-..|.+.     
T Consensus       112 ~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~  188 (474)
T 4abn_A          112 LNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSG  188 (474)
T ss_dssp             HTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCH
T ss_pred             HHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCCh
Confidence            4567899 99999999998863 2234555554           8888888887764  6678899999999999     


Q ss_pred             ----CCHHHHHHHHHHHHHcCCCchHHHH----HH---------------------HHHHHHcCCCC----cHhhHHHHH
Q 047010           65 ----GRSNEVMELLNEAIERGVTPNVVTL----IH---------------------LHNVIDIGHIP----RTITFNNVI  111 (153)
Q Consensus        65 ----g~~~~a~~l~~~m~~~~~~~~~~~~----~~---------------------~~~~~~~~~~~----~~~~~~~li  111 (153)
                          |++++|.+.|++..+..-. +...+    .+                     +.....  ..|    +...|..+-
T Consensus       189 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg  265 (474)
T 4abn_A          189 DEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK--VDRKASSNPDLHLNRA  265 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHH
Confidence                9999999999998875421 22222    11                     111111  134    667888888


Q ss_pred             HHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010          112 QALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~  149 (153)
                      ..|...|++++|...|++..+.. .-+...+..+-..+
T Consensus       266 ~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~  302 (474)
T 4abn_A          266 TLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLL  302 (474)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            99999999999999999887643 12334444444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.89  E-value=0.00063  Score=38.73  Aligned_cols=69  Identities=13%  Similarity=-0.007  Sum_probs=55.4

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc-CcHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV-GKIDKALLLL  127 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~  127 (153)
                      .+...|..+-..+.+.|++++|.+.|++..+..  |+               ..+...|..+...+.+. |++++|...+
T Consensus        38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~---------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~  100 (112)
T 2kck_A           38 EESKYWLMKGKALYNLERYEEAVDCYNYVINVI--ED---------------EYNKDVWAAKADALRYIEGKEVEAEIAE  100 (112)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CC---------------TTCHHHHHHHHHHHTTCSSCSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cc---------------cchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            356778888889999999999999999988753  21               01345888899999999 9999999999


Q ss_pred             HHHHHCC
Q 047010          128 FLMYEHG  134 (153)
Q Consensus       128 ~~m~~~~  134 (153)
                      +...+..
T Consensus       101 ~~~~~~~  107 (112)
T 2kck_A          101 ARAKLEH  107 (112)
T ss_dssp             HHHGGGC
T ss_pred             HHHhhcc
Confidence            9987654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.88  E-value=0.00013  Score=47.77  Aligned_cols=103  Identities=17%  Similarity=0.068  Sum_probs=69.4

Q ss_pred             CChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 047010            6 NDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMEL   73 (153)
Q Consensus         6 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l   73 (153)
                      |++++|...|+...+.  .|+ ...|..+           +|...+++..+..  .+...|..+-.+|...|++++|...
T Consensus        98 g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~  173 (217)
T 2pl2_A           98 GYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQ  173 (217)
T ss_dssp             HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHH
Confidence            8899999999998875  344 3344333           7888888887776  6788899999999999999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           74 LNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        74 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      |++..+..  |+                 +...+..+...+.+.|++++|...|++..
T Consensus       174 ~~~al~~~--P~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          174 YAKALEQA--PK-----------------DLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHS--TT-----------------CHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHhC--CC-----------------ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            99987752  32                 34588889999999999999999988754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.86  E-value=0.00034  Score=43.49  Aligned_cols=85  Identities=14%  Similarity=-0.029  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...|++..... +.+...|..+=.+|.+.|++++|.+.|++..+..  |+                 +...|..+-.+
T Consensus        54 eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~-----------------~~~~~~~lg~~  113 (151)
T 3gyz_A           54 EAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KN-----------------DYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SS-----------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CC-----------------CcHHHHHHHHH
Confidence            5555555555442 2467889999999999999999999999987753  32                 34588899999


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIPSRT  140 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p~~~  140 (153)
                      |.+.|++++|...|++..+..  |+..
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~--~~~~  138 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHS--NDEK  138 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence            999999999999999987753  5543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.84  E-value=0.00026  Score=47.22  Aligned_cols=114  Identities=18%  Similarity=0.076  Sum_probs=79.1

Q ss_pred             cccCChHHHHHHHHHHHHC-------CCCCChhhchHH-----------HHHHHHHHHHHc------CC-CccHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDN-------GYHPNVTTYTIL-----------EAYEMLMNVKND------GL-KPDVYTYTAV   57 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l-----------~a~~~~~~m~~~------g~-~~~~~t~~~l   57 (153)
                      ...|++++|...|++..+.       ..+.....+..+           .|...+.+....      +- +....+|..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3457777777777776662       111122333333           666666665543      22 2345789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           58 MDGFCKVGRSNEVMELLNEAIER------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        58 l~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      -..|...|++++|.+.|++..+.      .-.|+                 ...+|..+...|...|++++|...|++..
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD-----------------VAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999998764      11122                 24588899999999999999999999886


Q ss_pred             HC
Q 047010          132 EH  133 (153)
Q Consensus       132 ~~  133 (153)
                      +.
T Consensus       155 ~~  156 (283)
T 3edt_B          155 EI  156 (283)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.00056  Score=40.45  Aligned_cols=80  Identities=23%  Similarity=0.148  Sum_probs=61.8

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .+...|..+-.+|.+.|++++|.+.|++..+..  |+                 +...|..+-..+...|++++|...|+
T Consensus        36 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~   96 (126)
T 3upv_A           36 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN-----------------FVRAYIRKATAQIAVKEYASALETLD   96 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-----------------cHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            367889999999999999999999999987753  32                 34578889999999999999999999


Q ss_pred             HHHHCC----CCCCHHHHHHHHH
Q 047010          129 LMYEHG----KIPSRTLYDTLIK  147 (153)
Q Consensus       129 ~m~~~~----v~p~~~~~~~li~  147 (153)
                      +..+..    -.|+.......+.
T Consensus        97 ~al~~~p~~~~~p~~~~~~~~l~  119 (126)
T 3upv_A           97 AARTKDAEVNNGSSAREIDQLYY  119 (126)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHhCcccCCchhHHHHHHHHH
Confidence            886532    2265555444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.83  E-value=0.00059  Score=42.81  Aligned_cols=112  Identities=7%  Similarity=0.097  Sum_probs=78.7

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH--
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRS--   67 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~g~~--   67 (153)
                      +...|++++|...+....+.. +.+...|..+           .|...+++..... +.+...|..+-.. |.+.|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence            456788888988888877753 2344444444           7777777766553 2356677777777 7788998  


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010           68 NEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus        68 ~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      ++|.+.|++..+..  |+                 +...+..+...+...|++++|...|+...+..
T Consensus        98 ~~A~~~~~~al~~~--p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALALD--SN-----------------EITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC--CC-----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            99999999887753  22                 23477888889999999999999999987653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.83  E-value=0.00069  Score=39.26  Aligned_cols=83  Identities=18%  Similarity=0.207  Sum_probs=65.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+...+.+.|++++|.++|++..+..  |                 .+..++..+...+.+.|++++|...|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~   68 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-----------------NNAEAWYNLGNAYYKQGDYDEAIEYYQK   68 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c-----------------CcHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            35788889999999999999999999997753  2                 1345788899999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhhcC
Q 047010          130 MYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      +.+.. ..+..++..+...+.+.
T Consensus        69 ~~~~~-~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           69 ALELD-PNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHhC-CccHHHHHHHHHHHHHh
Confidence            87653 23566777776666554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=0.0014  Score=39.29  Aligned_cols=92  Identities=16%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHH
Q 047010           34 EAYEMLMNVKNDGLKPD----VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNN  109 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~----~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (153)
                      .|...+++..+.  .|+    ...|..+-.+|.+.|++++|.+.+++..+..  |+                 +...|..
T Consensus        46 ~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~  104 (148)
T 2dba_A           46 GALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GG-----------------DVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SC-----------------CHHHHHH
T ss_pred             HHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--cc-----------------CHHHHHH
Confidence            455555555443  244    5778888888999999999999999887652  21                 3457888


Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 047010          110 VIQALCGVGKIDKALLLLFLMYEHGKIPS-RTLYDTLIKK  148 (153)
Q Consensus       110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~-~~~~~~li~~  148 (153)
                      +...+...|++++|...|++..+..  |+ ...+..+-..
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~  142 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence            8889999999999999999987643  44 4444444333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.80  E-value=0.00089  Score=49.06  Aligned_cols=78  Identities=21%  Similarity=0.150  Sum_probs=61.5

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...+....+.. +.+...|..+           .|...+++..+... .+...|..+-..|.+.|++++|
T Consensus       286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence            567899999999999998864 2334455444           78888888877642 3457899999999999999999


Q ss_pred             HHHHHHHHHcC
Q 047010           71 MELLNEAIERG   81 (153)
Q Consensus        71 ~~l~~~m~~~~   81 (153)
                      .+.+++..+..
T Consensus       364 ~~~~~~~~~~~  374 (537)
T 3fp2_A          364 EAFFNETKLKF  374 (537)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.79  E-value=0.00081  Score=46.30  Aligned_cols=127  Identities=6%  Similarity=0.090  Sum_probs=80.0

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChh--hchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVT--TYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRSN   68 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~g~~~   68 (153)
                      .+.|++++|..+|+...+.  .|+..  .|..+           .|..+|++..+... ++...|...... +...|+.+
T Consensus       110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred             HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHH
Confidence            3568889999999988874  45432  45443           77777777766532 233344333322 22368888


Q ss_pred             HHHHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcC-CCC--cHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           69 EVMELLNEAIERGVTPNVVTL-----------------IHLHNVIDIG-HIP--RTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        69 ~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      +|.++|++..+.. +-+...+                 .++.+..... ..|  +...|..++....+.|+++.|..+++
T Consensus       187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~  265 (308)
T 2ond_A          187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8888888776542 1112222                 3333333432 244  35689999999999999999999999


Q ss_pred             HHHHC
Q 047010          129 LMYEH  133 (153)
Q Consensus       129 ~m~~~  133 (153)
                      ++.+.
T Consensus       266 ~a~~~  270 (308)
T 2ond_A          266 RRFTA  270 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.79  E-value=0.00064  Score=41.29  Aligned_cols=80  Identities=9%  Similarity=-0.020  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...|++..... +.+...|..+-.+|.+.|++++|...|++..+..  |+                 +...|..+-.+
T Consensus        36 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~   95 (142)
T 2xcb_A           36 DAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--IN-----------------EPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----------------CcHHHHHHHHH
Confidence            5556666555442 2467788888899999999999999999987753  22                 33477888889


Q ss_pred             HHccCcHHHHHHHHHHHHHC
Q 047010          114 LCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~  133 (153)
                      |...|++++|...|+...+.
T Consensus        96 ~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999988653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.75  E-value=0.00079  Score=39.41  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV--TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL  126 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  126 (153)
                      .+...|..+-..|.+.|++++|...+++.....-  .++..              -...+|..+...+.+.|++++|...
T Consensus        36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~  101 (131)
T 1elr_A           36 TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR--------------QIAKAYARIGNSYFKEEKYKDAIHF  101 (131)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH--------------HHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3567788888999999999999999999876421  11100              0045788888999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHH
Q 047010          127 LFLMYEHGKIPSRTLYDTLIK  147 (153)
Q Consensus       127 ~~~m~~~~v~p~~~~~~~li~  147 (153)
                      |+...+..  |+......+-.
T Consensus       102 ~~~~~~~~--~~~~~~~~l~~  120 (131)
T 1elr_A          102 YNKSLAEH--RTPDVLKKCQQ  120 (131)
T ss_dssp             HHHHHHHC--CCHHHHHHHHH
T ss_pred             HHHHHHhC--CCHHHHHHHHH
Confidence            99987753  56655554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.75  E-value=0.0016  Score=48.71  Aligned_cols=73  Identities=11%  Similarity=-0.023  Sum_probs=34.8

Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 047010            5 KNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVME   72 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~   72 (153)
                      .|++++|...++...+.  .|+ ...|..+           +|.+.+++..+.. +.+...|..+-..|.+.|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            46677777777776654  233 3333333           6666666666542 2346677777777888888888888


Q ss_pred             HHHHHHHc
Q 047010           73 LLNEAIER   80 (153)
Q Consensus        73 l~~~m~~~   80 (153)
                      .+++..+.
T Consensus        79 ~~~~al~~   86 (568)
T 2vsy_A           79 LLQQASDA   86 (568)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88877664

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.75  E-value=0.00074  Score=41.56  Aligned_cols=80  Identities=13%  Similarity=0.011  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...|++..... +.+...|..+-.+|.+.|++++|.+.|++..+..  |+                 +...|..+-.+
T Consensus        39 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~-----------------~~~~~~~lg~~   98 (148)
T 2vgx_A           39 DAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IX-----------------EPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC-----------------CchHHHHHHHH
Confidence            6666666665542 2477888888899999999999999999987753  22                 33478888899


Q ss_pred             HHccCcHHHHHHHHHHHHHC
Q 047010          114 LCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~  133 (153)
                      |...|++++|...|+...+.
T Consensus        99 ~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999988653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.73  E-value=0.00096  Score=41.07  Aligned_cols=128  Identities=13%  Similarity=0.029  Sum_probs=89.5

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChh-hchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVT-TYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      +...|++++|...+......  .|+.. .+-.+           .|.+.+++..+.. +-+...|..+-.+|.+.|++++
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence            44567888888888876653  23322 11112           7888888777653 2367889999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHH-HHHHHHCCCCC-CHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL-LFLMYEHGKIP-SRTLYDTLIK  147 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~v~p-~~~~~~~li~  147 (153)
                      |...|++..+..  |+                 +..+|..+-..|.+.|++++|... +++..+.  .| +...|...-.
T Consensus        84 A~~~~~~al~~~--p~-----------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~  142 (150)
T 4ga2_A           84 AVECYRRSVELN--PT-----------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQ  142 (150)
T ss_dssp             HHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence            999999987752  32                 345888899999999999876665 5666653  34 4556666555


Q ss_pred             HhhcCC
Q 047010          148 KLDQQP  153 (153)
Q Consensus       148 ~~~~~g  153 (153)
                      .+.+.|
T Consensus       143 ll~~~G  148 (150)
T 4ga2_A          143 LLDCEG  148 (150)
T ss_dssp             HHHTCC
T ss_pred             HHHHhC
Confidence            555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.72  E-value=0.0016  Score=37.32  Aligned_cols=66  Identities=14%  Similarity=0.119  Sum_probs=54.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-..+.+.|++++|.+.+++..+..  |+                 +...+..+...+...|++++|...++.
T Consensus        37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~   97 (118)
T 1elw_A           37 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PD-----------------WGKGYSRKAAALEFLNRFEEAKRTYEE   97 (118)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cc-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            56778888888999999999999999987653  21                 344788888999999999999999999


Q ss_pred             HHHCC
Q 047010          130 MYEHG  134 (153)
Q Consensus       130 m~~~~  134 (153)
                      ..+.+
T Consensus        98 ~~~~~  102 (118)
T 1elw_A           98 GLKHE  102 (118)
T ss_dssp             HHTTC
T ss_pred             HHHcC
Confidence            87653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.70  E-value=0.0042  Score=41.65  Aligned_cols=133  Identities=10%  Similarity=-0.021  Sum_probs=84.8

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----   63 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----   63 (153)
                      .+.|++++|...|....+.+   +...+..+               +|...+++..+.+   +...+..+-..|.+    
T Consensus        17 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~   90 (273)
T 1ouv_A           17 YKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGV   90 (273)
T ss_dssp             HHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred             HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCc
Confidence            45678888988888888732   22233222               6677777776665   67778888888888    


Q ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHH---------------------HHHHHHHHcCCCCcHhhHHHHHHHHHc----cC
Q 047010           64 VGRSNEVMELLNEAIERGVTPNVVTL---------------------IHLHNVIDIGHIPRTITFNNVIQALCG----VG  118 (153)
Q Consensus        64 ~g~~~~a~~l~~~m~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~li~~~~~----~g  118 (153)
                      .+++++|.+.|++..+.+   +...+                     ..+....+.+   +...+..+-..|..    .+
T Consensus        91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~  164 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPK  164 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCC
Confidence            889999999998887765   22222                     1112222222   34556666666666    78


Q ss_pred             cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047010          119 KIDKALLLLFLMYEHGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       119 ~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~  150 (153)
                      ++++|...|++..+.+   +...+..+-..+.
T Consensus       165 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~  193 (273)
T 1ouv_A          165 DLKKALASYDKACDLK---DSPGCFNAGNMYH  193 (273)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence            8888888888877654   3445554444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.70  E-value=0.0017  Score=39.77  Aligned_cols=109  Identities=11%  Similarity=0.024  Sum_probs=77.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +...|++++|...|....+.. +.+...+..+           .|...+.+..... +.+...|..+-.++.+.|++++|
T Consensus        23 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A  100 (166)
T 1a17_A           23 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA  100 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHH
Confidence            346789999999999988753 2234444433           7777777776653 34677888888999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhH--HHHHHHHHccCcHHHHHHHHHHHH
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITF--NNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      .+.|++..+..  |+                 +...+  -.....+.+.|++++|...+....
T Consensus       101 ~~~~~~a~~~~--p~-----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A          101 LRDYETVVKVK--PH-----------------DKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            99999987653  21                 11233  334444677899999999988764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.70  E-value=0.001  Score=41.26  Aligned_cols=80  Identities=10%  Similarity=0.022  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      .|...|++..... +-+...|..+-.+|.+.|++++|.+.|++..+..  |+                 +...|..+-..
T Consensus        29 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~   88 (164)
T 3sz7_A           29 KAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PK-----------------YSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHH
Confidence            3444444433331 2367788889999999999999999999987753  22                 34588889999


Q ss_pred             HHccCcHHHHHHHHHHHHHC
Q 047010          114 LCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~  133 (153)
                      |.+.|++++|...|++..+.
T Consensus        89 ~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh
Confidence            99999999999999988653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.69  E-value=0.0011  Score=47.51  Aligned_cols=75  Identities=7%  Similarity=0.049  Sum_probs=51.5

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCC-hhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      .+.|++++|...++...+..  |+ ...|+.+            +|+..+++..... +-+...|..+-.++.+.|++++
T Consensus       108 ~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~e  184 (382)
T 2h6f_A          108 QRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQ  184 (382)
T ss_dssp             HHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred             HHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHH
Confidence            34577888888888888753  44 3344322            5666666666543 2356778888888888888888


Q ss_pred             HHHHHHHHHHc
Q 047010           70 VMELLNEAIER   80 (153)
Q Consensus        70 a~~l~~~m~~~   80 (153)
                      |+..|++..+.
T Consensus       185 Al~~~~kal~l  195 (382)
T 2h6f_A          185 ELEFIADILNQ  195 (382)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88888887765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.63  E-value=0.0017  Score=47.69  Aligned_cols=125  Identities=10%  Similarity=-0.005  Sum_probs=86.7

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH--------------------HHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------------EAYEMLMNVKNDGLKPDVYTYTAVMDGF   61 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~   61 (153)
                      |.+.|++++|...|+...+.  .|+...+..+                    +|...+++..+.. +-+...|..+-.+|
T Consensus       147 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~  223 (474)
T 4abn_A          147 YWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAY  223 (474)
T ss_dssp             HHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            45679999999999999886  4665544433                    5666666666553 33678899999999


Q ss_pred             Hhc--------CCHHHHHHHHHHHHHcCCC--chHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010           62 CKV--------GRSNEVMELLNEAIERGVT--PNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQAL  114 (153)
Q Consensus        62 ~~~--------g~~~~a~~l~~~m~~~~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~  114 (153)
                      ...        |++++|.+.|++..+..-.  -+...+                 ..+....+.. .-+...+..+-..+
T Consensus       224 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~  302 (474)
T 4abn_A          224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLL  302 (474)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            999        9999999999999875310  133333                 2222222221 22456788888899


Q ss_pred             HccCcHHHHHHHHHHH
Q 047010          115 CGVGKIDKALLLLFLM  130 (153)
Q Consensus       115 ~~~g~~~~a~~~~~~m  130 (153)
                      ...|++++|...+..+
T Consensus       303 ~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          303 EFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999998876554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.63  E-value=0.0018  Score=38.57  Aligned_cols=79  Identities=15%  Similarity=0.040  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      .|...+.+..... +.+...|..+-.++.+.|++++|...+++..+..  |+                 +...|..+-..
T Consensus        27 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~l~~~   86 (137)
T 3q49_B           27 EAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQ-----------------SVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ch-----------------hHHHHHHHHHH
Confidence            4444444444332 2356788888889999999999999999887753  22                 34588889999


Q ss_pred             HHccCcHHHHHHHHHHHHH
Q 047010          114 LCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~  132 (153)
                      +...|++++|...|+...+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            9999999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.62  E-value=0.0025  Score=38.03  Aligned_cols=102  Identities=12%  Similarity=0.137  Sum_probs=71.1

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG-   81 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~-   81 (153)
                      .+.|++++|...|....+..                         +-+...|+.+-.+|.+.|++++|++.|++..+.. 
T Consensus        19 ~~~~~~~~A~~~y~~Al~~~-------------------------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A           19 YKQKDFEKAHVHYDKAIELD-------------------------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            34566667766666655421                         2367789999999999999999999999887632 


Q ss_pred             -CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047010           82 -VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL  145 (153)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~l  145 (153)
                       ..++..              .-..+|..+-..+...|++++|...|++..+.  .||..+...|
T Consensus        74 ~~~~~~~--------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l  122 (127)
T 4gcn_A           74 ETRADYK--------------LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV  122 (127)
T ss_dssp             HTTCCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             ccchhhH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence             111110              00136777778889999999999999987663  4676665544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.62  E-value=0.0091  Score=44.17  Aligned_cols=143  Identities=10%  Similarity=0.027  Sum_probs=94.1

Q ss_pred             cCChH-------HHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhc
Q 047010            5 KNDFF-------EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKV   64 (153)
Q Consensus         5 ~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~   64 (153)
                      .|+++       +|..+|+...+.-.+-+...|..+           .|..++++..+.  .|+  ...|......+.+.
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~  369 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA  369 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence            57776       889999988763223334455443           788888888775  343  35899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCchHHHH------------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHH
Q 047010           65 GRSNEVMELLNEAIERGVTPNVVTL------------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL  126 (153)
Q Consensus        65 g~~~~a~~l~~~m~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  126 (153)
                      |++++|.++|++..+..- .+...+                  .++....+. ..-+...|..++..+.+.|+.+.|..+
T Consensus       370 ~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~  447 (530)
T 2ooe_A          370 EGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVL  447 (530)
T ss_dssp             HHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence            999999999999876531 111111                  111111111 122567899999999999999999999


Q ss_pred             HHHHHHCC-CCCC--HHHHHHHHHHhhc
Q 047010          127 LFLMYEHG-KIPS--RTLYDTLIKKLDQ  151 (153)
Q Consensus       127 ~~~m~~~~-v~p~--~~~~~~li~~~~~  151 (153)
                      |++....+ ..|+  ...|...+....+
T Consensus       448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~  475 (530)
T 2ooe_A          448 FERVLTSGSLPPEKSGEIWARFLAFESN  475 (530)
T ss_dssp             HHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            99988753 2332  4456555554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.61  E-value=0.006  Score=40.87  Aligned_cols=134  Identities=10%  Similarity=-0.025  Sum_probs=92.8

Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cC
Q 047010            5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VG   65 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~g   65 (153)
                      .+++++|...|....+.+   +...+..+               +|...+++..+.+   +...+..+-..|.+    .+
T Consensus        55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~  128 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR  128 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence            788999999999988875   34444333               6777777777664   67788888888888    89


Q ss_pred             CHHHHHHHHHHHHHcCCCchHHHH-------------------HHHHHHHHcCCCCcHhhHHHHHHHHHc----cCcHHH
Q 047010           66 RSNEVMELLNEAIERGVTPNVVTL-------------------IHLHNVIDIGHIPRTITFNNVIQALCG----VGKIDK  122 (153)
Q Consensus        66 ~~~~a~~l~~~m~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~  122 (153)
                      ++++|.+.|++..+.+ .+.....                   ..+....+.   -+...+..+-..|..    .+++++
T Consensus       129 ~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~  204 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN-DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKE  204 (273)
T ss_dssp             CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred             CHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            9999999999988866 2221111                   112222222   244667778888888    999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          123 ALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       123 a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      |...|++..+.+  | ...+..+-..|.+
T Consensus       205 A~~~~~~a~~~~--~-~~a~~~l~~~~~~  230 (273)
T 1ouv_A          205 ALARYSKACELE--N-GGGCFNLGAMQYN  230 (273)
T ss_dssp             HHHHHHHHHHTT--C-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCC--C-HHHHHHHHHHHHc
Confidence            999999988865  2 4555555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.60  E-value=0.0011  Score=39.23  Aligned_cols=80  Identities=13%  Similarity=-0.017  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...+++..+.. +.+...|..+=.++.+.|++++|...|++..+..  |+                 +...+..+-..
T Consensus        35 ~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~-----------------~~~~~~~la~~   94 (121)
T 1hxi_A           35 EAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PK-----------------DIAVHAALAVS   94 (121)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHH
Confidence            5555555555432 2367788888889999999999999999987753  32                 33478888999


Q ss_pred             HHccCcHHHHHHHHHHHHHC
Q 047010          114 LCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~  133 (153)
                      +.+.|++++|...+++..+.
T Consensus        95 ~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           95 HTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999988653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.57  E-value=0.00069  Score=49.41  Aligned_cols=63  Identities=10%  Similarity=-0.047  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIER-----G-VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL  125 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  125 (153)
                      .+++.|..+|...|++++|+.++++...-     | -.|+..                 .+++.+-..|...|++++|..
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-----------------~~l~nLa~~~~~qg~~~eA~~  403 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA-----------------SMWLKLGRLYMGLENKAAGEK  403 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-----------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-----------------HHHHHHHHHHHhccCHHHHHH
Confidence            78999999999999999999999987652     2 223333                 479999999999999999999


Q ss_pred             HHHHHH
Q 047010          126 LLFLMY  131 (153)
Q Consensus       126 ~~~~m~  131 (153)
                      ++++..
T Consensus       404 ~~~~Al  409 (433)
T 3qww_A          404 ALKKAI  409 (433)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998774

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.55  E-value=0.0013  Score=42.64  Aligned_cols=115  Identities=12%  Similarity=0.032  Sum_probs=73.4

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChh-hchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVT-TYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      .+.|++++|...|....+..  |+.. .|...       .+ ..........++.+-.+|.+.|++++|...|++..+..
T Consensus        15 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A           15 IEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-------NV-DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-------HS-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-------hh-cchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            45688888888888877642  3211 11110       00 00011122233447888999999999999999988753


Q ss_pred             CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010           82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK  147 (153)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~  147 (153)
                        |+                 +...|..+-..+...|++++|...|++..+.. +-+...+..+-.
T Consensus        85 --p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~  130 (208)
T 3urz_A           85 --PN-----------------NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGN  130 (208)
T ss_dssp             --TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             --CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence              32                 34578888888999999999999999887643 123445544433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.54  E-value=0.00095  Score=39.07  Aligned_cols=82  Identities=15%  Similarity=0.173  Sum_probs=62.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-..|.+.|++++|.+.|++..+..  |+                 +...+..+-.++.+.|++++|...|++
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~   86 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PN-----------------HQALRVFYAMVLYNLGRYEQGVELLLK   86 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45778888899999999999999999988753  32                 234788889999999999999999998


Q ss_pred             HHHC-CCCCCHHHHHHHHHHhh
Q 047010          130 MYEH-GKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       130 m~~~-~v~p~~~~~~~li~~~~  150 (153)
                      ..+. .-.|+...|...+..+.
T Consensus        87 al~~~p~~~~~~~~~~ai~~~~  108 (117)
T 3k9i_A           87 IIAETSDDETIQSYKQAILFYA  108 (117)
T ss_dssp             HHHHHCCCHHHHHTHHHHHHHT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHH
Confidence            8654 22344444555555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.51  E-value=0.0032  Score=36.96  Aligned_cols=67  Identities=10%  Similarity=-0.014  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ..+..+-.++.+.|++++|.+.|++..+..  |+..              .....+..+-..+.+.|++++|...|+...
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHD--------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTST--------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCc--------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            466777788999999999999999987753  2210              002367777888999999999999999987


Q ss_pred             HCC
Q 047010          132 EHG  134 (153)
Q Consensus       132 ~~~  134 (153)
                      +..
T Consensus       104 ~~~  106 (129)
T 2xev_A          104 TQY  106 (129)
T ss_dssp             HHS
T ss_pred             HHC
Confidence            643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.48  E-value=0.0013  Score=40.52  Aligned_cols=80  Identities=10%  Similarity=-0.066  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ...+-.+-..|.+.|++++|.+.|++..+..  |+                 +..+|..+-..|.+.|++++|...|++.
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a   91 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ER-----------------DPKAHRFLGLLYELEENTDKAVECYRRS   91 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            4556678889999999999999999988753  32                 3458999999999999999999999998


Q ss_pred             HHCCCCC-CHHHHHHHHHHhhc
Q 047010          131 YEHGKIP-SRTLYDTLIKKLDQ  151 (153)
Q Consensus       131 ~~~~v~p-~~~~~~~li~~~~~  151 (153)
                      .+..  | +...+..+-..+.+
T Consensus        92 l~~~--p~~~~~~~~la~~~~~  111 (150)
T 4ga2_A           92 VELN--PTQKDLVLKIAELLCK  111 (150)
T ss_dssp             HHHC--TTCHHHHHHHHHHHHH
T ss_pred             HHhC--CCCHHHHHHHHHHHHH
Confidence            7753  4 45666666655544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.47  E-value=0.0042  Score=46.39  Aligned_cols=112  Identities=9%  Similarity=-0.012  Sum_probs=87.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...|+...+.. +.+...|..+           +|.+.+++..+.. +.+...|..+-.+|.+.|++++|
T Consensus        33 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A  110 (568)
T 2vsy_A           33 ELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAA  110 (568)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            346789999999999998853 2234444444           7888888877653 23578899999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc---CcHHHHHHHHHHHHHCC
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV---GKIDKALLLLFLMYEHG  134 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~  134 (153)
                      .+.|++..+..  |+                 +...+..+...+...   |++++|...+++..+.+
T Consensus       111 ~~~~~~al~~~--p~-----------------~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          111 AAAYTRAHQLL--PE-----------------EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            99999987753  22                 234788888888889   99999999999887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.46  E-value=0.0047  Score=40.21  Aligned_cols=82  Identities=12%  Similarity=-0.024  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...|++.......++...|..+-.++.+.|++++|.+.|++..+.  .|+                 +...|..+-..
T Consensus        25 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~-----------------~~~~~~~l~~~   85 (228)
T 4i17_A           25 VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYN-----------------LANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCS-----------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--Ccc-----------------hHHHHHHHHHH
Confidence            78888888887765577777777889999999999999999998764  333                 23578899999


Q ss_pred             HHccCcHHHHHHHHHHHHHCC
Q 047010          114 LCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      |...|++++|...|++..+..
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~  106 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAV  106 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHcccHHHHHHHHHHHHHHC
Confidence            999999999999999987643

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.44  E-value=0.0017  Score=40.81  Aligned_cols=109  Identities=11%  Similarity=0.095  Sum_probs=71.0

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      .+.|++++|...++...+.  .|+...+..+            .+...+++..... +-+...+..+-..+.+.|++++|
T Consensus        51 ~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A  127 (176)
T 2r5s_A           51 LETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEA  127 (176)
T ss_dssp             HHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence            4567777777777776553  2333222221            2344444444331 22567788888888888888888


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      .+.|++..+..-.+                 .+...+..+...+...|+.++|...|++..
T Consensus       128 ~~~~~~~l~~~p~~-----------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          128 LELLWNILKVNLGA-----------------QDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHTTCTTT-----------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccc-----------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            88888877653211                 123478888899999999999999888654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.41  E-value=0.0057  Score=35.77  Aligned_cols=85  Identities=14%  Similarity=0.039  Sum_probs=66.0

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010           48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL  127 (153)
Q Consensus        48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  127 (153)
                      +.+...|..+-..+.+.|++++|.+.|++..+..  |+                 +...|..+...+...|++++|...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~   73 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PK-----------------DAKLYSNRAACYTKLLEFQLALKDC   73 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TT-----------------CHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-----------------cHHHHHHHHHHHHHhccHHHHHHHH
Confidence            4466889999999999999999999999987642  21                 3458888999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          128 FLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       128 ~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ++..+.. ..+...+..+-..+.+.
T Consensus        74 ~~a~~~~-~~~~~~~~~la~~~~~~   97 (133)
T 2lni_A           74 EECIQLE-PTFIKGYTRKAAALEAM   97 (133)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhC-CCchHHHHHHHHHHHHH
Confidence            9987753 23456666665555543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.41  E-value=0.0029  Score=49.13  Aligned_cols=108  Identities=11%  Similarity=0.026  Sum_probs=86.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE   69 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~   69 (153)
                      |.+.|++++|...|++..+.  .|+ ...|..+           +|.+.+++..+.. +-+...|+.+-..|.+.|++++
T Consensus        53 l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~e  129 (723)
T 4gyw_A           53 LQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPE  129 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            45689999999999999885  354 3455444           7888888877653 2357889999999999999999


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           70 VMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        70 a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      |++.|++..+.  .|+                 +...|..+...+...|++++|.+.+++..
T Consensus       130 Ai~~~~~Al~l--~P~-----------------~~~a~~~L~~~l~~~g~~~~A~~~~~kal  172 (723)
T 4gyw_A          130 AIASYRTALKL--KPD-----------------FPDAYCNLAHCLQIVCDWTDYDERMKKLV  172 (723)
T ss_dssp             HHHHHHHHHHH--CSC-----------------CHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCC-----------------ChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence            99999998775  333                 33588999999999999999998887764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.40  E-value=0.0022  Score=43.79  Aligned_cols=114  Identities=14%  Similarity=0.088  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHH------------------HHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI------------------HLHNV   95 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~------------------~~~~~   95 (153)
                      .|.+.+++..... +-+...+..+-..+.+.|++++|..++++.....  |+.....                  .+.+.
T Consensus       135 ~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~a  211 (287)
T 3qou_A          135 DALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQ  211 (287)
T ss_dssp             HHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence            6777777766553 2356778888889999999999999998875542  3333221                  11111


Q ss_pred             HHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc
Q 047010           96 IDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKKLDQ  151 (153)
Q Consensus        96 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~~~~  151 (153)
                      ... ...+...+..+-..+...|++++|...|.+..+..-.. +...+..+...+..
T Consensus       212 l~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          212 VAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             Hhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            111 12356788999999999999999999999997754211 24456666665543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.39  E-value=0.0016  Score=48.29  Aligned_cols=64  Identities=6%  Similarity=0.035  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-----G-VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL  124 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  124 (153)
                      ..+++.|...|...|++++|+.++++...-     | -.|+..                 .+++.+-..|...|++++|.
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-----------------~~l~nLa~~~~~~G~~~eA~  413 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG-----------------MAVMRAGLTNWHAGHIEVGH  413 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH-----------------HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHHHHCCCHHHHH
Confidence            378999999999999999999999987542     2 223322                 47999999999999999999


Q ss_pred             HHHHHHH
Q 047010          125 LLLFLMY  131 (153)
Q Consensus       125 ~~~~~m~  131 (153)
                      .++++..
T Consensus       414 ~~~~~Al  420 (490)
T 3n71_A          414 GMICKAY  420 (490)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.38  E-value=0.001  Score=41.86  Aligned_cols=100  Identities=14%  Similarity=0.025  Sum_probs=61.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHH---HHc-------------CCCC-cHhhHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNV---IDI-------------GHIP-RTITFNNVIQ  112 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~---~~~-------------~~~~-~~~~~~~li~  112 (153)
                      +...|..+-..+.+.|++++|.+.|++.....  |+.........+   ...             ...| +...+..+-.
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~  116 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV  116 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45666777777777777777777777654432  122221110000   000             1123 4678888999


Q ss_pred             HHHccCcHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc
Q 047010          113 ALCGVGKIDKALLLLFLMYEHGKIP-SRTLYDTLIKKLDQ  151 (153)
Q Consensus       113 ~~~~~g~~~~a~~~~~~m~~~~v~p-~~~~~~~li~~~~~  151 (153)
                      .+...|++++|...|++..+..-.+ +...+..+...+..
T Consensus       117 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~  156 (176)
T 2r5s_A          117 QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA  156 (176)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence            9999999999999999988765332 24466666665544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.37  E-value=0.017  Score=41.34  Aligned_cols=144  Identities=12%  Similarity=0.122  Sum_probs=96.6

Q ss_pred             cccCC-hHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            3 CNKND-FFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         3 ~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      .+.|+ +++|...|+...+.. +-+...|..+           +|+..+++..... +-+...|..+-.++.+.|++++|
T Consensus       142 ~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eA  219 (382)
T 2h6f_A          142 KSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNE  219 (382)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             HHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHH
Confidence            35575 999999999999864 2234455444           7888888877653 34778899999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHH-HHH-c-------------------CCCC-cHhhHHHHHHHHHccC--cHHHHHHH
Q 047010           71 MELLNEAIERGVTPNVVTLIHLHN-VID-I-------------------GHIP-RTITFNNVIQALCGVG--KIDKALLL  126 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~~~~~~-~~~-~-------------------~~~~-~~~~~~~li~~~~~~g--~~~~a~~~  126 (153)
                      ++.|++..+..-. +...+..... ... .                   ...| +...|+.+-..+.+.|  ++++|...
T Consensus       220 l~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~  298 (382)
T 2h6f_A          220 LQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ  298 (382)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence            9999999886432 2222211111 011 1                   1223 4457888888888877  68999998


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          127 LFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       127 ~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      +.++ +. -..+...+..+...|.+
T Consensus       299 ~~~~-~~-~p~~~~al~~La~~~~~  321 (382)
T 2h6f_A          299 LLDL-QP-SHSSPYLIAFLVDIYED  321 (382)
T ss_dssp             HHHH-TT-TCCCHHHHHHHHHHHHH
T ss_pred             HHHh-cc-CCCCHHHHHHHHHHHHH
Confidence            8887 32 23455666667666654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.36  E-value=0.0048  Score=34.86  Aligned_cols=84  Identities=13%  Similarity=0.076  Sum_probs=64.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-..+.+.|++++|...|++..+..  |                 .+...|..+-..+...|++++|...|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~   65 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--P-----------------EESKYWLMKGKALYNLERYEEAVDCYNY   65 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--C-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--c-----------------CCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            44567778888999999999999999987753  2                 1334788888999999999999999999


Q ss_pred             HHHCCCC-CCHHHHHHHHHHhhcC
Q 047010          130 MYEHGKI-PSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       130 m~~~~v~-p~~~~~~~li~~~~~~  152 (153)
                      ..+..-. .+...+..+-..+.+.
T Consensus        66 a~~~~~~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           66 VINVIEDEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             HHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred             HHHhCcccchHHHHHHHHHHHHHH
Confidence            8875311 1466676666666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.35  E-value=0.012  Score=39.96  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=80.1

Q ss_pred             cccCChHHHHHHHHHHHHCC-CCCChh----hchHH-----------HHHHHHHHHHHcCCC-cc----HHHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNG-YHPNVT----TYTIL-----------EAYEMLMNVKNDGLK-PD----VYTYTAVMDGF   61 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~-~~~~~~----~~~~l-----------~a~~~~~~m~~~g~~-~~----~~t~~~ll~~~   61 (153)
                      .+.|++++|..++....+.. ..|+..    .+..+           .|+..+.+....... ++    ...|+.+-..|
T Consensus        86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 3u3w_A           86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            45689999999999988742 222221    11112           778888877763222 23    34689999999


Q ss_pred             HhcCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           62 CKVGRSNEVMELLNEAIER--GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        62 ~~~g~~~~a~~l~~~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ...|++++|.+.|++..+.  ..+.+..              ....+|..+...|.+.|++++|...+++..
T Consensus       166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          166 AENGYLKKGIDLFEQILKQLEALHDNEE--------------FDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSSCCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhcccchh--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999998741  0101111              112478899999999999999999998775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.31  E-value=0.01  Score=41.38  Aligned_cols=119  Identities=8%  Similarity=0.023  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010           11 ARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL-KPDVYTYTAVMDGFCKVGRSNEVMELLNEAI   78 (153)
Q Consensus        11 a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~   78 (153)
                      |...|++..+.+ .++...+..+           +|++.+.+-...+. .-+...+-.++..+.+.|+.+.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455566665544 3444443322           77777777655543 2356778888888999999999999998887


Q ss_pred             HcCCCc------hHHHHH---HHHHHHHc---------------CCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           79 ERGVTP------NVVTLI---HLHNVIDI---------------GHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        79 ~~~~~~------~~~~~~---~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      +.  .|      |.....   .+..+...               ...|+..+-..++.++.+.|++++|...++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            65  45      222221   11111111               1224433444555589999999999999997654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.31  E-value=0.0085  Score=39.79  Aligned_cols=98  Identities=9%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--HHH-----------------HHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV--VTL-----------------IHLHN   94 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~~~-----------------~~~~~   94 (153)
                      .|...+++..+... .+...|..+-..|.+.|++++|.+.+++..+.+-.|+.  ..+                 ..+..
T Consensus        21 ~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~   99 (272)
T 3u4t_A           21 EAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA   99 (272)
T ss_dssp             HHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            77888888877632 34558888999999999999999999999884433332  111                 22222


Q ss_pred             HHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           95 VIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        95 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      ..+. ...+..+|..+-..|...|++++|...|++..+.
T Consensus       100 a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A          100 AVDR-DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             HHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             HHhc-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence            2221 1224467778888888888888888888777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.30  E-value=0.0056  Score=33.42  Aligned_cols=82  Identities=18%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-..+.+.|++++|.+.|++..+..  |+                 +...|..+-..+.+.|++++|...|++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~   68 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PN-----------------NAEAWYNLGNAYYKQGDYDEAIEYYQK   68 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CC-----------------CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45678888889999999999999999987653  22                 334788888999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhhc
Q 047010          130 MYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      ..+.. .-+...+..+-..+.+
T Consensus        69 a~~~~-p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           69 ALELD-PNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHhcC-CCCHHHHHHHHHHHHh
Confidence            87653 2245555555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.29  E-value=0.0062  Score=44.84  Aligned_cols=88  Identities=15%  Similarity=0.111  Sum_probs=58.9

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      +.+.|++++|...|+...+..  |                       .+...|..+-.+|.+.|++++|.+.+++..+..
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~--p-----------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   70 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELN--P-----------------------SNAIYYGNRSLAYLRTECYGYALGDATRAIELD   70 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHC--T-----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHhCCHHHHHHHHHHHHHhC--C-----------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            456788888888888777642  2                       245667777777777777777777777766542


Q ss_pred             CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                        |+                 +...|..+-.+|.+.|++++|...|++..+.
T Consensus        71 --p~-----------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  103 (477)
T 1wao_1           71 --KK-----------------YIKGYYRRAASNMALGKFRAALRDYETVVKV  103 (477)
T ss_dssp             --TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             --CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              22                 2346666677777777777777777766553

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.28  E-value=0.019  Score=39.02  Aligned_cols=115  Identities=13%  Similarity=0.106  Sum_probs=77.0

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhh------chHH-----------HHHHHHHHHHHcCC---Ccc--HHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTT------YTIL-----------EAYEMLMNVKNDGL---KPD--VYTYTAVMDG   60 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~l-----------~a~~~~~~m~~~g~---~~~--~~t~~~ll~~   60 (153)
                      ...|++++|...+....+..-. +...      +..+           .|...+.+......   .+.  ..+|+.+-..
T Consensus        86 ~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  164 (293)
T 2qfc_A           86 CKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI  164 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            4568899999998887765321 1111      1111           67777766654321   122  4588899999


Q ss_pred             HHhcCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           61 FCKVGRSNEVMELLNEAIER--GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      |...|++++|.+.|++..+.  ..+.+..              ....+|..+-..|...|++++|...+++..+
T Consensus       165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~--------------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          165 YAENGYLKKGIDLFEQILKQLEALHDNEE--------------FDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCcccc--------------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999987631  1111110              1124888899999999999999999988753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.25  E-value=0.011  Score=41.38  Aligned_cols=107  Identities=9%  Similarity=-0.046  Sum_probs=77.3

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCCh----------------hhchHH-----------HHHHHHHHHHHcCCCccHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNV----------------TTYTIL-----------EAYEMLMNVKNDGLKPDVYTY   54 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~   54 (153)
                      |.+.|++++|...|....+..  |+.                ..|..+           +|...+++..... +.+...|
T Consensus       157 ~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~  233 (336)
T 1p5q_A          157 YFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL  233 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence            446789999999999988863  332                444433           7777777776653 2367788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH-HHHHHHH
Q 047010           55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA-LLLLFLM  130 (153)
Q Consensus        55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m  130 (153)
                      ..+-.+|.+.|++++|.+.|++..+..  |+                 +...+..+...+.+.|++++| ..+++.|
T Consensus       234 ~~lg~~~~~~g~~~~A~~~~~~al~l~--P~-----------------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          234 SRRGEAHLAVNDFELARADFQKVLQLY--PN-----------------NKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--SS-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC--CC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999998887642  22                 334777888888888888887 3455555

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.24  E-value=0.012  Score=37.68  Aligned_cols=77  Identities=13%  Similarity=0.059  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...+++.    +.|+...|..+-..|.+.|++++|.+.|++..+..  |+                 +...|..+-..
T Consensus        24 ~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-----------------~~~~~~~lg~~   80 (213)
T 1hh8_A           24 GALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KH-----------------LAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred             HHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-----------------chHHHHHHHHH
Confidence            455555444    46788999999999999999999999999987753  22                 34588899999


Q ss_pred             HHccCcHHHHHHHHHHHHHC
Q 047010          114 LCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~  133 (153)
                      +...|++++|...|+...+.
T Consensus        81 ~~~~~~~~~A~~~~~~al~~  100 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQ  100 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHcccHHHHHHHHHHHHHh
Confidence            99999999999999998764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.24  E-value=0.0098  Score=37.93  Aligned_cols=75  Identities=9%  Similarity=0.063  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ...|..+-.+|.+.|++++|.+.+++..+..  |+                 +...|..+-.+|...|++++|...|++.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID--KN-----------------NVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cc-----------------cHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            4778888899999999999999999987752  22                 3457888889999999999999999988


Q ss_pred             HHCCCCC-CHHHHHHHH
Q 047010          131 YEHGKIP-SRTLYDTLI  146 (153)
Q Consensus       131 ~~~~v~p-~~~~~~~li  146 (153)
                      .+..  | +...+..+-
T Consensus       149 l~~~--p~~~~~~~~l~  163 (198)
T 2fbn_A          149 ASLN--PNNLDIRNSYE  163 (198)
T ss_dssp             HHHS--TTCHHHHHHHH
T ss_pred             HHHC--CCcHHHHHHHH
Confidence            7643  4 334444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.23  E-value=0.011  Score=39.42  Aligned_cols=127  Identities=11%  Similarity=0.022  Sum_probs=81.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCCh----hhchHH-----------HHHHHHHHHHHcCC-Cc-cHHHHHHHHHHHHh-
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNV----TTYTIL-----------EAYEMLMNVKNDGL-KP-DVYTYTAVMDGFCK-   63 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l-----------~a~~~~~~m~~~g~-~~-~~~t~~~ll~~~~~-   63 (153)
                      +.+.|++++|...|+.+.+..  |+.    ..+..+           .|...+++..+... .| ....+..+-.++.+ 
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~  102 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL  102 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence            346799999999999998863  332    222222           88888888877633 12 24567777777888 


Q ss_pred             -------cCCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           64 -------VGRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        64 -------~g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                             .|++++|...|++..+..  |+.. .......+.... .--...+-.+-..|.+.|++++|...|+...+.
T Consensus       103 ~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  177 (261)
T 3qky_A          103 SPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELR-AKLARKQYEAARLYERRELYEAAAVTYEAVFDA  177 (261)
T ss_dssp             CCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence                   999999999999987753  2211 000000000000 000011345677888999999999999998764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.22  E-value=0.011  Score=35.03  Aligned_cols=84  Identities=14%  Similarity=-0.011  Sum_probs=66.0

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .+...|..+-..+.+.|++++|...|++..+..  |+                 +...|..+-..+...|++++|...++
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~   67 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PL-----------------VAVYYTNRALCYLKMQQPEQALADCR   67 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cC-----------------cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            467889999999999999999999999987753  22                 34588899999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          129 LMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       129 ~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ...+.. ..+...+..+-..+.+.
T Consensus        68 ~al~~~-p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           68 RALELD-GQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHhC-chhHHHHHHHHHHHHHH
Confidence            987754 22455666665555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.22  E-value=0.0075  Score=37.32  Aligned_cols=83  Identities=11%  Similarity=-0.095  Sum_probs=63.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-..+.+.|++++|.+.|++.....  |+                 +...|..+-.+|...|++++|...|++
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~-----------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FY-----------------NVDYIMGLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            44567788888999999999999999988753  32                 345899999999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhhcC
Q 047010          130 MYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ..+..- -+...|..+=.++.+.
T Consensus        96 al~l~P-~~~~~~~~lg~~~~~l  117 (151)
T 3gyz_A           96 AFALGK-NDYTPVFHTGQCQLRL  117 (151)
T ss_dssp             HHHHSS-SCCHHHHHHHHHHHHT
T ss_pred             HHhhCC-CCcHHHHHHHHHHHHc
Confidence            977541 2344555555554443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.20  E-value=0.0066  Score=42.85  Aligned_cols=131  Identities=11%  Similarity=0.036  Sum_probs=76.1

Q ss_pred             cccCChHHHHHHHHHHHHCC-CCCCh----hhchHH-----------HHHHHHHHHHHc----CC-C-ccHHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNG-YHPNV----TTYTIL-----------EAYEMLMNVKND----GL-K-PDVYTYTAVMDG   60 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~l-----------~a~~~~~~m~~~----g~-~-~~~~t~~~ll~~   60 (153)
                      ...|++++|...|....+.- -.++.    ..+..+           .|...+.+..+.    +- . ....+++.+-..
T Consensus       114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  193 (383)
T 3ulq_A          114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN  193 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence            45789999999999987741 11222    223322           555555543321    11 1 124678888899


Q ss_pred             HHhcCCHHHHHHHHHHHHHc----CCCchHH-HH-----------------HHHHHHH----HcCC-CCcHhhHHHHHHH
Q 047010           61 FCKVGRSNEVMELLNEAIER----GVTPNVV-TL-----------------IHLHNVI----DIGH-IPRTITFNNVIQA  113 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~----~~~~~~~-~~-----------------~~~~~~~----~~~~-~~~~~~~~~li~~  113 (153)
                      |...|++++|.+.|++..+.    +-.+... ++                 ..+....    ..+. .....++..+-..
T Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  273 (383)
T 3ulq_A          194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI  273 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            99999999999999987653    1111111 11                 1111111    1122 2234556777777


Q ss_pred             HHccCcHHHHHHHHHHHHHC
Q 047010          114 LCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~  133 (153)
                      |.+.|++++|...+++..+.
T Consensus       274 ~~~~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          274 HYKLGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            77777777777777777664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.19  E-value=0.014  Score=35.87  Aligned_cols=70  Identities=19%  Similarity=0.230  Sum_probs=58.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-.+|.+.|++++|...+++..+..  |+                 +...|..+-.+|...|++++|...|+.
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~a~~~~g~~~~~~g~~~~A~~~~~~  122 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ET-----------------NEKALFRRAKARIAAWKLDEAEEDLKL  122 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--Cc-----------------chHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            44678899999999999999999999988753  32                 345888899999999999999999999


Q ss_pred             HHHCCCCCCHH
Q 047010          130 MYEHGKIPSRT  140 (153)
Q Consensus       130 m~~~~v~p~~~  140 (153)
                      ..+.  .|+..
T Consensus       123 al~l--~p~~~  131 (162)
T 3rkv_A          123 LLRN--HPAAA  131 (162)
T ss_dssp             HHHH--CGGGH
T ss_pred             HHhc--CCCCH
Confidence            8775  35544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.18  E-value=0.01  Score=36.34  Aligned_cols=82  Identities=9%  Similarity=-0.075  Sum_probs=61.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...+..+-..+.+.|++++|...|++.....  |                 .+...|..+-.+|...|++++|...|++
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~   80 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--H-----------------YDSRFFLGLGACRQAMGQYDLAIHSYSY   80 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--c-----------------ccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44667778888999999999999999987653  2                 2345788888999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhhc
Q 047010          130 MYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      ..+..- -+...+..+-.++..
T Consensus        81 al~l~p-~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           81 GAVMDI-XEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHST-TCTHHHHHHHHHHHH
T ss_pred             HHhcCC-CCchHHHHHHHHHHH
Confidence            876541 234455555444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.17  E-value=0.01  Score=33.75  Aligned_cols=83  Identities=17%  Similarity=0.122  Sum_probs=63.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-..+...|++++|.+.|++.....  |+                 +...+..+...+...|++++|...+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~   63 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--PH-----------------NHVLYSNRSAAYAKKGDYQKAYEDGCK   63 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CC-----------------cHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            45677888889999999999999999987753  21                 344788888899999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhhcC
Q 047010          130 MYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ..+.. ..+...+..+-..+.+.
T Consensus        64 ~~~~~-~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A           64 TVDLK-PDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHhC-cccHHHHHHHHHHHHHH
Confidence            87653 22456666666665544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.16  E-value=0.0041  Score=45.27  Aligned_cols=64  Identities=17%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-----G-VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKAL  124 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  124 (153)
                      ..+++.+...|...|++++|+.++++...-     | -.|+..                 .+++.+-..|...|++++|.
T Consensus       329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a-----------------~~l~nLa~~~~~~g~~~eA~  391 (429)
T 3qwp_A          329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG-----------------VQVMKVGKLQLHQGMFPQAM  391 (429)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-----------------HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH-----------------HHHHHHHHHHHhcCCHHHHH
Confidence            378999999999999999999999987652     2 223322                 47999999999999999999


Q ss_pred             HHHHHHH
Q 047010          125 LLLFLMY  131 (153)
Q Consensus       125 ~~~~~m~  131 (153)
                      .++++..
T Consensus       392 ~~~~~Al  398 (429)
T 3qwp_A          392 KNLRLAF  398 (429)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.15  E-value=0.013  Score=36.13  Aligned_cols=84  Identities=14%  Similarity=0.067  Sum_probs=65.5

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .+...|..+-..+.+.|++++|.+.|++..+..  |+                 +...|..+-..|.+.|++++|...|+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~   69 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PA-----------------NPIYLSNRAAAYSASGQHEKAAEDAE   69 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Cc-----------------CHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            356778888899999999999999999987753  22                 34588899999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          129 LMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       129 ~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      +..+.. .-+...|..+-..+.+.
T Consensus        70 ~al~~~-p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           70 LATVVD-PKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHc
Confidence            987754 22456666665555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.14  E-value=0.0074  Score=34.21  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-..|.+.|++++|.+.|++..+..  |+                 +...|..+-.+|...|++++|...|++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~   66 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PD-----------------YVGTYYHLGKLYERLDRTDDAIDTYAQ   66 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66788899999999999999999999988753  22                 234888999999999999999999998


Q ss_pred             HHHC-CCCCCHHHHHHHHHHh
Q 047010          130 MYEH-GKIPSRTLYDTLIKKL  149 (153)
Q Consensus       130 m~~~-~v~p~~~~~~~li~~~  149 (153)
                      ..+. .-.++.....-+-..+
T Consensus        67 al~l~~~~~~~~~~~~l~~~l   87 (100)
T 3ma5_A           67 GIEVAREEGTQKDLSELQDAK   87 (100)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHhhhhcCCchhHHHHHHHHH
Confidence            7643 1234454444444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.011  Score=33.53  Aligned_cols=67  Identities=15%  Similarity=0.179  Sum_probs=55.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      ++...|..+-..+.+.|++++|.+.|++..+..  |+                 +...|..+-.++.+.|++++|...++
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~   62 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQ-----------------NPVGYSNKAMALIKLGEYTQAIQMCQ   62 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-----------------CHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            356678888889999999999999999987752  22                 34578888999999999999999999


Q ss_pred             HHHHCC
Q 047010          129 LMYEHG  134 (153)
Q Consensus       129 ~m~~~~  134 (153)
                      +..+..
T Consensus        63 ~al~~~   68 (111)
T 2l6j_A           63 QGLRYT   68 (111)
T ss_dssp             HHHTSC
T ss_pred             HHHHhC
Confidence            987643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.13  E-value=0.012  Score=33.90  Aligned_cols=77  Identities=13%  Similarity=0.123  Sum_probs=60.3

Q ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH
Q 047010           36 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALC  115 (153)
Q Consensus        36 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~  115 (153)
                      .+.+++..... +.+...|..+-..|.+.|++++|.+.|++..+..  |+                 +...|..+-..+.
T Consensus         5 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~la~~~~   64 (115)
T 2kat_A            5 TERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PT-----------------YSVAWKWLGKTLQ   64 (115)
T ss_dssp             HHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CC-----------------cHHHHHHHHHHHH
Confidence            44555554432 2467889999999999999999999999988753  22                 3347888899999


Q ss_pred             ccCcHHHHHHHHHHHHH
Q 047010          116 GVGKIDKALLLLFLMYE  132 (153)
Q Consensus       116 ~~g~~~~a~~~~~~m~~  132 (153)
                      ..|++++|...|++..+
T Consensus        65 ~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A           65 GQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            99999999999998765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.09  E-value=0.015  Score=35.04  Aligned_cols=82  Identities=9%  Similarity=-0.089  Sum_probs=60.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...+..+-..+.+.|++++|.+.|++.....  |+                 +...|..+-..+.+.|++++|...|++
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~   77 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HY-----------------DARYFLGLGACRQSLGLYEQALQSYSY   77 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--Cc-----------------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33556667778899999999999999987753  32                 345788888999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhhc
Q 047010          130 MYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      ..+..- -+...+..+-.++..
T Consensus        78 al~~~p-~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           78 GALMDI-NEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHCT-TCTHHHHHHHHHHHH
T ss_pred             HHhcCC-CCcHHHHHHHHHHHH
Confidence            877541 234444444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.08  E-value=0.014  Score=33.77  Aligned_cols=84  Identities=15%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .+...|..+-..+...|++++|.+.|++.....  |+                 +...|..+...+...|++++|...++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~   70 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PA-----------------NAVYFCNRAAAYSKLGNYAGAVQDCE   70 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CC-----------------CHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            355778888899999999999999999987653  21                 34578888999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          129 LMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       129 ~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ...+.. ..+...+..+-..+.+.
T Consensus        71 ~~~~~~-~~~~~~~~~~~~~~~~~   93 (131)
T 2vyi_A           71 RAICID-PAYSKAYGRMGLALSSL   93 (131)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHhcC-ccCHHHHHHHHHHHHHh
Confidence            987653 23455666665555543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.07  E-value=0.0091  Score=40.64  Aligned_cols=64  Identities=16%  Similarity=0.072  Sum_probs=45.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-.+|.+.|++++|.+.+++..+.  .|+                 +...+..+-.++...|++++|...|+.
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           37 VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQ-----------------SVKAHFFLGQCQLEMESYDEAIANLQR   97 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5667777777788888888888888776553  232                 334677777778888888888888876


Q ss_pred             HHH
Q 047010          130 MYE  132 (153)
Q Consensus       130 m~~  132 (153)
                      ..+
T Consensus        98 al~  100 (281)
T 2c2l_A           98 AYS  100 (281)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.07  E-value=0.018  Score=40.27  Aligned_cols=96  Identities=11%  Similarity=-0.052  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHcCCCcc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 047010           34 EAYEMLMNVKNDGLKPD--------------VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIG   99 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~--------------~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~   99 (153)
                      .|...|++.........              ...|..+-.+|.+.|++++|.+.|++..+..  |+              
T Consensus       165 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~--------------  228 (336)
T 1p5q_A          165 QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SN--------------  228 (336)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------
T ss_pred             HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------------
Confidence            77788877776543322              5889999999999999999999999988753  32              


Q ss_pred             CCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010          100 HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       100 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~  149 (153)
                         +...|..+-.+|...|++++|...|++..+.. .-+...+..+-..+
T Consensus       229 ---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          229 ---NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  274 (336)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence               34588899999999999999999999987753 12344554444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.07  E-value=0.0074  Score=41.18  Aligned_cols=69  Identities=7%  Similarity=-0.116  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKV-GRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        52 ~t~~~ll~~~~~~-g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      .+|+.+-..|... |++++|.+.|++..+..  |            ..+..+ ...+|+.+...+.+.|++++|...|++
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWY--A------------QDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--H------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--H------------hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3555555666664 66666666666554311  0            000000 024688889999999999999999999


Q ss_pred             HHHCC
Q 047010          130 MYEHG  134 (153)
Q Consensus       130 m~~~~  134 (153)
                      ..+..
T Consensus       184 al~~~  188 (292)
T 1qqe_A          184 LIKSS  188 (292)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            87754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.016  Score=33.95  Aligned_cols=82  Identities=12%  Similarity=0.006  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ...|..+-..+.+.|++++|.+.|++..+..  |+                 +...|..+-.++.+.|++++|...|++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PE-----------------DARGYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-----------------ChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4567777788999999999999999987753  22                 3458999999999999999999999998


Q ss_pred             HHCCCCCCHHHHHHHHHHhhcC
Q 047010          131 YEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       131 ~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      .+.. .-+...|..+-.++.+.
T Consensus        65 l~~~-p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A           65 IEKD-PNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHhC-CCcHHHHHHHHHHHHHH
Confidence            7754 22355555555555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.02  E-value=0.01  Score=37.58  Aligned_cols=130  Identities=10%  Similarity=0.004  Sum_probs=70.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHH----cCCCc-cHHHHHHHHHHHHhcC
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKN----DGLKP-DVYTYTAVMDGFCKVG   65 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~----~g~~~-~~~t~~~ll~~~~~~g   65 (153)
                      ....|++++|..+++..... .......+..+           .|...+++...    .+..+ ....+..+-..|...|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            34578888888855544331 11122333333           56666655443    22222 3466777777888888


Q ss_pred             CHHHHHHHHHHHHHc----CCCchHHH--H-----------------HHHHHHH---HcCCCCc--HhhHHHHHHHHHcc
Q 047010           66 RSNEVMELLNEAIER----GVTPNVVT--L-----------------IHLHNVI---DIGHIPR--TITFNNVIQALCGV  117 (153)
Q Consensus        66 ~~~~a~~l~~~m~~~----~~~~~~~~--~-----------------~~~~~~~---~~~~~~~--~~~~~~li~~~~~~  117 (153)
                      ++++|.+.+++..+.    +-.|....  +                 ..+.+..   .....+.  ..++..+-..+...
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence            888888888876553    21221111  1                 1111111   1111121  23467888889999


Q ss_pred             CcHHHHHHHHHHHHH
Q 047010          118 GKIDKALLLLFLMYE  132 (153)
Q Consensus       118 g~~~~a~~~~~~m~~  132 (153)
                      |++++|...+++..+
T Consensus       161 g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          161 KNLLEAQQHWLRARD  175 (203)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999987753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.98  E-value=0.0072  Score=41.25  Aligned_cols=79  Identities=18%  Similarity=0.132  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010           35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL  114 (153)
Q Consensus        35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  114 (153)
                      +.+.+++..... +.+...+..+-..+.+.|++++|++.|.+..+..  |+.               .+...+..+...+
T Consensus       204 a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~---------------~~~~a~~~l~~~~  265 (287)
T 3qou_A          204 EIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTA---------------ADGQTRXTFQEIL  265 (287)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTG---------------GGGHHHHHHHHHH
T ss_pred             cHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--ccc---------------ccchHHHHHHHHH
Confidence            334444443332 2356777788888888888888888888887753  211               1245889999999


Q ss_pred             HccCcHHHHHHHHHHHH
Q 047010          115 CGVGKIDKALLLLFLMY  131 (153)
Q Consensus       115 ~~~g~~~~a~~~~~~m~  131 (153)
                      ...|+.++|...+++-.
T Consensus       266 ~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          266 AALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HHcCCCCcHHHHHHHHH
Confidence            99999999988887653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.91  E-value=0.0094  Score=35.84  Aligned_cols=117  Identities=9%  Similarity=0.014  Sum_probs=73.3

Q ss_pred             ccccCChHHHHHHHHHHHHCCCC-CCh----hhchHH-----------HHHHHHHHHHHc----CCCc-cHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYH-PNV----TTYTIL-----------EAYEMLMNVKND----GLKP-DVYTYTAVMDG   60 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l-----------~a~~~~~~m~~~----g~~~-~~~t~~~ll~~   60 (153)
                      |...|++++|...+....+..-. ++.    ..+..+           +|...+++....    +-.+ ....+..+-..
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~   98 (164)
T 3ro3_A           19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT   98 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            34568899999998887764211 111    122222           555555554322    1111 24567778888


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           61 FCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      +...|++++|.+.+++..+... ..+..              .....+..+-..+...|++++|...+++..+
T Consensus        99 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           99 YTLLQDYEKAIDYHLKHLAIAQELKDRI--------------GEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHccchH--------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            8889999999998887754210 00000              1134678888899999999999999988754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.90  E-value=0.012  Score=40.93  Aligned_cols=95  Identities=15%  Similarity=0.103  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 047010           35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQAL  114 (153)
Q Consensus        35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  114 (153)
                      +...++++...+ .++..++-.+-..+...|++++|++++.+-...+-.++                 +...+-..+..+
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~-----------------~lea~~l~vqi~  146 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG-----------------TTELLLLAIEVA  146 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT-----------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC-----------------cHHHHHHHHHHH
Confidence            344555554443 45666667888889999999999999998766543222                 235888999999


Q ss_pred             HccCcHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHh
Q 047010          115 CGVGKIDKALLLLFLMYEHGKIP-----SRTLYDTLIKKL  149 (153)
Q Consensus       115 ~~~g~~~~a~~~~~~m~~~~v~p-----~~~~~~~li~~~  149 (153)
                      .+.|+.+.|...+++|.+.  .|     +..+...|..++
T Consensus       147 L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~  184 (310)
T 3mv2_B          147 LLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESY  184 (310)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHH
Confidence            9999999999999999774  46     467777777664

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.90  E-value=0.048  Score=37.00  Aligned_cols=115  Identities=10%  Similarity=0.004  Sum_probs=78.1

Q ss_pred             cccCChHHHHHHHHHHHHCCCC-CCh----hhchHH-----------HHHHHHHHHHH----c-CCCcc-HHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYH-PNV----TTYTIL-----------EAYEMLMNVKN----D-GLKPD-VYTYTAVMDG   60 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l-----------~a~~~~~~m~~----~-g~~~~-~~t~~~ll~~   60 (153)
                      ...+++++|...|....+.... ++.    ..++.+           .|...+++..+    . +..+. ..+|..+-..
T Consensus       126 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~  205 (293)
T 3u3w_A          126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA  205 (293)
T ss_dssp             TTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             HcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            4567899999999999884322 222    134444           66777766552    1 22222 3478999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHccC-cHHHHHHHHHHHH
Q 047010           61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR-TITFNNVIQALCGVG-KIDKALLLLFLMY  131 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~  131 (153)
                      |.+.|++++|.+.+++..+...              ..+..+. ..+|..+-..|.+.| ++++|...+++..
T Consensus       206 y~~~~~y~~A~~~~~~al~~~~--------------~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          206 LYLDSRYEESLYQVNKAIEISC--------------RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHH--------------HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHH--------------HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999999999999998765210              0111111 347888888999999 5799999888764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.89  E-value=0.017  Score=36.46  Aligned_cols=84  Identities=10%  Similarity=-0.052  Sum_probs=57.5

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCchHH-HH-----------------HHHHHHH----HcCCCC
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE----RGVTPNVV-TL-----------------IHLHNVI----DIGHIP  102 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~-~~-----------------~~~~~~~----~~~~~~  102 (153)
                      .....+..+-..+...|++++|.+.+++...    .+..|... ++                 ..+.+..    ..+..|
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            4668899999999999999999999998766    22222222 11                 1222211    222122


Q ss_pred             --cHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010          103 --RTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       103 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                        ....+..+-..+...|++++|...+++..+
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence              235688888899999999999999988753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.87  E-value=0.026  Score=33.53  Aligned_cols=85  Identities=12%  Similarity=0.012  Sum_probs=63.1

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      .+...|..+-..+.+.|++++|.+.|++..+..  |+..              -....|..+...|...|++++|...++
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~   89 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQ--------------DQAVLHRNRAACHLKLEDYDKAETEAS   89 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccch--------------HHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            467888999999999999999999999987653  3320              003478888889999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHhh
Q 047010          129 LMYEHGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       129 ~m~~~~v~p~~~~~~~li~~~~  150 (153)
                      ...+.. ..+...+..+-..+.
T Consensus        90 ~~~~~~-~~~~~~~~~~a~~~~  110 (148)
T 2dba_A           90 KAIEKD-GGDVKALYRRSQALE  110 (148)
T ss_dssp             HHHHHT-SCCHHHHHHHHHHHH
T ss_pred             HHHhhC-ccCHHHHHHHHHHHH
Confidence            887653 124555555544443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.84  E-value=0.016  Score=33.57  Aligned_cols=83  Identities=13%  Similarity=0.079  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ...|..+-..+...|++++|...|++..+..  |                 .+...+..+...+...|++++|...++..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--P-----------------TNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C-----------------ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4567888889999999999999999987753  2                 13457888889999999999999999988


Q ss_pred             HHCC--CCCC----HHHHHHHHHHhhcC
Q 047010          131 YEHG--KIPS----RTLYDTLIKKLDQQ  152 (153)
Q Consensus       131 ~~~~--v~p~----~~~~~~li~~~~~~  152 (153)
                      .+..  ..++    ...+..+-..+.+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~   92 (131)
T 1elr_A           65 IEVGRENREDYRQIAKAYARIGNSYFKE   92 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHh
Confidence            6542  1223    45555555555443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.82  E-value=0.029  Score=33.24  Aligned_cols=81  Identities=19%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ..|...=..|.+.|++++|.+.|++..+..  |+                 +...|..+-.+|.+.|++++|...|++..
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PE-----------------NAILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            556677778999999999999999987653  32                 34588899999999999999999999987


Q ss_pred             HCCCCCCHHHHHHHHHHhhcC
Q 047010          132 EHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       132 ~~~v~p~~~~~~~li~~~~~~  152 (153)
                      +.+ ..+...|..+-.++.+.
T Consensus        75 ~~~-p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           75 RLD-SKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHT
T ss_pred             Hhh-hhhhHHHHHHHHHHHHC
Confidence            754 23455666665555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.80  E-value=0.008  Score=43.39  Aligned_cols=138  Identities=13%  Similarity=0.058  Sum_probs=68.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCC-hhhchHH------------------------------HHHHHHHHHHHcCCCcc
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL------------------------------EAYEMLMNVKNDGLKPD   50 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l------------------------------~a~~~~~~m~~~g~~~~   50 (153)
                      |.+.|++++|...+....+..  |+ ...+..+                              .+...+.+..... +.+
T Consensus       257 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~  333 (472)
T 4g1t_A          257 YRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNL  333 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTT
T ss_pred             HHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cch
Confidence            345677888888888777642  33 2233222                              2333333333321 234


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHH--H------------------HHHHH----------------
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVT--L------------------IHLHN----------------   94 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~--~------------------~~~~~----------------   94 (153)
                      ...|..+-..|.+.|++++|.+.|++..+....+....  +                  .....                
T Consensus       334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~  413 (472)
T 4g1t_A          334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD  413 (472)
T ss_dssp             CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            45677788888889999999999988877654443321  1                  00000                


Q ss_pred             ----HHH---cCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC-CCCCHHHH
Q 047010           95 ----VID---IGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG-KIPSRTLY  142 (153)
Q Consensus        95 ----~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-v~p~~~~~  142 (153)
                          +..   .....+..+|+.+-..|...|++++|...|++..+.+ ..|+..+|
T Consensus       414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence                000   0122355788888889999999999999999887643 44555544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.80  E-value=0.0046  Score=47.52  Aligned_cols=45  Identities=16%  Similarity=-0.147  Sum_probs=32.1

Q ss_pred             cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh
Q 047010          103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSR-TLYDTLIKKL  149 (153)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~-~~~~~li~~~  149 (153)
                      +...|..+-..+.+.|++++|...|++..+.  .|+. ..+..+-.++
T Consensus       533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          533 VISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTL  578 (681)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHH
Confidence            3457888888999999999999999887654  4653 3444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.76  E-value=0.031  Score=42.96  Aligned_cols=127  Identities=7%  Similarity=-0.101  Sum_probs=85.6

Q ss_pred             ccCChHHHHHHHHHHHHC------CCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 047010            4 NKNDFFEARKVIDYMFDN------GYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG   65 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~------~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g   65 (153)
                      ..|++++|...++...+.      ...|+ ...+..+           +|.+.+++..+.. +-+...|..+=.+|.+.|
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcC
Confidence            467888999999888710      12233 2333322           7777777766542 235677888888888999


Q ss_pred             CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047010           66 RSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTL  145 (153)
Q Consensus        66 ~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~l  145 (153)
                      ++++|.+.|++..+..  |+                 +...|..+-..+.+.|++++ ...|++..+.+ .-+...|..+
T Consensus       482 ~~~~A~~~~~~al~l~--P~-----------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~l  540 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTF--PG-----------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGL  540 (681)
T ss_dssp             CHHHHHHHHHHHHHHS--TT-----------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC--CC-----------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHH
Confidence            9999999998887643  21                 23477888888889999999 88888887643 1244556655


Q ss_pred             HHHhhcC
Q 047010          146 IKKLDQQ  152 (153)
Q Consensus       146 i~~~~~~  152 (153)
                      -.++.+.
T Consensus       541 g~~~~~~  547 (681)
T 2pzi_A          541 ARARSAE  547 (681)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            5555544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.73  E-value=0.046  Score=38.49  Aligned_cols=131  Identities=11%  Similarity=0.087  Sum_probs=80.9

Q ss_pred             cccCChHHHHHHHHHHHHCCC-CCCh----hhchHH-----------HHHHHHHHHHH---c-CC-Cc-cHHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGY-HPNV----TTYTIL-----------EAYEMLMNVKN---D-GL-KP-DVYTYTAVMDG   60 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l-----------~a~~~~~~m~~---~-g~-~~-~~~t~~~ll~~   60 (153)
                      ...|++++|...|....+.-- .++.    ..+..+           .|...+.+...   . +- .+ ...+++.+-..
T Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  191 (378)
T 3q15_A          112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN  191 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence            457899999999999876421 1222    122222           55555554332   2 11 11 34678888899


Q ss_pred             HHhcCCHHHHHHHHHHHHHc----CCCchHH-HH-----------------HHHHHHHH----cCCCCcHhhHHHHHHHH
Q 047010           61 FCKVGRSNEVMELLNEAIER----GVTPNVV-TL-----------------IHLHNVID----IGHIPRTITFNNVIQAL  114 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~----~~~~~~~-~~-----------------~~~~~~~~----~~~~~~~~~~~~li~~~  114 (153)
                      |...|++++|.+.|++..+.    +-++... ++                 ..+.....    .+......++..+-..+
T Consensus       192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  271 (378)
T 3q15_A          192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL  271 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence            99999999999999987652    2111111 11                 11122111    13333356788888888


Q ss_pred             HccCcHHHHHHHHHHHHHC
Q 047010          115 CGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       115 ~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+.|++++|...+++..+.
T Consensus       272 ~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          272 CKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            8999999999999888774

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.69  E-value=0.068  Score=37.60  Aligned_cols=131  Identities=8%  Similarity=0.052  Sum_probs=81.1

Q ss_pred             ccccCChHHHHHHHHHHHHCCC-CCCh----hhchHH-----------HHHHHHHHHHH----cCCCccHHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGY-HPNV----TTYTIL-----------EAYEMLMNVKN----DGLKPDVYTYTAVMDGF   61 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l-----------~a~~~~~~m~~----~g~~~~~~t~~~ll~~~   61 (153)
                      |...|++++|...|....+..- .++.    .++..+           .|...+.+...    .+.+....++..+-..|
T Consensus       192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  271 (378)
T 3q15_A          192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL  271 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence            4567899999999888776310 1111    122222           66666665554    12233467888999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCC----CchHHHHHHHHH-----------------HHHcCCCCcH-hhHHHHHHHHHccCc
Q 047010           62 CKVGRSNEVMELLNEAIERGV----TPNVVTLIHLHN-----------------VIDIGHIPRT-ITFNNVIQALCGVGK  119 (153)
Q Consensus        62 ~~~g~~~~a~~l~~~m~~~~~----~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~~~li~~~~~~g~  119 (153)
                      .+.|++++|.+.+++..+...    +.....+..+..                 ..+.+..|+. ..+..+-..|...|+
T Consensus       272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~  351 (378)
T 3q15_A          272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH  351 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCC
Confidence            999999999999999877421    111122222211                 1122222222 356678888889999


Q ss_pred             HHHHHHHHHHHHH
Q 047010          120 IDKALLLLFLMYE  132 (153)
Q Consensus       120 ~~~a~~~~~~m~~  132 (153)
                      +++|...|++..+
T Consensus       352 ~~~A~~~~~~al~  364 (378)
T 3q15_A          352 FEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.68  E-value=0.0098  Score=44.08  Aligned_cols=67  Identities=12%  Similarity=-0.042  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHcCCCCcH-hhHHHHHHHHHccCcHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER---GVTPNVVTLIHLHNVIDIGHIPRT-ITFNNVIQALCGVGKIDKALLL  126 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~  126 (153)
                      ..+++.|-..|...|++++|+.++++...-   -.-|+               .|++ .+.+.+-.++...+.+++|..+
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~---------------Hp~~~~~~~~l~~~~~e~~~~~~ae~~  457 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS---------------HPITKDLEAMRMQTEMELRMFRQNEFM  457 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---------------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            377999999999999999999999987541   11111               1222 3566777788889999999999


Q ss_pred             HHHHHH
Q 047010          127 LFLMYE  132 (153)
Q Consensus       127 ~~~m~~  132 (153)
                      ++.+++
T Consensus       458 ~~~~~~  463 (490)
T 3n71_A          458 YHKMRE  463 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999975

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.68  E-value=0.057  Score=34.74  Aligned_cols=110  Identities=15%  Similarity=0.079  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHH----HH-----------HHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLI----HL-----------HNVIDI   98 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~----~~-----------~~~~~~   98 (153)
                      +|...+++..+.. +-+...|..+-..|...|++++|.+.|++..+..- -+...+.    +.           ......
T Consensus        72 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~  149 (208)
T 3urz_A           72 KAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKK  149 (208)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4555555544432 23667888888889999999999999998877531 1222220    00           111112


Q ss_pred             CCCCcHh--hHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010           99 GHIPRTI--TFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK  147 (153)
Q Consensus        99 ~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~  147 (153)
                      -..|+..  .+-..-.++...|++++|...|++..+  +.|+......+.+
T Consensus       150 ~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~  198 (208)
T 3urz_A          150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK  198 (208)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred             HhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence            2233332  233334455568899999999999876  4587766655443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.65  E-value=0.05  Score=38.26  Aligned_cols=131  Identities=8%  Similarity=0.018  Sum_probs=80.7

Q ss_pred             ccccCChHHHHHHHHHHHHCCCC-CCh----hhchHH-----------HHHHHHHHHHH----cCC-CccHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYH-PNV----TTYTIL-----------EAYEMLMNVKN----DGL-KPDVYTYTAVMDG   60 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l-----------~a~~~~~~m~~----~g~-~~~~~t~~~ll~~   60 (153)
                      |...|++++|...|....+..-. ++.    .++..+           .|...+.+..+    .+. +....++..+-..
T Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  273 (383)
T 3ulq_A          194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI  273 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            44568999999999887764111 111    133323           66666666554    133 3346778999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCC---CchH-HHHHHH-----------------HHHHHcCCCCc-HhhHHHHHHHHHccC
Q 047010           61 FCKVGRSNEVMELLNEAIERGV---TPNV-VTLIHL-----------------HNVIDIGHIPR-TITFNNVIQALCGVG  118 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~~~---~~~~-~~~~~~-----------------~~~~~~~~~~~-~~~~~~li~~~~~~g  118 (153)
                      |.+.|++++|.+.+++..+...   .|.. ..+..+                 ....+.+..|+ ...+..+-..|...|
T Consensus       274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g  353 (383)
T 3ulq_A          274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERK  353 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999998765311   1111 111111                 11112222222 235777888888999


Q ss_pred             cHHHHHHHHHHHHH
Q 047010          119 KIDKALLLLFLMYE  132 (153)
Q Consensus       119 ~~~~a~~~~~~m~~  132 (153)
                      ++++|...+++..+
T Consensus       354 ~~~~A~~~~~~al~  367 (383)
T 3ulq_A          354 NFQKASAYFLKVEQ  367 (383)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999887753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.63  E-value=0.05  Score=35.44  Aligned_cols=77  Identities=6%  Similarity=-0.086  Sum_probs=49.6

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCCh----hhchHH-----------HHHHHHHHHHHcCCCccH--HHHHHHHHHHH--
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNV----TTYTIL-----------EAYEMLMNVKNDGLKPDV--YTYTAVMDGFC--   62 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l-----------~a~~~~~~m~~~g~~~~~--~t~~~ll~~~~--   62 (153)
                      +.+.|++++|...|+.+.+..  |+.    ..+..+           .|...++++.+.......  ..+-.+-.++.  
T Consensus        14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~   91 (225)
T 2yhc_A           14 KLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL   91 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence            346799999999999998853  331    122222           888888888776432211  13333333333  


Q ss_pred             ----------------hcCCHHHHHHHHHHHHHc
Q 047010           63 ----------------KVGRSNEVMELLNEAIER   80 (153)
Q Consensus        63 ----------------~~g~~~~a~~l~~~m~~~   80 (153)
                                      ..|+.++|...|++..+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  125 (225)
T 2yhc_A           92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG  125 (225)
T ss_dssp             HC--------------CCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence                            367899999999998775

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.58  E-value=0.069  Score=34.52  Aligned_cols=71  Identities=13%  Similarity=0.132  Sum_probs=38.3

Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhchHH--------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCC
Q 047010            5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL--------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGR   66 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~g~   66 (153)
                      .+++++|...|....+.|.   ...+..+              +|...+++..+.|   +...+..|=..|..    .++
T Consensus        31 ~~~~~~A~~~~~~a~~~g~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d  104 (212)
T 3rjv_A           31 SGDYQKAEYWAQKAAAQGD---GDALALLAQLKIRNPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATD  104 (212)
T ss_dssp             HTCHHHHHHHHHHHHHTTC---HHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCC
T ss_pred             CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccC
Confidence            4566667666666666542   2222211              4555555554443   44455555555554    566


Q ss_pred             HHHHHHHHHHHHHcC
Q 047010           67 SNEVMELLNEAIERG   81 (153)
Q Consensus        67 ~~~a~~l~~~m~~~~   81 (153)
                      +++|.+.|++..+.|
T Consensus       105 ~~~A~~~~~~A~~~~  119 (212)
T 3rjv_A          105 VAHAITLLQDAARDS  119 (212)
T ss_dssp             HHHHHHHHHHHTSST
T ss_pred             HHHHHHHHHHHHHcC
Confidence            666666666665544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.58  E-value=0.04  Score=42.54  Aligned_cols=127  Identities=16%  Similarity=0.154  Sum_probs=86.9

Q ss_pred             ccCChHHHHHHHHHHHHC-C-CCCChhhchHH----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDN-G-YHPNVTTYTIL----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~l----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      +.|+.+.|+.+|....+. + ..+......+.          .|..+|....+. .+-+..-|...++.....|+.+.|.
T Consensus       446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR  524 (679)
T 4e6h_A          446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK  524 (679)
T ss_dssp             HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence            346788899999998875 2 11222221111          566677666555 3345566778888888888999999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010           72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus        72 ~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~  149 (153)
                      .+|++.......++.                ....|...+.--.+.|+.+.+..+.+++.+.-  |+......+++-|
T Consensus       525 ~lferal~~~~~~~~----------------~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry  584 (679)
T 4e6h_A          525 SLFESSIDKISDSHL----------------LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHTTTSSSTTH----------------HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHH----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence            999987765432211                23589999999999999999999999998753  5555666666554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.58  E-value=0.027  Score=40.01  Aligned_cols=66  Identities=20%  Similarity=0.101  Sum_probs=55.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-.+|.+.|++++|.+.+++..+.  .|+                 +...|..+-.+|...|++++|...|++
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~-----------------~~~a~~~lg~~~~~~g~~~eA~~~l~~  332 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPS-----------------NTKALYRRAQGWQGLKEYDQALADLKK  332 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cch-----------------hHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5578899999999999999999999998864  232                 345788888999999999999999999


Q ss_pred             HHHCC
Q 047010          130 MYEHG  134 (153)
Q Consensus       130 m~~~~  134 (153)
                      ..+..
T Consensus       333 Al~l~  337 (370)
T 1ihg_A          333 AQEIA  337 (370)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            87653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.51  E-value=0.038  Score=38.63  Aligned_cols=103  Identities=12%  Similarity=0.069  Sum_probs=71.6

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      +.+.|++++|...|....+.  .|+...+... .-.+....+       ....|..+-.+|.+.|++++|.+.+++..+.
T Consensus       189 ~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l-------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  259 (338)
T 2if4_A          189 LFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAV-------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTE  259 (338)
T ss_dssp             TCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHH-------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45678888888888887664  2433322111 000111111       1137888999999999999999999998775


Q ss_pred             CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           81 GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .  |+                 +...|..+-.+|...|++++|...|++..+
T Consensus       260 ~--p~-----------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          260 E--EK-----------------NPKALFRRGKAKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             C--TT-----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             C--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3  32                 345888899999999999999999998765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.50  E-value=0.058  Score=33.42  Aligned_cols=98  Identities=5%  Similarity=-0.032  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      .|...+.+..... +.+...|..+-..|...|++++|.+.|++..+..  |+                 +...|..+...
T Consensus        28 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~la~~   87 (177)
T 2e2e_A           28 AQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GE-----------------NAELYAALATV   87 (177)
T ss_dssp             CCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CS-----------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-----------------CHHHHHHHHHH
Confidence            3445555554442 3467889999999999999999999999987643  21                 23467777777


Q ss_pred             -HHccCcH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          114 -LCGVGKI--DKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       114 -~~~~g~~--~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                       +...|++  ++|...|+...+.. .-+...+..+-..+.+.
T Consensus        88 l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  128 (177)
T 2e2e_A           88 LYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQ  128 (177)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence             7788998  99999999987754 12355565555555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.50  E-value=0.02  Score=40.46  Aligned_cols=112  Identities=13%  Similarity=0.090  Sum_probs=77.2

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCCh-----hhchHH-----------HHHHHHHHHHHc----CC-CccHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNV-----TTYTIL-----------EAYEMLMNVKND----GL-KPDVYTYTAVMDG   60 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l-----------~a~~~~~~m~~~----g~-~~~~~t~~~ll~~   60 (153)
                      +.+.|++++|...|+...+.+  |+.     ..|..+           .|...+++..+.    +- ......|..+-..
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  135 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT  135 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            346789999999999998863  332     233333           556665554332    11 2244678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCc-----------------
Q 047010           61 FCKVGRSNEVMELLNEAIERG----VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK-----------------  119 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------------  119 (153)
                      |...|++++|.+.+++..+..    -.|                 ....++..+-..|...|+                 
T Consensus       136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~  198 (411)
T 4a1s_A          136 LKVMGRFDEAAICCERHLTLARQLGDRL-----------------SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA  198 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhhchH-----------------HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence            999999999999998876531    111                 123478888899999999                 


Q ss_pred             HHHHHHHHHHHHH
Q 047010          120 IDKALLLLFLMYE  132 (153)
Q Consensus       120 ~~~a~~~~~~m~~  132 (153)
                      +++|...+++..+
T Consensus       199 ~~~A~~~~~~al~  211 (411)
T 4a1s_A          199 LTRAVEFYQENLK  211 (411)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.46  E-value=0.017  Score=39.15  Aligned_cols=30  Identities=17%  Similarity=0.062  Sum_probs=25.8

Q ss_pred             HhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010          104 TITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      ..++..+...|.+.|++++|...+++..+.
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            347888999999999999999999988653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.42  E-value=0.0078  Score=35.01  Aligned_cols=76  Identities=17%  Similarity=0.024  Sum_probs=54.2

Q ss_pred             ccCChHHHHHHHHHHHHCCC--CCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGY--HPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      ..|++++|...|+...+.+.  +-+...+..+           +|...+++..+... -+...|..+-.++.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence            46889999999999988541  2222333333           88888888877643 3577888899999999999999


Q ss_pred             HHHHHHHHHc
Q 047010           71 MELLNEAIER   80 (153)
Q Consensus        71 ~~l~~~m~~~   80 (153)
                      .+.|++..+.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.42  E-value=0.024  Score=38.96  Aligned_cols=122  Identities=11%  Similarity=-0.004  Sum_probs=80.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChh-hchHH----------HHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVT-TYTIL----------EAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKVGRSN   68 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l----------~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~g~~~   68 (153)
                      +...|++++|..+|+.+...+  |+.. .|..-          +++..|+...... .|.  ...+..+=.++.+.|+++
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~  188 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFT  188 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHH
Confidence            345789999999999887654  4332 22221          5666665332221 111  235667777899999999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010           69 EVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT  144 (153)
Q Consensus        69 ~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~  144 (153)
                      +|++.|++.......|..                ........-.++.+.|+.++|...|+++....  |+...+..
T Consensus       189 eAl~~l~~a~~g~~~P~~----------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~a  246 (282)
T 4f3v_A          189 EAERRLTEANDSPAGEAC----------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAA  246 (282)
T ss_dssp             HHHHHHHHHHTSTTTTTT----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCccc----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHH
Confidence            999999988754332431                12355666778889999999999999998754  55443333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.41  E-value=0.067  Score=32.38  Aligned_cols=81  Identities=11%  Similarity=0.013  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      .|...+.+..... +.+...|..+-..+.+.|++++|.+.+++..+..  |+                 +...|..+...
T Consensus        31 ~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------~~~~~~~~a~~   90 (166)
T 1a17_A           31 NAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KK-----------------YIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-----------------cHHHHHHHHHH
Confidence            6777777766543 2367888889999999999999999999987753  21                 34478888889


Q ss_pred             HHccCcHHHHHHHHHHHHHCC
Q 047010          114 LCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      +...|++++|...|++..+..
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHhccHHHHHHHHHHHHHhC
Confidence            999999999999999987653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.32  E-value=0.075  Score=31.98  Aligned_cols=105  Identities=9%  Similarity=-0.081  Sum_probs=78.6

Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhchHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 047010            5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGRSNEVME   72 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~g~~~~a~~   72 (153)
                      ..|+++|...|....+.|. |... ...+        .|...+++--+.|   +...+..|=..|..    .++.++|.+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~-~~a~-lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE-MFGC-LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-TTHH-HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCC-Hhhh-HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            4578899999999999883 3333 2222        6788888777764   66777777777777    789999999


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHc----cCcHHHHHHHHHHHHHCCC
Q 047010           73 LLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG----VGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus        73 l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~v  135 (153)
                      .|++-.+.|.+                     ..+..+-..|..    .+++++|...|++..+.|.
T Consensus        83 ~~~~Aa~~g~~---------------------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           83 YYSKACGLNDQ---------------------DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHTTCH---------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCH---------------------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999887642                     255566666666    7899999999999888763

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.31  E-value=0.13  Score=34.77  Aligned_cols=132  Identities=10%  Similarity=-0.002  Sum_probs=83.7

Q ss_pred             cccCChHHHHHHHHHHHHCCCC-CC----hhhchHH-----------HHHHHHHHHH---Hc-CCCc--cHHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYH-PN----VTTYTIL-----------EAYEMLMNVK---ND-GLKP--DVYTYTAVMDG   60 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l-----------~a~~~~~~m~---~~-g~~~--~~~t~~~ll~~   60 (153)
                      ...|++++|...+....+.... .+    ...|+.+           .|...+++..   +. .-.+  ...+|..+-..
T Consensus       126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~  205 (293)
T 2qfc_A          126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA  205 (293)
T ss_dssp             HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence            4568999999999988764211 11    1234333           7777777655   22 1112  22689999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHccCcHHHH-HHHHHHHH----HCC
Q 047010           61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP-RTITFNNVIQALCGVGKIDKA-LLLLFLMY----EHG  134 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~----~~~  134 (153)
                      |.+.|++++|.+.+++..+..  ++            .+... -..+|..+-..|.+.|++++| ...+++..    ..+
T Consensus       206 y~~~~~y~~Al~~~~kal~~~--~~------------~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~  271 (293)
T 2qfc_A          206 LYLDSRYEESLYQVNKAIEIS--CR------------INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE  271 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH--HH------------TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHHH--Hh------------cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999876531  00            00011 134788888999999999999 77676653    223


Q ss_pred             CCCCHHHHHHHHHH
Q 047010          135 KIPSRTLYDTLIKK  148 (153)
Q Consensus       135 v~p~~~~~~~li~~  148 (153)
                      -.+-...+..+|..
T Consensus       272 ~~~~~~~~~~~~~~  285 (293)
T 2qfc_A          272 MHAYKEALVNKISR  285 (293)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHhhHHHHHHHHHH
Confidence            32334444455443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.28  E-value=0.021  Score=40.38  Aligned_cols=117  Identities=14%  Similarity=0.083  Sum_probs=69.6

Q ss_pred             ccccCChHHHHHHHHHHHHCCCC-CCh----hhchHH-----------HHHHHHHHHHHcC----CC-ccHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYH-PNV----TTYTIL-----------EAYEMLMNVKNDG----LK-PDVYTYTAVMDG   60 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l-----------~a~~~~~~m~~~g----~~-~~~~t~~~ll~~   60 (153)
                      |...|++++|...++...+..-. ++.    ..+..+           +|...+++.....    .. ....++..+-..
T Consensus       233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  312 (411)
T 4a1s_A          233 YYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNT  312 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34567788888887776653110 110    122222           5555555443221    10 124567777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC-CCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGH-IPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      |.+.|++++|.+.+++.......              .+. .....++..+...|.+.|++++|...|++..+
T Consensus       313 ~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          313 YTLLHEFNTAIEYHNRHLAIAQE--------------LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH--------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHH--------------CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            88888888888887776542100              000 01134788889999999999999999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.28  E-value=0.13  Score=34.81  Aligned_cols=83  Identities=13%  Similarity=-0.041  Sum_probs=63.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...+..+-..+.+.|++++|.+.|++..+..  |+                 +...|..+-..|.+.|++++|...+++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~   63 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PL-----------------VAVYYTNRALCYLKMQQPEQALADCRR   63 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Cc-----------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            45677888889999999999999999987752  22                 345888999999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhhcC
Q 047010          130 MYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ..+.. .-+...+..+-.++.+.
T Consensus        64 al~~~-p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A           64 ALELD-GQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             HTTSC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHc
Confidence            87653 22455555555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.27  E-value=0.071  Score=31.20  Aligned_cols=77  Identities=12%  Similarity=0.028  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           53 TYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        53 t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .+-.+-..+.+.|++++|...|++..+..  |+                 +...|..+-..+...|++++|...|++..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   79 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PE-----------------REEAWRSLGLTQAENEKDGLAIIALNHARM   79 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555677889999999999999988752  32                 345788888899999999999999999877


Q ss_pred             CCCCC-CHHHHHHHHHHhh
Q 047010          133 HGKIP-SRTLYDTLIKKLD  150 (153)
Q Consensus       133 ~~v~p-~~~~~~~li~~~~  150 (153)
                      ..  | +...+..+-..+.
T Consensus        80 l~--P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           80 LD--PKDIAVHAALAVSHT   96 (121)
T ss_dssp             HC--TTCHHHHHHHHHHHH
T ss_pred             hC--CCCHHHHHHHHHHHH
Confidence            54  4 3445555544443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.18  E-value=0.051  Score=36.94  Aligned_cols=118  Identities=9%  Similarity=-0.102  Sum_probs=73.3

Q ss_pred             ccccCChHHHHHHHHHHHHCCCC-CC----hhhchHH------------HHHHHHHHHHHc----CCCcc-HHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYH-PN----VTTYTIL------------EAYEMLMNVKND----GLKPD-VYTYTAVMD   59 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l------------~a~~~~~~m~~~----g~~~~-~~t~~~ll~   59 (153)
                      |.+.|++++|...++...+.... .+    ..+++.+            .|...+++....    +-.+. ..+|+.+-.
T Consensus        87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~  166 (292)
T 1qqe_A           87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD  166 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            34567888888877776653110 01    1123222            455555544332    11111 356888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        60 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .|.+.|++++|.+.|++..+........             ... ...|..+...+...|++++|...|++..+
T Consensus       167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          167 LKALDGQYIEASDIYSKLIKSSMGNRLS-------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTSSCTTT-------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHhcCCcc-------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999988754221100             000 12567777888899999999999998765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.18  E-value=0.074  Score=38.84  Aligned_cols=64  Identities=9%  Similarity=0.012  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ...|..+-.+|.+.|++++|+..+++..+..  |+                 +...|..+-.+|...|++++|...|++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~a~~~~g~a~~~~g~~~~A~~~~~~a  377 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SA-----------------NEKGLYRRGEAQLLMNEFESAKGDFEKV  377 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-----------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5788889999999999999999999987753  22                 3457888888889999999999999988


Q ss_pred             HHC
Q 047010          131 YEH  133 (153)
Q Consensus       131 ~~~  133 (153)
                      .+.
T Consensus       378 l~l  380 (457)
T 1kt0_A          378 LEV  380 (457)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.16  E-value=0.037  Score=38.69  Aligned_cols=29  Identities=17%  Similarity=0.090  Sum_probs=24.7

Q ss_pred             HhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010          104 TITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      ..++..+-..|...|++++|...+++..+
T Consensus       307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          307 GRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45788888999999999999999988753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.11  E-value=0.048  Score=36.80  Aligned_cols=114  Identities=14%  Similarity=0.119  Sum_probs=77.1

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCCh-----hhchHH-----------HHHHHHHHHHHc----CCCc-cHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNV-----TTYTIL-----------EAYEMLMNVKND----GLKP-DVYTYTAVMDG   60 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l-----------~a~~~~~~m~~~----g~~~-~~~t~~~ll~~   60 (153)
                      +.+.|++++|...|+...+..  |+.     ..+..+           .|.+.+++....    +-.| ....+..+-..
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~   92 (338)
T 3ro2_A           15 LCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT   92 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            346799999999999998863  332     233322           566666554321    2222 35678888899


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCc--------------------
Q 047010           61 FCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGK--------------------  119 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------  119 (153)
                      |...|++++|.+.+++..+... .++..              ....++..+...+...|+                    
T Consensus        93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (338)
T 3ro2_A           93 LKVLGNFDEAIVCCQRHLDISRELNDKV--------------GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA  158 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHHhcCch--------------HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence            9999999999999998765310 01110              113478888888999999                    


Q ss_pred             HHHHHHHHHHHH
Q 047010          120 IDKALLLLFLMY  131 (153)
Q Consensus       120 ~~~a~~~~~~m~  131 (153)
                      +++|...+++..
T Consensus       159 ~~~A~~~~~~a~  170 (338)
T 3ro2_A          159 LQAAVDLYEENL  170 (338)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.88  E-value=0.076  Score=37.06  Aligned_cols=67  Identities=15%  Similarity=0.038  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ..+..+-..+...|++++|...+++.........              ......+|..+-..+...|++++|...+++..
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLE  201 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC--------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455566667777777777777776654321110              00123467788888999999999999999886


Q ss_pred             H
Q 047010          132 E  132 (153)
Q Consensus       132 ~  132 (153)
                      .
T Consensus       202 ~  202 (373)
T 1hz4_A          202 N  202 (373)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=95.87  E-value=0.12  Score=30.43  Aligned_cols=62  Identities=15%  Similarity=0.078  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ..+..+=..+.+.|++++|++.|++..+.  .|+                 +...|+.+-.+|.+.|++++|...+++..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~-----------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPS-----------------NITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            45666667899999999999999998764  233                 34589999999999999999999999876


Q ss_pred             H
Q 047010          132 E  132 (153)
Q Consensus       132 ~  132 (153)
                      +
T Consensus        70 ~   70 (127)
T 4gcn_A           70 E   70 (127)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.76  E-value=0.39  Score=35.41  Aligned_cols=100  Identities=10%  Similarity=-0.014  Sum_probs=62.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--HHHH-------------HHHHHHHc--CCCCc-HhhHH--H
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV--VTLI-------------HLHNVIDI--GHIPR-TITFN--N  109 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~~~~-------------~~~~~~~~--~~~~~-~~~~~--~  109 (153)
                      +...|..+...+.+.|++++|.++|++..+.  .|+.  ..+.             -....+..  ...|+ ...|-  +
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a  397 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  397 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            5788999999999999999999999999885  4432  2331             11112211  11222 22222  2


Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 047010          110 VIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQP  153 (153)
Q Consensus       110 li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~g  153 (153)
                      .+. +...|++++|..+|+...+.. .-+...|..++..+.+.|
T Consensus       398 ~~~-~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g  439 (530)
T 2ooe_A          398 LME-YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLN  439 (530)
T ss_dssp             HHH-HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTT
T ss_pred             HHH-HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCC
Confidence            222 335889999999999876542 224677777777665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.75  E-value=0.48  Score=39.91  Aligned_cols=81  Identities=19%  Similarity=0.147  Sum_probs=44.7

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH---HH-----HHHHHHHHcCCCCcHhhHHHHHHHHHccCcH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV---TL-----IHLHNVIDIGHIPRTITFNNVIQALCGVGKI  120 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  120 (153)
                      -|...|.-++.+|.+.|++++|.+.+..-++..-.|...   .+     .-+..+...--.++...|..+-..|-..|++
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence            466778888999999999999999988765544222111   11     0011111111233444444555555555555


Q ss_pred             HHHHHHHHH
Q 047010          121 DKALLLLFL  129 (153)
Q Consensus       121 ~~a~~~~~~  129 (153)
                      ++|..+|..
T Consensus      1212 eeA~~~Y~k 1220 (1630)
T 1xi4_A         1212 DAAKLLYNN 1220 (1630)
T ss_pred             HHHHHHHHh
Confidence            555555555

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.73  E-value=0.1  Score=35.77  Aligned_cols=26  Identities=8%  Similarity=-0.174  Sum_probs=21.8

Q ss_pred             hHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010          106 TFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus       106 ~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      .+..+...+...|++++|...|++..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            56677777778899999999999876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.73  E-value=0.14  Score=35.71  Aligned_cols=65  Identities=12%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER----GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLL  126 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  126 (153)
                      ...|..+-..|...|++++|.+.+++....    +-.|.                 ...++..+-..|...|++++|...
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~  109 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG-----------------EAKASGNLGNTLKVLGNFDEAIVC  109 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH-----------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence            356888889999999999999999987542    11121                 234788888899999999999999


Q ss_pred             HHHHHH
Q 047010          127 LFLMYE  132 (153)
Q Consensus       127 ~~~m~~  132 (153)
                      +++..+
T Consensus       110 ~~~al~  115 (406)
T 3sf4_A          110 CQRHLD  115 (406)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.72  E-value=0.21  Score=41.99  Aligned_cols=55  Identities=16%  Similarity=0.100  Sum_probs=32.8

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      ++...|..+=..|-..|++++|..+|...                           ..|..+...+++.|+++.|.+.++
T Consensus      1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------------------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A         1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------------------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------------------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44455555555566666666666666653                           256666666666666666666665


Q ss_pred             HH
Q 047010          129 LM  130 (153)
Q Consensus       129 ~m  130 (153)
                      +.
T Consensus      1246 KA 1247 (1630)
T 1xi4_A         1246 KA 1247 (1630)
T ss_pred             Hh
Confidence            44

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.69  E-value=0.14  Score=29.63  Aligned_cols=79  Identities=14%  Similarity=-0.019  Sum_probs=54.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010           56 AVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus        56 ~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v  135 (153)
                      .+-..+.+.|++++|.+.|++..+..  |+..              .....+..+-..+.+.|++++|...|+...+.. 
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-   69 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY--PNGV--------------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-   69 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SSST--------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCc--------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-
Confidence            34567788999999999999987743  1100              001366677888899999999999999987643 


Q ss_pred             CCC----HHHHHHHHHHhhcC
Q 047010          136 IPS----RTLYDTLIKKLDQQ  152 (153)
Q Consensus       136 ~p~----~~~~~~li~~~~~~  152 (153)
                       |+    ...+..+-..+.+.
T Consensus        70 -p~~~~~~~~~~~la~~~~~~   89 (129)
T 2xev_A           70 -PTHDKAAGGLLKLGLSQYGE   89 (129)
T ss_dssp             -TTSTTHHHHHHHHHHHHHHT
T ss_pred             -CCCcccHHHHHHHHHHHHHc
Confidence             33    34455554444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.65  E-value=0.23  Score=32.00  Aligned_cols=106  Identities=15%  Similarity=0.058  Sum_probs=73.8

Q ss_pred             ChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCC-ccHHHHHHHHHHHHh----cCC
Q 047010            7 DFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLK-PDVYTYTAVMDGFCK----VGR   66 (153)
Q Consensus         7 ~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~-~~~~t~~~ll~~~~~----~g~   66 (153)
                      ++++|...|....+.|.   ...+..|               .|...+++..+.|.. .+...+..|=..|..    .++
T Consensus        68 ~~~~A~~~~~~A~~~g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d  144 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAGS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED  144 (212)
T ss_dssp             CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred             CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence            89999999999988663   3333322               777888877776532 126777778778877    789


Q ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHc------cCcHHHHHHHHHHHHHCCC
Q 047010           67 SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCG------VGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus        67 ~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------~g~~~~a~~~~~~m~~~~v  135 (153)
                      .++|.+.|++..+.+-.+.                    .+..+-..|..      ..++++|...|+...+.|-
T Consensus       145 ~~~A~~~~~~A~~~~~~~~--------------------a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          145 DVKASEYFKGSSSLSRTGY--------------------AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHHHHHTSCTTH--------------------HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCCHH--------------------HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999887622222                    34444444443      2278999999988877764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=95.64  E-value=0.2  Score=36.57  Aligned_cols=107  Identities=7%  Similarity=-0.036  Sum_probs=77.4

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCCh----------------hhchHH-----------HHHHHHHHHHHcCCCccHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNV----------------TTYTIL-----------EAYEMLMNVKNDGLKPDVYTY   54 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~   54 (153)
                      |.+.|++++|...|....+..  |+.                ..|..+           .|+..+++..... +.+...|
T Consensus       278 ~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~  354 (457)
T 1kt0_A          278 YFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGL  354 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHH
Confidence            456799999999999988742  332                344333           7888888777653 3467889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH-HHHHH
Q 047010           55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL-LLFLM  130 (153)
Q Consensus        55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m  130 (153)
                      ..+-.+|.+.|++++|...|++..+.  .|+                 +...+..+-..+.+.++.+++.+ .+..|
T Consensus       355 ~~~g~a~~~~g~~~~A~~~~~~al~l--~P~-----------------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          355 YRRGEAQLLMNEFESAKGDFEKVLEV--NPQ-----------------NKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT--C---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh--CCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998764  343                 23477778888888888877664 34444

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.51  E-value=0.072  Score=30.68  Aligned_cols=57  Identities=12%  Similarity=0.321  Sum_probs=42.5

Q ss_pred             HHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010           91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK  148 (153)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~  148 (153)
                      .+..+......|+..+..+.+.+|.+.+++..|.++|+..+.+- .+...+|..+++-
T Consensus        32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE   88 (109)
T 1v54_E           32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE   88 (109)
T ss_dssp             HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred             HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence            34444555566677799999999999999999999999997642 2335567777653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=95.42  E-value=0.25  Score=30.89  Aligned_cols=80  Identities=11%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHcCCCCcHhhH----HHHHHHHHccCcHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHNVIDIGHIPRTITF----NNVIQALCGVGKID  121 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~  121 (153)
                      ...|+.+-.++.+.|++++|+..+++.++.     .+.|+.                 ...|    .-.-.++...|+++
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~-----------------~~A~~~~~~~rG~aL~~lgr~e  119 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE-----------------GKLWISAVYSRALALDGLGRGA  119 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH-----------------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch-----------------HHHHHHHHHhHHHHHHHCCCHH
Confidence            348999999999999999999999998763     124442                 2467    88888999999999


Q ss_pred             HHHHHHHHHH-----HCCCCCCHHHHHHHHH
Q 047010          122 KALLLLFLMY-----EHGKIPSRTLYDTLIK  147 (153)
Q Consensus       122 ~a~~~~~~m~-----~~~v~p~~~~~~~li~  147 (153)
                      +|+..|++..     +.++.+......-.+.
T Consensus       120 EAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A          120 EAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             HHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            9999999875     3467776655544443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=95.38  E-value=0.3  Score=31.60  Aligned_cols=104  Identities=10%  Similarity=-0.009  Sum_probs=67.7

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCh-hhchHHHHHH-HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010            5 KNDFFEARKVIDYMFDNGYHPNV-TTYTILEAYE-MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV   82 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~a~~-~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~   82 (153)
                      .|++++|...|+...+..  |+. ..+.....+. +...+.        ...-.+-..|.+.|++++|...|++..+.- 
T Consensus       109 ~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-  177 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-  177 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred             cHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-
Confidence            467788888888877652  332 2222221111 111111        122345667889999999999999988753 


Q ss_pred             CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010           83 TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                       |+..              .....+..+..++.+.|++++|...++.+...+
T Consensus       178 -p~~~--------------~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          178 -PDTQ--------------ATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -TTSH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -cCCC--------------ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence             2211              012468889999999999999999999987754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=95.27  E-value=0.53  Score=33.76  Aligned_cols=98  Identities=11%  Similarity=0.068  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHHH----------------------
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNV-VTLI----------------------   90 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~~~~----------------------   90 (153)
                      .+.+.+++..... +.+...+..+-..|.+.|++++|.+.+++..+..  |+. .++.                      
T Consensus       231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~  307 (472)
T 4g1t_A          231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMY  307 (472)
T ss_dssp             HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3444444444332 3456778888899999999999999999887653  222 1110                      


Q ss_pred             --------------HHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010           91 --------------HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus        91 --------------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v  135 (153)
                                    .+..... ....+..++..+-..|...|++++|...|++..+...
T Consensus       308 ~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          308 GKRKLLELIGHAVAHLKKADE-ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH-HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHhhHHHHHHHHHHHhh-cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence                          0001111 1123445788888999999999999999999877543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.17  E-value=0.57  Score=33.55  Aligned_cols=72  Identities=22%  Similarity=0.153  Sum_probs=56.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH---
Q 047010           55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY---  131 (153)
Q Consensus        55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---  131 (153)
                      ..++..+...|+.+++...+..+....  |                 .+...|..+|.++.+.|+..+|++.|+.+.   
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~--P-----------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L  235 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH--P-----------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  235 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS--T-----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC--C-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            446677778888888888888776542  1                 245599999999999999999999998874   


Q ss_pred             --HCCCCCCHHHHHHH
Q 047010          132 --EHGKIPSRTLYDTL  145 (153)
Q Consensus       132 --~~~v~p~~~~~~~l  145 (153)
                        +.|+.|+..+-...
T Consensus       236 ~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          236 ADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHSCCCCHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHH
Confidence              45999988775543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=95.05  E-value=0.43  Score=31.47  Aligned_cols=83  Identities=12%  Similarity=-0.003  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHH
Q 047010           34 EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNV  110 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (153)
                      +|...|+++.......  ....+..+-.+|.+.|++++|.+.|++..+..- .|..                 ...+..+
T Consensus        33 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----------------~~a~~~l   95 (261)
T 3qky_A           33 RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV-----------------PQAEYER   95 (261)
T ss_dssp             HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-----------------HHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh-----------------HHHHHHH
Confidence            8888898888764221  156788888899999999999999999887531 1211                 2355566


Q ss_pred             HHHHHc--------cCcHHHHHHHHHHHHHC
Q 047010          111 IQALCG--------VGKIDKALLLLFLMYEH  133 (153)
Q Consensus       111 i~~~~~--------~g~~~~a~~~~~~m~~~  133 (153)
                      -.++..        .|++++|...|++..+.
T Consensus        96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            666767        99999999999998764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=94.98  E-value=0.31  Score=29.60  Aligned_cols=93  Identities=10%  Similarity=0.001  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-------GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKA  123 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  123 (153)
                      ...+...=..+.+.|++++|.+.|.+..+.       .-+.+.. +..       ....+...|..+-.+|.+.|++++|
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~nla~~~~~~~~~~~A   82 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE-WVE-------LDRKNIPLYANMSQCYLNIGDLHEA   82 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH-HHH-------HHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH-HHH-------HHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            345666777889999999999999988764       1111110 000       0012335788899999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010          124 LLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       124 ~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ...++...+.. ..+...|..+-.++...
T Consensus        83 ~~~~~~al~~~-p~~~~a~~~~g~~~~~~  110 (162)
T 3rkv_A           83 EETSSEVLKRE-ETNEKALFRRAKARIAA  110 (162)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcC-CcchHHHHHHHHHHHHH
Confidence            99999987754 23455666555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.80  E-value=0.24  Score=27.26  Aligned_cols=58  Identities=17%  Similarity=0.165  Sum_probs=47.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh-hHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010           58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI-TFNNVIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus        58 l~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      -..+.+.|++++|.+.|++..+..  |+                 +.. .|..+-..|...|++++|...|++..+..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE--PV-----------------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC--SS-----------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC--CC-----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            456788999999999999987753  22                 335 77888888999999999999999987654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=94.75  E-value=0.12  Score=31.38  Aligned_cols=58  Identities=12%  Similarity=0.303  Sum_probs=47.0

Q ss_pred             HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010           90 IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK  148 (153)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~  148 (153)
                      ..+..+......|+..+..+.+.+|.+.+|+..|.++|+-.+.+- .+....|..+++-
T Consensus        74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE  131 (152)
T 2y69_E           74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE  131 (152)
T ss_dssp             HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence            556667778888999999999999999999999999999997642 3446667777653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.69  E-value=0.12  Score=28.99  Aligned_cols=46  Identities=15%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      +|...+++..+.. +.+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus        25 ~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A           25 RALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             HHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4444444444332 125568889999999999999999999987653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.68  E-value=0.86  Score=33.20  Aligned_cols=133  Identities=11%  Similarity=-0.006  Sum_probs=83.3

Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhchHH---------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cC
Q 047010            5 KNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VG   65 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~g   65 (153)
                      .+++++|...|....+.|.   ...+..|               .|...+++..+.|   +...+..+=..|..    .+
T Consensus        56 ~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~  129 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV  129 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence            5788889999888887652   2233222               6777777776654   55666667777777    77


Q ss_pred             CHHHHHHHHHHHHHcCCCchHHHH------------------HHHHHHHHcCCCCcHhhHHHHHHHHHc----cCcHHHH
Q 047010           66 RSNEVMELLNEAIERGVTPNVVTL------------------IHLHNVIDIGHIPRTITFNNVIQALCG----VGKIDKA  123 (153)
Q Consensus        66 ~~~~a~~l~~~m~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a  123 (153)
                      ++++|.+.|++..+.|.+.-...+                  ..+....+.   -+...+..+-..|..    .+++++|
T Consensus       130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A  206 (490)
T 2xm6_A          130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ---GNVWSCNQLGYMYSRGLGVERNDAIS  206 (490)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence            899999999988776531111110                  122222222   245566666666666    7888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047010          124 LLLLFLMYEHGKIPSRTLYDTLIKKL  149 (153)
Q Consensus       124 ~~~~~~m~~~~v~p~~~~~~~li~~~  149 (153)
                      ...|++..+.|   +...+..+-..|
T Consensus       207 ~~~~~~a~~~~---~~~a~~~lg~~y  229 (490)
T 2xm6_A          207 AQWYRKSATSG---DELGQLHLADMY  229 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHH
Confidence            88888887765   344554444444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.62  E-value=0.72  Score=32.03  Aligned_cols=113  Identities=12%  Similarity=0.060  Sum_probs=71.8

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChh----hchHH-----------HHHHHHHHHHHc----CCCc-cHHHHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVT----TYTIL-----------EAYEMLMNVKND----GLKP-DVYTYTAVMDGFC   62 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l-----------~a~~~~~~m~~~----g~~~-~~~t~~~ll~~~~   62 (153)
                      ...|++++|...++...+..-..+..    .+..+           .+.+.+.+....    +... ...++..+-..+.
T Consensus        25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  104 (373)
T 1hz4_A           25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF  104 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            34688999999999877753112221    11111           555555544321    1111 1234566777788


Q ss_pred             hcCCHHHHHHHHHHHHHc----CCC--chHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           63 KVGRSNEVMELLNEAIER----GVT--PNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        63 ~~g~~~~a~~l~~~m~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      ..|++++|.+.+++..+.    +.+  |.                 ....+..+-..+...|++++|...+++..+
T Consensus       105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  163 (373)
T 1hz4_A          105 AQGFLQTAWETQEKAFQLINEQHLEQLPM-----------------HEFLVRIRAQLLWAWARLDEAEASARSGIE  163 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCTTSTH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccCcH-----------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            899999999999887652    111  21                 123667777888999999999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=94.39  E-value=0.52  Score=29.41  Aligned_cols=81  Identities=15%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             cHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc--
Q 047010           50 DVYTYTAVMDGFCKVGR----------SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV--  117 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~----------~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--  117 (153)
                      +...|..+=.++.+.++          +++|...|++..+..  |+                 +..+|..+-.+|...  
T Consensus        35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~-----------------~~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PK-----------------KDEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cC-----------------cHHHHHHHHHHHHHhcc
Confidence            55555555555555554          568888888877642  32                 234777888888766  


Q ss_pred             ---------CcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          118 ---------GKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       118 ---------g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                               |++++|...|++..+.  .|+...|...++...+
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence                     4899999999998874  5888888877766543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=94.37  E-value=0.77  Score=31.28  Aligned_cols=28  Identities=18%  Similarity=0.011  Sum_probs=24.9

Q ss_pred             hhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010          105 ITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      .+++.+-..|.+.|++++|...|++..+
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5788889999999999999999998864

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=94.33  E-value=0.21  Score=27.82  Aligned_cols=32  Identities=9%  Similarity=0.264  Sum_probs=28.2

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      .+...|..+-.+|.+.|++++|.+.+++..+.
T Consensus        36 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A           36 QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            36778888999999999999999999998764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=94.29  E-value=0.34  Score=28.67  Aligned_cols=67  Identities=7%  Similarity=0.065  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ..+..+-..|...|++++|.+.+++..+..- .++..              ....++..+-..+...|++++|...+++.
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH--------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5788888999999999999999998765210 01100              11346778888899999999999999887


Q ss_pred             HH
Q 047010          131 YE  132 (153)
Q Consensus       131 ~~  132 (153)
                      .+
T Consensus       116 ~~  117 (164)
T 3ro3_A          116 LA  117 (164)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.25  E-value=0.49  Score=33.50  Aligned_cols=118  Identities=7%  Similarity=-0.095  Sum_probs=76.5

Q ss_pred             ccccCChHHHHHHHHHHHHCC-CCCChh----hchHH-----------HHHHHHHHHH----HcCCCcc-HHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNG-YHPNVT----TYTIL-----------EAYEMLMNVK----NDGLKPD-VYTYTAVMDG   60 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~-~~~~~~----~~~~l-----------~a~~~~~~m~----~~g~~~~-~~t~~~ll~~   60 (153)
                      |...|++++|...+..+.+.- -.++..    +.+.+           .+..++.+..    ..+..+. ..++..+...
T Consensus        65 y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  144 (434)
T 4b4t_Q           65 YVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATL  144 (434)
T ss_dssp             HHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            456789999999988876631 111111    11111           4444444332    2333333 4678889999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           61 FCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        61 ~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      |...|++++|.+++++....-...+..             .....+|..++..|...|++++|..+++....
T Consensus       145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          145 HYQKKQYKDSLALINDLLREFKKLDDK-------------PSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSSCS-------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHccChHHHHHHHHHHHHHHHhcccc-------------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            999999999999999876532111100             01235789999999999999999999987753

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=94.18  E-value=0.6  Score=29.37  Aligned_cols=95  Identities=14%  Similarity=-0.041  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      ...+..+-..+.+.|++++|.+.|++..+..- .|+.... .+   ...........|..+-.+|.+.|++++|...++.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-IL---LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HH---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hH---HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34566777788999999999999999877421 1110000 00   0000000125788888899999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHhh
Q 047010          130 MYEHGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       130 m~~~~v~p~~~~~~~li~~~~  150 (153)
                      ..+.. ..+...+..+-.++.
T Consensus       114 al~~~-p~~~~~~~~lg~~~~  133 (198)
T 2fbn_A          114 VLKID-KNNVKALYKLGVANM  133 (198)
T ss_dssp             HHHHS-TTCHHHHHHHHHHHH
T ss_pred             HHHhC-cccHHHHHHHHHHHH
Confidence            87653 234555555544443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.16  E-value=1.2  Score=34.47  Aligned_cols=129  Identities=14%  Similarity=0.096  Sum_probs=78.1

Q ss_pred             cCChHHHH-HHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCC---------Cc------------cH
Q 047010            5 KNDFFEAR-KVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGL---------KP------------DV   51 (153)
Q Consensus         5 ~~~~~~a~-~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~---------~~------------~~   51 (153)
                      .|+.++|. .+++..... ++.+...|-..           .|.+++++......         .|            ..
T Consensus       356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~  434 (679)
T 4e6h_A          356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT  434 (679)
T ss_dssp             HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence            45666775 888887753 33344333222           66666666654310         13            23


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCchHHHH------------HHHHHHHHcC---CCCcHhhHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIER-G-VTPNVVTL------------IHLHNVIDIG---HIPRTITFNNVIQAL  114 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-~-~~~~~~~~------------~~~~~~~~~~---~~~~~~~~~~li~~~  114 (153)
                      ..|-..+....+.|..+.|.++|.+..+. + ..+...+.            ...+.+++.+   ..-+...|...+.-.
T Consensus       435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe  514 (679)
T 4e6h_A          435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            46888888888889999999999998776 3 22222211            1111111111   122445677777777


Q ss_pred             HccCcHHHHHHHHHHHHHCC
Q 047010          115 CGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus       115 ~~~g~~~~a~~~~~~m~~~~  134 (153)
                      ...|+.+.|..+|++.....
T Consensus       515 ~~~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          515 IYVNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             HHHTCHHHHHHHHHHHTTTS
T ss_pred             HhCCCHHHHHHHHHHHHHhc
Confidence            78899999999999887654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=93.84  E-value=1.1  Score=31.82  Aligned_cols=96  Identities=5%  Similarity=-0.116  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ..|..+-..+.+.|++++|.+.|++..+.-  ++..  .....-...... .+...|..+-.+|.+.|++++|...+++.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR--AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH--HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc--cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            457778888999999999999999887620  0000  000000000001 13458888999999999999999999998


Q ss_pred             HHCCCCCCHHHHHHHHHHhhcC
Q 047010          131 YEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       131 ~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      .+.. .-+...|..+-.++.+.
T Consensus       300 l~~~-p~~~~a~~~lg~~~~~~  320 (370)
T 1ihg_A          300 LEID-PSNTKALYRRAQGWQGL  320 (370)
T ss_dssp             HTTC-TTCHHHHHHHHHHHHHT
T ss_pred             HHhC-chhHHHHHHHHHHHHHc
Confidence            8754 22455666555555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.84  E-value=0.37  Score=25.70  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      +|...+++..... +.+...|..+-..+.+.|++++|.+.|++..+.
T Consensus        27 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           27 EAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4445555444432 235678888999999999999999999998775

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=93.71  E-value=0.26  Score=27.08  Aligned_cols=32  Identities=19%  Similarity=0.256  Sum_probs=27.6

Q ss_pred             cHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010           50 DVY-TYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus        50 ~~~-t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      +.. .|..+-.+|.+.|++++|.+.|++..+..
T Consensus        33 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A           33 GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            456 78888889999999999999999988753

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.58  E-value=1.4  Score=31.50  Aligned_cols=76  Identities=11%  Similarity=0.042  Sum_probs=59.5

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010           48 KPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLL  127 (153)
Q Consensus        48 ~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  127 (153)
                      +.+...|.++--.+...|++++|...+++....+  |+.                  ..|..+-..+.-.|++++|.+.+
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~------------------~a~~llG~~~~~~G~~~eA~e~~  333 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSW------------------LNYVLLGKVYEMKGMNREAADAY  333 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCH------------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCH------------------HHHHHHHHHHHHCCCHHHHHHHH
Confidence            5577888888777777899999999999998875  443                  36767777788899999999999


Q ss_pred             HHHHHCCCCCCHHHHHHH
Q 047010          128 FLMYEHGKIPSRTLYDTL  145 (153)
Q Consensus       128 ~~m~~~~v~p~~~~~~~l  145 (153)
                      .+....  .|...||...
T Consensus       334 ~~AlrL--~P~~~t~~~~  349 (372)
T 3ly7_A          334 LTAFNL--RPGANTLYWI  349 (372)
T ss_dssp             HHHHHH--SCSHHHHHHH
T ss_pred             HHHHhc--CCCcChHHHH
Confidence            988765  4666666543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=93.01  E-value=0.69  Score=33.97  Aligned_cols=73  Identities=16%  Similarity=0.052  Sum_probs=55.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010           59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS  138 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~  138 (153)
                      ..+.+.|++++|.+.|++..+.  .|+                 +..+|..+-.+|.+.|++++|...+++..+.. .-+
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~--~p~-----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~   73 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIEL--NPS-----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKY   73 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHHh--CCc-----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence            4567889999999999998775  232                 34589999999999999999999999998754 224


Q ss_pred             HHHHHHHHHHhhc
Q 047010          139 RTLYDTLIKKLDQ  151 (153)
Q Consensus       139 ~~~~~~li~~~~~  151 (153)
                      ...+..+-.++.+
T Consensus        74 ~~~~~~lg~~~~~   86 (477)
T 1wao_1           74 IKGYYRRAASNMA   86 (477)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.62  E-value=0.86  Score=32.62  Aligned_cols=66  Identities=8%  Similarity=0.083  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHcCC
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-----RGVTPNVVTLIHLHNVIDIGH  100 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~~~~~~~~~~~~~~  100 (153)
                      .+...+..+... -+.+...|..+|.++.+.|+..+|++.|+...+     .|+.|+..+-.+...+.....
T Consensus       189 ~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~~~  259 (388)
T 2ff4_A          189 AVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQP  259 (388)
T ss_dssp             HHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCC
Confidence            444455555433 245888999999999999999999999998755     499999998888888776543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=92.56  E-value=2.2  Score=31.02  Aligned_cols=95  Identities=14%  Similarity=0.083  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCchHHHH-----------------HH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-----GRSNEVMELLNEAIERGVTPNVVTL-----------------IH   91 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~   91 (153)
                      +|...+++..+.|   +...+..+-..|...     ++.++|.+.|++..+.|.+.-...+                 ..
T Consensus       277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~  353 (490)
T 2xm6_A          277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEW  353 (490)
T ss_dssp             HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence            4555555554443   344555555556555     6777777777776665421110000                 11


Q ss_pred             HHHHHHcCCCCcHhhHHHHHHHHHc----cCcHHHHHHHHHHHHHCC
Q 047010           92 LHNVIDIGHIPRTITFNNVIQALCG----VGKIDKALLLLFLMYEHG  134 (153)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~  134 (153)
                      +....+.   .+...+..+-..|..    .+++++|...|++..+.|
T Consensus       354 ~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          354 FRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            1111121   234555666666665    677777777777776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=92.53  E-value=0.8  Score=25.87  Aligned_cols=69  Identities=10%  Similarity=0.060  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047010           10 EARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAI   78 (153)
Q Consensus        10 ~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~   78 (153)
                      .|...|....+.. +.+...+..+           .|...+++..... +.+...|..+-.+|.+.|++++|...|++..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566677766643 2234444433           7788888777653 2356789999999999999999999999886


Q ss_pred             Hc
Q 047010           79 ER   80 (153)
Q Consensus        79 ~~   80 (153)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=92.49  E-value=2.2  Score=30.90  Aligned_cols=128  Identities=11%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-----CH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG-----RS   67 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g-----~~   67 (153)
                      +.|++++|..+|....+.|..+.......+           +|...|++..+.    +...+..+-..+...|     +.
T Consensus        15 ~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~   90 (452)
T 3e4b_A           15 KRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEH   90 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred             hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCH
Confidence            467888999999988877632222111111           444555444432    4444555555344443     77


Q ss_pred             HHHHHHHHHHHHcCCCchHHHH-----------------HHHHH--------------------------------HHHc
Q 047010           68 NEVMELLNEAIERGVTPNVVTL-----------------IHLHN--------------------------------VIDI   98 (153)
Q Consensus        68 ~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~--------------------------------~~~~   98 (153)
                      ++|.+.|++-.+.|.+.-...+                 ..+..                                ....
T Consensus        91 ~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~  170 (452)
T 3e4b_A           91 HEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA  170 (452)
T ss_dssp             HHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence            8888888887776543322111                 11111                                1111


Q ss_pred             CCCCcHhhHHHHHHHHHccC---cHHHHHHHHHHHHHCCC
Q 047010           99 GHIPRTITFNNVIQALCGVG---KIDKALLLLFLMYEHGK  135 (153)
Q Consensus        99 ~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~v  135 (153)
                      -...+...+..+-..|...|   ++++|...|+...+.|-
T Consensus       171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~  210 (452)
T 3e4b_A          171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT  210 (452)
T ss_dssp             HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence            11233346777777787888   89999999998888773

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=92.27  E-value=0.32  Score=35.48  Aligned_cols=31  Identities=13%  Similarity=0.089  Sum_probs=27.0

Q ss_pred             ccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010           49 PDV-YTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus        49 ~~~-~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      |+. .+|+.|-..|...|++++|+.++++..+
T Consensus       379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            444 7799999999999999999999998654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=92.25  E-value=1.2  Score=30.90  Aligned_cols=99  Identities=11%  Similarity=-0.008  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      ...|..+-..+.+.|++++|...|++..+.  .|+...+.......+.........|..+-.+|.+.|++++|...+++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345677778889999999999999997664  344332100000000000001137888889999999999999999998


Q ss_pred             HHCCCCCCHHHHHHHHHHhhcC
Q 047010          131 YEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       131 ~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      .+.. .-+...|..+-.++...
T Consensus       257 l~~~-p~~~~a~~~lg~a~~~~  277 (338)
T 2if4_A          257 LTEE-EKNPKALFRRGKAKAEL  277 (338)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHhC-CCCHHHHHHHHHHHHHc
Confidence            7653 23566666666666544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=91.97  E-value=0.71  Score=33.56  Aligned_cols=62  Identities=10%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           56 AVMDGFCKVGRSNEVMELLNEAIERG---VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        56 ~ll~~~~~~g~~~~a~~l~~~m~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ..+..+.+.|++++|++++++..+..   +.|+..              .-..+++.+...|...|++++|..++++..
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~--------------~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINI--------------YQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH--------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccch--------------HHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34566778899999999999887632   222211              123589999999999999999999999775

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.71  E-value=2.5  Score=29.80  Aligned_cols=119  Identities=9%  Similarity=0.049  Sum_probs=67.8

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhc-hHH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTY-TIL--EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l--~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      .+.|++++|...|....+..-..+.... ...  .....           ....+..+...|.+.|++++|.+++.....
T Consensus        15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q           15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNE-----------QETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4568899999999988875321111100 000  00000           112356677778888888888888777644


Q ss_pred             c-CCCchHHHH---------------------HHHHH----HHHcCCCCc-HhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           80 R-GVTPNVVTL---------------------IHLHN----VIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        80 ~-~~~~~~~~~---------------------~~~~~----~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      . +..++..+.                     .....    ....+..+. ..++..+...|...|++++|..+++....
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            2 112222211                     11111    112222222 35788889999999999999999988753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=91.64  E-value=1.3  Score=30.37  Aligned_cols=86  Identities=13%  Similarity=-0.026  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|.++|..+...+  |+....-.+-..+.+.+++++|+..|+...+   .|+..              .....+..+=.+
T Consensus       120 eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~--------------~~~~a~~~LG~a  180 (282)
T 4f3v_A          120 DAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKF--------------LAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHH--------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcc--------------cHHHHHHHHHHH
Confidence            5556665555433  5443555555688899999999999974432   22211              012256677788


Q ss_pred             HHccCcHHHHHHHHHHHHHCCCCCC
Q 047010          114 LCGVGKIDKALLLLFLMYEHGKIPS  138 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~v~p~  138 (153)
                      +.+.|++++|+..|++.......|.
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~  205 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEA  205 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCcc
Confidence            9999999999999999875444365

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=90.91  E-value=1.8  Score=26.74  Aligned_cols=85  Identities=15%  Similarity=0.113  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 047010           35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG---RSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVI  111 (153)
Q Consensus        35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g---~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  111 (153)
                      +.+.+.+-.+.|. ++..+.-.+-.++++.+   +++++..+|++..+.. .|+..               ....|+.-+
T Consensus        17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~---------------rd~lY~LAv   79 (152)
T 1pc2_A           17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQ---------------RDYVFYLAV   79 (152)
T ss_dssp             HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHH---------------HHHHHHHHH
T ss_pred             HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Cccch---------------HHHHHHHHH
Confidence            3344444444444 67777777777888888   7779999999988865 34211               123455444


Q ss_pred             HHHHccCcHHHHHHHHHHHHHCCCCCCH
Q 047010          112 QALCGVGKIDKALLLLFLMYEHGKIPSR  139 (153)
Q Consensus       112 ~~~~~~g~~~~a~~~~~~m~~~~v~p~~  139 (153)
                       +|.+.|++++|.+.++.+.+.  .|+.
T Consensus        80 -~~~kl~~Y~~A~~y~~~lL~i--eP~n  104 (152)
T 1pc2_A           80 -GNYRLKEYEKALKYVRGLLQT--EPQN  104 (152)
T ss_dssp             -HHHHTSCHHHHHHHHHHHHHH--CTTC
T ss_pred             -HHHHccCHHHHHHHHHHHHhc--CCCC
Confidence             447999999999999999774  4643

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.04  E-value=1.7  Score=25.03  Aligned_cols=47  Identities=9%  Similarity=0.123  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010           35 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus        35 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      ..+-++++......|+.....+.+.+|.|.+++..|.++|+-.+...
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~   75 (109)
T 1v54_E           29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   75 (109)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            34555677777889999999999999999999999999999886643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.92  E-value=1.5  Score=24.32  Aligned_cols=67  Identities=13%  Similarity=0.149  Sum_probs=48.9

Q ss_pred             ccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGR---SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL  125 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~---~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  125 (153)
                      .|...+..+-.++...++   .++|..++++..+..  |+                 +.....-+-..+.+.|++++|..
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~-----------------~~rA~~~lg~~~~~~g~y~~Ai~   64 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PY-----------------NEAALSLIANDHFISFRFQEAID   64 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cC-----------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence            455566666666654443   699999999987753  32                 33466677778889999999999


Q ss_pred             HHHHHHHCC
Q 047010          126 LLFLMYEHG  134 (153)
Q Consensus       126 ~~~~m~~~~  134 (153)
                      .++.+.+..
T Consensus        65 ~w~~~l~~~   73 (93)
T 3bee_A           65 TWVLLLDSN   73 (93)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHhhC
Confidence            999998753

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=89.74  E-value=2.3  Score=26.14  Aligned_cols=113  Identities=16%  Similarity=0.126  Sum_probs=69.0

Q ss_pred             cCChHHHHHHHHHHHHCC-C-CCChhhchHH---HHHHHHHHHHHcCC--------------------CccHHHHHHHHH
Q 047010            5 KNDFFEARKVIDYMFDNG-Y-HPNVTTYTIL---EAYEMLMNVKNDGL--------------------KPDVYTYTAVMD   59 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~l---~a~~~~~~m~~~g~--------------------~~~~~t~~~ll~   59 (153)
                      .|++++..++.....++. + +.|=+..|.+   ....++.-+..-|-                    ..++.-.+..++
T Consensus        20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ALd   99 (172)
T 1wy6_A           20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKALD   99 (172)
T ss_dssp             TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHHH
Confidence            578888888888887752 1 1111222333   22233333333222                    133444555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010           60 GFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI  136 (153)
Q Consensus        60 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~  136 (153)
                      .....|.-|+-.++...+...                   .+|+....-.+-.+|.+.|+..+|.+++++.-+.|++
T Consensus       100 ~lv~~~KkDqLdki~~~~l~n-------------------~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILKN-------------------NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC---------------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhccHhHHHHHHHHHhcc-------------------CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            666666666666666664331                   2233447778899999999999999999999888863

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=89.18  E-value=2.7  Score=26.01  Aligned_cols=73  Identities=10%  Similarity=0.129  Sum_probs=49.8

Q ss_pred             ChHHHHHHHHHHHHCCCCCChhhchH----H---------HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHHHHH
Q 047010            7 DFFEARKVIDYMFDNGYHPNVTTYTI----L---------EAYEMLMNVKNDGLKP--DVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         7 ~~~~a~~~~~~m~~~~~~~~~~~~~~----l---------~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ....+++-|....+.+.......|+.    +         ++..+++++.+.. .|  +...+-.+--+|.+.|++++|.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            45567777777776654322233321    1         7889999888875 23  2344455666779999999999


Q ss_pred             HHHHHHHHc
Q 047010           72 ELLNEAIER   80 (153)
Q Consensus        72 ~l~~~m~~~   80 (153)
                      +.++...+.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999875

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=88.56  E-value=2.1  Score=24.03  Aligned_cols=76  Identities=17%  Similarity=0.121  Sum_probs=54.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +....-.|=..+.+.|+++.|...|+...+.--+++            ..-.+...++..+-.++.+.|+++.|..++++
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~------------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~   71 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE------------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK   71 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC------------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC------------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            344455666778899999999999998766310000            00112345889999999999999999999999


Q ss_pred             HHHCCCCCCH
Q 047010          130 MYEHGKIPSR  139 (153)
Q Consensus       130 m~~~~v~p~~  139 (153)
                      ..+.  .|+.
T Consensus        72 al~l--~P~~   79 (104)
T 2v5f_A           72 LLEL--DPEH   79 (104)
T ss_dssp             HHHH--CTTC
T ss_pred             HHhc--CCCC
Confidence            8764  4544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.09  E-value=3.9  Score=31.54  Aligned_cols=77  Identities=19%  Similarity=0.093  Sum_probs=47.0

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CchHHHH-HHHHHHHHcCCCCcHhhHHHHHHHHHccCcH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV-------TPNVVTL-IHLHNVIDIGHIPRTITFNNVIQALCGVGKI  120 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  120 (153)
                      .+...|..+-..+.+.|+++.|++.|..+.....       .-+..-. .+.......|      -++....+|.+.|++
T Consensus       679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~  752 (814)
T 3mkq_A          679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDI  752 (814)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCH
T ss_pred             CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCH
Confidence            4678999999999999999999999998743110       0011111 1111111111      234555566677777


Q ss_pred             HHHHHHHHHHH
Q 047010          121 DKALLLLFLMY  131 (153)
Q Consensus       121 ~~a~~~~~~m~  131 (153)
                      ++|.+++.++.
T Consensus       753 ~~a~~~~~~~~  763 (814)
T 3mkq_A          753 QGAKDLLIKSQ  763 (814)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            77777776653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=85.91  E-value=4.5  Score=25.11  Aligned_cols=74  Identities=9%  Similarity=0.093  Sum_probs=50.2

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHH---------------------HHHHHHHHHHHcCCCc-cHHHHHHHHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTIL---------------------EAYEMLMNVKNDGLKP-DVYTYTAVMDGF   61 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---------------------~a~~~~~~m~~~g~~~-~~~t~~~ll~~~   61 (153)
                      |.+.+++|...++...+.. +-+...|..+                     +|...|++..+.  .| +...|..+=.+|
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence            3456788888888888764 3344444433                     344444444443  34 567888888888


Q ss_pred             HhcC-----------CHHHHHHHHHHHHHc
Q 047010           62 CKVG-----------RSNEVMELLNEAIER   80 (153)
Q Consensus        62 ~~~g-----------~~~~a~~l~~~m~~~   80 (153)
                      ...|           ++++|.+.|++..+.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            8764           899999999998775

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=85.42  E-value=9.2  Score=28.20  Aligned_cols=29  Identities=14%  Similarity=0.083  Sum_probs=23.3

Q ss_pred             cHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010          103 RTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ....|...+.--...|+.+.+..+++++.
T Consensus       383 ~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          383 TSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34578888887778899999999888775

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.73  E-value=4.8  Score=33.08  Aligned_cols=131  Identities=11%  Similarity=0.131  Sum_probs=71.8

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLK--PDVYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~--~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      |...|++++|...|.... .|+..+......+..   +..+......  .-..=|.-++..+-+.+.++.+.++-+.-.+
T Consensus       852 ~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~  927 (1139)
T 4fhn_B          852 YLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLRE---FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA  927 (1139)
T ss_dssp             HHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHH---HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcc---cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345678888888886632 234333332222211   1112211111  1122356677777788888877777665544


Q ss_pred             cCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010           80 RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      ...+-+..              .....|..+..++...|++++|...+..+.....+  ......||..+|++
T Consensus       928 ~~~~~~~~--------------~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~  984 (1139)
T 4fhn_B          928 SKETDDED--------------LSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQ  984 (1139)
T ss_dssp             HCCSCCHH--------------HHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHH
T ss_pred             hccCCChh--------------hHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhC
Confidence            32211111              01235777888888888888888888777654432  45566666655543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=84.05  E-value=5.3  Score=24.35  Aligned_cols=48  Identities=10%  Similarity=0.145  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      +..+-++++......|+.....+.+.+|.|.+++..|.++|+-.+...
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~  118 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA  118 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            444555666777889999999999999999999999999999886643

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=82.43  E-value=3.7  Score=24.81  Aligned_cols=52  Identities=12%  Similarity=0.100  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVV   87 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~   87 (153)
                      .+..++.++.+.+......-+--+--|+.+.|++++|.+..+.+.+.  .|+..
T Consensus        61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~  112 (134)
T 3o48_A           61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence            78889999888763333455666777899999999999999998764  55544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=81.63  E-value=11  Score=26.14  Aligned_cols=92  Identities=13%  Similarity=-0.006  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHcCCCcc---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHh
Q 047010           34 EAYEMLMNVKNDGLKPD---VYTYTAVMDGFCK-----VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTI  105 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~---~~t~~~ll~~~~~-----~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (153)
                      .+..++++..+.  .|+   -..|..+-..|.+     .|+.++|.+.|++-++-+-  +                -+..
T Consensus       181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~----------------~~id  240 (301)
T 3u64_A          181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--A----------------HDPD  240 (301)
T ss_dssp             HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--T----------------TCSH
T ss_pred             HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--C----------------CCch
Confidence            445555555544  344   4679999999999     5999999999999887532  1                0133


Q ss_pred             hHHHHHHHHHcc-CcHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 047010          106 TFNNVIQALCGV-GKIDKALLLLFLMYEHGKI--PSRTLYDTL  145 (153)
Q Consensus       106 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~~v~--p~~~~~~~l  145 (153)
                      ++...-..+++. |+.+++.+.+++.......  |+....+.+
T Consensus       241 ~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          241 HHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            666778888885 9999999999999887665  765555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=81.44  E-value=6.5  Score=23.45  Aligned_cols=47  Identities=9%  Similarity=0.116  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      .+..++.++...+.+.+. .-.-.+--++.+.|++++|.+.++.+.+.
T Consensus        56 ~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           56 KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            688999998887421123 33344556799999999999999999875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.60  E-value=19  Score=28.37  Aligned_cols=55  Identities=15%  Similarity=0.107  Sum_probs=45.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           58 MDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        58 l~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      .+-+...|+++.|+++-++-+..  .|+                 +-.+|-.|..+|.+.|+++.|+-+++-|.
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~--aPs-----------------eF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTEL--ALD-----------------SFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CSS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhc--Cch-----------------hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            44466789999999999987664  343                 34599999999999999999999999883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.24
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.17
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.04
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.04
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.03
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.99
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.96
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.75
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.69
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.59
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.44
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.39
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.3
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.11
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.04
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.99
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.97
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.92
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.59
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.4
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.25
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.1
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.94
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.83
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.77
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.51
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	95.47
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.46
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.31
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.53
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	93.85
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	93.04
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	92.72
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	92.38
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	92.2
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	91.65
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	90.72
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	90.68
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	90.55
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.57
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.37
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	87.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	84.53
d1mzba_	134	Ferric uptake regulation protein, FUR {Pseudomonas	83.79
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	83.26
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	83.0
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	81.43
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	81.32
d1khda1	69	Anthranilate phosphoribosyltransferase (TrpD) {Pec	81.1

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5.8e-05  Score=50.89  Aligned_cols=146  Identities=14%  Similarity=0.077  Sum_probs=90.6

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ...|++++|...+....+.+. .+...+..+           +|...+++..+.. +-+...|..+-..+.+.|++++|.
T Consensus       214 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~  291 (388)
T d1w3ba_         214 KEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE  291 (388)
T ss_dssp             HTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence            456777778777777766532 222333222           6677777665542 234566777777777778888887


Q ss_pred             HHHHHHHHcCCCchHHHH-------------HHHHHHHH--cCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010           72 ELLNEAIERGVTPNVVTL-------------IHLHNVID--IGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus        72 ~l~~~m~~~~~~~~~~~~-------------~~~~~~~~--~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v  135 (153)
                      +.++...... +.+...+             .-.....+  -...| +..+|..+-..|.+.|++++|...|++..+.  
T Consensus       292 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--  368 (388)
T d1w3ba_         292 DCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--  368 (388)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--
T ss_pred             HHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            7777765543 2222222             11111111  12334 4567888999999999999999999988764  


Q ss_pred             CCC-HHHHHHHHHHhhcCC
Q 047010          136 IPS-RTLYDTLIKKLDQQP  153 (153)
Q Consensus       136 ~p~-~~~~~~li~~~~~~g  153 (153)
                      .|+ ...|..+-..+.+.|
T Consensus       369 ~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         369 SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHcC
Confidence            464 667777777776544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=0.00025  Score=47.14  Aligned_cols=145  Identities=12%  Similarity=0.056  Sum_probs=92.0

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +.+.|++++|...|+...+.. +-+...|..+           .|...+.+..+.. +-+...|..+...|...|++++|
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A  106 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQA  106 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccccc
Confidence            456899999999999999864 2234555544           7888888776653 23678888899999999999999


Q ss_pred             HHHHHHHHHcCCCchHHH-----------------------------H----HHHHHHHHc-CCCCcHhhHHHHHHHHHc
Q 047010           71 MELLNEAIERGVTPNVVT-----------------------------L----IHLHNVIDI-GHIPRTITFNNVIQALCG  116 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~-----------------------------~----~~~~~~~~~-~~~~~~~~~~~li~~~~~  116 (153)
                      .+.+++.....  |+...                             +    ..+...... ...++..++..+-..+..
T Consensus       107 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         107 CEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            99999986632  11000                             0    111222221 123345566666677777


Q ss_pred             cCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047010          117 VGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       117 ~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~  151 (153)
                      .|++++|...|++..... +-+...|..+-..+.+
T Consensus       185 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~  218 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLAN  218 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcccccccccc-cccccchhhhhhcccc
Confidence            777777777777765432 1134445444444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=0.00029  Score=47.30  Aligned_cols=144  Identities=15%  Similarity=0.107  Sum_probs=100.5

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCC-hhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPN-VTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      ...|++++|...+....+..  |+ ...|..+           +|...+.+..... +.+...|..+-..+.+.|++++|
T Consensus       180 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  256 (388)
T d1w3ba_         180 NAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             HTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHH
Confidence            45788999999999888753  44 3344433           8888888877654 34667788889999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           71 MELLNEAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+.|++..+..-. +..++                 ..+.... .....+...+..+...+.+.|++++|...|++..+.
T Consensus       257 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  334 (388)
T d1w3ba_         257 IDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhh-ccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999998775321 12222                 1111111 223456678889999999999999999999988664


Q ss_pred             CCCCC-HHHHHHHHHHhhcCC
Q 047010          134 GKIPS-RTLYDTLIKKLDQQP  153 (153)
Q Consensus       134 ~v~p~-~~~~~~li~~~~~~g  153 (153)
                        .|+ ...+..+-..+.+.|
T Consensus       335 --~p~~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         335 --FPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             --CTTCHHHHHHHHHHHHTTT
T ss_pred             --CCCCHHHHHHHHHHHHHcC
Confidence              354 555666666665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=0.00014  Score=41.68  Aligned_cols=96  Identities=10%  Similarity=0.048  Sum_probs=74.2

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV   82 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~   82 (153)
                      .+.|++++|...|....+..                         +-+...|..+-.+|.+.|++++|.+.+.+..+.. 
T Consensus        14 ~~~g~~~eAi~~~~~al~~~-------------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-   67 (117)
T d1elwa_          14 LSVGNIDDALQCYSEAIKLD-------------------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-   67 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHHHHhcC-------------------------CcchhhhhcccccccccccccccchhhhhHHHhc-
Confidence            34567777777777766531                         2467889999999999999999999999998754 


Q ss_pred             CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010           83 TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT  144 (153)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~  144 (153)
                       |                 .+...|..+-.++...|++++|...|+...+.  .|+...+..
T Consensus        68 -p-----------------~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~  109 (117)
T d1elwa_          68 -P-----------------DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--EANNPQLKE  109 (117)
T ss_dssp             -T-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred             -c-----------------chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence             2                 24458999999999999999999999998864  465544433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=0.00034  Score=43.28  Aligned_cols=117  Identities=18%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             cccCChHHHHHHHHHHHHC--C-CCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDN--G-YHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE   79 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~--~-~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~   79 (153)
                      ...|++++|...|......  | +.++.....  -+...-..+...    ....+..+...+.+.|++++|...++...+
T Consensus        22 ~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~--w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~   95 (179)
T d2ff4a2          22 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQ--FVEPFATALVED----KVLAHTAKAEAEIACGRASAVIAELEALTF   95 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST--THHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccccccCcchH--HHHHHHHHHHHH----HHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            3568999999999998874  2 111111100  111111222221    346688899999999999999999999987


Q ss_pred             cCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 047010           80 RGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY-----EHGKIPSRTLYDT  144 (153)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~v~p~~~~~~~  144 (153)
                      ..  |                 -+...|..++.+|.+.|+.++|++.|+++.     +.|+.|+..+-..
T Consensus        96 ~~--P-----------------~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l  146 (179)
T d2ff4a2          96 EH--P-----------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  146 (179)
T ss_dssp             HS--T-----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             hC--C-----------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence            53  3                 245699999999999999999999999884     4699999876443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=0.00067  Score=45.18  Aligned_cols=139  Identities=10%  Similarity=-0.013  Sum_probs=92.4

Q ss_pred             ChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047010            7 DFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLN   75 (153)
Q Consensus         7 ~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~   75 (153)
                      ..++|..+|+...+...+.+...|...           .+..+++++...........|...+....+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            456788888888765444444444433           777788887765444445689999999999999999999999


Q ss_pred             HHHHcCCCchHHHH-----------------HHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC-CCCC
Q 047010           76 EAIERGVTPNVVTL-----------------IHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH-GKIP  137 (153)
Q Consensus        76 ~m~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~v~p  137 (153)
                      +..+.+........                 .++...... ...+...|...+....+.|+++.|..+|++..+. +..|
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            98776532222211                 112222221 2235678999999999999999999999998664 3454


Q ss_pred             C--HHHHHHHH
Q 047010          138 S--RTLYDTLI  146 (153)
Q Consensus       138 ~--~~~~~~li  146 (153)
                      .  ...|...+
T Consensus       238 ~~~~~iw~~~~  248 (308)
T d2onda1         238 EKSGEIWARFL  248 (308)
T ss_dssp             GGCHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            3  23454444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=0.00017  Score=43.51  Aligned_cols=67  Identities=12%  Similarity=0.018  Sum_probs=52.9

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      -+...|..+-.+|.+.|++++|.+.|++..+..  |+                 +..+|..+..++...|++++|...++
T Consensus        42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~-----------------~~~a~~~~g~~~~~~g~~~eA~~~~~  102 (159)
T d1a17a_          42 SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KK-----------------YIKGYYRRAASNMALGKFRAALRDYE  102 (159)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--cc-----------------chHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            367788888888889999999999998887653  22                 34578888888888999999998888


Q ss_pred             HHHHCC
Q 047010          129 LMYEHG  134 (153)
Q Consensus       129 ~m~~~~  134 (153)
                      +.....
T Consensus       103 ~a~~~~  108 (159)
T d1a17a_         103 TVVKVK  108 (159)
T ss_dssp             HHHHHS
T ss_pred             HHHHcC
Confidence            887643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=0.00025  Score=43.90  Aligned_cols=86  Identities=15%  Similarity=0.080  Sum_probs=64.8

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      |.+.|++++|...|....+..  |                       .+...|+.+-.+|.+.|++++|.+.|++..+. 
T Consensus        14 ~~~~g~~~~Ai~~~~kal~~~--p-----------------------~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-   67 (201)
T d2c2la1          14 LFVGRKYPEAAACYGRAITRN--P-----------------------LVAVYYTNRALCYLKMQQPEQALADCRRALEL-   67 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--S-----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--C-----------------------CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-
Confidence            446678888888887776642  2                       36677888888888899999999988887643 


Q ss_pred             CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                       .|+                 +..+|..+-.+|.+.|++++|...|+...
T Consensus        68 -~p~-----------------~~~a~~~lg~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          68 -DGQ-----------------SVKAHFFLGQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             -CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -CCC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             343                 33578888888888889999888888764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.0021  Score=42.45  Aligned_cols=47  Identities=13%  Similarity=0.089  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           34 EAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        34 ~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      ++...+.+..... -.++...|..+-..+.+.|++++|.+.|++....
T Consensus       154 ~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  201 (323)
T d1fcha_         154 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV  201 (323)
T ss_dssp             HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc
Confidence            4455555444332 2345677888888899999999999999987664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.59  E-value=0.00066  Score=38.42  Aligned_cols=77  Identities=13%  Similarity=-0.005  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|...+++..... +-+...|..+-.++.+.|++++|...|++..+..  |+                 +..+|..+-..
T Consensus        34 ~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-----------------~~~a~~~la~~   93 (112)
T d1hxia_          34 EAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PK-----------------DIAVHAALAVS   93 (112)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred             HHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cc-----------------cccchHHHHHH
Confidence            4555555554442 2367889999999999999999999999987653  32                 34588999999


Q ss_pred             HHccCcHHHHHHHHHHH
Q 047010          114 LCGVGKIDKALLLLFLM  130 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m  130 (153)
                      |...|++++|.+.|++.
T Consensus        94 y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          94 HTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHH
Confidence            99999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.52  E-value=0.0025  Score=38.00  Aligned_cols=115  Identities=11%  Similarity=0.015  Sum_probs=79.1

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV   82 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~   82 (153)
                      .+.|++.+|...|....+.-  |....+..-........       ....+|+.+-.+|.+.|++++|++.+++..+.. 
T Consensus        28 f~~~~y~~A~~~Y~~al~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-   97 (153)
T d2fbna1          28 FKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-   97 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHcCCHHHHHHHHHHHHhhC--cchhhhhhHHHHHhhhh-------HHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence            46788999999998887631  21111111111111111       134578889999999999999999999987653 


Q ss_pred             CchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047010           83 TPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIK  147 (153)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~  147 (153)
                       |+                 +..+|-.+..++...|++++|...|+...+..  |+.......+.
T Consensus        98 -p~-----------------~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l~  142 (153)
T d2fbna1          98 -KN-----------------NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYE  142 (153)
T ss_dssp             -TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred             -ch-----------------hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence             32                 45699999999999999999999999988754  65444333333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.004  Score=38.53  Aligned_cols=136  Identities=15%  Similarity=0.068  Sum_probs=90.4

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVM   71 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~   71 (153)
                      ...|++++|...|..+    .+|+...|..+           .|.+.|++..+.. +.+...|..+=.+|.+.|++++|.
T Consensus        16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            4578999999999764    24666666555           8888888777654 346678888989999999999999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHcCCC--Cc-HhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010           72 ELLNEAIERGVTPNVVTLIHLHNVIDIGHI--PR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK  148 (153)
Q Consensus        72 ~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~  148 (153)
                      +.|++-....- .+...     .....+..  ++ ..++..+-.++.+.|++++|...|....+....|........+..
T Consensus        91 ~~~~kAl~~~~-~n~~~-----~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~  164 (192)
T d1hh8a_          91 KDLKEALIQLR-GNQLI-----DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMEC  164 (192)
T ss_dssp             HHHHHHHHTTT-TCSEE-----ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHH
T ss_pred             HHHHHHHHhCc-cCchH-----HHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence            99998765311 00000     00000111  11 134556667888999999999999988776666655555555544


Q ss_pred             h
Q 047010          149 L  149 (153)
Q Consensus       149 ~  149 (153)
                      .
T Consensus       165 ~  165 (192)
T d1hh8a_         165 V  165 (192)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0025  Score=42.66  Aligned_cols=74  Identities=5%  Similarity=0.040  Sum_probs=53.7

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChh-hchHH------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVT-TYTIL------------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l------------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      +.+.+++|..+++...+.  .|+.. .|+..            +++..++...+.. +-+..+|..+-..+.+.|++++|
T Consensus        55 ~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eA  131 (315)
T d2h6fa1          55 RDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQE  131 (315)
T ss_dssp             HTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             hCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHH
Confidence            456788899999988885  45554 33322            6666666665542 23678888888889999999999


Q ss_pred             HHHHHHHHHc
Q 047010           71 MELLNEAIER   80 (153)
Q Consensus        71 ~~l~~~m~~~   80 (153)
                      ++.+++..+.
T Consensus       132 l~~~~kal~~  141 (315)
T d2h6fa1         132 LEFIADILNQ  141 (315)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhhhhhh
Confidence            9999988775

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.005  Score=37.27  Aligned_cols=104  Identities=11%  Similarity=0.010  Sum_probs=72.5

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      |.+.|++++|...|....+.-  |....+..- -......+       ...+|+.+-.+|.+.|++++|+..++...+..
T Consensus        23 ~~~~~~~~~Ai~~y~~al~~~--~~~~~~~~~-~~~~~~~~-------~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          23 YFKEGKYKQALLQYKKIVSWL--EYESSFSNE-EAQKAQAL-------RLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHT--TTCCCCCSH-HHHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHHh--hhccccchH-HHhhhchh-------HHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            345788999999998877641  111111100 00011111       12467788899999999999999999988753


Q ss_pred             CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010           82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                        |+                 +...|.-+-.+|...|++++|...|+...+..
T Consensus        93 --p~-----------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          93 --SN-----------------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             --TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             --cc-----------------chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence              32                 45588899999999999999999999987743

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0011  Score=38.16  Aligned_cols=93  Identities=13%  Similarity=0.039  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG---RSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNV  110 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g---~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (153)
                      .|.+.|++....+ +.+..++..+-.++.+.+   +.++|.++|++....+..|+.                 ..+|..+
T Consensus        17 ~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~-----------------~~~~~~L   78 (122)
T d1nzna_          17 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-----------------RDYVFYL   78 (122)
T ss_dssp             HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-----------------HHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH-----------------HHHHHHH
Confidence            3344444444332 246677777777777644   445688888887654432221                 2366777


Q ss_pred             HHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047010          111 IQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLI  146 (153)
Q Consensus       111 i~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li  146 (153)
                      -.+|.+.|++++|...|++..+.  .|+..-...+.
T Consensus        79 g~~y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~  112 (122)
T d1nzna_          79 AVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence            88889999999999999999874  47655444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0031  Score=36.35  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=69.7

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGV   82 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~   82 (153)
                      .+.|++++|...|....+.+                         +.+...|..+-.+|.+.|++++|.+.+++.++..-
T Consensus        15 ~~~~~y~~Ai~~y~~al~~~-------------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~   69 (128)
T d1elra_          15 YKKKDFDTALKHYDKAKELD-------------------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-------------------------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc
Confidence            34566667766666665531                         24678899999999999999999999999876310


Q ss_pred             -CchHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047010           83 -TPNVVTLIHLHNVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDT  144 (153)
Q Consensus        83 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~  144 (153)
                       .+...              ++ ..+|..+-..+...+++++|...|......  .|+......
T Consensus        70 ~~~~~~--------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~  117 (128)
T d1elra_          70 ENREDY--------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK  117 (128)
T ss_dssp             HSTTCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred             ccHHHH--------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHH
Confidence             00000              00 136777888888999999999999877653  345544433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=0.002  Score=39.68  Aligned_cols=67  Identities=7%  Similarity=0.098  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHcCCC
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIE-----RGVTPNVVTLIHLHNVIDIGHI  101 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~~~~~~~~~~~~~~~  101 (153)
                      +++..+++..... +-+...|..++.+|.+.|+.++|++.|++..+     .|+.|...+-.+...+......
T Consensus        85 ~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~~~~~  156 (179)
T d2ff4a2          85 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPL  156 (179)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhCCCC
Confidence            5666666665542 35889999999999999999999999999744     6999998877777776655443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0065  Score=34.30  Aligned_cols=74  Identities=18%  Similarity=0.147  Sum_probs=58.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010           59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS  138 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~  138 (153)
                      ..+.+.|++++|...|++..+..  |+                 +...|..+-.+|...|++++|...+....+.+ ..+
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~--p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~   70 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLD--PH-----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDW   70 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC--Cc-----------------chhhhhcccccccccccccccchhhhhHHHhc-cch
Confidence            45788999999999999998753  32                 44589999999999999999999999998764 346


Q ss_pred             HHHHHHHHHHhhcC
Q 047010          139 RTLYDTLIKKLDQQ  152 (153)
Q Consensus       139 ~~~~~~li~~~~~~  152 (153)
                      ...|..+-.++.+.
T Consensus        71 ~~~~~~~g~~~~~~   84 (117)
T d1elwa_          71 GKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHc
Confidence            66676666665544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.013  Score=35.73  Aligned_cols=83  Identities=14%  Similarity=-0.014  Sum_probs=63.1

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHH
Q 047010           49 PDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLF  128 (153)
Q Consensus        49 ~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  128 (153)
                      |+.....-.=+.|.+.|++++|.+.|.+.....  |+                 +...|+-+-.+|.+.|++++|...|+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~-----------------~~~~~~~lg~~y~~~~~~~~Ai~~~~   62 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PL-----------------VAVYYTNRALCYLKMQQPEQALADCR   62 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHhHHHHHhhhhhhhhhhHHHH
Confidence            455555555578899999999999999987653  32                 34589999999999999999999999


Q ss_pred             HHHHCCCCC-CHHHHHHHHHHhhcC
Q 047010          129 LMYEHGKIP-SRTLYDTLIKKLDQQ  152 (153)
Q Consensus       129 ~m~~~~v~p-~~~~~~~li~~~~~~  152 (153)
                      ...+.  .| +...|..+-.++.+.
T Consensus        63 ~al~l--~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1          63 RALEL--DGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHTTS--CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHh--CCCcHHHHHHHHHHHHHC
Confidence            98764  45 455666666655543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0071  Score=35.96  Aligned_cols=75  Identities=16%  Similarity=0.036  Sum_probs=59.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCC
Q 047010           59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPS  138 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~  138 (153)
                      +.|.+.|++++|...|++..+..  |+                 +...|..+-..|...|++++|...|+...+.+ .-+
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~--p~-----------------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~   77 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELN--PS-----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKY   77 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHcCCHHHHHHHhhhccccc--hh-----------------hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccc
Confidence            46789999999999999988753  33                 44589999999999999999999999998754 234


Q ss_pred             HHHHHHHHHHhhcCC
Q 047010          139 RTLYDTLIKKLDQQP  153 (153)
Q Consensus       139 ~~~~~~li~~~~~~g  153 (153)
                      ...|..+..++...|
T Consensus        78 ~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          78 IKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcC
Confidence            567777766665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.019  Score=36.35  Aligned_cols=130  Identities=14%  Similarity=0.015  Sum_probs=88.4

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEV   70 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a   70 (153)
                      |.+.|++++|...|+...+.. +-+..+|..+           +|...|++...... -+..+|..+-.+|...|++++|
T Consensus        47 y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A  124 (259)
T d1xnfa_          47 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLA  124 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHH
Confidence            456799999999999998853 2344556555           88888888887642 2456788888999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHH----------------------------------------------HHHHHHHHcCC----
Q 047010           71 MELLNEAIERGVTPNVVTL----------------------------------------------IHLHNVIDIGH----  100 (153)
Q Consensus        71 ~~l~~~m~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~----  100 (153)
                      .+.|++..+..-. +....                                              ...........    
T Consensus       125 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (259)
T d1xnfa_         125 QDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS  203 (259)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999988775422 22211                                              00000000000    


Q ss_pred             -CCc-HhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010          101 -IPR-TITFNNVIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus       101 -~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                       .|+ ..+|..+-..|...|++++|...|+.....+
T Consensus       204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence             011 1356667788899999999999999887654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.018  Score=35.47  Aligned_cols=76  Identities=13%  Similarity=0.054  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      .|++.|.++    .+|+..+|..+=.+|...|++++|++.|++-.+..  |+                 +...|.-+-.+
T Consensus        23 ~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~-----------------~~~a~~~~g~~   79 (192)
T d1hh8a_          23 GALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KH-----------------LAVAYFQRGML   79 (192)
T ss_dssp             HHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHH
T ss_pred             HHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hh-----------------hhhhHHHHHHH
Confidence            556666543    46788899999999999999999999999988753  32                 34588899999


Q ss_pred             HHccCcHHHHHHHHHHHHH
Q 047010          114 LCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~  132 (153)
                      |.+.|++++|...|++..+
T Consensus        80 ~~~~g~~~~A~~~~~kAl~   98 (192)
T d1hh8a_          80 YYQTEKYDLAIKDLKEALI   98 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHH
Confidence            9999999999999998754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.059  Score=35.33  Aligned_cols=117  Identities=12%  Similarity=0.014  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-----------------HHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTL-----------------IHLHNVI   96 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~-----------------~~~~~~~   96 (153)
                      .+..++++..+...+.+...|.......-+.|+++.|..+|+++.+........++                 .++....
T Consensus        82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al  161 (308)
T d2onda1          82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            45667776665555567778899999999999999999999998875432222222                 1222222


Q ss_pred             HcCCCCcHhhHHHHHH-HHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 047010           97 DIGHIPRTITFNNVIQ-ALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus        97 ~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      .... .+...|-.... -+...|+.+.|..+|+.+.+.. .-+...|...++...+.
T Consensus       162 ~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~  216 (308)
T d2onda1         162 EDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHL  216 (308)
T ss_dssp             TSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTT
T ss_pred             HhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHc
Confidence            2121 12222222222 2334577888888888876642 23455666666655444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0029  Score=36.48  Aligned_cols=55  Identities=16%  Similarity=0.106  Sum_probs=47.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      +.|.+.|++++|.+.|.+..+.+  |+                 +...|..+-.+|.+.|++++|...+++..+
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al~~~--p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAKELD--PT-----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--cc-----------------cHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            56889999999999999988753  32                 445899999999999999999999998865

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.25  E-value=0.025  Score=31.48  Aligned_cols=74  Identities=11%  Similarity=-0.005  Sum_probs=56.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010           57 VMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI  136 (153)
Q Consensus        57 ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~  136 (153)
                      +-..+.+.|++++|...|++..+..  |+                 +...|..+-..+.+.|++++|...|++..+.. +
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p   81 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE--PE-----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLD-P   81 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS--TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc--cc-----------------cchhhhhhhhhhhhhhhHHHhhcccccccccc-c
Confidence            3446788999999999999988753  32                 34589999999999999999999999987754 2


Q ss_pred             CCHHHHHHHHHHhh
Q 047010          137 PSRTLYDTLIKKLD  150 (153)
Q Consensus       137 p~~~~~~~li~~~~  150 (153)
                      -+...+..+-..|.
T Consensus        82 ~~~~a~~~la~~y~   95 (112)
T d1hxia_          82 KDIAVHAALAVSHT   95 (112)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHH
Confidence            24555555554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.10  E-value=0.084  Score=34.20  Aligned_cols=103  Identities=11%  Similarity=0.048  Sum_probs=70.8

Q ss_pred             ccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047010            4 NKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVT   83 (153)
Q Consensus         4 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~   83 (153)
                      +.|++++|...+....+..                         +-|...+..+...++..|++++|.+.|+...+..  
T Consensus         8 ~~G~l~eAl~~l~~al~~~-------------------------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--   60 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-------------------------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--   60 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--
T ss_pred             HCCCHHHHHHHHHHHHHHC-------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence            4678888888888877752                         2488999999999999999999999999987753  


Q ss_pred             chHHH-HHHHHH----------HHHcC-------CCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           84 PNVVT-LIHLHN----------VIDIG-------HIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        84 ~~~~~-~~~~~~----------~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      |+... +..+..          .....       ..++...+......+.+.|+.++|..++....+.
T Consensus        61 P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            43332 211111          11110       1122344445566777899999999999988653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.11  Score=34.25  Aligned_cols=141  Identities=12%  Similarity=0.133  Sum_probs=86.7

Q ss_pred             CChHHHHHHHHHHHHCCCCCChhhchHH-----------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 047010            6 NDFFEARKVIDYMFDNGYHPNVTTYTIL-----------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELL   74 (153)
Q Consensus         6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~   74 (153)
                      +++++|...++...+.. +-+...|..+           +|+..+.+..+.. +.+...|..+-..+.+.|++++|++.+
T Consensus        92 ~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~  169 (315)
T d2h6fa1          92 KDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYV  169 (315)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHH
Confidence            36899999999988753 2334455444           8888888887753 347899999999999999999999999


Q ss_pred             HHHHHcCCCchHHHHH--------------------HHHHHH-HcCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHH
Q 047010           75 NEAIERGVTPNVVTLI--------------------HLHNVI-DIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYE  132 (153)
Q Consensus        75 ~~m~~~~~~~~~~~~~--------------------~~~~~~-~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  132 (153)
                      ++..+....- ...+.                    .+.... .-...| |...|+-+...+.. ...+++...++...+
T Consensus       170 ~~al~~~p~n-~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         170 DQLLKEDVRN-NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHCTTC-HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred             HHHHHHCCcc-HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence            9998865322 22210                    000000 011223 44556555444443 345777777776655


Q ss_pred             CCCC-CCHHHHHHHHHHhh
Q 047010          133 HGKI-PSRTLYDTLIKKLD  150 (153)
Q Consensus       133 ~~v~-p~~~~~~~li~~~~  150 (153)
                      .... .+...+..+.+.|.
T Consensus       248 l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         248 LQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HTTTCCCHHHHHHHHHHHH
T ss_pred             hCCCcCCHHHHHHHHHHHH
Confidence            3322 23445555555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.018  Score=32.83  Aligned_cols=80  Identities=15%  Similarity=0.074  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHcc---CcHHHHHHHHHHH
Q 047010           54 YTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGV---GKIDKALLLLFLM  130 (153)
Q Consensus        54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m  130 (153)
                      ...+++.+...+++++|++.|++....+  |                 .+..++.-+-.++.+.   +++++|..+|++.
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p-----------------~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~   62 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAG--S-----------------VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL   62 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS--C-----------------CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhC--C-----------------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3578889999999999999999988754  2                 2334666677777664   4556799999998


Q ss_pred             HHCCCCCCH-HHHHHHHHHhhcC
Q 047010          131 YEHGKIPSR-TLYDTLIKKLDQQ  152 (153)
Q Consensus       131 ~~~~v~p~~-~~~~~li~~~~~~  152 (153)
                      ...+-.|+. ..+..+=.+|.+.
T Consensus        63 l~~~~~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_          63 LPKGSKEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccCCchHHHHHHHHHHHHHHH
Confidence            765533332 2444554555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.77  E-value=0.082  Score=31.45  Aligned_cols=111  Identities=8%  Similarity=-0.027  Sum_probs=72.7

Q ss_pred             ccccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047010            2 YCNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERG   81 (153)
Q Consensus         2 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~   81 (153)
                      +.+.|++.+|...|......  .|.......- .......+       ....|+.+-.+|.+.|++++|...+++..+..
T Consensus        25 ~~~~~~~~~A~~~Y~~al~~--~~~~~~~~~~-~~~~~~~~-------~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          25 YFKGGKYVQAVIQYGKIVSW--LEMEYGLSEK-ESKASESF-------LLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--HTTCCSCCHH-HHHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHH--HHHhhccchh-hhhhcchh-------HHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            34678888998888776552  0111100000 00000111       23456777888999999999999999987642


Q ss_pred             CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHH
Q 047010           82 VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYD  143 (153)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~  143 (153)
                        |+                 +..+|..+..++...|++++|...|....+.  .|+.....
T Consensus        95 --p~-----------------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~  135 (168)
T d1kt1a1          95 --SA-----------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAAR  135 (168)
T ss_dssp             --TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHH
T ss_pred             --cc-----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence              32                 4458888889999999999999999998874  45544433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.066  Score=34.79  Aligned_cols=29  Identities=10%  Similarity=-0.061  Sum_probs=25.4

Q ss_pred             hhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010          105 ITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus       105 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+|..+...+...|++++|...|++....
T Consensus       159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         159 KCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            46888899999999999999999998653

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.47  E-value=0.037  Score=30.27  Aligned_cols=57  Identities=12%  Similarity=0.315  Sum_probs=42.5

Q ss_pred             HHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047010           91 HLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRTLYDTLIKK  148 (153)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~~~~~li~~  148 (153)
                      .+..+......|+..+..+.+.+|.+.+++..|.++|+..+.+ +.++...|..+++-
T Consensus        28 gmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe   84 (105)
T d1v54e_          28 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE   84 (105)
T ss_dssp             HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred             HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence            3344445556667779999999999999999999999998754 23456677766653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.14  Score=32.03  Aligned_cols=81  Identities=15%  Similarity=0.028  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQA  113 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  113 (153)
                      +|.+.|++..+.. +-+..+|+.+=.+|.+.|++++|.+.|++..+..  |+                 +..+|..+-..
T Consensus        55 ~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-----------------~~~a~~~lg~~  114 (259)
T d1xnfa_          55 LARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-----------------YNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------CTHHHHHHHHH
T ss_pred             HHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hh-----------------hhhhHHHHHHH
Confidence            7788887777653 2367889999999999999999999999988753  22                 23467778888


Q ss_pred             HHccCcHHHHHHHHHHHHHCC
Q 047010          114 LCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus       114 ~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      +...|++++|...|+...+..
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhHHHHHHHHHHHHhhc
Confidence            888999999999998876643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.31  E-value=0.12  Score=30.55  Aligned_cols=65  Identities=20%  Similarity=0.100  Sum_probs=55.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHH
Q 047010           50 DVYTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFL  129 (153)
Q Consensus        50 ~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  129 (153)
                      +...|..+-.+|.+.|++++|...+.+..+.  .|+                 +...|..+-.++.+.|++++|...|+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~-----------------~~~a~~~~g~~~~~l~~~~~A~~~~~~  136 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPS-----------------NTKALYRRAQGWQGLKEYDQALADLKK  136 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhh-----------------hhhHHHhHHHHHHHccCHHHHHHHHHH
Confidence            4566788888999999999999999998764  343                 445899999999999999999999999


Q ss_pred             HHHC
Q 047010          130 MYEH  133 (153)
Q Consensus       130 m~~~  133 (153)
                      ..+.
T Consensus       137 al~l  140 (169)
T d1ihga1         137 AQEI  140 (169)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9874

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.29  Score=31.47  Aligned_cols=27  Identities=15%  Similarity=0.034  Sum_probs=23.5

Q ss_pred             hhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010          105 ITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus       105 ~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      .++..+-..|.+.|++++|...+++..
T Consensus       292 ~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         292 RNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            468888889999999999999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.14  Score=33.09  Aligned_cols=44  Identities=11%  Similarity=-0.028  Sum_probs=25.5

Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHhh
Q 047010          107 FNNVIQALCGVGKIDKALLLLFLMYEHGKI-PS---RTLYDTLIKKLD  150 (153)
Q Consensus       107 ~~~li~~~~~~g~~~~a~~~~~~m~~~~v~-p~---~~~~~~li~~~~  150 (153)
                      +...+..+...|+++.|...|.+..+.... ++   ......++.++.
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~  249 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN  249 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence            334445666789999999999988654321 11   234455555543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=93.85  E-value=0.18  Score=32.54  Aligned_cols=53  Identities=26%  Similarity=0.337  Sum_probs=45.7

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           62 CKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        62 ~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      .+.|++++|...+++-++..  |+                 |...+..+...++..|++++|...|+...+.
T Consensus         7 L~~G~l~eAl~~l~~al~~~--P~-----------------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS--PK-----------------DASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC--TT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC--CC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            46799999999999988763  32                 4568999999999999999999999998764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.24  Score=26.31  Aligned_cols=65  Identities=15%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCc-HhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           56 AVMDGFCKVGRSNEVMELLNEAIERGV-TPNVVTLIHLHNVIDIGHIPR-TITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        56 ~ll~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      -+=..+.+.|++++|.+.|++-.+..- .+.              ..++ ..+++.+-.++.+.|++++|...+++..+.
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~--------------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEI--------------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc--------------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            344567889999999999998765310 000              0111 347888999999999999999999998875


Q ss_pred             C
Q 047010          134 G  134 (153)
Q Consensus       134 ~  134 (153)
                      .
T Consensus        76 ~   76 (95)
T d1tjca_          76 D   76 (95)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.04  E-value=0.42  Score=27.71  Aligned_cols=68  Identities=10%  Similarity=0.112  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHH
Q 047010           51 VYTYTAVMDGFCKVGRSNEVMELLNEAIER-----GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALL  125 (153)
Q Consensus        51 ~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  125 (153)
                      ...|+.+-.+|.+.|++++|.+-+++..+.     ...++...             .....++.+-.+|...|++++|..
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~-------------~~~~a~~~~g~~~~~lg~~eeA~~  121 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK-------------LWISAVYSRALALDGLGRGAEAMP  121 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH-------------HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc-------------hhHHHHhhhHHHHHHHHHHHHHHH
Confidence            467888999999999999999999987652     11221110             012357778899999999999999


Q ss_pred             HHHHHH
Q 047010          126 LLFLMY  131 (153)
Q Consensus       126 ~~~~m~  131 (153)
                      .|++..
T Consensus       122 ~~~~Al  127 (156)
T d2hr2a1         122 EFKKVV  127 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.72  E-value=0.46  Score=27.34  Aligned_cols=66  Identities=15%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC-----------cHHHHHHHHHHHHH
Q 047010           64 VGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG-----------KIDKALLLLFLMYE  132 (153)
Q Consensus        64 ~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~  132 (153)
                      .+.+++|.+.|++..+.  .|+                 +..+|..+-.+|...|           .++.|...|+...+
T Consensus        54 ~~~~~~Ai~~~~kAl~l--~P~-----------------~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLI--DPK-----------------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh--cch-----------------hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            34567888888888764  232                 3346666666665543           46888888888776


Q ss_pred             CCCCCCHHHHHHHHHHhh
Q 047010          133 HGKIPSRTLYDTLIKKLD  150 (153)
Q Consensus       133 ~~v~p~~~~~~~li~~~~  150 (153)
                        +.|+...|..-+..+.
T Consensus       115 --l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1         115 --EQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             --HCTTCHHHHHHHHHHH
T ss_pred             --cCCCHHHHHHHHHHHH
Confidence              4588777776665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.68  Score=29.57  Aligned_cols=28  Identities=21%  Similarity=0.126  Sum_probs=19.6

Q ss_pred             HhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010          104 TITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ...+......+...+++..+...+....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~  199 (366)
T d1hz4a_         172 LQCLAMLIQCSLARGDLDNARSQLNRLE  199 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3455666667777888888888777654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.61  Score=27.50  Aligned_cols=86  Identities=6%  Similarity=-0.103  Sum_probs=56.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCC
Q 047010           59 DGFCKVGRSNEVMELLNEAIERG---VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGK  135 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v  135 (153)
                      +.+.+.|++++|.+.|.+..+.-   .............+.       ..+|+-+-.+|.+.|++++|...++...+.+ 
T Consensus        21 ~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~-------~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-   92 (170)
T d1p5qa1          21 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR-------LASHLNLAMCHLKLQAFSAAIESCNKALELD-   92 (170)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhH-------HHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence            46889999999999999886631   111111101111111       2367778889999999999999999987754 


Q ss_pred             CCCHHHHHHHHHHhhcC
Q 047010          136 IPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       136 ~p~~~~~~~li~~~~~~  152 (153)
                      +-+...|..+-.++...
T Consensus        93 p~~~~a~~~~g~~~~~~  109 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAV  109 (170)
T ss_dssp             TTCHHHHHHHHHHHHHT
T ss_pred             ccchhhhHHHHHHHHHh
Confidence            22666666666655544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.47  Score=25.06  Aligned_cols=59  Identities=8%  Similarity=0.117  Sum_probs=41.1

Q ss_pred             cccCChHHHHHHHHHHHHCCCCCChhhchHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010            3 CNKNDFFEARKVIDYMFDNGYHPNVTTYTILEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus         3 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      .+.|++++|...|++..+..  |               .  .....+ ...+++.+-.+|.+.|++++|.+.+++..+.
T Consensus        16 ~~~g~y~~A~~~~~~Al~~~--~---------------~--~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          16 YTEADYYHTELWMEQALRQL--D---------------E--GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH--H---------------T--TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHH--h---------------h--hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            35677777777777665421  0               0  001122 2467888999999999999999999998875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.72  E-value=0.88  Score=26.55  Aligned_cols=92  Identities=7%  Similarity=-0.072  Sum_probs=56.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHccCcHHHHHHHHHHHHHC
Q 047010           55 TAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIP-RTITFNNVIQALCGVGKIDKALLLLFLMYEH  133 (153)
Q Consensus        55 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  133 (153)
                      ...-..+.+.|++++|.+.|.+..+.-  +...  ............| +...|..+-.++.+.|++++|...+....+.
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~--~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR--AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH--HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh--hhhh--hhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            344556788999999999998875420  0000  0000000111112 3456777888999999999999999998875


Q ss_pred             CCCCCHHHHHHHHHHhhc
Q 047010          134 GKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       134 ~v~p~~~~~~~li~~~~~  151 (153)
                      . +-+...|..+-.++.+
T Consensus       107 ~-p~~~~a~~~~g~~~~~  123 (169)
T d1ihga1         107 D-PSNTKALYRRAQGWQG  123 (169)
T ss_dssp             C-TTCHHHHHHHHHHHHH
T ss_pred             h-hhhhhHHHhHHHHHHH
Confidence            4 2355566555555544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=1.8  Score=30.19  Aligned_cols=80  Identities=11%  Similarity=0.067  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHH
Q 047010           52 YTYTAVMDGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMY  131 (153)
Q Consensus        52 ~t~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  131 (153)
                      ..+..+=+.+...|++++|...|++..+.  .|+                 +..+|+.+-..+...|+..+|...|.+..
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~-----------------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--VPS-----------------NGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------BSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC-----------------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666677778888888888876654  232                 33689999999999999999999999887


Q ss_pred             HCCCCCCHHHHHHHHHHhhc
Q 047010          132 EHGKIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       132 ~~~v~p~~~~~~~li~~~~~  151 (153)
                      ... .|-...+..|...+.+
T Consensus       214 ~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         214 AVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             SSS-BCCHHHHHHHHHHHHH
T ss_pred             hCC-CCCHHHHHHHHHHHHH
Confidence            755 4677888888777653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.55  E-value=0.87  Score=26.23  Aligned_cols=85  Identities=14%  Similarity=-0.062  Sum_probs=57.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCC
Q 047010           59 DGFCKVGRSNEVMELLNEAIERG----VTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  134 (153)
                      +.+.+.|++++|...|.+..+.-    ..++.........       ....+|+-+-.+|.+.|++++|...++...+.+
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhh-------HHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            56778999999999999887631    1122221111111       123477888899999999999999999987754


Q ss_pred             CCCCHHHHHHHHHHhhc
Q 047010          135 KIPSRTLYDTLIKKLDQ  151 (153)
Q Consensus       135 v~p~~~~~~~li~~~~~  151 (153)
                       +.+...|..+-.++..
T Consensus        98 -p~~~ka~~~~g~~~~~  113 (153)
T d2fbna1          98 -KNNVKALYKLGVANMY  113 (153)
T ss_dssp             -TTCHHHHHHHHHHHHH
T ss_pred             -chhhhhhHHhHHHHHH
Confidence             3356677666665544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.57  E-value=0.39  Score=27.28  Aligned_cols=46  Identities=11%  Similarity=0.130  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDV-YTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      .+..++.++...+. .+. ..+--+--+|.+.|++++|.+.++...+.
T Consensus        56 ~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          56 LGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            78888988886542 233 45566777899999999999999998875

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.37  E-value=1.3  Score=24.00  Aligned_cols=47  Identities=11%  Similarity=0.145  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047010           34 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEVMELLNEAIER   80 (153)
Q Consensus        34 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~g~~~~a~~l~~~m~~~   80 (153)
                      +..+-+.++......|+...-.+.+.+|.|.+++..|.++|+-.+..
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34445566777788899999999999999999999999999988654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=87.24  E-value=1.5  Score=24.51  Aligned_cols=105  Identities=8%  Similarity=-0.109  Sum_probs=59.8

Q ss_pred             CChHHHHHHHHHHHHCCCCCChhhchH------HHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 047010            6 NDFFEARKVIDYMFDNGYHPNVTTYTI------LEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGRSNEVMELLN   75 (153)
Q Consensus         6 ~~~~~a~~~~~~m~~~~~~~~~~~~~~------l~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~g~~~~a~~l~~   75 (153)
                      .|+++|...|....+.|..........      -.++..+.+.-+.|   +...+..|=..|..    ..+.++|.++|+
T Consensus         7 kd~~~A~~~~~kaa~~g~~~a~~~l~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~   83 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYS   83 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCChhhhhhhccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHh
Confidence            478899999999888773322111100      06677777666665   23333333333332    446788888888


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH----ccCcHHHHHHHHHHHHHCC
Q 047010           76 EAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALC----GVGKIDKALLLLFLMYEHG  134 (153)
Q Consensus        76 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~  134 (153)
                      +-.+.|.++                     ....|-..|.    ...+.++|.++|+...+.|
T Consensus        84 ~aa~~g~~~---------------------a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          84 KACGLNDQD---------------------GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHTTCHH---------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhccCcch---------------------HHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            877766422                     2222222222    2346778888888777666

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.53  E-value=2.3  Score=24.29  Aligned_cols=72  Identities=19%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             HHHHHH--HHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHccCcHHHHHHHH
Q 047010           52 YTYTAV--MDGFCKVGRSNEVMELLNEAIERG-VTPNVVTLIHLHNVIDIGHI-PRTITFNNVIQALCGVGKIDKALLLL  127 (153)
Q Consensus        52 ~t~~~l--l~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~  127 (153)
                      .+|..+  -..+.+.|++++|++.|++-.+.. -.|+....         ... .....|+.+-.+|.+.|++++|...+
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~---------~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~   78 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF---------DHAGFDAFCHAGLAEALAGLRSFDEALHSA   78 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC---------CHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc---------ccchhHHHHHHHHHHHHHHcCccchhhHhh
Confidence            456666  445667899999999999987621 11210000         000 01347888999999999999999999


Q ss_pred             HHHHH
Q 047010          128 FLMYE  132 (153)
Q Consensus       128 ~~m~~  132 (153)
                      ++..+
T Consensus        79 ~~al~   83 (156)
T d2hr2a1          79 DKALH   83 (156)
T ss_dssp             HHHHH
T ss_pred             hhhhh
Confidence            87753

>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: FUR-like
domain: Ferric uptake regulation protein, FUR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.79  E-value=2.4  Score=23.88  Aligned_cols=59  Identities=14%  Similarity=0.201  Sum_probs=44.8

Q ss_pred             HHHHcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHcCC
Q 047010           41 NVKNDGLKPDVYTYTAVMDGFCKV-GRSNEVMELLNEAIERGVTPNVV-TLIHLHNVIDIGH  100 (153)
Q Consensus        41 ~m~~~g~~~~~~t~~~ll~~~~~~-g~~~~a~~l~~~m~~~~~~~~~~-~~~~~~~~~~~~~  100 (153)
                      +++++|.+++. .-..+++.+... +..-.|.++++.+.+.+..++.. +|+.+..+.+.|+
T Consensus         6 ~Lr~~GlR~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gl   66 (134)
T d1mzba_           6 ELRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL   66 (134)
T ss_dssp             HHHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred             HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccE
Confidence            47788887766 445677777766 44788999999999998777766 5688888887765

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=83.26  E-value=2.7  Score=24.07  Aligned_cols=112  Identities=15%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             cCChHHHHHHHHHHHHCCCCCChhhc---hHH---HHHHHHHHHHHcCC--------------------CccHHHHHHHH
Q 047010            5 KNDFFEARKVIDYMFDNGYHPNVTTY---TIL---EAYEMLMNVKNDGL--------------------KPDVYTYTAVM   58 (153)
Q Consensus         5 ~~~~~~a~~~~~~m~~~~~~~~~~~~---~~l---~a~~~~~~m~~~g~--------------------~~~~~t~~~ll   58 (153)
                      .|.+++..++.....++. ..+.+-|   |.+   ..-.++.-+..-|-                    ..++.-.+-.+
T Consensus        15 dG~ve~Gveii~k~~~ss-~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vdlAL   93 (161)
T d1wy6a1          15 DGYIDEGVKIVLEITKSS-TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKAL   93 (161)
T ss_dssp             TTCHHHHHHHHHHHHHHS-CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             hhhHHhHHHHHHHHcccC-CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHHHHH
Confidence            578888888888877752 1122222   333   12223333322221                    13444456677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCC
Q 047010           59 DGFCKVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKI  136 (153)
Q Consensus        59 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~  136 (153)
                      +...+.|.-++-.++.+.+.+.+-                   |+....-.+-.+|.+.|...++.+++.+.-+.|+.
T Consensus        94 d~lv~~~kkd~Ld~i~~~l~kn~~-------------------i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          94 DILVIQGKRDKLEEIGREILKNNE-------------------VSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC--CC-------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            777777777777777777655442                   22336678889999999999999999999888863

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.00  E-value=1.8  Score=24.39  Aligned_cols=58  Identities=10%  Similarity=0.108  Sum_probs=39.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010           63 KVGRSNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT  140 (153)
Q Consensus        63 ~~g~~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~  140 (153)
                      ...++++|..+|++..+.+ +.+..                 ..+=-+--+|.+.|+++.|.+.++.+.+.  .|+..
T Consensus        50 ~~~d~~~gI~lLe~~~~~~-p~~~r-----------------d~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~  107 (124)
T d2pqrb1          50 DVNDERLGVKILTDIYKEA-ESRRR-----------------ECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK  107 (124)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-GGGHH-----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             cHHHHHHHHHHHHHHHhcC-chhHH-----------------HHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence            3456788999999987643 22221                 13333444577999999999999999874  45543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=81.43  E-value=3.3  Score=23.91  Aligned_cols=91  Identities=7%  Similarity=-0.140  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccCcHHHHHHHHHHH
Q 047010           54 YTAVMDGFCKVGRSNEVMELLNEAIER---GVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVGKIDKALLLLFLM  130 (153)
Q Consensus        54 ~~~ll~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  130 (153)
                      +.-.=..+.+.|++++|.+.|.+....   ...++.........+       ....|+-+-.+|.+.|++++|...++..
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF-------LLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchh-------HHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            334445688899999999999886541   122211111111111       1235666778889999999999999998


Q ss_pred             HHCCCCCCHHHHHHHHHHhhcC
Q 047010          131 YEHGKIPSRTLYDTLIKKLDQQ  152 (153)
Q Consensus       131 ~~~~v~p~~~~~~~li~~~~~~  152 (153)
                      .+.. +.+...|..+-.++...
T Consensus        91 l~l~-p~~~~a~~~~~~~~~~l  111 (168)
T d1kt1a1          91 LGLD-SANEKGLYRRGEAQLLM  111 (168)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHT
T ss_pred             hhcc-cchHHHHHHHHHHHHHc
Confidence            7754 34566666666655543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.32  E-value=4.9  Score=25.77  Aligned_cols=36  Identities=17%  Similarity=0.058  Sum_probs=28.2

Q ss_pred             cHhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCHH
Q 047010          103 RTITFNNVIQALCGVGKIDKALLLLFLMYEHGKIPSRT  140 (153)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~v~p~~~  140 (153)
                      +..+|..+...+...|++++|...++...+.  .|+..
T Consensus       275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~  310 (334)
T d1dcea1         275 CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA  310 (334)
T ss_dssp             HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccH
Confidence            3456777888899999999999999998774  46433

>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}

class: All alpha proteins
fold: Methionine synthase domain-like
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Pectobacterium carotovorum [TaxId: 554]

Probab=81.10  E-value=2  Score=21.19  Aligned_cols=63  Identities=8%  Similarity=0.129  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHccC-cHHHHHHHHHH
Q 047010           53 TYTAVMDGFCKVGR--SNEVMELLNEAIERGVTPNVVTLIHLHNVIDIGHIPRTITFNNVIQALCGVG-KIDKALLLLFL  129 (153)
Q Consensus        53 t~~~ll~~~~~~g~--~~~a~~l~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~  129 (153)
                      ||..+|+-....++  .+++..+++.+....+++.                    --.+++.++...| ..++...+.+.
T Consensus         1 t~~~il~kl~~g~~Ls~ee~~~~~~~i~~g~~~d~--------------------qiaafL~al~~kg~t~dEi~g~~~a   60 (69)
T d1khda1           1 THQPILEKLFKSQSMTQEESHQLFAAIVRGELEDS--------------------QLAAALISMKMRGERPEEIAGAASA   60 (69)
T ss_dssp             CCHHHHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH--------------------HHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHH--------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            46667777766654  5778888888865544332                    3345555554444 67777777788


Q ss_pred             HHHCCC
Q 047010          130 MYEHGK  135 (153)
Q Consensus       130 m~~~~v  135 (153)
                      |++++.
T Consensus        61 m~~~~~   66 (69)
T d1khda1          61 LLADAQ   66 (69)
T ss_dssp             HHHTSC
T ss_pred             HHHhCC
Confidence            877653