Citrus Sinensis ID: 047017
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 534 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SR00 | 602 | Pentatricopeptide repeat- | yes | no | 0.945 | 0.838 | 0.666 | 0.0 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.872 | 0.779 | 0.427 | 1e-121 | |
| A3KPF8 | 576 | Pentatricopeptide repeat- | no | no | 0.876 | 0.812 | 0.337 | 3e-74 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.853 | 0.723 | 0.293 | 9e-71 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.852 | 0.722 | 0.285 | 2e-70 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.797 | 0.677 | 0.295 | 9e-69 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.850 | 0.712 | 0.298 | 1e-68 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.827 | 0.686 | 0.297 | 3e-68 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.859 | 0.726 | 0.280 | 8e-67 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.850 | 0.733 | 0.298 | 9e-67 |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/522 (66%), Positives = 420/522 (80%), Gaps = 17/522 (3%)
Query: 25 RPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ 84
R H S ++TQ +K+ RS R+G + ESL+ +E+MV G PDV++CTKLIK FF
Sbjct: 77 RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 136
Query: 85 ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTY 144
R KAVRVMEILEK+G+PDVFAYNALI+GFCK N+I+ A +VLDR+RS+ FSPD VTY
Sbjct: 137 LRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 196
Query: 145 NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM-- 202
NIMIGSLCSRG ++ A KV +QLL DNC+PTVITYTILI+ATMLEG D+A+KL+DEM
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256
Query: 203 ---------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEE 247
GMCK+GMV +AF+ VR+LE +GC+PDVISYN+LLR LLN GKWEE
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEE 316
Query: 248 GEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS 307
GEKLMT+M S +PNVVTYSILI++LCRDGK E+A+++L+ KEKGLTPDAYSYDPLI+
Sbjct: 317 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376
Query: 308 AYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPP 367
A+C++GRLD+AIEFL+ MISDGCLPDIVNYNT+LA CKNG ADQALEIF KL +VGC P
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436
Query: 368 NVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLL 427
N SSYNTMFSALWSSGDKIRAL MI EM+S GI+PDEITYNS+ISCLCR+GMVDEA LL
Sbjct: 437 NSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELL 496
Query: 428 VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487
VDM S F P+V++YNI++LGFCK RI ++I VL +M GC+PNETTY +LIEGIG+
Sbjct: 497 VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFA 556
Query: 488 GWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529
G+RAEAMELAN LV + AIS +FKRL+RTFPLL+V + S
Sbjct: 557 GYRAEAMELANDLVRIDAISEYSFKRLHRTFPLLNVLQRSSQ 598
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/487 (42%), Positives = 317/487 (65%), Gaps = 21/487 (4%)
Query: 32 SFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKA 91
SF +++ + +++ R G+ +E F+E+MV +G PD++ CT LI+ F + K+ KA
Sbjct: 97 SFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKA 156
Query: 92 VRVMEILEKYGE-PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS 150
+++EILE G PDV YN +ISG+CKA +I A VLDR+ SPDVVTYN ++ S
Sbjct: 157 AKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRS 213
Query: 151 LCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM-------- 202
LC G ++ A +V D++L+ +C P VITYTILI+AT + AMKLLDEM
Sbjct: 214 LCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273
Query: 203 ---------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMT 253
G+CK+G + +A +F+ + S GCQP+VI++N++LR++ + G+W + EKL+
Sbjct: 274 VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLA 333
Query: 254 EMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDG 313
+M+ +G P+VVT++ILI+ LCR G A+D+L + G P++ SY+PL+ +CK+
Sbjct: 334 DMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393
Query: 314 RLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYN 373
++D AIE+L+ M+S GC PDIV YNT+L A CK+G + A+EI +LS GC P + +YN
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453
Query: 374 TMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST 433
T+ L +G +A+ ++ EM +K ++PD ITY+SL+ L R+G VDEA+ + E
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513
Query: 434 RFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEA 493
RP +++N I+LG CK+R+ + +I+ L M +GCKPNET+Y +LIEG+ Y G EA
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Query: 494 MELANAL 500
+EL N L
Sbjct: 574 LELLNEL 580
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Arabidopsis thaliana (taxid: 3702) |
| >sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 165/489 (33%), Positives = 260/489 (53%), Gaps = 21/489 (4%)
Query: 53 FDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGE-PDVFAYNA 111
+S +ES+V G KP+V T+L+ + + KA+RV+E++ G PD AY
Sbjct: 87 LSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTY 146
Query: 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171
L++ CK + A ++++++ G+ + VTYN ++ LC G + + + ++L++
Sbjct: 147 LVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKG 206
Query: 172 CKPTVITYTILIQATMLEGQTDKAMKLLDEM-----------------GMCKKGMVGQAF 214
P TY+ L++A E TD+A+KLLDE+ G CK+G A
Sbjct: 207 LAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIVKGGEPNLVSYNVLLTGFCKEGRTDDAM 266
Query: 215 QFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSL 274
R L ++G + +V+SYN+LLR L G+WEE L+ EM P+VVTY+ILI+SL
Sbjct: 267 ALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANSLLAEMDGGDRAPSVVTYNILINSL 326
Query: 275 CRDGKTEDAVDVLR--AAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP 332
G+TE A+ VL+ + A SY+P+I+ CK+G++DL ++ LD MI C P
Sbjct: 327 AFHGRTEQALQVLKEMSKGNHQFRVTATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKP 386
Query: 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMI 392
+ YN I + N +A I + LS+ Y ++ ++L G+ A ++
Sbjct: 387 NEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLL 446
Query: 393 SEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME-STRFRPTVISYNIIILGFCK 451
EM G +PD TY++LI LC +GM A+ +L ME S +PTV ++N +ILG CK
Sbjct: 447 YEMTRCGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLCK 506
Query: 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511
RR + ++EV M EK PNETTY +L+EGI + A E+ + L I ++
Sbjct: 507 IRRTDLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDELELAKEVLDELRLRKVIGQNAV 566
Query: 512 KRLNRTFPL 520
R+ F L
Sbjct: 567 DRIVMQFNL 575
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (685), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 139/474 (29%), Positives = 248/474 (52%), Gaps = 18/474 (3%)
Query: 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEI 97
+F KL+ + KFD + E M G ++ + LI F + + + A+ V+
Sbjct: 82 VEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAK 141
Query: 98 LEKYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM 156
+ K G EPD+ N+L++GFC N+I A ++ ++ G+ PD T+N +I L
Sbjct: 142 MMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNR 201
Query: 157 IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM-------------- 202
A + D+++ C+P ++TY I++ G D A+ LL +M
Sbjct: 202 ASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNT 261
Query: 203 ---GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259
+C V A ++++G +P+V++YN L+R L N G+W + +L+++MI R
Sbjct: 262 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 321
Query: 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAI 319
+ PNVVT+S LI + ++GK +A + ++ + PD ++Y LI+ +C RLD A
Sbjct: 322 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 381
Query: 320 EFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSAL 379
+ MIS C P++V YNT++ FCK D+ +E+F ++S G N +Y T+
Sbjct: 382 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441
Query: 380 WSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTV 439
+ + + A + +M+S G+ PD +TY+ L+ LC +G V+ A+ + ++ ++ P +
Sbjct: 442 FQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI 501
Query: 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEA 493
+YNI+I G CK ++ + ++ ++ KG KPN TY ++ G G + EA
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 135/473 (28%), Positives = 254/473 (53%), Gaps = 18/473 (3%)
Query: 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEIL 98
+F KL+ + KFD + E M G + + LI F + + A+ V+ +
Sbjct: 83 EFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKM 142
Query: 99 EKYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMI 157
K G EP++ ++L++G+C + +I A ++D++ G+ P+ VT+N +I L
Sbjct: 143 MKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKA 202
Query: 158 ESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM--------------- 202
A + D+++ C+P ++TY +++ G TD A LL++M
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTI 262
Query: 203 --GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL 260
G+CK + A + +E++G +P+V++Y+ L+ L N G+W + +L+++MI R +
Sbjct: 263 IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322
Query: 261 EPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIE 320
P+V T+S LI + ++GK +A + ++ + P +Y LI+ +C RLD A +
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 382
Query: 321 FLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALW 380
++M+S C PD+V YNT++ FCK ++ +E+F ++S G N +YN + L+
Sbjct: 383 MFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLF 442
Query: 381 SSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVI 440
+GD A + EM+S G+ P+ +TYN+L+ LC++G +++A+ + ++ ++ PT+
Sbjct: 443 QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 502
Query: 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEA 493
+YNI+I G CK ++ + ++ + KG KP+ Y +I G G + EA
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 242/447 (54%), Gaps = 21/447 (4%)
Query: 49 RAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVME--ILEKYGEPDV 106
R + +L + M+ G +PD+V + L+ + ++ ++AV +++ + +Y +P+
Sbjct: 127 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY-QPNT 185
Query: 107 FAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQ 166
+N LI G N+ A ++DR+ +RG PD+ TY ++ LC RG I+ A + +
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 245
Query: 167 LLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQ 226
+ + + V+ YT +I A +C V A ++++G +
Sbjct: 246 MEKGKIEADVVIYTTIIDA------------------LCNYKNVNDALNLFTEMDNKGIR 287
Query: 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDV 286
P+V++YN L+R L N G+W + +L+++MI R + PNVVT+S LI + ++GK +A +
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 347
Query: 287 LRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346
++ + PD ++Y LI+ +C RLD A + MIS C P++V YNT++ FCK
Sbjct: 348 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 407
Query: 347 NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEIT 406
++ +E+F ++S G N +YNT+ L+ +GD A + +M+S G+ PD IT
Sbjct: 408 AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIIT 467
Query: 407 YNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466
Y+ L+ LC+ G +++A+ + ++ ++ P + +YNI+I G CK ++ + ++ ++
Sbjct: 468 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 527
Query: 467 EKGCKPNETTYVLLIEGIGYGGWRAEA 493
KG KPN Y +I G G + EA
Sbjct: 528 LKGVKPNVIIYTTMISGFCRKGLKEEA 554
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/472 (29%), Positives = 246/472 (52%), Gaps = 18/472 (3%)
Query: 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILE 99
F +L + ++D L + M G ++ + +I F + RK A M +
Sbjct: 91 FSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII 150
Query: 100 KYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE 158
K G EP+ ++ LI+G C ++ A +++DR+ G PD++T N ++ LC G
Sbjct: 151 KLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEA 210
Query: 159 SAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM---------------- 202
A + D+++ C+P +TY ++ GQT AM+LL +M
Sbjct: 211 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270
Query: 203 -GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE 261
G+CK G + AF +E +G ++I+YN+L+ N G+W++G KL+ +MI R +
Sbjct: 271 DGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKIN 330
Query: 262 PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEF 321
PNVVT+S+LI S ++GK +A ++ + +G+ PD +Y LI +CK+ LD A +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQM 390
Query: 322 LDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS 381
+D M+S GC P+I +N ++ +CK D LE+F K+S G + +YNT+
Sbjct: 391 VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 450
Query: 382 SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVIS 441
G A + EM+S+ + P+ +TY L+ LC +G ++A+ + +E ++ +
Sbjct: 451 LGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 510
Query: 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEA 493
YNIII G C +++++ ++ ++ KG KP TY ++I G+ G +EA
Sbjct: 511 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 245/460 (53%), Gaps = 18/460 (3%)
Query: 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILE 99
F +L + +++ L + M + G + + +I F + RK + A M +
Sbjct: 91 FNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIM 150
Query: 100 KYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE 158
K G EPD +N L++G C ++ A +++DR+ G P ++T N ++ LC G +
Sbjct: 151 KLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVS 210
Query: 159 SAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM---------------- 202
A + D+++ +P +TY ++ GQT AM+LL +M
Sbjct: 211 DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270
Query: 203 -GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE 261
G+CK G + AF +E +G + D+I+YN L+ N G+W++G KL+ +MI R +
Sbjct: 271 DGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKIS 330
Query: 262 PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEF 321
PNVVT+S+LI S ++GK +A +L+ ++G+ P+ +Y+ LI +CK+ RL+ AI+
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390
Query: 322 LDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS 381
+D MIS GC PDI+ +N ++ +CK D LE+F ++S G N +YNT+
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450
Query: 382 SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVIS 441
SG A + EM+S+ + PD ++Y L+ LC +G +++A+ + +E ++ +
Sbjct: 451 SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI 510
Query: 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLI 481
Y III G C +++++ ++ ++ KG K + Y ++I
Sbjct: 511 YMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMI 550
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (651), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 134/477 (28%), Positives = 245/477 (51%), Gaps = 18/477 (3%)
Query: 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEI 97
+F KL+ + KF+ + E M G D+ + I F + + + A+ V+
Sbjct: 84 VEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAK 143
Query: 98 LEKYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM 156
+ K G EPD+ ++L++G+C + +I A ++D++ G+ PD T+ +I L
Sbjct: 144 MMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNK 203
Query: 157 IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM-------------- 202
A + DQ+++ C+P ++TY ++ G D A+ LL +M
Sbjct: 204 ASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNT 263
Query: 203 ---GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259
G+CK + A ++++G +PDV +Y+ L+ L N G+W + +L+++MI R
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323
Query: 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAI 319
+ PNVVT+S LI + ++GK +A + ++ + PD ++Y LI+ +C RLD A
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 383
Query: 320 EFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSAL 379
+ MIS C P++V Y+T++ FCK ++ +E+F ++S G N +Y T+
Sbjct: 384 HMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Query: 380 WSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTV 439
+ + D A + +M+S G+ P+ +TYN L+ LC++G + +A+ + ++ + P +
Sbjct: 444 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDI 503
Query: 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMEL 496
+YNI+I G CK ++ + E+ + KG PN Y +I G G + EA L
Sbjct: 504 YTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSL 560
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 141/472 (29%), Positives = 246/472 (52%), Gaps = 18/472 (3%)
Query: 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILE 99
F +L R ++D L F + M NG + D+ T +I + +++K A V+
Sbjct: 73 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 132
Query: 100 KYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE 158
K G EPD ++ L++GFC ++ A ++DR+ PD+VT + +I LC +G +
Sbjct: 133 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVS 192
Query: 159 SAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM---------------- 202
A + D+++ +P +TY ++ G + A+ L +M
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 252
Query: 203 -GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE 261
+CK G A +E +G + DV++Y+ L+ L N GKW++G K++ EMI R +
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312
Query: 262 PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEF 321
P+VVT+S LI ++GK +A ++ +G+ PD +Y+ LI +CK+ L A +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372
Query: 322 LDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS 381
D M+S GC PDIV Y+ ++ ++CK D + +F ++S G PN +YNT+
Sbjct: 373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432
Query: 382 SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVIS 441
SG A + EM+S+G+ P +TY L+ LC +G +++A+ + M+ +R +
Sbjct: 433 SGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI 492
Query: 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEA 493
YNIII G C +++++ + ++ +KG KP+ TY ++I G+ G +EA
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 534 | ||||||
| 255561943 | 584 | pentatricopeptide repeat-containing prot | 0.986 | 0.902 | 0.684 | 0.0 | |
| 147789724 | 592 | hypothetical protein VITISV_025967 [Viti | 0.996 | 0.898 | 0.652 | 0.0 | |
| 225453062 | 582 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.914 | 0.651 | 0.0 | |
| 449449675 | 581 | PREDICTED: pentatricopeptide repeat-cont | 0.966 | 0.888 | 0.659 | 0.0 | |
| 297833172 | 598 | pentatricopeptide repeat-containing prot | 0.945 | 0.844 | 0.666 | 0.0 | |
| 18397002 | 602 | pentatricopeptide repeat-containing prot | 0.945 | 0.838 | 0.666 | 0.0 | |
| 62320494 | 602 | hypothetical protein [Arabidopsis thalia | 0.945 | 0.838 | 0.664 | 0.0 | |
| 357441365 | 590 | Pentatricopeptide repeat-containing prot | 0.947 | 0.857 | 0.629 | 0.0 | |
| 224125710 | 487 | predicted protein [Populus trichocarpa] | 0.867 | 0.950 | 0.690 | 0.0 | |
| 356505993 | 570 | PREDICTED: pentatricopeptide repeat-cont | 0.968 | 0.907 | 0.6 | 0.0 |
| >gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/551 (68%), Positives = 456/551 (82%), Gaps = 24/551 (4%)
Query: 1 QSTVVSCINPKSNE--RVR----VSSSAETRPNTHLLSFDVKETQFMKLIKRSFRAGKFD 54
ST+VSCI P+ N+ +VR V SAETR TH+LSFD KE MKL+ RS RAGK++
Sbjct: 28 HSTIVSCIRPELNDANKVRNPQKVRVSAETR-QTHVLSFDFKEVHLMKLLNRSCRAGKYN 86
Query: 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114
ESLYF+E MV G PDV++CTKLIK FF R KA RVMEILE+YG+PDVFAYNALIS
Sbjct: 87 ESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYGKPDVFAYNALIS 146
Query: 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP 174
GF KANQ+E AN+VLDR++SRGF PDVVTYNIMIGS CSRG ++ A ++F++LL+DNC+P
Sbjct: 147 GFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEP 206
Query: 175 TVITYTILIQATMLEGQTDKAMKLLDEM-----------------GMCKKGMVGQAFQFV 217
TVITYTILI+AT+L+G D AMKLLDEM GMCK+ MV +AF+ +
Sbjct: 207 TVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELL 266
Query: 218 RSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRD 277
RSL SRGC+PD+I+YN+LLRTLL+ GKW EGEKL++EMIS G +PNVVT+SILI +LCRD
Sbjct: 267 RSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRD 326
Query: 278 GKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNY 337
GK E+AV++LR+ KEKGL PDAY YDPLI+ +C++GRLDLA EFL+YMISDGCLPDIVNY
Sbjct: 327 GKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNY 386
Query: 338 NTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS 397
NTI+A C+ G ADQALE+FEKL +VGCPPNVSSYNT+FSALWSSGD+ RAL MI ++L+
Sbjct: 387 NTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLN 446
Query: 398 KGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE 457
+GI+PDEITYNSLISCLCRDGMVDEA+ LLVDM+S R+RP V+SYNII+LG CK R N+
Sbjct: 447 QGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRAND 506
Query: 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517
+IEVLAAM EKGC+PNETTY+LLIEGIG+ G RAEAMELAN+L M+AIS D+F RLN+T
Sbjct: 507 AIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLHGMNAISEDSFNRLNKT 566
Query: 518 FPLLDVYKEIS 528
FPLLDVYK+++
Sbjct: 567 FPLLDVYKDLT 577
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/556 (65%), Positives = 438/556 (78%), Gaps = 24/556 (4%)
Query: 1 QSTVVSCINPKSNE------RVRVSSSAETRPNTHLLSFDVKETQFMKLIKRSFRAGKFD 54
+++V+C NP N+ +V SAE RP HL S+D +ET MKL+ RS +AGKF+
Sbjct: 37 HTSIVTCRNPNPNDGYNSRNSPKVGVSAEARP-AHLQSYDFRETHLMKLLNRSCKAGKFN 95
Query: 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114
ESLYF+E +V G PDV++CTKLIK FF + KA RVMEILE + EPDVFAYNA+IS
Sbjct: 96 ESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVIS 155
Query: 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP 174
GFCK NQIE A +VL+R+++RGF PD+VTYNIMIGSLC+R + A V DQLL DNC P
Sbjct: 156 GFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMP 215
Query: 175 TVITYTILIQATMLEGQTDKAMKLLDEM-----------------GMCKKGMVGQAFQFV 217
TVITYTILI+AT++EG ++AMKLL+EM GMCK+GMV +A + +
Sbjct: 216 TVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELI 275
Query: 218 RSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRD 277
SL S+GC+PDVISYN+LLR LN GKW+EGEKL+ EM SRG EPN VTYSILISSLCR
Sbjct: 276 TSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRF 335
Query: 278 GKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNY 337
G+ ++A+ VL+ EK LTPD YSYDPLISA CK+GRLDLAI +DYMIS+GCLPDIVNY
Sbjct: 336 GRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNY 395
Query: 338 NTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS 397
NTILAA CKNGNA+QALEIF KL +GCPPNVSSYNTM SALWS GD+ RALGM+ M+S
Sbjct: 396 NTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMIS 455
Query: 398 KGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE 457
KGI+PDEITYNSLISCLCRDG+V+EA+GLL DME + FRPTVISYNI++LG CK RRI++
Sbjct: 456 KGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDD 515
Query: 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517
+I + A M EKGC+PNETTY+LLIEGIG+ GWR EAMELAN+L S IS+D+FKRLN+T
Sbjct: 516 AIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVISQDSFKRLNKT 575
Query: 518 FPLLDVYKEISHLATK 533
FP+LDVYKE+S+ TK
Sbjct: 576 FPMLDVYKELSNSETK 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/556 (65%), Positives = 439/556 (78%), Gaps = 24/556 (4%)
Query: 1 QSTVVSCINPKSNERV------RVSSSAETRPNTHLLSFDVKETQFMKLIKRSFRAGKFD 54
+++V+C NP N+ +V SAE RP HL S+D +ET MKL+ RS +AGKF+
Sbjct: 27 HTSIVTCRNPNPNDGFNSRNAPKVGVSAEARP-AHLQSYDFRETHLMKLLNRSCKAGKFN 85
Query: 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114
ESLYF+E +V G PDV++CTKLIK FF + KA RVMEILE + EPDVFAYNA+IS
Sbjct: 86 ESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVIS 145
Query: 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP 174
GFCK N+IE A +VL+R+++RGF PD+VTYNIMIGSLC+R + A KV DQLL DNC P
Sbjct: 146 GFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMP 205
Query: 175 TVITYTILIQATMLEGQTDKAMKLLDEM-----------------GMCKKGMVGQAFQFV 217
TVITYTILI+AT++EG ++AMKLL+EM GMCK+GMV +A + +
Sbjct: 206 TVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELI 265
Query: 218 RSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRD 277
SL S+GC+PDVISYN+LLR LN GKW+EGEKL+ EM SRG EPN VTYSILISSLCR
Sbjct: 266 TSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRF 325
Query: 278 GKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNY 337
G+ ++A+ VL+ EK LTPD YSYDPLISA CK+GRLDLAI +DYMIS+GCLPDIVNY
Sbjct: 326 GRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNY 385
Query: 338 NTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS 397
NTILAA CKNGNA+QALEIF KL +GCPPNVSSYNTM SALWS GD+ RALGM+ M+S
Sbjct: 386 NTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMIS 445
Query: 398 KGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE 457
KG++PDEITYNSLISCLCRDG+V+EA+GLL DME + FRPTVISYNI++LG CK RRI++
Sbjct: 446 KGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDD 505
Query: 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517
+I + A M EKGC+PNETTY+LLIEGIG+ GWR EAMELAN+L S IS+D+FKRLN+T
Sbjct: 506 AIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVISQDSFKRLNKT 565
Query: 518 FPLLDVYKEISHLATK 533
FP+LDVYKE+S+ TK
Sbjct: 566 FPMLDVYKELSNSETK 581
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/534 (65%), Positives = 432/534 (80%), Gaps = 18/534 (3%)
Query: 18 VSSSAETRPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTK 77
V+SSAE R H + D ++ MKL+ RS RAGK +ESLYF+ES+V+ G KPDVV+CTK
Sbjct: 44 VTSSAEFR-QPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTK 102
Query: 78 LIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGF 137
LIK FF R KA+RVMEILE YG+PDV++YNA+ISGF KANQI+ AN+V DR+RSRGF
Sbjct: 103 LIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162
Query: 138 SPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMK 197
SPDVVTYNIMIGSLCSRG +E AF+V D+LL+D CKP+VITYTILI+AT+LEG+ ++A++
Sbjct: 163 SPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALE 222
Query: 198 LLDEM-----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLL 240
L DE+ G+CK+GM +A FVR L +RGC PDV+SYN+LLR+ L
Sbjct: 223 LFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFL 282
Query: 241 NMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAY 300
N +WE+GE+LM +M+ G EPNVVT+SILISS CR+G+ +AV+VL KEKGLTPD+Y
Sbjct: 283 NKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSY 342
Query: 301 SYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKL 360
SYDPLISA+CK+GRLDLAIE+L+ M+SDGCLPDIVNYNTILA CK G AD AL++FEKL
Sbjct: 343 SYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKL 402
Query: 361 SDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMV 420
+VGCPP V +YNTMFSALWS G+KI+AL MISEM+ KGI+PDEITYNSLISCLCRDG+V
Sbjct: 403 DEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLV 462
Query: 421 DEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLL 480
DEA+GLLVDME+TRF+PTVIS+NI++LG CK R+ E IE+L M EKGC PNET+YVLL
Sbjct: 463 DEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLL 522
Query: 481 IEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATKD 534
IEGI Y GWRAEAMELAN+L + IS D+ KRLN+TFP+LDVYK +S +K+
Sbjct: 523 IEGIAYAGWRAEAMELANSLYRLGVISGDSSKRLNKTFPMLDVYKGLSLSESKN 576
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/522 (66%), Positives = 422/522 (80%), Gaps = 17/522 (3%)
Query: 25 RPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ 84
R H S ++TQ +K+ RS R+G + ESL+ +E+MV G PDV++CTKLIK FF
Sbjct: 73 RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 132
Query: 85 ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTY 144
R KAVRVMEILEK+G+PDVFAYNALI+GFCK N+I+ A +VLDR+RS+ FSPD VTY
Sbjct: 133 LRNVPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 192
Query: 145 NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM-- 202
NIMIGSLCSRG ++ A KV DQLL DNC+PTVITYTILI+ATMLEG D+A+KLLDEM
Sbjct: 193 NIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS 252
Query: 203 ---------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEE 247
GMCK+GMV +AF+ +R+LE +GC+PDVISYN+LLR LLN GKWEE
Sbjct: 253 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEE 312
Query: 248 GEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS 307
GEKLMT+M S +PNVVTYSILI++LCRDGK E+A+++L+ KEKGLTPDAYSYDPLI+
Sbjct: 313 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 372
Query: 308 AYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPP 367
A+C++GRLD+AIEFL+ MISDGCLPDIVNYNT+LA CKNG ADQALEIF KL +VGC P
Sbjct: 373 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 432
Query: 368 NVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLL 427
N SSYNTMFSALWSSGDKIRAL MI EM+S GI+PDEITYNS+ISCLCR+GMVD+A LL
Sbjct: 433 NSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELL 492
Query: 428 VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487
VDM S F P+V++YNI++LGFCK RI ++I+VL +M GC+PNETTY +LIEGIG+
Sbjct: 493 VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFA 552
Query: 488 GWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529
G+RAEAMELAN LV ++AIS +FKRL+RTFPLL+V + S
Sbjct: 553 GYRAEAMELANDLVRINAISEYSFKRLHRTFPLLNVLQRSSQ 594
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g04760, chloroplastic; Flags: Precursor gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana] gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana] gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana] gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/522 (66%), Positives = 420/522 (80%), Gaps = 17/522 (3%)
Query: 25 RPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ 84
R H S ++TQ +K+ RS R+G + ESL+ +E+MV G PDV++CTKLIK FF
Sbjct: 77 RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 136
Query: 85 ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTY 144
R KAVRVMEILEK+G+PDVFAYNALI+GFCK N+I+ A +VLDR+RS+ FSPD VTY
Sbjct: 137 LRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 196
Query: 145 NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM-- 202
NIMIGSLCSRG ++ A KV +QLL DNC+PTVITYTILI+ATMLEG D+A+KL+DEM
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256
Query: 203 ---------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEE 247
GMCK+GMV +AF+ VR+LE +GC+PDVISYN+LLR LLN GKWEE
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEE 316
Query: 248 GEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS 307
GEKLMT+M S +PNVVTYSILI++LCRDGK E+A+++L+ KEKGLTPDAYSYDPLI+
Sbjct: 317 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376
Query: 308 AYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPP 367
A+C++GRLD+AIEFL+ MISDGCLPDIVNYNT+LA CKNG ADQALEIF KL +VGC P
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436
Query: 368 NVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLL 427
N SSYNTMFSALWSSGDKIRAL MI EM+S GI+PDEITYNS+ISCLCR+GMVDEA LL
Sbjct: 437 NSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELL 496
Query: 428 VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487
VDM S F P+V++YNI++LGFCK RI ++I VL +M GC+PNETTY +LIEGIG+
Sbjct: 497 VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFA 556
Query: 488 GWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529
G+RAEAMELAN LV + AIS +FKRL+RTFPLL+V + S
Sbjct: 557 GYRAEAMELANDLVRIDAISEYSFKRLHRTFPLLNVLQRSSQ 598
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/522 (66%), Positives = 419/522 (80%), Gaps = 17/522 (3%)
Query: 25 RPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ 84
R H S ++TQ +K+ RS R+G + ESL+ +E+MV G PDV++CTKLIK FF
Sbjct: 77 RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 136
Query: 85 ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTY 144
R KAVRVMEILEK+G+PDVFAYNALI+GFCK N+I+ A +VLDR+RS+ FSPD VTY
Sbjct: 137 LRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 196
Query: 145 NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM-- 202
NIMIGSLCSRG ++ A KV +QLL DNC+PTVITYTILI+ATMLEG D+A+KL+DEM
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256
Query: 203 ---------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEE 247
GMCK+GMV +AF+ VR+LE +G +PDVISYN+LLR LLN GKWEE
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEE 316
Query: 248 GEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS 307
GEKLMT+M S +PNVVTYSILI++LCRDGK E+A+++L+ KEKGLTPDAYSYDPLI+
Sbjct: 317 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376
Query: 308 AYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPP 367
A+C++GRLD+AIEFL+ MISDGCLPDIVNYNT+LA CKNG ADQALEIF KL +VGC P
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436
Query: 368 NVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLL 427
N SSYNTMFSALWSSGDKIRAL MI EM+S GI+PDEITYNS+ISCLCR+GMVDEA LL
Sbjct: 437 NSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELL 496
Query: 428 VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487
VDM S F P+V++YNI++LGFCK RI ++I VL +M GC+PNETTY +LIEGIG+
Sbjct: 497 VDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFA 556
Query: 488 GWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529
G+RAEAMELAN LV + AIS +FKRL+RTFPLL+V + S
Sbjct: 557 GYRAEAMELANDLVRIDAISEYSFKRLHRTFPLLNVLQRSSQ 598
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/524 (62%), Positives = 417/524 (79%), Gaps = 18/524 (3%)
Query: 23 ETRPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKF 82
ET+P H +D ++T FMK + RS ++ K+DESLYF++ MV G KPDV++CTKLIK F
Sbjct: 63 ETKPTKHDQDYDFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGF 122
Query: 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVV 142
F +K KA++VMEILEK+G+PDVFAYNA+ISGFCKA++++ A+KVLDR++ RGF PDVV
Sbjct: 123 FNMKKIEKAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVV 182
Query: 143 TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202
TYNI+IG+ C RG ++ A +V DQLL+DNCKPTVITYTILI+AT+ +G D+AMKLLDEM
Sbjct: 183 TYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEM 242
Query: 203 -----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKW 245
GMCK+GM+ +AF+F+ + GC V +YN+LLR LLN GKW
Sbjct: 243 LSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKW 302
Query: 246 EEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305
E GEKLM++M+ +G EPN +TYS LI++LCRDGK ++A +VL+ KEK L PD YSYDPL
Sbjct: 303 EYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPL 362
Query: 306 ISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365
ISA C++G++DLAIEFLD MIS G LPDI++YN+ILA+ CKNGNAD+AL IFEKL +VGC
Sbjct: 363 ISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGC 422
Query: 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVG 425
PPN SYNT+F ALWSSGDKIRALGMI EMLS GI+PDEITYNSLISCLCRDG+VD+A+
Sbjct: 423 PPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIE 482
Query: 426 LLVDM-ESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGI 484
LLVDM ES + +PTVISYN ++LG CK +RI ++IEVLAAM +GC PNETTY LLI+GI
Sbjct: 483 LLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGI 542
Query: 485 GYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEIS 528
G+ GWR +AMELAN LV+M AIS D+FKR + FP+ D +KE++
Sbjct: 543 GFAGWRYDAMELANLLVNMDAISEDSFKRFQKIFPVFDAHKELA 586
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa] gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/481 (69%), Positives = 400/481 (83%), Gaps = 18/481 (3%)
Query: 63 MVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122
MVA +PDV++CTKLIK FF R +KA RVM ILEK+G+PDVFAYNA+ISGFCKAN+I
Sbjct: 1 MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRI 60
Query: 123 ELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN-CKPTVITYTI 181
E A VLDR++ +GFSPDVVT+NIMIG+ C +G I+ A KVF++LL+DN CKPT+ITYTI
Sbjct: 61 ESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTI 120
Query: 182 LIQATMLEGQTDKAMKLLDEM-----------------GMCKKGMVGQAFQFVRSLESRG 224
LI+A +LEG D+A+KLLDEM G+CK+G V +AF+FVR+L SRG
Sbjct: 121 LIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRG 180
Query: 225 CQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV 284
C+PDVI+YN+LLR LLN GKW+EGEK M+E+ SRG EPNVVTYSILISSLCRDGK E++V
Sbjct: 181 CKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESV 240
Query: 285 DVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAF 344
++++ KEKGLTPDAY YDPLI+A+C++G+LD+AIEFLD MI DG LPDIVNYNTI+AA
Sbjct: 241 NLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAAL 300
Query: 345 CKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDE 404
CKNGN D A+EIF KL +VGCPPNVSSYNTM SALWSSGD+ RALGMIS+MLSKGI+PD
Sbjct: 301 CKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDV 360
Query: 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAA 464
ITYNSLISCLCRDGMVDEA+GLL DM S RF+P ++SY ++LG CK RI+++IEVLAA
Sbjct: 361 ITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAA 420
Query: 465 MFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVY 524
M E GC+PNETTY LLIEGIG+ G R +AMELAN+L M+AIS D+FKRLN+TFPLLDVY
Sbjct: 421 MIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYIMNAISEDSFKRLNKTFPLLDVY 480
Query: 525 K 525
K
Sbjct: 481 K 481
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/540 (60%), Positives = 420/540 (77%), Gaps = 23/540 (4%)
Query: 10 PKSNERVRVSS--SAETRPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANG 67
P NE ++ S+ ++P TH L F K+T +K + RS +AG F+ESLYF+ +V G
Sbjct: 30 PILNETTNINRTLSSVSKPQTHTLDF--KDTHLLKSLSRSCKAGNFNESLYFLRHLVNKG 87
Query: 68 CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANK 127
KPDVV+CTKLI F + +KA++VM ILE +G PD+ AYNA+I+GFC+AN+I+ A +
Sbjct: 88 HKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQ 147
Query: 128 VLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATM 187
VLDR++++GFSPD+VTYNI+IGSLCSRGM++SA + +QLL++NCKPTV+TYTILI+AT+
Sbjct: 148 VLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATL 207
Query: 188 LEGQTDKAMKLLDEM-----------------GMCKKGMVGQAFQFVRSLESRGCQPDVI 230
L+G D+AMKLLDEM GMC++G V +AFQ + S+ S+G PDVI
Sbjct: 208 LQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVI 267
Query: 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAA 290
+YN+LLR LLN GKWE G +LM++M++RG E NVVTYS+LISS+CRDGK E+ V +L+
Sbjct: 268 TYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDM 327
Query: 291 KEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA 350
K+KGL PD Y YDPLI+A CK+GR+DLAIE LD MISDGC+PDIVNYNTILA CK A
Sbjct: 328 KKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRA 387
Query: 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSL 410
D+AL IFEKL +VGC PN SSYN+MFSALWS+G K+RALGMI EML KG++PD ITYNSL
Sbjct: 388 DEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSL 447
Query: 411 ISCLCRDGMVDEAVGLLVD--MESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468
ISCLCRDGMVDEA+ LLVD MES+ +P+V+SYNI++LG CK R++++IEVLAAM +K
Sbjct: 448 ISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDK 507
Query: 469 GCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEIS 528
GC+PNETTY LIEGIG+GG +A +LA LV+M AIS +F+RL +TF LDVY++++
Sbjct: 508 GCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNMDAISEHSFERLYKTFCKLDVYRQLN 567
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 534 | ||||||
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.610 | 0.541 | 0.717 | 1.2e-188 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.902 | 0.806 | 0.366 | 4.5e-91 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.602 | 0.511 | 0.299 | 9.8e-70 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.543 | 0.468 | 0.334 | 2.9e-68 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.606 | 0.503 | 0.311 | 4.2e-67 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.544 | 0.456 | 0.329 | 5.4e-67 | |
| TAIR|locus:2025580 | 559 | AT1G08610 [Arabidopsis thalian | 0.556 | 0.531 | 0.343 | 9.8e-66 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.578 | 0.535 | 0.299 | 6.8e-65 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.629 | 0.541 | 0.300 | 2.9e-64 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.548 | 0.477 | 0.300 | 3.7e-64 |
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1257 (447.5 bits), Expect = 1.2e-188, Sum P(2) = 1.2e-188
Identities = 234/326 (71%), Positives = 279/326 (85%)
Query: 203 GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262
GMCK+GMV +AF+ VR+LE +GC+PDVISYN+LLR LLN GKWEEGEKLMT+M S +P
Sbjct: 272 GMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDP 331
Query: 263 NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFL 322
NVVTYSILI++LCRDGK E+A+++L+ KEKGLTPDAYSYDPLI+A+C++GRLD+AIEFL
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 391
Query: 323 DYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS 382
+ MISDGCLPDIVNYNT+LA CKNG ADQALEIF KL +VGC PN SSYNTMFSALWSS
Sbjct: 392 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSS 451
Query: 383 GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISY 442
GDKIRAL MI EM+S GI+PDEITYNS+ISCLCR+GMVDEA LLVDM S F P+V++Y
Sbjct: 452 GDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTY 511
Query: 443 NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS 502
NI++LGFCK RI ++I VL +M GC+PNETTY +LIEGIG+ G+RAEAMELAN LV
Sbjct: 512 NIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 571
Query: 503 MHAISRDTFKRLNRTFPLLDVYKEIS 528
+ AIS +FKRL+RTFPLL+V + S
Sbjct: 572 IDAISEYSFKRLHRTFPLLNVLQRSS 597
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 183/499 (36%), Positives = 301/499 (60%)
Query: 32 SFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKA 91
SF +++ + +++ R G+ +E F+E+MV +G PD++ CT LI+ F + K+ KA
Sbjct: 97 SFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKA 156
Query: 92 VRVMEILEKYGE-PDVFAYNALISGFCKANQIELANKVLDR-------------LRSRGF 137
+++EILE G PDV YN +ISG+CKA +I A VLDR LRS
Sbjct: 157 AKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCD 216
Query: 138 SPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE-GQT-DKA 195
S + ++ + R + L+ C+ + + + + + M + G T D
Sbjct: 217 SGKLKQAMEVLDRMLQRDCYPDVI-TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVV 275
Query: 196 MKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEM 255
+ G+CK+G + +A +F+ + S GCQP+VI++N++LR++ + G+W + EKL+ +M
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM 335
Query: 256 ISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRL 315
+ +G P+VVT++ILI+ LCR G A+D+L + G P++ SY+PL+ +CK+ ++
Sbjct: 336 LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKM 395
Query: 316 DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTM 375
D AIE+L+ M+S GC PDIV YNT+L A CK+G + A+EI +LS GC P + +YNT+
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTV 455
Query: 376 FSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRF 435
L +G +A+ ++ EM +K ++PD ITY+SL+ L R+G VDEA+ + E
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGI 515
Query: 436 RPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAME 495
RP +++N I+LG CK+R+ + +I+ L M +GCKPNET+Y +LIEG+ Y G EA+E
Sbjct: 516 RPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575
Query: 496 LANALVSMHAISRDTFKRL 514
L N L + + + + +++
Sbjct: 576 LLNELCNKGLMKKSSAEQV 594
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 97/324 (29%), Positives = 179/324 (55%)
Query: 172 CKPTVITYTILIQATMLEGQTDKAMKLLDEM--GMCKKGMVGQAFQFVRSLESRGCQPDV 229
CK I + + M +G+ + + + + + +C V A ++++G +P+V
Sbjct: 232 CKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 291
Query: 230 ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRA 289
++YN L+R L N G+W + +L+++MI R + PNVVT+S LI + ++GK +A +
Sbjct: 292 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 351
Query: 290 AKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGN 349
++ + PD ++Y LI+ +C RLD A + MIS C P++V YNT++ FCK
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411
Query: 350 ADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNS 409
D+ +E+F ++S G N +Y T+ + + + A + +M+S G+ PD +TY+
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471
Query: 410 LISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG 469
L+ LC +G V+ A+ + ++ ++ P + +YNI+I G CK ++ + ++ ++ KG
Sbjct: 472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531
Query: 470 CKPNETTYVLLIEGIGYGGWRAEA 493
KPN TY ++ G G + EA
Sbjct: 532 VKPNVVTYTTMMSGFCRKGLKEEA 555
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 97/290 (33%), Positives = 165/290 (56%)
Query: 204 MCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN 263
+CK G A +E +G + DV++Y+ L+ L N GKW++G K++ EMI R + P+
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
Query: 264 VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLD 323
VVT+S LI ++GK +A ++ +G+ PD +Y+ LI +CK+ L A + D
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 374
Query: 324 YMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG 383
M+S GC PDIV Y+ ++ ++CK D + +F ++S G PN +YNT+ SG
Sbjct: 375 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSG 434
Query: 384 DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYN 443
A + EM+S+G+ P +TY L+ LC +G +++A+ + M+ +R + YN
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN 494
Query: 444 IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEA 493
III G C +++++ + ++ +KG KP+ TY ++I G+ G +EA
Sbjct: 495 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 104/334 (31%), Positives = 188/334 (56%)
Query: 156 MIESAFK----VFDQLLRDNCKP--TVITYTIL--IQATMLEGQTDKAMKLLDEMGMCKK 207
M+E+ F+ + +L CK T + +L ++ ++ K ++D G+CK
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID--GLCKD 276
Query: 208 GMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY 267
G + AF +E +G + D+I+YN L+ N G+W++G KL+ +MI R + PNVVT+
Sbjct: 277 GSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTF 336
Query: 268 SILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMIS 327
S+LI S ++GK +A +L+ ++G+ P+ +Y+ LI +CK+ RL+ AI+ +D MIS
Sbjct: 337 SVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS 396
Query: 328 DGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIR 387
GC PDI+ +N ++ +CK D LE+F ++S G N +YNT+ SG
Sbjct: 397 KGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEV 456
Query: 388 ALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIIL 447
A + EM+S+ + PD ++Y L+ LC +G +++A+ + +E ++ + Y III
Sbjct: 457 AKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIH 516
Query: 448 GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLI 481
G C +++++ ++ ++ KG K + Y ++I
Sbjct: 517 GMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMI 550
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 96/291 (32%), Positives = 166/291 (57%)
Query: 203 GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262
G+CK G + AF +E +G ++I+YN+L+ N G+W++G KL+ +MI R + P
Sbjct: 272 GLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINP 331
Query: 263 NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFL 322
NVVT+S+LI S ++GK +A ++ + +G+ PD +Y LI +CK+ LD A + +
Sbjct: 332 NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 391
Query: 323 DYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS 382
D M+S GC P+I +N ++ +CK D LE+F K+S G + +YNT+
Sbjct: 392 DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 451
Query: 383 GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISY 442
G A + EM+S+ + P+ +TY L+ LC +G ++A+ + +E ++ + Y
Sbjct: 452 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 511
Query: 443 NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEA 493
NIII G C +++++ ++ ++ KG KP TY ++I G+ G +EA
Sbjct: 512 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA 562
|
|
| TAIR|locus:2025580 AT1G08610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 102/297 (34%), Positives = 159/297 (53%)
Query: 204 MCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN 263
+C+ +A + + + GC PD+++YN L+ G EE ++ ++S GLE N
Sbjct: 254 VCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELN 313
Query: 264 VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLD 323
VTY+ L+ SLC ++ ++L + P +Y+ LI+ CK L AI+F
Sbjct: 314 TVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFY 373
Query: 324 YMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG 383
M+ CLPDIV YNT+L A K G D A+E+ L + CPP + +YN++ L G
Sbjct: 374 QMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKG 433
Query: 384 DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYN 443
+AL + +ML GI PD+IT SLI CR +V+EA +L + + +Y
Sbjct: 434 LMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYR 493
Query: 444 IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500
++I G CK + I +IEV+ M GCKP+ET Y +++G+ G +EA++L L
Sbjct: 494 LVIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYTAIVKGVEEMGMGSEAVQLQKKL 550
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 93/311 (29%), Positives = 174/311 (55%)
Query: 183 IQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNM 242
++A +E ++D + CK A +E++G +P+VI+Y+ L+ L N
Sbjct: 251 MEAAKIEANVVIYSTVIDSL--CKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNY 308
Query: 243 GKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSY 302
+W + +L+++MI R + PNVVT++ LI + ++GK +A + ++ + PD ++Y
Sbjct: 309 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 368
Query: 303 DPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSD 362
LI+ +C RLD A + MIS C P++V YNT++ FCK D+ +E+F ++S
Sbjct: 369 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQ 428
Query: 363 VGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDE 422
G N +Y T+ + + D A + +M+S G+ P+ +TYN+L+ LC++G +++
Sbjct: 429 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 488
Query: 423 AVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIE 482
A+ + ++ ++ PT+ +YNI+I G CK ++ + ++ ++ KG KP+ Y +I
Sbjct: 489 AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMIS 548
Query: 483 GIGYGGWRAEA 493
G G + EA
Sbjct: 549 GFCRKGLKEEA 559
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 104/346 (30%), Positives = 188/346 (54%)
Query: 156 MIESAFK----VFDQLLRDNCKP--TVITYTIL--IQATMLEGQTDKAMKLLDEMGMCKK 207
M+E+ F+ + +L+ CK T + +L ++ ++ K ++D G+CK
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIID--GLCKD 260
Query: 208 GMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY 267
G + AF +E +G + D+I Y L+R G+W++G KL+ +MI R + P+VV +
Sbjct: 261 GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF 320
Query: 268 SILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMIS 327
S LI ++GK +A ++ + ++G++PD +Y LI +CK+ +LD A LD M+S
Sbjct: 321 SALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380
Query: 328 DGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIR 387
GC P+I +N ++ +CK D LE+F K+S G + +YNT+ G
Sbjct: 381 KGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEV 440
Query: 388 ALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIIL 447
A + EM+S+ + PD ++Y L+ LC +G ++A+ + +E ++ + YNIII
Sbjct: 441 AKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIH 500
Query: 448 GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEA 493
G C +++++ ++ ++ KG KP+ TY ++I G+ G +EA
Sbjct: 501 GMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEA 546
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 88/293 (30%), Positives = 164/293 (55%)
Query: 204 MCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN 263
+CK V A ++++G +PDV +Y+ L+ L N G+W + +L+++M+ R + PN
Sbjct: 250 LCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPN 309
Query: 264 VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLD 323
VVT++ LI + ++GK +A + ++ + P+ +Y+ LI+ +C RLD A +
Sbjct: 310 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT 369
Query: 324 YMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG 383
M+S CLPD+V YNT++ FCK +E+F +S G N +Y T+ + +
Sbjct: 370 LMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQAS 429
Query: 384 DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYN 443
D A + +M+S G+ P+ +TYN+L+ LC++G +++A+ + ++ ++ P + +YN
Sbjct: 430 DCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYN 489
Query: 444 IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMEL 496
I+ G CK ++ + ++ ++ KG KP+ Y +I G G + EA L
Sbjct: 490 IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SR00 | PP213_ARATH | No assigned EC number | 0.6666 | 0.9456 | 0.8388 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 534 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-34 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-27 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 2e-34
Identities = 96/368 (26%), Positives = 167/368 (45%), Gaps = 26/368 (7%)
Query: 91 AVRVMEILEKYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG 149
A+RV+ ++++ G + D Y LIS K+ +++ +V + + G +V T+ +I
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 150 SLCSR-GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKG 208
C+R G + AF + + N KP + + LI A G D+A +L EM
Sbjct: 516 G-CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA---- 570
Query: 209 MVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWE---EGEKLMTEMISRGLEPNVV 265
E+ PD I+ L++ N G+ + E +++ E +G P V
Sbjct: 571 ------------ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEV- 616
Query: 266 TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYM 325
Y+I ++S + G + A+ + K+KG+ PD + L+ G LD A E L
Sbjct: 617 -YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675
Query: 326 ISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDK 385
G V+Y++++ A N +ALE++E + + P VS+ N + +AL
Sbjct: 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735
Query: 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445
+AL ++SEM G+ P+ ITY+ L+ R D + LL + +P ++ I
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
Query: 446 ILGFCKTR 453
G C R
Sbjct: 796 T-GLCLRR 802
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-30
Identities = 106/448 (23%), Positives = 191/448 (42%), Gaps = 77/448 (17%)
Query: 46 RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLI-KKFFQERKSNKAV----RVMEILEK 100
R R G+ + + +E M K ++ K+ KFF+ K +AV R +++
Sbjct: 379 RLLRDGRIKDCIDLLEDME----KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR- 433
Query: 101 YGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESA 160
P + +N L+S + I+ A +VL ++ G D Y +I + G +++
Sbjct: 434 --NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 161 FKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220
F+VF +++ + V T+ LI G + G V +AF
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALID------------------GCARAGQVAKAFG----- 528
Query: 221 ESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKT 280
+Y + M S+ ++P+ V ++ LIS+ + G
Sbjct: 529 ----------AYGI--------------------MRSKNVKPDRVVFNALISACGQSGAV 558
Query: 281 EDAVDVLR--AAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYN 338
+ A DVL A+ + PD + L+ A G++D A E MI + +
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPEVY 617
Query: 339 TILAAFC-KNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS----SGDKIRALGMIS 393
TI C + G+ D AL I++ + G P+ FSAL +GD +A ++
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----EVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 394 EMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453
+ +GI+ ++Y+SL+ +A+ L D++S + RPTV + N +I C+
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733
Query: 454 RINESIEVLAAMFEKGCKPNETTYVLLI 481
++ +++EVL+ M G PN TY +L+
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-27
Identities = 106/481 (22%), Positives = 207/481 (43%), Gaps = 66/481 (13%)
Query: 49 RAGKFDESLYFIESMVANGCKPDVVM--CTKLIKKFFQERKSNKAVRVMEILEKYG-EPD 105
+AG FDE+L M+ G +PDV C + + V + ++G E D
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV--RFGFELD 221
Query: 106 VFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFD 165
V NALI+ + K + A V DR+ R D +++N MI G ++F
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFF 277
Query: 166 QLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGC 225
+ + P ++T T +I A +LL + + ++ M G + G
Sbjct: 278 TMRELSVDPDLMTITSVISAC----------ELLGDERLGRE-MHGYVVK-------TGF 319
Query: 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVD 285
DV N L++ L++G W E EK+ + M ++ + V+++ +IS ++G + A++
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALE 375
Query: 286 VLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFC 345
++ ++PD + ++SA G LD+ ++ + G + +V N ++ +
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435
Query: 346 KNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEI 405
K D+ALE+F + + +V S+ ++ + L + AL +ML ++P+ +
Sbjct: 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSV 490
Query: 406 TYNSLISCLCRDG-----------MVDEAVGL-------LVDM--ESTRFRPT------- 438
T + +S R G ++ +G L+D+ R
Sbjct: 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550
Query: 439 ---VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAME 495
V+S+NI++ G+ + + ++E+ M E G P+E T++ L+ G + +E
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 496 L 496
Sbjct: 611 Y 611
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 4e-22
Identities = 124/540 (22%), Positives = 221/540 (40%), Gaps = 61/540 (11%)
Query: 2 STVVSCINPK-----SNERVRVSSSAETRPNTHLLSFDVKE--TQFMKLIKRSFRAGKFD 54
S+V + P+ R+ VS S + R + + +Q KL+ G+
Sbjct: 49 SSVEQGLKPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVA----CGRHR 104
Query: 55 ESLYFIESMVANGC-KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNAL 112
E+L E + A L++ + V +E G EPD + N +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC 172
+ K + A ++ D + R ++ ++ +IG L G AF +F ++ D
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 173 KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVR-----------SLE 221
T+ ++++A+ G +L + K G+VG FV +E
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQL--HCCVLKTGVVGD--TFVSCALIDMYSKCGDIE 276
Query: 222 SRGC------QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC 275
C + +++N +L G EE L EM G+ + T+SI+I
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 276 RDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP--D 333
R E A G D + L+ Y K GR++ A D M P +
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PRKN 390
Query: 334 IVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMIS 393
++++N ++A + +G +A+E+FE++ G PN ++ + SA SG + +
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 394 EML-SKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT 452
M + I+P + Y +I L R+G++DEA ++ F+PTV + +L C
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWA-ALLTAC-- 504
Query: 453 RRINESIEVLAAMFEK--GCKPNE-TTYVLLIEGIGYGGWRAEAMELANAL----VSMHA 505
RI++++E+ EK G P + YV+L+ G +AEA ++ L +SMH
Sbjct: 505 -RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 3e-19
Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 2/239 (0%)
Query: 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAI 319
P + T+++L+S + A+ VLR +E GL D Y LIS K G++D
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 320 EFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSAL 379
E M++ G ++ + ++ + G +A + + P+ +N + SA
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 380 WSSGDKIRALGMISEML--SKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRP 437
SG RA +++EM + I+PD IT +L+ G VD A + + +
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMEL 496
T Y I + + + ++ + M +KG KP+E + L++ G+ G +A E+
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 55/261 (21%), Positives = 105/261 (40%), Gaps = 36/261 (13%)
Query: 247 EGEKLMTEMISRGLEP--NVVTYSILISSLCRDGKTEDAVDVL----------------- 287
E+ + G+ Y + L RDG+ +D +D+L
Sbjct: 351 VEEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHA 410
Query: 288 ---RAAKEKGLTPDAY------------SYDPLISAYCKDGRLDLAIEFLDYMISDGCLP 332
+A K++ +A+ +++ L+S +D A+ L + G
Sbjct: 411 KFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA 470
Query: 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMI 392
D Y T+++ K+G D E+F ++ + G NV ++ + +G +A G
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 393 SEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM--ESTRFRPTVISYNIIILGFC 450
M SK ++PD + +N+LIS + G VD A +L +M E+ P I+ ++
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 451 KTRRINESIEVLAAMFEKGCK 471
+++ + EV + E K
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIK 611
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.1 bits (186), Expect = 3e-17
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 104 PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLC 152
PDV YN LI G+CK ++E A K+ + ++ RG P+V TY+I+I LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 1e-16
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR 276
PDV++YN L+ GK EE KL EM RG++PNV TYSILI LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 3e-16
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 139 PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQA 185
PDVVTYN +I C +G +E A K+F+++ + KP V TY+ILI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 89/398 (22%), Positives = 166/398 (41%), Gaps = 49/398 (12%)
Query: 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIK--KFFQERKSNKAVRVMEILEK 100
+I F G+ E L +M PD++ T +I + + + + + +
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318
Query: 101 YGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESA 160
+ DV N+LI + A KV R+ ++ D V++ MI G+ + A
Sbjct: 319 FA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKA 373
Query: 161 FKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220
+ + + +DN P IT ++ A G D +KL E+ +KG+
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL-HELAE-RKGL----------- 420
Query: 221 ESRGCQPDVISYNMLLRTLLNM-GKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGK 279
ISY ++ L+ M K + +K + E+ E +V++++ +I+ L + +
Sbjct: 421 ---------ISYVVVANALIEMYSKCKCIDKAL-EVFHNIPEKDVISWTSIIAGLRLNNR 470
Query: 280 TEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMI-----SDGCLPDI 334
+A+ R L P++ + +SA + G L E +++ DG LP
Sbjct: 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP-- 527
Query: 335 VNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISE 394
N +L + + G + A F +V S+N + + + G A+ + +
Sbjct: 528 ---NALLDLYVRCGRMNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 395 MLSKGIEPDEITYNSLISCLC-RDGMVDEAVGLLVDME 431
M+ G+ PDE+T+ SL+ C C R GMV + + ME
Sbjct: 580 MVESGVNPDEVTFISLL-CACSRSGMVTQGLEYFHSME 616
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 2e-14
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK 451
PD +TYN+LI C+ G V+EA+ L +M+ +P V +Y+I+I G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 6e-14
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 332 PDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSAL 379
PD+V YNT++ +CK G ++AL++F ++ G PNV +Y+ + L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 8e-14
Identities = 87/419 (20%), Positives = 173/419 (41%), Gaps = 31/419 (7%)
Query: 51 GKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEI-LEKYGEPDVFAY 109
G+ +++L +ESM D L + +R + RV L + V
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLR 169
NA++S F + ++ A V ++ R D+ ++N+++G G + A ++ ++L
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 170 DNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV 229
+P V T+ +++ G D A + + +F G + DV
Sbjct: 181 AGVRPDVYTFPCVLRTC--GGIPDLARG---------REVHAHVVRF-------GFELDV 222
Query: 230 ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRA 289
N L+ + G + M R + ++++ +IS +G+ + +++
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFT 278
Query: 290 AKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGN 349
+E + PD + +ISA G L E Y++ G D+ N+++ + G+
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 350 ADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNS 409
+A ++F ++ + S+ M S +G +AL + M + PDEIT S
Sbjct: 339 WGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 410 LISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468
++S G +D V L E V+ N +I + K + I++++EV + EK
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 1e-13
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 262 PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311
P+VVTY+ LI C+ GK E+A+ + K++G+ P+ Y+Y LI CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 85/446 (19%), Positives = 167/446 (37%), Gaps = 76/446 (17%)
Query: 67 GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFA--YNALISGFCKANQIEL 124
K V +C++ I+K + +A+ + EILE + A Y+AL+ I
Sbjct: 83 IRKSGVSLCSQ-IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRC 141
Query: 125 ANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQ 184
V + S GF PD N ++ GM+
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI-------------------------- 175
Query: 185 ATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD--VISYNMLLRTLLNM 242
A +L DEM P+ + S+ ++ L++
Sbjct: 176 ---------DARRLFDEM------------------------PERNLASWGTIIGGLVDA 202
Query: 243 GKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSY 302
G + E L EM G + T+ +++ + G + + G+ D +
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 303 DPLISAYCKDGRLDLAIEFLDYMISDGCLPD--IVNYNTILAAFCKNGNADQALEIFEKL 360
LI Y K G ++ A D +P+ V +N++LA + +G +++AL ++ ++
Sbjct: 263 CALIDMYSKCGDIEDARCVFD------GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316
Query: 361 SDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMV 420
D G + +++ M A + ++ G D + +L+ + G +
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376
Query: 421 DEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLL 480
++A + M R +IS+N +I G+ R +++E+ M +G PN T++ +
Sbjct: 377 EDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 481 IEGIGYGGWRAEAMELANALVSMHAI 506
+ Y G + E+ ++ H I
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRI 458
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 297 PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346
PD +Y+ LI YCK G+++ A++ + M G P++ Y+ ++ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 58.9 bits (144), Expect = 1e-11
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 398 KGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME 431
KG++PD +TYN+LI LCR G VDEAV LL +ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 437 PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEG 483
P V++YN +I G+CK ++ E++++ M ++G KPN TY +LI+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 6e-10
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 258 RGLEPNVVTYSILISSLCRDGKTEDAVDVLR 288
+GL+P+VVTY+ LI LCR G+ ++AV++L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 9e-10
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 18/66 (27%)
Query: 174 PTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYN 233
P V+TY LI +G+ ++A+KL +EM + RG +P+V +Y+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM------------------KKRGIKPNVYTYS 42
Query: 234 MLLRTL 239
+L+ L
Sbjct: 43 ILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (128), Expect = 1e-09
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 135 RGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQ 166
+G PDVVTYN +I LC G ++ A ++ D+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-09
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISGFCK 118
PDVV LI + ++ K +A+++ ++K G +P+V+ Y+ LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 78/410 (19%), Positives = 142/410 (34%), Gaps = 104/410 (25%)
Query: 203 GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262
+C G + QA + + S++ D +Y L R EEG ++ + +S
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 263 NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFL 322
V + ++S R G+ A V E+ D +S++ L+ Y K G D A+
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLY 175
Query: 323 DYMISDGCLPDIVNY-----------------------------------NTILAAFCKN 347
M+ G PD+ + N ++ + K
Sbjct: 176 HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235
Query: 348 GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEIT- 406
G+ A +F+++ C S+N M S + +G+ + L + M ++PD +T
Sbjct: 236 GDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 407 ----------------------------------YNSLISCLCRDGMVDEAVGLLVDMES 432
NSLI G EA + ME
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME- 350
Query: 433 TRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAE 492
+S+ +I G+ K ++++E A M + P+E T ++ G
Sbjct: 351 ---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407
Query: 493 AMEL---------------ANALVSMHAISRDTFKRLNRTFPLLDVYKEI 527
++L ANAL+ M++ K +++ L+V+ I
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKC----KCIDKA---LEVFHNI 450
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 1e-08
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 293 KGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYM 325
KGL PD +Y+ LI C+ GR+D A+E LD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 57/228 (25%)
Query: 105 DVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVF 164
D F NAL+ + + ++ A ++ S DVV++NI++ + G A ++F
Sbjct: 523 DGFLPNALLDLYVRCGRMNYA---WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELF 577
Query: 165 DQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKK-GMVGQAFQFVRSLESR 223
++++ P +T+ L+ A C + GMV Q ++ S+E +
Sbjct: 578 NRMVESGVNPDEVTFISLLCA-------------------CSRSGMVTQGLEYFHSMEEK 618
Query: 224 -GCQPDVISYNMLLRTLLNMGKWEEGEKLMTEM-----------------ISRG------ 259
P++ Y ++ L GK E + +M I R
Sbjct: 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678
Query: 260 -------LEPNVVTYSILISSLCRD-GKTEDAVDVLRAAKEKGLTPDA 299
L+PN V Y IL+ +L D GK ++ V + +E GLT D
Sbjct: 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (115), Expect = 1e-07
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 328 DGCLPDIVNYNTILAAFCKNGNADQALEIFEK 359
G PD+V YNT++ C+ G D+A+E+ ++
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 5e-07
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 170 DNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202
KP V+TY LI G+ D+A++LLDEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 142 VTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTV 176
VTYN +I LC G +E A ++F ++ +P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (116), Expect = 2e-06
Identities = 48/276 (17%), Positives = 96/276 (34%), Gaps = 20/276 (7%)
Query: 87 KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNI 146
A+ + + + E L E + + L S +
Sbjct: 5 LLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLL 64
Query: 147 MIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCK 206
+ +L G +E A ++ ++ L P L +A + G +A+ +E
Sbjct: 65 LALALLKLGRLEEALELLEKALELELLPN------LAEALLNLGLLLEALGKYEE----- 113
Query: 207 KGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMI--SRGLEPNV 264
A + + + PD+ + L L +G +EE +L + + L
Sbjct: 114 ------ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELA 167
Query: 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDY 324
L + L G+ E+A+++L A + DA + L Y K G+ + A+E+ +
Sbjct: 168 EALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227
Query: 325 MISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKL 360
+ + + + G ++ALE EK
Sbjct: 228 ALEL-DPDNAEALYNLALLLLELGRYEEALEALEKA 262
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTV 439
+TYN+LI LC+ G V+EA+ L +M+ P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 107 FAYNALISGFCKANQIELANKVLDRLRSRGFSPDV 141
YN LI G CKA ++E A ++ ++ RG PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 9e-06
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 300 YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI 334
+Y+ LI CK GR++ A+E M G PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 103 EPDVFAYNALISGFCKANQIELANKVLDRLR 133
+PDV YN LI G C+A +++ A ++LD +
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (108), Expect = 2e-05
Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 11/234 (4%)
Query: 266 TYSILISSLCRDGKTEDAVDVLRAAKEKGLTP-DAYSYDPLISAYCKDGRLDLAIEFLDY 324
+L +L + G+ E+A+++L A E L P A + L G+ + A+E L+
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 325 MISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKL--SDVGCPPNVSSYNTMFSALWSS 382
++ PD+ L A + G+ ++ALE++EK D + + + L +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 383 GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISY 442
G AL ++ + L + D +L + G +EA+ + +
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY-EKALELDPDNAEAL 239
Query: 443 NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMEL 496
+ L + R E++E EK + + L G+ AEA+EL
Sbjct: 240 YNLALLLLELGRYEEALE----ALEKALELDP---DLYNLGLALLLLLAEALEL 286
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 230 ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV 264
++YN L+ L G+ EE +L EM RG+EP+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 405 ITYNSLISCLCRDGMVDEAVGLLVDMES 432
+TYNSLIS C+ G ++EA+ L +M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDA 299
VTY+ LI LC+ G+ E+A+++ + KE+G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 142 VTYNIMIGSLCSRGMIESAFKVFDQLLRDNC 172
VTYN +I C G +E A ++F ++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPNV 369
YNT++ CK G ++ALE+F+++ + G P+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 435 FRPTVISYNIIILGFCKTRRINESIEVLAAM 465
+P V++YN +I G C+ R++E++E+L M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNE 474
++YN +I G CK R+ E++E+ M E+G +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGL 295
VTY+ LIS C+ GK E+A+++ + KEKG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 141 VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP 174
+ TYN ++ +L G + A V +++ KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 107 FAYNALISGFCKANQIELANKVLDRLRSRGF 137
YN+LISG+CKA ++E A ++ ++ +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 300 YSYDPLISAYCKDGRLDLAIEFLDYMISDGC 330
+Y+ LIS YCK G+L+ A+E M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 31/195 (15%)
Query: 338 NTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSAL-W----SSGDKIRALGMI 392
N+ L A C +G +QAL++ E + ++ P + +Y +F W G ++ + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL- 113
Query: 393 SEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT 452
S S G+ N+++S R G + A + M R + S+N+++ G+ K
Sbjct: 114 SSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKM-PER---DLFSWNVLVGGYAKA 165
Query: 453 RRINESIEVLAAMFEKGCKPNETTY--VLLIEGIGYGGWR--------------AEAMEL 496
+E++ + M G +P+ T+ VL G G +++
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG-GIPDLARGREVHAHVVRFGFELDVDV 224
Query: 497 ANALVSMHAISRDTF 511
NAL++M+ D
Sbjct: 225 VNALITMYVKCGDVV 239
|
Length = 857 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 106 VFAYNALISGFCKANQIELANKVLDRLRSRGFSP 139
+ YNAL+ KA +LA VL+ +++ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 337 YNTILAAFCKNGNADQALEIFEKLSDVGC 365
YN++++ +CK G ++ALE+F+++ + G
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 299 AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP 332
+Y+ L+ A K G DLA+ L+ M + G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 229 VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262
+ +YN LL L G + ++ EM + GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 534 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.98 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.93 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.93 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.87 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.87 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.87 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.86 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.82 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.81 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.75 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.73 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.71 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.7 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.69 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.67 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.67 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.66 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.63 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.63 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.62 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.59 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.58 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.58 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.57 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.53 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.53 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.52 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.52 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.5 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.5 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.46 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.43 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.41 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.38 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.36 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.34 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.3 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.29 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.29 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.27 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.26 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.23 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.22 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.11 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.06 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.05 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.05 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.03 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.01 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.94 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.93 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.92 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.9 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.9 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.88 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.86 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.83 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.82 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.77 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.77 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.63 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.63 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.57 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.52 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.47 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.43 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.42 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.4 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.35 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.34 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.33 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.33 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.32 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.27 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.25 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.22 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.19 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.16 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.14 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.13 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.12 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.11 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.08 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.07 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.04 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.04 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.03 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.02 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.02 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.02 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.01 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.0 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.97 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.95 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.94 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.88 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.83 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.83 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.79 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.78 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.76 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.72 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.71 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.71 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.69 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.6 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.58 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.53 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.53 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.48 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.47 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.42 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.41 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.37 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.32 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.32 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.31 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.3 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.29 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.16 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.14 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.1 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.09 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.06 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.04 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.01 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.01 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.91 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.9 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.89 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.79 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.74 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.59 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.56 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.52 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.49 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.48 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.42 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.38 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.3 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.3 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.23 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.2 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.19 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.16 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.05 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.05 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.96 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.89 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.8 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.73 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.72 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.56 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.47 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.44 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.42 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.32 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.27 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.22 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.15 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.12 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.96 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 94.94 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.92 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.65 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.59 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.49 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.35 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.28 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.08 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.95 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.7 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.63 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.58 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.57 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.55 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.44 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.39 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.27 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.19 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.1 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.04 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.96 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.88 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.49 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.48 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.44 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.4 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 92.39 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.28 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.98 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.92 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.8 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.74 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.57 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.5 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.34 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.06 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.02 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.8 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.78 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.61 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.58 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 90.35 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.2 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 90.16 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.08 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 90.06 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.9 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.88 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.74 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.63 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.62 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.55 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.38 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.35 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.25 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.19 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.84 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.51 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 88.34 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 88.07 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.84 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 87.1 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.07 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.81 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.66 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 86.44 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.4 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.37 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.88 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.5 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 85.36 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 85.32 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.24 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 85.23 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 84.88 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 84.8 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 84.63 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.38 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 84.24 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 83.89 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.55 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.26 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 82.73 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.63 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 81.98 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.91 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.87 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 81.45 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 80.67 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.43 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-63 Score=493.79 Aligned_cols=483 Identities=22% Similarity=0.352 Sum_probs=335.2
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGC-KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
-..+...|..++..+++.|++++|+++|++|...++ +++...+..++..|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~ 442 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNM 442 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHH
Confidence 345677899999999999999999999999999885 45666777888999999999999999998874 89999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHh-----------------cccccCChHHHHHHHHHHHH--cCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 192 TDKAMKLLDEM-----------------GMCKKGMVGQAFQFVRSLES--RGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 192 ~~~a~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
+++|.++|+.| .+.+.|++++|.+++.+|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999887 34455555555555555544 345556666666666666666666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047017 253 TEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP 332 (534)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (534)
+.|.+.++.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|.+.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 66666665566666666666666666666666666666666666666666666666666666666666666666655556
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLIS 412 (534)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 412 (534)
+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66666666666666666666666666665555556666666666666666666666666666665556666666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c-------------------CChHHHHHHHHHHHHcC
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----T-------------------RRINESIEVLAAMFEKG 469 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~ 469 (534)
+|.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|++|++.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 666666666666666666666666666666655544321 0 11244555666666666
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CchHHHHHHHhhc
Q 047017 470 CKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA-ISRDTFKRLNRTF 518 (534)
Q Consensus 470 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 518 (534)
+.||..+|..++.++...+..+.+..+++.+...+. .+...|..+...+
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 666666666555555555555555555554433322 2224444444443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-61 Score=480.95 Aligned_cols=468 Identities=19% Similarity=0.326 Sum_probs=372.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISG 115 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (534)
...+..++..|.+.|.+++|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+.+ .++..+|+.++.+
T Consensus 406 ~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~ 481 (1060)
T PLN03218 406 KIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33444455555555555555555555432 455555555555555555555555555555555 5555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|...|+.||..+|+.++.+|.+.|++++|
T Consensus 482 y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh-------------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 196 MKLLDEM-------------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 196 ~~~~~~~-------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
.++|++| .+.+.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5555544 244455555666666666999999999999999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047017 257 SRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVN 336 (534)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (534)
+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.+..||..+
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR 416 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 416 (534)
|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|++++|..++.+|.+.|+.||..+|+.++..|.+
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~ 801 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ----c-------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047017 417 ----D-------------------GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 417 ----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
. +..++|..+|++|.+.|+.||..+|+.++.+++..+....+..+++.|...+..|+
T Consensus 802 ~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 802 RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK 881 (1060)
T ss_pred HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc
Confidence 1 12467999999999999999999999999888888999999999999988888899
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 474 ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
..+|+.+++++.+. .++|..+++.|.+.|..+.-.
T Consensus 882 ~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 882 QSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999998432 478999999999999876643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=494.19 Aligned_cols=487 Identities=21% Similarity=0.298 Sum_probs=425.3
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-----------------------------------HHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMC-----------------------------------TKLI 79 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~ 79 (534)
++..+|+.+|..|.+.|++++|+.+|++|...|+.||..+| +.++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 56778999999999999999999999999887777765554 5667
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 047017 80 KKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIES 159 (534)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 159 (534)
.+|.+.|++++|..+|+.|. .++..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+.+.
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 77788889999999999887 468889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh-------------cccccCChHHHHHHHHHHHHcCCC
Q 047017 160 AFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM-------------GMCKKGMVGQAFQFVRSLESRGCQ 226 (534)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~~~~ 226 (534)
+.+++..+.+.|+.||..+|+.|+.+|.+.|++++|.++|++| .+.+.|++++|+++|++|...++.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999998 678899999999999999999999
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHH
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLI 306 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (534)
||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|+.|.+ +|..+|+.++
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi 462 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSII 462 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988764 3666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC---------------------
Q 047017 307 SAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC--------------------- 365 (534)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------- 365 (534)
.+|.+.|+.++|..+|++|.. ++.||..+|..++.+|++.|+.+.+.+++..+.+.|+
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 777777777777777777765 3667776666665554444444444444443333332
Q ss_pred ---------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCC
Q 047017 366 ---------PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME-STRF 435 (534)
Q Consensus 366 ---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 435 (534)
++|..+|+.++.+|.+.|+.++|+.+|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+
T Consensus 542 ~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 467888899999999999999999999999999999999999999999999999999999999998 6789
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 047017 436 RPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLN 515 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 515 (534)
.|+..+|+.++.+|.+.|++++|.+++++| .+.||..+|..|+.+|...|+.+.++...+++.+..|.+...+..+.
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence 999999999999999999999999999988 57889999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHhhhhhc
Q 047017 516 RTFPLLDVYKEISHLAT 532 (534)
Q Consensus 516 ~~~~~~~~~~~~~~~~~ 532 (534)
++|...|+|+++.+++.
T Consensus 699 n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 699 NLYADAGKWDEVARVRK 715 (857)
T ss_pred HHHHHCCChHHHHHHHH
Confidence 99999999999998864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=479.43 Aligned_cols=464 Identities=17% Similarity=0.296 Sum_probs=442.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANG-CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALI 113 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~ 113 (534)
+...|..++..+.+.|++++|+++|+.|...+ ..|+..+|+.++.++.+.++++.+.+++..+.+.+ .++..+++.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34479999999999999999999999998764 67899999999999999999999999999999998 88999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTD 193 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (534)
..|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.++...|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999997 57999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047017 194 KAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISS 273 (534)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (534)
.+.+++..+ .+.|..||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+
T Consensus 242 ~~~~l~~~~------------------~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~ 299 (697)
T PLN03081 242 AGQQLHCCV------------------LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAG 299 (697)
T ss_pred HHHHHHHHH------------------HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHH
Confidence 888877766 788999999999999999999999999999999996 4589999999999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 047017 274 LCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQA 353 (534)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 353 (534)
|++.|++++|.++|++|.+.|+.||..+|..++.+|++.|++++|.+++..+.+.|+.||..+++.++.+|++.|++++|
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES- 432 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 432 (534)
.++|++|.+ ||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+
T Consensus 380 ~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 380 RNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 999999964 688999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 433 TRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 433 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
.|+.|+..+|+.++.+|++.|++++|.+++++| +..|+..+|..++.+|...|+.+.|..+++++.+..|.+...|.
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 599999999999999999999999999999877 77899999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHhhhhhc
Q 047017 513 RLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~~ 532 (534)
.++..|...|+|++|.+++.
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-60 Score=484.95 Aligned_cols=483 Identities=19% Similarity=0.300 Sum_probs=324.4
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNA 111 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 111 (534)
..++...++.++..|.+.|+++.|..+|++|. +||..+|+.++.+|.+.|++++|..+|+.|...+ .||..+|+.
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 34677789999999999999999999999996 5789999999999999999999999999999887 778777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++.+|...+++..+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|+
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGE 268 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCC
Confidence 666666666666666666666666666666666666666666666666666666553 3455556666666666666
Q ss_pred HhHHHHHHHHh-----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 192 TDKAMKLLDEM-----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 192 ~~~a~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (534)
+++|.++|.+| .....|+.+.+.+++..+.+.|..||..+|+.++.+|.+.|++++|.++|++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 66666666555 2334455555555555555555555555555555555555555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047017 255 MISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI 334 (534)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (534)
|. .||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|..++.+|++.|+++.|.++++.+.+.|..|+.
T Consensus 349 m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 349 ME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred CC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 53 34555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhC------------------------------CCCCCHhhHHHHHHHHHhcCC
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSDV------------------------------GCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~~~ 384 (534)
.+++.++.+|++.|++++|.++|++|.+. +++||..+|+.++.+|.+.|+
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 55555555555555555555555555321 234444444444444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAA 464 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 464 (534)
.+.+.+++..+.+.|+.++..+++.++.+|.+.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444444444444444455555566666666666666554 56778888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--chHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 465 MFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI--SRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 465 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
|.+.|+.||..||..++.+|.+.|++++|.++|+.|.+..+. +...|..+...|...|++++|.+++.
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888888888888888888888888888888854333 23678888888888888888888765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=453.88 Aligned_cols=441 Identities=20% Similarity=0.305 Sum_probs=421.1
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
..++..+|..++.++.+.++++.|.+++..+.+.|+.||..+|+.++..|.+.|++++|.++|+.|. .++..+|+.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP---ERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC---CCCeeeHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999997 4789999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
+.+|++.|++++|.++|++|.+.|+.|+..+|..++.+|...|+.+.+.+++..+.+.|+.++..+++.|+.+|.+.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILIS 272 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 272 (534)
++|.++|+.| ..+|..+|+.++.+|.+.|++++|.++|++|.+.|+.||..||+.++.
T Consensus 276 ~~A~~vf~~m----------------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 276 EDARCVFDGM----------------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred HHHHHHHHhC----------------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999987 246899999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 047017 273 SLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQ 352 (534)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (534)
+|++.|++++|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|+.|.+ ||..+|+.++.+|++.|+.++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999864 688999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 353 ALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS-KGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 353 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
|.++|++|.+.|+.||..||+.++.+|.+.|..++|..+|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.+++++|
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~- 488 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA- 488 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence 999999999999999999999999999999999999999999986 589999999999999999999999999999876
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 432 STRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
++.|+..+|+.++.+|...|+++.|..+++++.+.++ .+..+|..+++.|.+.|++++|.++++.|.+.+..
T Consensus 489 --~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 489 --PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 4789999999999999999999999999999976542 25679999999999999999999999999998753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=299.49 Aligned_cols=485 Identities=13% Similarity=0.108 Sum_probs=313.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++.+....+........++..
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence 45567777777888888888888888777654 44566666666666666666666666666665544444444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----------------------------------cCCCHHHHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLC----------------------------------SRGMIESAF 161 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------------------~~g~~~~a~ 161 (534)
+.+.|++++|.++++.+.... +++..++..+...+. ..|++++|.
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 555555555555554444331 223344444444444 445555555
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh----------------cccccCChHHHHHHHHHHHHcCC
Q 047017 162 KVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~ 225 (534)
+.++++...+ +.+..++..++..+...|+.++|...+.++ .+...|++++|..+++.+....
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 5555444433 334444455555555555555555555443 2334555666666666555432
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
+.+...|..++.++...|++++|...++.+.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3345566666666666666666666666665543 2244555666666666666666666666666543 2245556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDK 385 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (534)
+..+...|++++|..+++.+.... +.+...+..++..+...|++++|...|+.+...+ |+..++..++.++...|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 666666666666666666666553 4455666666777777777777777777776653 3445666677777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +++..++..++..+...|+ .+|+..++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 77777777777652 4466777777777888888888888888887663 3466777778888888888 7788888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 466 FEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 466 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.+..+ .+..++..++..+...|++++|..+++++++.+|.++.++..++.++...|++++|..+++|
T Consensus 830 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 830 LKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77543 25566677888888899999999999999999998889999999999999999999888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=296.84 Aligned_cols=486 Identities=12% Similarity=0.051 Sum_probs=330.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..+...+...|++++|...++.+.... +.+...+..++..+...|++++|..+|+.+....|.+...+..+...
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 406 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34567778889999999999999999998875 66788899999999999999999999999999888899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+...|++++|.+.++.+.+.. +........++..+.+.|++++|..+++.+.... +++..++..++.++...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999998773 2234566678889999999999999999998764 67788999999999999999999
Q ss_pred HHHHHHh----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 196 MKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 196 ~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
.+.|+++ .+...|++++|...++.+.... +.+..++..+...+.+.|++++|..+++++...+
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999886 3456788888888888877654 3356677777777777777777777777776653
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047017 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339 (534)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (534)
+.+...+..++..+...|++++|..+++.+.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..
T Consensus 564 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 564 -PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred -ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 2345556666666666677777777666666542 3355566666666666666666666666666543 334555556
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGM 419 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 419 (534)
++.++...|++++|..+|+++.+.. |.+..++..++..+...|++++|..+++.+.+.. +++...+..++..+...|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 6666666666666666666665543 4444555555555555555555555555554432 2233444444444444455
Q ss_pred HHHHHHHHHHHHhCC--------------------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 420 VDEAVGLLVDMESTR--------------------------------FRPTVISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
+++|...++++...+ .+.+...+..++..|...|++++|...|+++++
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 555555554444331 122344444555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 468 KGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 468 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
.. +++..++..++..+...|+ .+|+.+++++++..|.++..+..++.++...|++++|...+.
T Consensus 799 ~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 799 KA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred hC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 43 2244455555555555555 445555555555555555555555555555566665555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-27 Score=249.79 Aligned_cols=484 Identities=12% Similarity=0.043 Sum_probs=267.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH----------
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY---------- 109 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------- 109 (534)
....++.+...++.+.|.+.++++.... +.++.++..++..+...|+.++|.+.++++.+..|.+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 5556667777778888888888777664 55677777777777778888888888888777776665543
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 110 ------NALISGFCKANQIELANKVLDRLRSRGFSPDVV-TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 110 ------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
..++..+...|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|.+.++++.+.. |.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 233445667778888888887777552 22221 11111122234577777777777777664 5566666777
Q ss_pred HHHHHhcCCHhHHHHHHHHhc-----------------------------------------------------------
Q 047017 183 IQATMLEGQTDKAMKLLDEMG----------------------------------------------------------- 203 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~~----------------------------------------------------------- 203 (534)
...+...|+.++|+..++++.
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 777777777777777766541
Q ss_pred -----------ccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhH----
Q 047017 204 -----------MCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP-NVVTY---- 267 (534)
Q Consensus 204 -----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---- 267 (534)
+...|++++|...|++..... +.+...+..+..++.+.|++++|+..|++..+..... ....+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 122355555555555555442 2245555556666666666666666666655542211 10111
Q ss_pred --------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047017 268 --------SILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339 (534)
Q Consensus 268 --------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (534)
......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 111234455566666666666665543 2234445555666666666666666666665542 112222211
Q ss_pred ------------------------------------------HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 340 ------------------------------------------ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 340 ------------------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
+...+...|++++|+..|+++.+.. |.++..+..+..
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1222334566666666666665553 445555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------------
Q 047017 378 ALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST------------------------ 433 (534)
Q Consensus 378 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------ 433 (534)
.|...|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 6666666666666666655431 112222222222222223333332222221100
Q ss_pred ---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 434 ---------------RFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 434 ---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
..+.+...+..+...+.+.|++++|+..++++++..+ .+...+..++..+...|++++|++.++
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0122333444455555566666666666666665532 245555566666666666666666666
Q ss_pred HHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 499 ALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 499 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
++.+..|.++..+..++.++...|++++|.++++
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6666666666666666666666666666665543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-26 Score=243.19 Aligned_cols=485 Identities=13% Similarity=0.029 Sum_probs=332.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVM-CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+......+.+.+...|++++|++.|+.+.+.+ +++... ...........|+.++|+..++.+.+..|.+..++..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34445667778999999999999999998765 444332 2122222334699999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC------------------C--------------CChhhH------------------
Q 047017 115 GFCKANQIELANKVLDRLRSRGF------------------S--------------PDVVTY------------------ 144 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~------------------ 144 (534)
.+...|+.++|++.++++..... . |+....
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999998764310 0 110000
Q ss_pred ---HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhc------------------
Q 047017 145 ---NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMG------------------ 203 (534)
Q Consensus 145 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------ 203 (534)
......+...|++++|+..|++.++.. |.+..++..+..++.+.|++++|+..|+++.
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 012345667899999999999999875 6678889999999999999999999988771
Q ss_pred ------------ccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047017 204 ------------MCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILI 271 (534)
Q Consensus 204 ------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 271 (534)
+...|++++|...++++.... +.+...+..+..++...|++++|++.|+++++... .+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 124577888888888888764 34566777888889999999999999999887632 2344444444
Q ss_pred HHH------------------------------------------HhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHH
Q 047017 272 SSL------------------------------------------CRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAY 309 (534)
Q Consensus 272 ~~~------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (534)
..+ ...|++++|+..++++.+.. +.+...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 433 23344444444444444432 11333344444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH---------hhHHHHHHHHH
Q 047017 310 CKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV---------SSYNTMFSALW 380 (534)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~ 380 (534)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++. ..+...+..+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 44444444444444444331 222333333333334444444444444443221111111 01122344455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047017 381 SSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIE 460 (534)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 460 (534)
..|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|.+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666551 24456677788899999999999999999999863 3367888999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch------HHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 461 VLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR------DTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.++.+.+... .+..++..+..++...|++++|.+++++++...+..+ ..+..+++++...|++++|...+.+
T Consensus 659 ~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 659 QLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999887532 3566777888899999999999999999999876543 3566779999999999999987653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=217.08 Aligned_cols=455 Identities=16% Similarity=0.137 Sum_probs=386.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
....+.....+.|++.+|++.-...-+.+ +.+.+....+...+.+..+++.....-....+..+.-.++|..+...+-.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 36778888999999999999887766654 55566666667778888888888877777777778889999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 047017 119 ANQIELANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
.|+++.|+.+++.+.+. .| .+..|..+..++...|+.+.|.+.|.+.++.+ |...-....+...+...|++++|..
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999987 44 58899999999999999999999999999874 3333344556666777888888888
Q ss_pred HHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh
Q 047017 198 LLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISSLCR 276 (534)
Q Consensus 198 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 276 (534)
.+.+. .+.. +--...|..|...+...|+...|+..|++.++. .|+ ...|..|...|..
T Consensus 206 cYlkA------------------i~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 206 CYLKA------------------IETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKE 264 (966)
T ss_pred HHHHH------------------HhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHH
Confidence 77765 3331 223467899999999999999999999999887 344 5689999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 047017 277 DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEI 356 (534)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 356 (534)
.+.+++|...+.++.... +.....+..+...|...|.+|.|+..+++.++.. +.=+..|+.+..++-..|+..+|...
T Consensus 265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 999999999999988763 3356678888888999999999999999999874 33467899999999999999999999
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047017 357 FEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDGMVDEAVGLLVDMESTRF 435 (534)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 435 (534)
|.+..... +......+.|...+...|.+++|..+|....+. .|. ...++.|...|-.+|++++|...+++.++ +
T Consensus 343 YnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 343 YNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 99999884 778889999999999999999999999999884 444 56789999999999999999999999987 5
Q ss_pred CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 436 RPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 436 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
.|+ ...++.+...|-..|+.+.|+..+.+++..++. -.+.++.|...|..+|+..+|+.-|+.++++.|..|+++-.+
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 776 568899999999999999999999999986432 467888999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHH
Q 047017 515 NRTFPLLDVYKE 526 (534)
Q Consensus 515 ~~~~~~~~~~~~ 526 (534)
..++.-..+|.+
T Consensus 497 lh~lq~vcdw~D 508 (966)
T KOG4626|consen 497 LHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHhcccc
Confidence 999988877765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-23 Score=205.85 Aligned_cols=476 Identities=14% Similarity=0.068 Sum_probs=287.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
....+...|++++|+..|+.+++.. |.+..++..+...|...|++++|+..+++..+.+|.|...+..+... +++
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~ 124 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVE 124 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccC
Confidence 3334445588888888888888776 45577788888888888888888888888887777666555554222 666
Q ss_pred HHHHHHHHHHHhCC--------------------------------------CCCChhhHHHH-HHHHHcCCCHHHHHHH
Q 047017 123 ELANKVLDRLRSRG--------------------------------------FSPDVVTYNIM-IGSLCSRGMIESAFKV 163 (534)
Q Consensus 123 ~~a~~~~~~~~~~~--------------------------------------~~~~~~~~~~l-~~~~~~~g~~~~a~~~ 163 (534)
++|..+++++.... ..|+..+.... ..+|.+.|++++|+++
T Consensus 125 ~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 125 VKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 66666666665441 01122222222 5677778888888888
Q ss_pred HHHHHhCCC------------------------------CCCHhhHHHHHHHHHhcCCHhHHHHHHHHh-----------
Q 047017 164 FDQLLRDNC------------------------------KPTVITYTILIQATMLEGQTDKAMKLLDEM----------- 202 (534)
Q Consensus 164 ~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------- 202 (534)
+.++.+.+. +.++..+..++..|.+.|+.++|..+++++
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 888776541 123333445556677777777777777766
Q ss_pred -------------------------------------cccccC-----------------------------ChHHHHHH
Q 047017 203 -------------------------------------GMCKKG-----------------------------MVGQAFQF 216 (534)
Q Consensus 203 -------------------------------------~~~~~~-----------------------------~~~~a~~~ 216 (534)
.+...+ ...++...
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 011111 12222222
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCChhhHHHHHHHHHhCCC---hhHHHHH-----
Q 047017 217 VRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR-G-LEPNVVTYSILISSLCRDGK---TEDAVDV----- 286 (534)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~----- 286 (534)
+..+... .+-+......+.....+.|+.++|..+|+..... + ..++......++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 365 ARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 2222111 0113333333444456678888888888777653 1 12223334455555555544 2222222
Q ss_pred -----------------HHHHHHC-CC-CC--CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 287 -----------------LRAAKEK-GL-TP--DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFC 345 (534)
Q Consensus 287 -----------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (534)
+...... +. ++ +...+..+..++.. ++.++|...+.+..... |+......+...+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHH
Confidence 1111111 11 22 45556666666655 67777777666666552 44443334444455
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047017 346 KNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVG 425 (534)
Q Consensus 346 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 425 (534)
..|++++|+..|+++... +|+...+..++.++...|+.++|...+++..+.. ++....+..+.......|++++|..
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777776543 4444555566667777777777777777777653 2222333333333445577777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 426 LLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.+++..+. .|+...+..+..++.+.|++++|...++++++..+. +...+..+..++...|++++|+..++++++..|
T Consensus 598 ~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77777764 445667777777777777777777777777776432 566666777777777777777777777777777
Q ss_pred CchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 506 ISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 506 ~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.++.++..++.++...|++++|...+++
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777777777777777766543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=196.88 Aligned_cols=428 Identities=14% Similarity=0.134 Sum_probs=363.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
....+..-..+.|++++|++.....-..++.+......+-..+.+..+.+.....-....+.. +.-..+|..+...+..
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 356677778899999999999998888888887777777788888888887666554444442 4468899999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhh-H
Q 047017 154 RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVIS-Y 232 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 232 (534)
.|+++.|+.+|+.+++.. +.....|..+..++...|+.+.|.+.|... .. +.|+... .
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~a------------------lq--lnP~l~ca~ 187 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEA------------------LQ--LNPDLYCAR 187 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHH------------------Hh--cCcchhhhh
Confidence 999999999999999875 667889999999999999999999988765 33 3444433 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhc
Q 047017 233 NMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKD 312 (534)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (534)
..+...+-..|+.++|...+.+.++... --...|+.|...+-.+|+...|+..|+++.+.+. .-...|..|...|...
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEA 265 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHH
Confidence 4455666678999999999998887632 2466899999999999999999999999998642 2356889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 313 GRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMI 392 (534)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 392 (534)
+.+++|...+.++.... +.....+..+...|..+|..+.|+..|++..+.. |.-+..|+.+..++-..|+..+|...+
T Consensus 266 ~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999999998873 4556788889999999999999999999999874 666789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 393 SEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
.+.+... +......+.|...|...|.+++|..+|....+. .|. ...++.|...|-++|++++|+..++++++- .
T Consensus 344 nkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~ 418 (966)
T KOG4626|consen 344 NKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K 418 (966)
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 9999863 334678899999999999999999999998874 443 567889999999999999999999999875 4
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 472 PN-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 472 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
|+ ...++.+...|...|+.+.|...|.+++..+|.-.+++..|+-+|...|+..+|++-++
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 54 67889999999999999999999999999999999999999999999999998887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-23 Score=205.23 Aligned_cols=439 Identities=12% Similarity=0.052 Sum_probs=294.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
+......+...|++++|...|+.+.+..|.+..++..++.+|...|++++|...+++..+. .|+...+..++..+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i--- 121 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI--- 121 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---
Confidence 3334444556699999999999999999999999999999999999999999999999987 55544444433222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHH----------------------------------------HHHHHhcCCHhH
Q 047017 155 GMIESAFKVFDQLLRDNCKPTVITYTIL----------------------------------------IQATMLEGQTDK 194 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~~~~~~l----------------------------------------~~~~~~~g~~~~ 194 (534)
+++++|..+++++.... |.+..++..+ .++|...|++++
T Consensus 122 ~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 78888888888887654 3333333322 444555666666
Q ss_pred HHHHHHHh----------------cccc-cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 195 AMKLLDEM----------------GMCK-KGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 195 a~~~~~~~----------------~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
|++++.++ .+.. .++ +++..+++. ..+.++..+..++..+.+.|+.++|..+++++..
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 66666655 1111 122 333333221 1224566677777888888888888888777643
Q ss_pred CCCC-CChhhH------------------------------HHHHHHHHh------------------------------
Q 047017 258 RGLE-PNVVTY------------------------------SILISSLCR------------------------------ 276 (534)
Q Consensus 258 ~~~~-~~~~~~------------------------------~~l~~~~~~------------------------------ 276 (534)
.... |...++ ..++..+.+
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence 3111 110000 001122222
Q ss_pred ---------------------------------CCChhHHHHHHHHHHHC-C-CCCCHhcHHHHHHHHHhcCC---HHHH
Q 047017 277 ---------------------------------DGKTEDAVDVLRAAKEK-G-LTPDAYSYDPLISAYCKDGR---LDLA 318 (534)
Q Consensus 277 ---------------------------------~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a 318 (534)
.|+.++|..+++..... + ..++......++..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 23333344444333331 0 01122233355555555544 2222
Q ss_pred HHH-------------------------HHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhh
Q 047017 319 IEF-------------------------LDYMISDGCLP--DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSS 371 (534)
Q Consensus 319 ~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 371 (534)
..+ +..+... .++ +...+..+..++.. ++.++|+..+.+.... .|+...
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 222 1111111 133 56778888888876 8899999988888776 345444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK 451 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 451 (534)
...+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+++..+.. ++....+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 444556667899999999999998764 4555556677888899999999999999998764 2233333344445556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.|++++|...++++++.. |+...+..+..++.+.|++++|+..++++++..|.++..+..++.++...|++++|+.++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 799999999999999874 568889999999999999999999999999999999999999999999999999999877
Q ss_pred cc
Q 047017 532 TK 533 (534)
Q Consensus 532 ~k 533 (534)
.+
T Consensus 667 ~~ 668 (987)
T PRK09782 667 ER 668 (987)
T ss_pred HH
Confidence 54
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-22 Score=200.14 Aligned_cols=436 Identities=14% Similarity=0.037 Sum_probs=306.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+......+.+.|++++|+..|++++.. .|+...|..+..++...|++++|+..++.+.+.+|.+..++..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 446677889999999999999999876 467888999999999999999999999999999899999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLL 199 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 199 (534)
|++++|...|..+...+-..+.. ...++..+.. ..+........+.. +++...+..+...+ ..........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhh
Confidence 99999999888776542111211 1122211111 22333333333332 33333333333322 111111111111
Q ss_pred HHhcccccCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-ChhhHHHHHHH
Q 047017 200 DEMGMCKKGMVGQAFQFVRSLESRGCQPD-VISYNMLLRTL---LNMGKWEEGEKLMTEMISRG-LEP-NVVTYSILISS 273 (534)
Q Consensus 200 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~ 273 (534)
... .. ..+. ...+..+...+ ...+++++|.+.|+..+..+ ..| ....+..+...
T Consensus 281 ~~~------------------~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 281 EDS------------------NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred hcc------------------cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 100 00 0111 01111111111 23467889999999888764 122 44567777888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 047017 274 LCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQA 353 (534)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 353 (534)
+...|++++|+..+++..+.. +.....+..+...+...|++++|...++.+++.. +.+..++..++..+...|++++|
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999988763 2245677788888888999999999999888764 55678888888899999999999
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
+..|++..+.. |.+...+..+..++...|++++|+..+++..+. .+.+...++.+..++...|++++|.+.|++....
T Consensus 419 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 419 GKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99999998875 667788888888899999999999999988875 2445778888888999999999999999988775
Q ss_pred CCCCChh------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 434 RFRPTVI------SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 434 ~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
....+.. .++..+..+...|++++|..+++++++.++ .+...+..+++.+...|++++|.++|+++.+.....
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 3221111 111222233446899999999999888653 245677888999999999999999999998887765
Q ss_pred hH
Q 047017 508 RD 509 (534)
Q Consensus 508 ~~ 509 (534)
.+
T Consensus 576 ~e 577 (615)
T TIGR00990 576 GE 577 (615)
T ss_pred HH
Confidence 54
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-22 Score=200.91 Aligned_cols=426 Identities=12% Similarity=0.000 Sum_probs=279.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
+...+..+.+.|++++|+..|+.+....| ++..|..+..+|.+.|++++|++.++..++.+ +.+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 33445556666666666666666655533 34555666666666666666666666666552 22345555566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047017 155 GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNM 234 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (534)
|++++|+..|..+...+ +.+......++..+... .+. ......... .+++...+..
T Consensus 208 g~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~----~a~------------------~~~~~~l~~-~~~~~~~~~~ 263 (615)
T TIGR00990 208 GKYADALLDLTASCIID-GFRNEQSAQAVERLLKK----FAE------------------SKAKEILET-KPENLPSVTF 263 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHH----HHH------------------HHHHHHHhc-CCCCCCCHHH
Confidence 66666666555444332 11111111111111110 000 111111111 1222222322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHH---HHhCCChhHHHHHHHHHHHCC-C-CCCHhcHHHHHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISS---LCRDGKTEDAVDVLRAAKEKG-L-TPDAYSYDPLISA 308 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~ 308 (534)
+...+ ..........-+....+. .+. ...+..+... ....+++++|...|+.+.+.+ . +.....+..+...
T Consensus 264 ~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 264 VGNYL-QSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred HHHHH-HHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 22222 111111111111111111 111 1112222111 123578999999999999864 1 2244567788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047017 309 YCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRA 388 (534)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 388 (534)
+...|++++|...+++++... +.....+..+...+...|++++|+..|+++.+.. |.+...+..+...+...|++++|
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999874 3456788889999999999999999999998875 77889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 389 LGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
+..|++.++.. +.+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++...|++++|+..|+++++.
T Consensus 419 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 419 GKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99999999863 3456778888899999999999999999998752 345778899999999999999999999999986
Q ss_pred CCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 469 GCKPNET------TYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 469 ~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
....+.. .+......+...|++++|..+++++++.+|.+..++..+++++...|++++|...+++
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4331111 1122222334579999999999999999999999999999999999999999988754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-22 Score=185.47 Aligned_cols=437 Identities=14% Similarity=0.106 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047017 90 KAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFS--PDVVTYNIMIGSLCSRGMIESAFKVFDQL 167 (534)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 167 (534)
.+..++...-..++.++.+.+.|...+.-.|+++.+..+...+...... .-...|..+.++|...|++++|...|.+.
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444444444555556666666666667777777766666544211 12334566677777777777777777776
Q ss_pred HhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHh----------------ccccc----CChHHHHHHHHHHHHcCCC
Q 047017 168 LRDNCKPT-VITYTILIQATMLEGQTDKAMKLLDEM----------------GMCKK----GMVGQAFQFVRSLESRGCQ 226 (534)
Q Consensus 168 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~----------------~~~~~----~~~~~a~~~~~~~~~~~~~ 226 (534)
.+.. +.+ ...+..|++.|.+.|+++.+...|+++ .|... ...+.|..++.+..... +
T Consensus 334 ~k~~-~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 334 LKAD-NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred HccC-CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 6653 222 344556667777777777777777666 12222 13455566665555442 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC---CCCCC-
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMI----SRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEK---GLTPD- 298 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~- 298 (534)
.|...|..+...+....-+.. +..|..+. ..+-.+.+...+.+...+...|+++.|...|..+... ...++
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 355666666655554433333 55554443 2333456667777777777778888888777776654 11112
Q ss_pred -----HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 047017 299 -----AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYN 373 (534)
Q Consensus 299 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 373 (534)
..+-..+...+-..++.+.|.+.|..+.+.. +.-+..|..++......++..+|...+..+.... ..++..+.
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars 568 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS 568 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence 2233445555566677777777777777762 3233445555544445567777877777777654 55666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCChh
Q 047017 374 TMFSALWSSGDKIRALGMISEMLSK-GIEPDEITYNSLISCLCR------------DGMVDEAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 374 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~ 440 (534)
.+...+.....+..|.+-|....+. ...+|....-.|+..|.. .+..++|+++|.+.++.. +-|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 7777777777777777766655543 123466666666665542 244667777877777653 33666
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CchHHHHHHHhhc
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA--ISRDTFKRLNRTF 518 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 518 (534)
.-+.+.-+++..|++.+|..+|.+..+... ....+|..++.+|..+|++..|++.|+...+... +.++++..|++++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 667777788888888888888888877543 2556778888888888888888888888888643 4567888888888
Q ss_pred chHHHHHHhhhhhcc
Q 047017 519 PLLDVYKEISHLATK 533 (534)
Q Consensus 519 ~~~~~~~~~~~~~~k 533 (534)
...|+|+++.+.+.+
T Consensus 727 y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLK 741 (1018)
T ss_pred HHhhhHHHHHHHHHH
Confidence 888888888776543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-21 Score=189.82 Aligned_cols=335 Identities=13% Similarity=0.080 Sum_probs=276.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
.....++..+.+.|++++|+.+++..+... +.+...+..++.+....|++++|...++.+....|.+..++..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345567888999999999999999998875 6667788888888889999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
..|++++|...++++.... +.+...+..++..+...|++++|...++.+.... +.+...+..++ .+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~~-~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATCL-SFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHcCCHHHHHH
Confidence 9999999999999999872 3357788889999999999999999999887764 33444444433 4677888888888
Q ss_pred HHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC
Q 047017 198 LLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRD 277 (534)
Q Consensus 198 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (534)
.++.+ ......++...+..++..+...|++++|+..++.+.... +.+...+..+...+...
T Consensus 199 ~~~~~------------------l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~ 259 (656)
T PRK15174 199 LARAL------------------LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQS 259 (656)
T ss_pred HHHHH------------------HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 87765 443323344455566778889999999999999999875 33677888899999999
Q ss_pred CChhH----HHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 047017 278 GKTED----AVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQA 353 (534)
Q Consensus 278 ~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 353 (534)
|++++ |...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..++.+.|++++|
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99986 899999998874 3467788899999999999999999999999874 44667788889999999999999
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
+..|+.+.... |.+...+..+..++...|++++|...|+++.+.
T Consensus 338 ~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 338 SDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998764 444444555677889999999999999999875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-21 Score=181.62 Aligned_cols=463 Identities=14% Similarity=0.072 Sum_probs=333.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHH
Q 047017 51 GKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANK 127 (534)
Q Consensus 51 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 127 (534)
..+..+++++..+-..+ +.++.+.+.|...+.-.|+++.+..+.+.+.... +.-...|..+.++|...|++++|..
T Consensus 250 ~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45556666666665544 5566677777777777777777777777666554 2233456777777777777777777
Q ss_pred HHHHHHhCCCCCCh--hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHHH
Q 047017 128 VLDRLRSRGFSPDV--VTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG----QTDKAMKLLDE 201 (534)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~ 201 (534)
+|.+..+. .++. ..+..+...|...|+++.+...|+.+.+.. |.+..+...|+..|...+ ..+.|..++.+
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 77766655 3333 233356667777777777777777777664 556666666666666554 34445544444
Q ss_pred h---------------cccccCChHHHHHHHH----HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 047017 202 M---------------GMCKKGMVGQAFQFVR----SLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR---G 259 (534)
Q Consensus 202 ~---------------~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 259 (534)
. .....++...++..+. .+...+..+.+...|.+...+...|+++.|...|...... .
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 3 1222333333344443 3345566678899999999999999999999999988765 1
Q ss_pred CCCCh------hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047017 260 LEPNV------VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPD 333 (534)
Q Consensus 260 ~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 333 (534)
..++. .+-..+....-..++++.|.+.|..+.+.. +.-...|..++......+...+|...+..+...+ ..+
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 22333 234556777778889999999999999863 2234455555544555688899999999998874 567
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCC
Q 047017 334 IVNYNTILAAFCKNGNADQALEIFEKLSDVG-CPPNVSSYNTMFSALWS------------SGDKIRALGMISEMLSKGI 400 (534)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~ 400 (534)
+..+..+...+.....+..|.+-|+.+.+.- ..+|+.+...|...|.. .+..++|+++|.+.++..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 8888888889999999999988777665442 13466666666665532 235678999999988863
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHH
Q 047017 401 EPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK-GCKPNETTYVL 479 (534)
Q Consensus 401 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 479 (534)
+-|...-+.+.-+++..|++.+|..+|.+..+.. .....+|..++++|..+|++..|++.|+...+. ....+..+...
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 4467777888889999999999999999998863 236678899999999999999999999998874 44557888999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 480 LIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 480 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
|.+++.+.|.+.+|.+....+....|.++.....++-+..+.
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 999999999999999999999999999998777776665443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-21 Score=192.76 Aligned_cols=420 Identities=12% Similarity=0.001 Sum_probs=275.1
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
...++....-.+....-.|+.++|+++++++.... +.....+..++.++...|++++|..+++.+.+..|.+...+..+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34677777778888888889999998888887633 55666788888888888999999999988888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
+.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. |.+...+..++.++...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 888888889999998888888762 33455 7778888888888899998888888875 55666667777777777888
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV------ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVT 266 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 266 (534)
+.|+..++.+ .. .|+. .....++......
T Consensus 167 e~Al~~l~~~------------------~~---~p~~~~~l~~~~~~~~~r~~~~~------------------------ 201 (765)
T PRK10049 167 APALGAIDDA------------------NL---TPAEKRDLEADAAAELVRLSFMP------------------------ 201 (765)
T ss_pred HHHHHHHHhC------------------CC---CHHHHHHHHHHHHHHHHHhhccc------------------------
Confidence 8787777654 11 1220 0001111111000
Q ss_pred HHHHHHHHHhCCCh---hHHHHHHHHHHHC-CCCCCHh-cHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHH
Q 047017 267 YSILISSLCRDGKT---EDAVDVLRAAKEK-GLTPDAY-SYD----PLISAYCKDGRLDLAIEFLDYMISDGCL-PDIVN 336 (534)
Q Consensus 267 ~~~l~~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 336 (534)
.....+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+. .
T Consensus 202 ------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a 274 (765)
T PRK10049 202 ------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-A 274 (765)
T ss_pred ------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-H
Confidence 00111122 4455555555532 1111111 110 1122334556666666666666655311 111 1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CC
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPN----VSSYNTMFSALWSSGDKIRALGMISEMLSKG-----------IE 401 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~ 401 (534)
...+...|...|++++|+..|+++.... +.+ ......+..++...|++++|...++.+.+.. ..
T Consensus 275 ~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 275 QRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 2223556666666666666666655432 111 2234444555666666666666666665531 01
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047017 402 PD---EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYV 478 (534)
Q Consensus 402 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 478 (534)
|+ ...+..+...+...|++++|++.++++.... +.+...+..++..+...|++++|+..+++++...+ .+...+.
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~ 431 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEV 431 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHH
Confidence 23 2344566677888899999999999887763 34577788888888899999999999999888642 2466666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
..+..+...|++++|+..++++++..|.++.+.
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 777788888999999999999999988887443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-20 Score=187.46 Aligned_cols=377 Identities=12% Similarity=0.028 Sum_probs=252.8
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.+...+..+...+...|++++|..+|+++++.. |.+...+..++.++...|++++|+..++.+.+..|.+.. +..+..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 344568899999999999999999999998875 667888889999999999999999999999999888888 999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHh
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVI------TYTILIQATML 188 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~ 188 (534)
++...|+.++|...++++.+.. +.+...+..+...+...|..++|++.++.+.. .|+.. ....++..+..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999873 33566667788888899999999999987664 22210 11111111111
Q ss_pred cCCHhHHHHHHHHhcccccCCh---HHHHHHHHHHHHc-CCCCCHh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 189 EGQTDKAMKLLDEMGMCKKGMV---GQAFQFVRSLESR-GCQPDVI-SY----NMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 189 ~g~~~~a~~~~~~~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
.+. ...+.+ ++|+..++.+... ...|+.. .+ ...+..+...|++++|+..|+.+.+.+
T Consensus 201 ~~~-------------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 201 PTR-------------SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred ccc-------------ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 100 111112 3444445544533 1122211 11 111334456688888888888887764
Q ss_pred CC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC---CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 047017 260 LE-PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTP---DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGC----- 330 (534)
Q Consensus 260 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 330 (534)
.+ |+. ....+...|...|++++|+.+|+++.+..... .......+..++...|++++|...++.+.....
T Consensus 268 ~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~ 346 (765)
T PRK10049 268 QIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL 346 (765)
T ss_pred CCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence 22 221 22224667888888888888888877643211 123345556677788888888888888776521
Q ss_pred ------CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 331 ------LPD---IVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIE 401 (534)
Q Consensus 331 ------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (534)
.|+ ...+..++..+...|+.++|+..++++.... |.+...+..++..+...|++++|+..++++.... +
T Consensus 347 ~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-P 424 (765)
T PRK10049 347 YGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-P 424 (765)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C
Confidence 012 1234455666667777777777777776653 6666667777777777777777777777776642 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
.+...+...+..+...|++++|..+++++++.
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 23455555556666777777777777777664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-20 Score=181.37 Aligned_cols=438 Identities=12% Similarity=0.024 Sum_probs=253.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELAN 126 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 126 (534)
..+.|+++.|+..|+++++.. |.+......++..+...|+.++|+..+++.....+........++..+...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 567777777777777777654 2222222266666777777777777777777322444444444466777777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccc
Q 047017 127 KVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCK 206 (534)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 206 (534)
++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl---- 195 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA---- 195 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH----
Confidence 7777777762 224555666667777777777777777777665 334444433333333344444455555554
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH------HHHHHHHH-----
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY------SILISSLC----- 275 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~~----- 275 (534)
.... +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...++.-.
T Consensus 196 --------------l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 196 --------------VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred --------------HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccccccc
Confidence 4442 335666677777777777777777666542211 11111111 11111110
Q ss_pred hCCCh---hHHHHHHHHHHHC-CCCCCH-----hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 276 RDGKT---EDAVDVLRAAKEK-GLTPDA-----YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346 (534)
Q Consensus 276 ~~~~~---~~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (534)
..+++ +.|+.-++.+... +..|.. ......+.++...+++.++++.++.+...+.+....+...++.+|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 01112 2344444444331 111221 11223345566677777777777777766544445566677777777
Q ss_pred CCCHHHHHHHHHHHhhCC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHH
Q 047017 347 NGNADQALEIFEKLSDVG-----CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-----------EPDE---ITY 407 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~ 407 (534)
.+++++|..+|+.+.... .+++......|..++...+++++|..+++.+.+... .|+. ..+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 777777777777765432 122333345667777777777777777777765311 1121 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 487 (534)
..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|...++.+....+ -+..+....+.++...
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l 497 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhh
Confidence 344555666777777777777776542 33666666777777777777777777766655432 2455555666677777
Q ss_pred CCHHHHHHHHHHHHHcCCCchHH
Q 047017 488 GWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 488 g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
|++++|..+.+++.+..|.++.+
T Consensus 498 ~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 498 QEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhHHHHHHHHHHHHhhCCCchhH
Confidence 77777777777777777766643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-20 Score=186.01 Aligned_cols=360 Identities=11% Similarity=0.077 Sum_probs=292.4
Q ss_pred HHhcCChhHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH
Q 047017 47 SFRAGKFDESLYFIESMVAN--GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL 124 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 124 (534)
+.++.+|+.---+|....+. ....+..-...++..+.+.|++.+|..+++.+....|.+..++..++.+....|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 45566676665555554332 1122334456677788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcc
Q 047017 125 ANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGM 204 (534)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 204 (534)
|.+.++++.... +.+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...++.+
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~-- 170 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ-- 170 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH--
Confidence 999999999873 3357788889999999999999999999999875 667788899999999999999999988765
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHH
Q 047017 205 CKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
..... .+...+..+ ..+...|++++|...++.+......++......+...+...|++++|+
T Consensus 171 ----------------~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 171 ----------------AQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred ----------------HHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHH
Confidence 33322 233334333 347889999999999999887643344555566677889999999999
Q ss_pred HHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 047017 285 DVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDL----AIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKL 360 (534)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 360 (534)
..++.+.+.. +.+...+..+...+...|++++ |...++++.... +.+...+..+...+...|++++|+..++++
T Consensus 233 ~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 233 QTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999875 3467788889999999999985 899999999874 557788999999999999999999999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 361 SDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDE-ITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
.... |.+...+..+..++...|++++|...++++... .|+. ..+..+..++...|++++|...|++..+.
T Consensus 311 l~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 311 LATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9875 677888888999999999999999999999875 3443 34444567788999999999999999875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-21 Score=183.66 Aligned_cols=303 Identities=15% Similarity=0.180 Sum_probs=185.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcCC
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD---VVTYNIMIGSLCSRG 155 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 155 (534)
+..+...|++++|...|+++.+.+|.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33445566666666666666666665666666666666666666666666666655421111 134555666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC----Hhh
Q 047017 156 MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD----VIS 231 (534)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 231 (534)
++++|..+|+++.+.. +.+..++..++.++...|++++|.+.++.+ ...+..+. ...
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL------------------EKLGGDSLRVEIAHF 182 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH------------------HHhcCCcchHHHHHH
Confidence 6666666666666543 445556666666666666666666666665 22211111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.+.......+..++.+|..
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 4455666667777777777777776653 223445666667777777777777777777665322223455666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh---cCCHHHH
Q 047017 312 DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS---SGDKIRA 388 (534)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a 388 (534)
.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++
T Consensus 262 ~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred cCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhH
Confidence 77777777777777665 244455566777777777777777777777664 4566666666655543 3467777
Q ss_pred HHHHHHHHHCCCCCCHH
Q 047017 389 LGMISEMLSKGIEPDEI 405 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~ 405 (534)
..+++++.+.++.|++.
T Consensus 338 ~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 77777777655555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-21 Score=183.87 Aligned_cols=304 Identities=15% Similarity=0.129 Sum_probs=234.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHh
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT---VITYTILIQATML 188 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 188 (534)
....+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455677889999999999998873 33566788888889999999999999998887532211 2467788888999
Q ss_pred cCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----
Q 047017 189 EGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV---- 264 (534)
Q Consensus 189 ~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 264 (534)
.|++++|..+|+++ .+. .+.+..++..++..+...|++++|.+.++.+...+..+..
T Consensus 120 ~g~~~~A~~~~~~~------------------l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (389)
T PRK11788 120 AGLLDRAEELFLQL------------------VDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA 180 (389)
T ss_pred CCCHHHHHHHHHHH------------------HcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH
Confidence 99999999998886 322 2346778888999999999999999999998876533221
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAF 344 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (534)
..+..++..+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++...+......++..++.+|
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 235567777888999999999999988764 3345677778888899999999999999988764222245677888889
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHH
Q 047017 345 CKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR---DGMVD 421 (534)
Q Consensus 345 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~ 421 (534)
...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+
T Consensus 260 ~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccch
Confidence 9999999999999988876 355566688888899999999999999888875 5777778777776654 45888
Q ss_pred HHHHHHHHHHhCCCCCChh
Q 047017 422 EAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~ 440 (534)
++..+++++.+.++.|++.
T Consensus 336 ~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 336 ESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 8999999888776666665
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=168.59 Aligned_cols=493 Identities=16% Similarity=0.111 Sum_probs=321.1
Q ss_pred cCCCCccCCCCCCcccccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHhHHHHHHH
Q 047017 18 VSSSAETRPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMC-TKLIKKFFQERKSNKAVRVME 96 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~ 96 (534)
....+.+........++++-.+...|...|..+....+|+..|+-+++....|+.... ..+++.+.+..++.+|++.++
T Consensus 182 lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyr 261 (840)
T KOG2003|consen 182 LVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYR 261 (840)
T ss_pred HHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHH
Confidence 4455566677778888899999999999999999999999999999988777776654 457788999999999999999
Q ss_pred HHHHcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 97 ILEKYGEP-----DVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 97 ~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
..+..-|. ...+.+.+...+.+.|+++.|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|+...
T Consensus 262 maldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 262 MALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred HHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 88876522 2345666777788999999999999999887 7887777777778888999999999999998653
Q ss_pred CCC------------CHhhHHHHHHH-----HHhcC--CHhHHHHHHHHh-cccccCC----hHHHHHHHHHHHHcCCCC
Q 047017 172 CKP------------TVITYTILIQA-----TMLEG--QTDKAMKLLDEM-GMCKKGM----VGQAFQFVRSLESRGCQP 227 (534)
Q Consensus 172 ~~~------------~~~~~~~l~~~-----~~~~g--~~~~a~~~~~~~-~~~~~~~----~~~a~~~~~~~~~~~~~~ 227 (534)
..+ +....+..+.. .-+.. +-++++-.--++ .-.-.-+ .+-+++.++.-.....
T Consensus 340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l-- 417 (840)
T KOG2003|consen 340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL-- 417 (840)
T ss_pred CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh--
Confidence 222 22222222211 11111 111111111111 0000000 1111111111100000
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--hCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC--RDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
-...-..-...+.++|+++.|+++++-+.+..-+.....-+.|...+. .-.++..|..+-+.....+ .-++.....-
T Consensus 418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nk 496 (840)
T KOG2003|consen 418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNK 496 (840)
T ss_pred hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcC
Confidence 000011122346788888888888887776543322223333332222 2346777777776665542 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDK 385 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (534)
.......|++++|.+.+++.+..+.. -...+..+...+...|+.++|+..|-++... +..+..++..+...|....+.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 44555678888888888887765321 1222333445566778888888888777554 245777777888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
..|++++.+.... ++.|+.++..|...|-+.|+-.+|.+.+-.--.. ++-+..+...|...|....-+++++.+|+++
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888777665 5667778888888888888888877765443332 4556777777887788888888888888877
Q ss_pred HHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 466 FEKGCKPNETTYVLLIE-GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 466 ~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
.- ++|+..-|..++. ++.+.|+++.|..+|+..-+..|.+.+.+..|.++...+
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 43 4777777775544 445778888888888888888888888777777766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-18 Score=171.52 Aligned_cols=435 Identities=11% Similarity=0.042 Sum_probs=330.4
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSL 151 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (534)
+.+...-+....+.|+++.|+..|+++.+..|.+......++..+...|+.++|+.++++.... .+........++..+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly 112 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAY 112 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHH
Confidence 3344444555689999999999999999988777533338888899999999999999999821 112233333446688
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhh
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVIS 231 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 231 (534)
...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++++ .. ..|+...
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l------------------~~--~dp~~~~ 171 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATEL------------------AE--RDPTVQN 171 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHh------------------cc--cCcchHH
Confidence 99999999999999999886 667788888899999999999999999987 22 2455555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcH------HHH
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSY------DPL 305 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l 305 (534)
+..++..+...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++..+-... +.+..... ...
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 5555555555677767999999999984 336778888889999999999998887764432 12111111 111
Q ss_pred HHHH---H--hcC---CHHHHHHHHHHHHHCC--CCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhh
Q 047017 306 ISAY---C--KDG---RLDLAIEFLDYMISDG--CLPDIV----NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSS 371 (534)
Q Consensus 306 ~~~~---~--~~~---~~~~a~~~~~~~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 371 (534)
+..- . ... -.+.|+.-++.+...- .++... ...-.+.++...+++.+++..|+.+...+.+....+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1100 0 111 2456777777766531 122212 222345678889999999999999998876666678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKG-----IEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRF----------- 435 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------- 435 (534)
-..++.+|...+++++|+.++.++.... .+++......|..++...+++++|..+++++.+...
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 8899999999999999999999987642 233444467889999999999999999999987321
Q ss_pred CCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 436 RPTV---ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 436 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
.|+. ..+..++..+...|+..+|.+.++++....+ -|......+...+...|++.+|+..++.+...+|.+..+..
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 2332 2344567778899999999999999988753 48999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHhhhhh
Q 047017 513 RLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~ 531 (534)
..+.++..+++|++|..+.
T Consensus 489 ~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 489 AQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 9999999999999997765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-17 Score=151.23 Aligned_cols=471 Identities=11% Similarity=0.060 Sum_probs=371.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
-++.+...+.+.|+.++.++.+. ++.+.+.|.. +.+..-++.|.++++.+.+.-|.+..+|......--..|+.+
T Consensus 383 WKaAVelE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHH
Confidence 34455566777788888888775 3555555554 445566889999999999888999999998888888899999
Q ss_pred HHHHHHHHH----HhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHhHHHH
Q 047017 124 LANKVLDRL----RSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP--TVITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 124 ~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
...+++.+- ...|+..+...|..=...|-..|..-.+..+....+..|+.. -..||..-...|.+.+.++-|..
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 988887764 345888888888888888888898888888888888877643 33578888888888888888888
Q ss_pred HHHHh----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 198 LLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE 261 (534)
Q Consensus 198 ~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 261 (534)
+|... .....|..+.-..+|+++... ++.....|......+-..|+...|..++..+.+....
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 87765 223346667777777777665 3445666777777778889999999999999887533
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 262 PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTIL 341 (534)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (534)
+...|...+..-.....++.|..+|.+.... .|+...|..-+..-.-.+..++|..++++.++. ++.-...|..+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLG 692 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHh
Confidence 6778888888888999999999999988774 567777777777777789999999999998886 343456788888
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 047017 342 AAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVD 421 (534)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 421 (534)
+.+-+.++.+.|...|..-.+. +|..+..|..+...-.+.|+..+|..++++..-.+ +-+...|...+++-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHH
Confidence 9999999999999998877766 57788888888888888899999999999988765 447788889999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 422 EAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
.|..++.+..+. .+.+...|..-|...-+.++-......+++. ..|+.+...+...+....+++.|+++|.+++
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888765 4445667777777777777766666655554 4566777788888888889999999999999
Q ss_pred HcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 502 SMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
+.+|...++|..+-+.+...|.-++-.+|+.
T Consensus 845 k~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred ccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999888888888886666666654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-16 Score=148.51 Aligned_cols=450 Identities=15% Similarity=0.161 Sum_probs=297.4
Q ss_pred ccccCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH
Q 047017 32 SFDVKE--TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY 109 (534)
Q Consensus 32 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (534)
+..+++ .........+...|++++|..++.++++.. +.+..+|..|+.+|-..|+.+++...+-.+-..+|.+...|
T Consensus 132 ~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W 210 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELW 210 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHH
Confidence 334444 334455566777799999999999999986 77899999999999999999999999888888889999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHH
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVIT----YTILIQA 185 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~ 185 (534)
..+.....+.|+++.|.-+|.++++.. +++...+-.-+..|-+.|+...|...|.++.....+.+..- -...++.
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999884 44555555667889999999999999999998753222222 2234555
Q ss_pred HHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 047017 186 TMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES-RGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG----- 259 (534)
Q Consensus 186 ~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 259 (534)
+...++-+.|.+.++.. .. .+-..+...++.++..+.+...++.+......+....
T Consensus 290 ~~~~~~~e~a~~~le~~------------------~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 290 FITHNERERAAKALEGA------------------LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred HHHhhHHHHHHHHHHHH------------------HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 66666667777776655 22 1122344556777777777777777777766665511
Q ss_pred ----------------------CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHhcHHHHHHHHHhcCCH
Q 047017 260 ----------------------LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKG--LTPDAYSYDPLISAYCKDGRL 315 (534)
Q Consensus 260 ----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 315 (534)
..++..+ -.+.-++......+....+.......+ +..+...+..+..+|...|.+
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 1112222 012222333333444444444444444 333455677777888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 316 DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
..|+.++..+.......+...|-.++.+|...|.++.|.+.|+...... |.+......|...+.+.|+.++|.+.+..+
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 8888888887776444456677778888888888888888888877764 666777777777788888888888877774
Q ss_pred HH--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----------------------------------
Q 047017 396 LS--------KGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES----------------------------------- 432 (534)
Q Consensus 396 ~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------------- 432 (534)
.. .+..|+..........+...|+.++-..+...|+.
T Consensus 510 ~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~ 589 (895)
T KOG2076|consen 510 INPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQI 589 (895)
T ss_pred cCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHH
Confidence 42 23444444444445555555655543322222210
Q ss_pred ----------------------------CCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHH----HH
Q 047017 433 ----------------------------TRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCK-PNET----TY 477 (534)
Q Consensus 433 ----------------------------~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~ 477 (534)
.+...+ ...+..++.++.+.+++++|..+...+...... -+.. .-
T Consensus 590 ~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~ 669 (895)
T KOG2076|consen 590 IRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQ 669 (895)
T ss_pred HHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHH
Confidence 000000 012344566677777888888777777663211 1111 22
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
...+.+....+++..|..++.-++..
T Consensus 670 ~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 670 FLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 23445566777888888887777776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-18 Score=149.05 Aligned_cols=446 Identities=12% Similarity=0.073 Sum_probs=303.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------hhhH
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYG--EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD------VVTY 144 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~ 144 (534)
.....|..-|.......+|+..++-+.+.. |.....-..+...+.+.+.+.+|+++|+..+.. .|+ +...
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 345556677777888899999999888766 444455566778889999999999999988866 332 2344
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhc----------ccccC-ChH--
Q 047017 145 NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMG----------MCKKG-MVG-- 211 (534)
Q Consensus 145 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~~~-~~~-- 211 (534)
+.+...+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.++. |.... +.+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 55556678999999999999999876 5777776677777888999999999999881 11111 111
Q ss_pred ---HHH--HHHHHHHHcCCCCCHhhH----HHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 047017 212 ---QAF--QFVRSLESRGCQPDVISY----NMLLRTLLNMGK----WEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG 278 (534)
Q Consensus 212 ---~a~--~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (534)
+++ ..++.|.+.+. .+..-+ ..++.- .-.-+ .+-+++.++.-.-. +.-...-..-...+.+.|
T Consensus 358 ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHA--ELAIDLEINKAGELLKNG 433 (840)
T ss_pred HHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhcc
Confidence 111 11222222110 010000 000000 00000 01111111111100 000011112234578999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 047017 279 KTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK--DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEI 356 (534)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 356 (534)
+++.|+++++-+.+.+...-...-+.|-..+.- -.++..|...-+..+..+ .-++.....-.......|++++|.+.
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHH
Confidence 999999999988876443333333333333332 346778888887777653 33555555555556679999999999
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047017 357 FEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFR 436 (534)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 436 (534)
|.+..... ..-...+-.+.-.+...|+.++|+..|-++... +..+..++..+...|....+..+|++++-+.... ++
T Consensus 513 ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 513 YKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 99998753 222333444555678899999999999887653 3457778888889999999999999999887665 66
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 437 PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
.|+.++..|...|-+.|+-..|...+-.--+. ++.+.++..-|...|....-+++++.+|+++.-..|........++.
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 68899999999999999999999886655443 45578888888888889989999999999999999987777778889
Q ss_pred hcchHHHHHHhhhhh
Q 047017 517 TFPLLDVYKEISHLA 531 (534)
Q Consensus 517 ~~~~~~~~~~~~~~~ 531 (534)
|+...|+|+.|.+++
T Consensus 669 c~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLY 683 (840)
T ss_pred HHHhcccHHHHHHHH
Confidence 999999999998775
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-16 Score=142.12 Aligned_cols=459 Identities=12% Similarity=0.037 Sum_probs=384.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH----HcC-CCChhhHHHHHHHHH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILE----KYG-EPDVFAYNALISGFC 117 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~l~~~~~ 117 (534)
|.-++.+..-|+.|..++..+.+. ++.+..+|......--.+|+.+...++..+.. ..+ ..+...|..=+..|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 455677778899999999999775 68899999999988889999999888876643 333 667788988899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 118 KANQIELANKVLDRLRSRGFSP--DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
..|..-.+..+....+..|+.- -..+|..-...|.+.+.++-|..+|...++.- +.+...|......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHH
Confidence 9999999999999998888754 25688888999999999999999999998874 66777888888777778999999
Q ss_pred HHHHHHh----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 196 MKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 196 ~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
..+|+++ ..-..|++..|..++..+.+.... +...|...+.....+.+++.|..+|.+....
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 8888887 333458999999999988887543 7788988999999999999999999998875
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047017 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339 (534)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (534)
.|+...|..-+..-.-.++.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. ++..+..|..
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 567788887777777889999999999999886 3434567888889999999999999999877665 5667788998
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGM 419 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 419 (534)
+...--+.|..-.|..++++..-.+ |.+...|...+.+-.+.|+.+.|..++.++++. ++.+...|..-|....+.++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 9888889999999999999998876 889999999999999999999999999998876 56667788888887777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 047017 420 VDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANA 499 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 499 (534)
-......+++. ..|+++...+...+....++++|.+.|.+.++.+.. ...+|.-+.+.+...|.-++-.+++++
T Consensus 803 kTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 KTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555555443 457888888899999999999999999999998643 577888899999999999999999999
Q ss_pred HHHcCCCchHHHHHHHh
Q 047017 500 LVSMHAISRDTFKRLNR 516 (534)
Q Consensus 500 ~~~~~~~~~~~~~~l~~ 516 (534)
...-.|.....|....+
T Consensus 877 c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 877 CETAEPTHGELWQAVSK 893 (913)
T ss_pred HhccCCCCCcHHHHHhh
Confidence 99999988877776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-16 Score=135.43 Aligned_cols=451 Identities=10% Similarity=0.056 Sum_probs=340.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
|....+--..++++..|..+|++++..+ ..+...|..-+.+-.++.....|..+++.+...-|.-...|...+..--..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 3334444445778888999999998866 567888888888889999999999999999888777777888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLL 199 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 199 (534)
|++..|.++|++-.+. .|+...|++.+..=.+.+.++.|..+|++..-. .|++.+|...+..--+.|....+..+|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998877 899999999999999999999999999998764 688999998888888999999999988
Q ss_pred HHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhC
Q 047017 200 DEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN--VVTYSILISSLCRD 277 (534)
Q Consensus 200 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 277 (534)
+.+ ...+.. -..+...+.+....-.++..++.|.-+|+-.+..- +.+ ...|..+...--+-
T Consensus 231 erA-----------ie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 231 ERA-----------IEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred HHH-----------HHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHh
Confidence 876 111110 01123445555555567788899999998888762 222 33455554444455
Q ss_pred CChhHHHHHH--------HHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----
Q 047017 278 GKTEDAVDVL--------RAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI--VNYNTILA----- 342 (534)
Q Consensus 278 ~~~~~a~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~----- 342 (534)
|+........ +...+.+ +.|-.++-..+..-...|+.+...++|++++.. ++|-. ..|...+-
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHH
Confidence 6655444332 3333332 446677777888888889999999999999886 45532 12222221
Q ss_pred ---HHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 343 ---AFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMF----SALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLC 415 (534)
Q Consensus 343 ---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 415 (534)
.-....+.+.+.++|+...+. +|....||..+- ....++.+...|.+++..++. ..|...+|...|..-.
T Consensus 372 alyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHH
Confidence 123467899999999999885 566666665543 344677899999999988764 5789999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG-CKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
+.++++.+..++++.++.++ -+..+|...+..-...|+.+.|..+|+-+++.. +......|...|..=...|.++.|+
T Consensus 449 qL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 99999999999999998753 377889888888888999999999999998853 2223455667777777889999999
Q ss_pred HHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 495 ELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.+|+++++..+..+ +|...++.-.
T Consensus 528 ~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 528 ALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHhcccch-HHHhHHHHhc
Confidence 99999999887666 6666655443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-16 Score=139.26 Aligned_cols=427 Identities=15% Similarity=0.051 Sum_probs=245.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPD-VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
.....+.++|++++|+++|.+++.. .|+ +..|.....+|...|+++++.+-....++.+|.-+.++..-..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 3445677888888888888888876 455 6677778888888888888888888888887777778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 047017 121 QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLD 200 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 200 (534)
++++|+.=..-..-.+.-.|..+--.+=+.+-+ .|....++-.+.+-+|....-..+ ..|...=..+-
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi-~syf~sF~~~~------ 265 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFI-ASYFGSFHADP------ 265 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHH-HHHHhhccccc------
Confidence 888776543332222111122221111122211 222222222221113322222211 22211100000
Q ss_pred HhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH----Hh-cCCHHHHHHHHHHHHHCC---CCCC---------
Q 047017 201 EMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL----LN-MGKWEEGEKLMTEMISRG---LEPN--------- 263 (534)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~a~~~~~~~~~~~---~~~~--------- 263 (534)
......+.......+..++ .. ...+..|.+.+.+-.... ...+
T Consensus 266 --------------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 266 --------------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM 325 (606)
T ss_pred --------------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence 0000001111111122111 11 113444444443322110 0111
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047017 264 VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAA 343 (534)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (534)
..+...-...+.-.|+.-.|..-|+..++.... +...|..+..+|...++.++....|..+.+.+ +.++.+|..-..+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHH
Confidence 222222333345567777777788777776433 22236666677777777777788887777765 4466667777777
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
+.-.+++++|..-|++.+... |.+...|..+..+..+.+.+++++..|++..++ ++..+..|+.....+...+++++|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 777777888888888777765 556666777777777777788888888777765 555667777777777777888888
Q ss_pred HHHHHHHHhCCCC-----CChh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047017 424 VGLLVDMESTRFR-----PTVI--SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMEL 496 (534)
Q Consensus 424 ~~~~~~~~~~~~~-----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 496 (534)
.+.|+..++.... .++. +.-.++..- -.+++..|..++.++++.++. ....+..+...-...|+.++|+++
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888777654211 1111 111222221 236777777777777776544 456667777777777777777777
Q ss_pred HHHHHHcCCCch
Q 047017 497 ANALVSMHAISR 508 (534)
Q Consensus 497 ~~~~~~~~~~~~ 508 (534)
|++...+-....
T Consensus 560 FEksa~lArt~~ 571 (606)
T KOG0547|consen 560 FEKSAQLARTES 571 (606)
T ss_pred HHHHHHHHHhHH
Confidence 777776544333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-15 Score=138.51 Aligned_cols=318 Identities=16% Similarity=0.118 Sum_probs=241.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
.+..|..|...|-..|+.+++...+-.+--.. |.|.+.|..+.....+.|++++|.-.|.++.+..|++......-+..
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L 250 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSL 250 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 56679999999999999999999987765554 67889999999999999999999999999999999998888888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHH----HHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcC
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYN----IMIGSLCSRGMIESAFKVFDQLLRDN-CKPTVITYTILIQATMLEG 190 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 190 (534)
|-+.|+...|.+.|.++.+...+.|..-.. ..++.+...++-+.|.+.++.....+ -..+...++.++..+.+..
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~ 330 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNK 330 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhH
Confidence 999999999999999999873222222222 34566777788899999998887632 2445567888888888888
Q ss_pred CHhHHHHHHHHh-------------------------------------------cccccCChHHHHHHHHHHHHcC--C
Q 047017 191 QTDKAMKLLDEM-------------------------------------------GMCKKGMVGQAFQFVRSLESRG--C 225 (534)
Q Consensus 191 ~~~~a~~~~~~~-------------------------------------------~~~~~~~~~~a~~~~~~~~~~~--~ 225 (534)
.++.+....... ++...+..+....++..+.... +
T Consensus 331 q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~ 410 (895)
T KOG2076|consen 331 QSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWV 410 (895)
T ss_pred HHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCCh
Confidence 888888776655 2222222333333333344444 3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
..+...|..+..++...|++.+|+.+|..+......-+...|..++.+|...|.++.|.+.|+.+.... +.+......|
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~L 489 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITL 489 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhH
Confidence 335667888899999999999999999999887555567789999999999999999999999998863 3355667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISD--------GCLPDIVNYNTILAAFCKNGNADQALE 355 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~ 355 (534)
...+.+.|+.++|.++++.+... ...|+..........+.+.|+.++=+.
T Consensus 490 asl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 490 ASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88899999999999999885422 233444444555566667777665433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-15 Score=133.55 Aligned_cols=436 Identities=13% Similarity=0.053 Sum_probs=283.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcC
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSR 154 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 154 (534)
...++-+.+.|++++|++.+.+++...|..+..|.....+|...|+|++..+.-.+.++. .|+ +..+.--..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 345677889999999999999999987666889999999999999999999999998877 554 55667777889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047017 155 GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNM 234 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (534)
|++++|+.=..-.--.+.-.|..+--.+=+.+-+.|. ..+.+-+.. .+......+-.+-.-.......|.+..++.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~---nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKE---NRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcc---cCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 9999887644433222212222222222222222221 222222221 011111111111111111111121111110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR 314 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (534)
-= -.-....++.+.+...... .|......+...........-.+..-..+ .--..+.......+.-.|+
T Consensus 273 ~~---ksDa~l~~~l~~l~~~~~e-------~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 273 SD---KSDAALAEALEALEKGLEE-------GYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred Cc---cchhhHHHHHHHHHhhCch-------hHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCC
Confidence 00 0001122333333222211 22222222211111111110000000000 0001122223334556799
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISE 394 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 394 (534)
.-.|..-|+..++.... +...|-.+..+|...++.++-...|.++.+.+ |.++.+|..-...+.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987533 34447888889999999999999999999987 88999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---
Q 047017 395 MLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK--- 471 (534)
Q Consensus 395 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 471 (534)
.++.. +.+...|-.+..+..+.+++++++..|++.++. ++..+..|+.....+..++++++|.+.|+.+++....
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 98853 234566666777777899999999999999886 5667889999999999999999999999999885322
Q ss_pred --CCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 472 --PNETTY--VLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 472 --~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.+...+ ..++..- -.+++..|..++.++++.+|.+..++..|+.+-.+.|+.++|+++|+|
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 122222 2333222 348999999999999999999999999999999999999999999986
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-14 Score=126.54 Aligned_cols=443 Identities=14% Similarity=0.056 Sum_probs=337.3
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047017 58 YFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGF 137 (534)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 137 (534)
+-|+.-++.+ ..+...|..-++.-..++++..|..+|+.++..+..+...|...+.+-.+..+++.|..++++....
T Consensus 60 kefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-- 136 (677)
T KOG1915|consen 60 KEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-- 136 (677)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--
Confidence 3444444433 5566677777777778889999999999999999999999999999999999999999999999876
Q ss_pred CCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHH
Q 047017 138 SPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQF 216 (534)
Q Consensus 138 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~ 216 (534)
-|- ...|...+..=-..|++..|.++|++.... .|+..+|.+.++.-.+...++.|..++++.
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerf-------------- 200 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERF-------------- 200 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------
Confidence 343 445666666667789999999999999875 899999999999999999999999999987
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047017 217 VRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR-G-LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKG 294 (534)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (534)
. -+.|++.+|......-.++|+...+..+|+..++. | -..+...+.+++..-.++..++.|.-+|+-+++.-
T Consensus 201 ----V--~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 201 ----V--LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred ----h--eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 24589999999999999999999999999988764 1 11123455666666667788999999999988862
Q ss_pred CCCC--HhcHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 047017 295 LTPD--AYSYDPLISAYCKDGRLDLAIEF--------LDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG 364 (534)
Q Consensus 295 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 364 (534)
+.+ ...|..+...=-+-|+.....+. ++..++.+ +.|..+|-..+..-...|+.+...++|++++..
T Consensus 275 -pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan- 351 (677)
T KOG1915|consen 275 -PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN- 351 (677)
T ss_pred -CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-
Confidence 222 33444444444445664443332 34455553 668889999999888999999999999999876
Q ss_pred CCCCHh--hHHHHH--------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHH
Q 047017 365 CPPNVS--SYNTMF--------SALWSSGDKIRALGMISEMLSKGIEPDEITYNSL----ISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 365 ~~~~~~--~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~ 430 (534)
+||-.. .|...+ -.-....+.+.+.++++..++. ++-...||..+ ...-.++.+...|.+++...
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 466432 121111 1224577999999999999984 44455555444 33445788999999999988
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-Cch-
Q 047017 431 ESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA-ISR- 508 (534)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~- 508 (534)
+. ..|...+|...|..-.+.++++....++++.++.++. +..+|...+..=...|+.+.|+.+|+-+++... ..|
T Consensus 431 IG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 431 IG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred hc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 75 5888899999999999999999999999999998744 788899988888899999999999999998754 222
Q ss_pred HHHHHHHhhcchHHHHHHhhhhhc
Q 047017 509 DTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 509 ~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
-.|...+..-...+.++.+..++.
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHH
Confidence 344444455556777777766643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-14 Score=124.19 Aligned_cols=427 Identities=14% Similarity=0.209 Sum_probs=239.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--hcCCHhHH-HHHHHHHHHc----------------
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFF--QERKSNKA-VRVMEILEKY---------------- 101 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~---------------- 101 (534)
++|++ .+..|....+.-+|+.|.+.|++.+...-..++..-+ ...+.--| .+.|-.+...
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL 198 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL 198 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence 33443 5678999999999999999988877777666665322 22221111 1112111111
Q ss_pred ----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh
Q 047017 102 ----GEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVI 177 (534)
Q Consensus 102 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 177 (534)
-|....++..++.+.++--+.+.|.++|++......+.+..+||.+|.+-.-. .-.++..+|....+.||..
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchH
Confidence 14456667777777777777777777777776665566777777776543322 2256677777776777777
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 047017 178 TYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEE-GEKLMTEMI 256 (534)
Q Consensus 178 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 256 (534)
|+|+++.+..+.|+++.|.+.+ .+++.+|.+.|+.|...+|..++..+.+.++..+ +..++.++.
T Consensus 275 TfNalL~c~akfg~F~~ar~aa--------------lqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAA--------------LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHH--------------HHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 7777777777777777665543 3446666777777777777777777777666533 333333332
Q ss_pred H----CCCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCH---hcHHHHHHHHHhcCCHHHHHHH
Q 047017 257 S----RGLEP----NVVTYSILISSLCRDGKTEDAVDVLRAAKEKG----LTPDA---YSYDPLISAYCKDGRLDLAIEF 321 (534)
Q Consensus 257 ~----~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~ 321 (534)
. ..+.| +...|...+..|....|.+-|.++..-+.... +.|+. .-|..+..+.++....+.-..+
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222 23345555666666777777766665554321 12221 1244555666667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 322 LDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIE 401 (534)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (534)
|+.|+..-+.|+..+...++++..-.|.++-.-++|.+++..|..-+......++..+++ ....
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~----------------~k~h 484 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR----------------DKLH 484 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc----------------CCCC
Confidence 777776666667777777777776677777777777776665533222222222222222 1112
Q ss_pred CCHH---HHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC
Q 047017 402 PDEI---TYNSLISCLCRDGMVDEA-VGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG----CKPN 473 (534)
Q Consensus 402 ~~~~---~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 473 (534)
|+.. -+.....-|+ -++.++ ...-.++... .......+.++-.+.+.|..++|.+++.-..+.+ ..|.
T Consensus 485 p~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 485 PLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 2111 1111111110 011111 1112233322 2334445556666667777777777777665432 1233
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 474 ETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
......++..-...+++..|...++-+...+..
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 333445556666666777777777777665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-14 Score=125.27 Aligned_cols=291 Identities=13% Similarity=0.077 Sum_probs=223.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhCCChh-HHHH
Q 047017 209 MVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE--PNVVTYSILISSLCRDGKTE-DAVD 285 (534)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~-~a~~ 285 (534)
..+++++-.......|.+.+...-+....+.....|+++|+.+|+++.+..+- -|..+|+.++..-....... -|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 44455555555577777777777777777888899999999999999887311 15667777764432222211 1222
Q ss_pred HHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 286 VLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
+++ + . +-.+.+...+++-|.-.++.++|...|++.++.+ +.....|..++.-|....+...|+..|+.+.+..
T Consensus 322 v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~- 394 (559)
T KOG1155|consen 322 VSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN- 394 (559)
T ss_pred HHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-
Confidence 211 1 1 2345677778888889999999999999999986 4466789999999999999999999999999986
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
|.|-..|-.+.++|.-.+.+.-|+-+|+++... .+.|...|.+|+.+|.+.++.++|++.|.+....|-. +...+..|
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L 472 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL 472 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence 889999999999999999999999999999886 3557899999999999999999999999999887533 66788899
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 446 ILGFCKTRRINESIEVLAAMFE----KGCKPN--ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
+..|-+.++.++|...+++.++ .|...+ .....-|..-+.+.+++++|..+.......++...
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 9999999999999999888876 233322 22233455667789999999998888887755444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-14 Score=120.89 Aligned_cols=389 Identities=17% Similarity=0.219 Sum_probs=252.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHHHHh--cCCHHHH-HHHHHHHHhCC-------------
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISGFCK--ANQIELA-NKVLDRLRSRG------------- 136 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~--~g~~~~a-~~~~~~~~~~~------------- 136 (534)
+=+.+++ .+.+|..+++.-+|+.|...+ +.++.+-..+.+.-+- ..++.-| .+.|-.|...|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3455555 467789999999999999888 6666665555544322 2221111 11222222211
Q ss_pred ------CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCCh
Q 047017 137 ------FSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMV 210 (534)
Q Consensus 137 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 210 (534)
.+.+..++..+|.++++--..+.|.++|++......+.+..+||.++.+-.-.-+ .+
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~------------- 259 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KK------------- 259 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HH-------------
Confidence 1335667788888888887788888888877766567777788877765322111 33
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH-HHH
Q 047017 211 GQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEG----EKLMTEMISRGLEPNVVTYSILISSLCRDGKTED-AVD 285 (534)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~ 285 (534)
++.+|......||..|+|.++.+..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..
T Consensus 260 -----Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 260 -----LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred -----HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 344457778899999999999999999987764 5677888889999999999999998888887754 555
Q ss_pred HHHHHHHC----CCC----CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhCCCH
Q 047017 286 VLRAAKEK----GLT----PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG----CLPD---IVNYNTILAAFCKNGNA 350 (534)
Q Consensus 286 ~~~~~~~~----~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~ 350 (534)
++..+... .+. .+...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 55555432 222 234456667788888888888888776654321 1222 23456677777888888
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
+.-...|+.+.-.-+-|+..+...++++....+.++-.-++|..+...|..-+.... ++++..+
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLL 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHH
Confidence 888999999887767788888888999888888888888888888776533222222 2233333
Q ss_pred HhCCCCCChh---hHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 431 ESTRFRPTVI---SYNIIILGFCKTRRINESI-EVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 431 ~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.+....|+.. -+.....-|+ -++.++. ..-.++.+...+ ....+.++-.+.+.|..++|.+++.-+.+.+.
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 3333333322 2222221111 1233332 234455555544 45566667778899999999999998876543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-14 Score=133.40 Aligned_cols=284 Identities=12% Similarity=0.065 Sum_probs=218.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhCCChhHH
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVIS-YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYS--ILISSLCRDGKTEDA 283 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 283 (534)
.|+++.|.+.+....... +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 455555555554434431 22333 333345558999999999999999876 45543332 346788899999999
Q ss_pred HHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhCCCHHHHHHH
Q 047017 284 VDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV-------NYNTILAAFCKNGNADQALEI 356 (534)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~ 356 (534)
...++.+.+.. +-++.....+...|.+.|+++.|..++..+.+.+..++.. ++..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999875 4477888999999999999999999999999876443221 223333334445566777778
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047017 357 FEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFR 436 (534)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 436 (534)
++.+.+. .+.++.....++..+...|+.++|..++++..+. +++.... ++.+....++.+++.+.++...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 8877654 3678889999999999999999999999999884 4555332 2333445699999999999998763 4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 437 PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
.|...+..+...|...|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.++|++.+..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46677889999999999999999999999986 688899999999999999999999999998764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-13 Score=120.09 Aligned_cols=474 Identities=12% Similarity=0.090 Sum_probs=333.9
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
..+..-+..+++-+..+.++.-|+-+-+++...+ .|+.....+++++.-.|+++.|..+...-. ....+........
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~-le~~d~~cryL~~ 89 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYK-LEKRDIACRYLAA 89 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhh-hhhhhHHHHHHHH
Confidence 4567788999999999999999999999887654 566667778899999999999888776542 2267888888889
Q ss_pred HHHHhcCCHHHHHHHHHHH----HhC---------CCCCChhh----HHH-------HHHHHHcCCCHHHHHHHHHHHHh
Q 047017 114 SGFCKANQIELANKVLDRL----RSR---------GFSPDVVT----YNI-------MIGSLCSRGMIESAFKVFDQLLR 169 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~----~~~---------~~~~~~~~----~~~-------l~~~~~~~g~~~~a~~~~~~~~~ 169 (534)
.++.+..+++.|..++... ... .+.+|... -+. -...|....+.++|...|.+.+.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 9999999999999998822 110 01111111 111 11334455667888888888765
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc-ccCChHHHHHHHHHHH-----------------HcCCCCCHhh
Q 047017 170 DNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC-KKGMVGQAFQFVRSLE-----------------SRGCQPDVIS 231 (534)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~ 231 (534)
.. ...-..+..++....- ..++-..++..+.+. ..+...+-.+.+-++. -.+..-+...
T Consensus 170 ~D-~~c~Ea~~~lvs~~ml--t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 170 AD-AKCFEAFEKLVSAHML--TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred cc-hhhHHHHHHHHHHHhc--chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 43 1122233333332211 111222222221111 0111111111111100 0112234455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
...-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+. .|..+.+|..++--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 5556667888999999999999998874 556666777777888899888877777777775 35567788889888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047017 312 DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGM 391 (534)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 391 (534)
.|+.++|...|.+....+ +.-...|..++..|.-.+..+.|+..|..+.+. ++.....+..+..-|.+.++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 999999999999987764 223567889999999999999999999988776 243444455566678889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 392 ISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST--RFR----PTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
|.++... .+.|+...+.+.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+.+++|+..+++.
T Consensus 403 f~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 9998875 3556778888887777889999999999887632 011 12446788999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 466 FEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 466 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
+.... .+..++..++-.+...|+++.|.+.|.+++-+.|.+..+-..|..+..
T Consensus 482 L~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 482 LLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 98754 488999999999999999999999999999999998766666665443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-14 Score=121.23 Aligned_cols=445 Identities=14% Similarity=0.118 Sum_probs=304.4
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+.+..-..+.+.++....++.|.-.++.... .-..|..+...+. .|.-+.-...- .... + ...+....+
T Consensus 76 ~~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~L-a~~kk~~e~~~-~~l~--~--~~~~~~~~~ 144 (559)
T KOG1155|consen 76 VLEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYL-AGEKKSEEEMA-ELLG--R--LESFSRINS 144 (559)
T ss_pred hhhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHH-hhhHHHHHHHH-Hhhc--c--chhhhhhhh
Confidence 4555566688889999999999888776543 2222333322222 22222111111 1111 0 011111111
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
.+... .+.++. ...+...|...+-.....+.+.|....|...|......- |..-.+|..|.... .+.+.
T Consensus 145 ~l~~L------~~~le~-~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~ 213 (559)
T KOG1155|consen 145 ELIEL------NKPLES-KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI 213 (559)
T ss_pred HHHHH------hhHHHH-HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH
Confidence 11111 111111 122334466666666677788899999999998887653 55556666665543 22222
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISY--NMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILIS 272 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 272 (534)
+..+. .+.+.+...+ -.+..++......+++..-.+.....|++-+...-+..+.
T Consensus 214 ~~~l~-----------------------~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~ 270 (559)
T KOG1155|consen 214 LSILV-----------------------VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAA 270 (559)
T ss_pred HHHHH-----------------------hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 21111 1112221111 2234556666688888888888888888777777777777
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCC--CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 047017 273 SLCRDGKTEDAVDVLRAAKEKGLT--PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (534)
+.....|+++|+.+|+++.++++- .|..+|..++ |.+..+-..+ -+-+.....+ .-.+.|...+++.|.-.++.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhH
Confidence 778899999999999999987321 2455666655 3333322221 1112222221 33567788889999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
++|+..|+.+.+.+ |.....|+.+.+-|...++...|..-++.+.+.+ +-|...|..++.+|.-.+...=|+-+|++.
T Consensus 347 EKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 347 EKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred HHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 99999999999986 6777889999999999999999999999999864 557889999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-------c
Q 047017 431 ESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS-------M 503 (534)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 503 (534)
.... +.|...|..|..+|.+.++.++|++.|.+++..| ..+...+..|++.+-+.++..+|...|++.++ .
T Consensus 425 ~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~ 502 (559)
T KOG1155|consen 425 LELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI 502 (559)
T ss_pred HhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 8863 4478999999999999999999999999999876 34678899999999999999999999999988 2
Q ss_pred CCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 504 HAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
.+....+...|+..+...++|++|....+
T Consensus 503 ~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 503 DDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 33334566678999999999999987544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=149.06 Aligned_cols=258 Identities=17% Similarity=0.212 Sum_probs=59.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC
Q 047017 236 LRTLLNMGKWEEGEKLMTEMISRG-LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR 314 (534)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (534)
...+.+.|++++|+++++...... .+.+...|..+.......++++.|...++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553332221 1122333333333444445555555555555443221 33333333333 34455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG-CPPNVSSYNTMFSALWSSGDKIRALGMIS 393 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (534)
+++|..++....+. .+++..+...+..+...++++++..+++.+.... .+.+...|..++..+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555444443332 1233334444444445555555555544443221 12334444444444455555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047017 394 EMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
++++.. +.+......++..+...|+.+++.+++....+.. +.++..+..+..++...|++++|+.++++..+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 444431 1123444444444444454444444444443321 2233344444444444555555555555444432 124
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 474 ETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
+.+...++.++...|+.++|.++.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444444555555555554444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-14 Score=131.47 Aligned_cols=291 Identities=12% Similarity=0.021 Sum_probs=206.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhCCCh
Q 047017 204 MCKKGMVGQAFQFVRSLESRGCQPDV-ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV--TYSILISSLCRDGKT 280 (534)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 280 (534)
....|+++.|.+.+.+..+. .|++ ..+-....+....|+++.|.+.+.+..+.. |+.. ........+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 34455666666666554554 3433 344455677888999999999999988763 4443 344457888899999
Q ss_pred hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhCCCHHHHHHHH
Q 047017 281 EDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAF---CKNGNADQALEIF 357 (534)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~ 357 (534)
+.|...++.+.+.. +-++.....+...+...|+++.|.+.+..+.+.+..+.......-..++ ...+..+.....+
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999875 3367788899999999999999999999999886443322211111111 2222223233344
Q ss_pred HHHhhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 358 EKLSDVG---CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEIT--Y-NSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 358 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
..+.+.. .+.++..+..++..+...|+.++|...+++..+.. |+... + ..........++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 4443321 13588889999999999999999999999999863 33321 1 111122234578888999998887
Q ss_pred hCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 432 STRFRPTV--ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 432 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
+.. +.++ .....+.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 752 2244 566688999999999999999999644444478888888999999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-14 Score=130.35 Aligned_cols=130 Identities=13% Similarity=-0.011 Sum_probs=69.2
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH--hhH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVN---YNTILAAFCKNGNADQALEIFEKLSDVGCPPNV--SSY 372 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~ 372 (534)
++..+..++..+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...+.. |.++ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 44555555555566666666666666555542 22211 0111111222345555666666555542 4444 455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 373 NTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
..+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666666666666666666663222223556655666666666666666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-17 Score=144.10 Aligned_cols=259 Identities=15% Similarity=0.125 Sum_probs=117.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 047017 269 ILISSLCRDGKTEDAVDVLRAAKEKG-LTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKN 347 (534)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (534)
.+...+...|++++|+++++...... .+.+...+..+.......++.+.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 56788889999999999997655443 23455566667777888999999999999998875 3356667777776 689
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047017 348 GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKG-IEPDEITYNSLISCLCRDGMVDEAVGL 426 (534)
Q Consensus 348 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 426 (534)
+++++|..+++...+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887664 4577788888999999999999999999987542 345778888999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 427 LVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
+++..+.. +.+......++..+...|+.+++.++++...+.. +.|+..+..++.++...|++++|..+++++.+.+|.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99999863 2257788899999999999999999998888764 445667889999999999999999999999999999
Q ss_pred chHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 507 SRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 507 ~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
++..+..++.++...|+.++|.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999998754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-13 Score=111.79 Aligned_cols=436 Identities=11% Similarity=0.082 Sum_probs=228.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
+..+....++..|+.+++-....+-.....+-..+..++.+.|++++|...+..+...+.++...+..++-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 67788889999999999887654433333455567788899999999999999998877777888888888888889999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh-
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM- 202 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~- 202 (534)
+|..+-.+..+ ++-....++..-.+.|+-++-....+.+.+. ..--..|+......-.+.+|++++.++
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887666432 3334445555556666666655555554321 122334444444445566666666554
Q ss_pred ---------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047017 203 ---------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY 267 (534)
Q Consensus 203 ---------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 267 (534)
++.+..-++-+.++++-.... ++.++...|..+....+.=+-..|.+-.+.+...+.. .
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---- 252 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---- 252 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c----
Confidence 222222222222222222222 2222233333322222221112222222222221100 0
Q ss_pred HHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 268 SILISSLCR-----DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILA 342 (534)
Q Consensus 268 ~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (534)
...+.-.++ ..+-+.|++++--+.+. -+.....++--|.+.++..+|..+.+.+... ++.-|-.-..
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgv 324 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGV 324 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHH
Confidence 001111111 12234444444433332 1223334555567777777777776654321 2222222222
Q ss_pred HHHhCC-------CHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 343 AFCKNG-------NADQALEIFEKLSDVGCPPNV-SSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL 414 (534)
Q Consensus 343 ~~~~~~-------~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 414 (534)
.+...| ...-|.+.|+-.-+++...|. .--..++..+.-..++++++.+++.+..--...|...+ .+..++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHH
Confidence 222222 233444444444333322222 12334444445555677777777766654323333333 456667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNET-TYVLLIEGIGYGGWRAEA 493 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A 493 (534)
+..|++.+|.++|-++....++.+..-...|+++|.+.++++.|.+++-++ +.+.+.. ....+.+-|.+.|.+=-|
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766654444433333345667777777777776655444 2222222 233445667777777777
Q ss_pred HHHHHHHHHcCCCc
Q 047017 494 MELANALVSMHAIS 507 (534)
Q Consensus 494 ~~~~~~~~~~~~~~ 507 (534)
-+.|+.+...+|.+
T Consensus 481 aKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 481 AKAFDELEILDPTP 494 (557)
T ss_pred HHhhhHHHccCCCc
Confidence 77777777666643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-13 Score=127.72 Aligned_cols=285 Identities=14% Similarity=0.071 Sum_probs=169.4
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHcCCCHHHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYN--IMIGSLCSRGMIESA 160 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 160 (534)
...|+++.|.+.+.......+.....+.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 44699999998888766653322333444455668999999999999999876 56654333 346788899999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCH-------hhHH
Q 047017 161 FKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV-------ISYN 233 (534)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~ 233 (534)
...++++.+.+ |.++.....+...|.+.|++++|.+++..+ .+....++. ..|.
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l------------------~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSM------------------AKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHH------------------HHcCCCCHHHHHHHHHHHHH
Confidence 99999999886 778888999999999999999999888876 333222111 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcC
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDG 313 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (534)
.++.......+.+...++++.+... .+.++.....++..+...|+.++|...+++..+. ++++... ++.+....+
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~ 308 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTN 308 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCC
Confidence 2222222333334444444443222 1224445555555555556666665555555542 2233211 122222335
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 314 RLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMIS 393 (534)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (534)
+.+++.+..+...+.. +.|+.....+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|..+++
T Consensus 309 ~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 309 NPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred ChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555442 334444555555555555555555555555543 3455555555555555555555555555
Q ss_pred HHH
Q 047017 394 EML 396 (534)
Q Consensus 394 ~~~ 396 (534)
+..
T Consensus 386 ~~l 388 (398)
T PRK10747 386 DGL 388 (398)
T ss_pred HHH
Confidence 443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.2e-14 Score=124.75 Aligned_cols=451 Identities=11% Similarity=0.030 Sum_probs=313.3
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS 150 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (534)
+..-+..+.+-+..+.++..|.-+-+++.... .++.....+++++.-.|++++|..++..-.-. ..|..+......+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 34455566666677788888988888888775 66666777889999999999998887765433 4578888888999
Q ss_pred HHcCCCHHHHHHHHHHHHhC--CCCCCHhh---------------HHHH-------HHHHHhcCCHhHHHHHHHHhcccc
Q 047017 151 LCSRGMIESAFKVFDQLLRD--NCKPTVIT---------------YTIL-------IQATMLEGQTDKAMKLLDEMGMCK 206 (534)
Q Consensus 151 ~~~~g~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~ 206 (534)
+.+..+++.|..++...... .+.-+..+ -+.- ...|....+.++|...|.+.....
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 99999999999998832110 00000000 0001 122334445556666655542222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HH-hcC-CHHHHHHHHHHHHH----------------CCCCCChhhH
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVISYNMLLRT-LL-NMG-KWEEGEKLMTEMIS----------------RGLEPNVVTY 267 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~-~~~~a~~~~~~~~~----------------~~~~~~~~~~ 267 (534)
...++ .++.+.....-.....|..+... +. -.+ +.+....+|+.... .+..-+....
T Consensus 172 ~~c~E----a~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 172 AKCFE----AFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred hhhHH----HHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 21111 12222221111111112111110 00 111 11112222221100 0122344555
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 047017 268 SILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKN 347 (534)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (534)
..-..-+...+++.+..++.+...+.. ++....+..-+.++...|+..+-..+-.++++. .|..+.+|-+++..|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 566677788899999999999999874 556667777777888999998888888888887 466788999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047017 348 GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLL 427 (534)
Q Consensus 348 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 427 (534)
|+.++|++.|.+..... +.=...|..+...+...+..++|+..+..+.+. ++-...-+-.+..-|.+.++.+.|.++|
T Consensus 326 ~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998764 445578999999999999999999999888764 2222222334455678899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 428 VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK--GCK----PNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
....... +.|+...+-+.......+.+.+|..+|+..+.. .+. --..+++.|+.+|.+.+.+++|+..+++.+
T Consensus 404 ~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 9988752 446778888888888889999999999988741 111 134568899999999999999999999999
Q ss_pred HcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 502 SMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
...|.+++++..++.+|..+|+.+.|++.+.|
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999998865
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-11 Score=108.70 Aligned_cols=483 Identities=13% Similarity=0.120 Sum_probs=274.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVAN-GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+..|...++.+..+|+...-+..|++++.. .+.....+|...+......+-++-+..+++..++.. +..-...+..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P~~~eeyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---PEAREEYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 445677777788899999999999987763 344566778888888888888888999999888764 3345666777
Q ss_pred HHhcCCHHHHHHHHHHHHhCC------CCCChh--------------------------------------hHHHHHHHH
Q 047017 116 FCKANQIELANKVLDRLRSRG------FSPDVV--------------------------------------TYNIMIGSL 151 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~--------------------------------------~~~~l~~~~ 151 (534)
+++.+++++|.+.+...+... .+.+.. .|.+|+..|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 888888888887777664321 011122 356666666
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----------------C------HhHHHHHHHHh-------
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG----------------Q------TDKAMKLLDEM------- 202 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~------~~~a~~~~~~~------- 202 (534)
.+.|.+++|..+|++.++. ..+..-|..+.++|..-. + ++-....|+.+
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 6666666666666666543 222223333333332111 0 11111112111
Q ss_pred -------------------cccccCChHHHHHHHHHHHHcCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 203 -------------------GMCKKGMVGQAFQFVRSLESRGCQP------DVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 203 -------------------~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
.-...|+..+....+.++... +.| -...|..+...|-.+|+.+.|..+|++..+
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 223344455555555554432 122 123466667777777777777777777765
Q ss_pred CCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-----------------CHhcHHHHHHHHHhcCCHHH
Q 047017 258 RGLEPN---VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTP-----------------DAYSYDPLISAYCKDGRLDL 317 (534)
Q Consensus 258 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~ 317 (534)
...+-- ..+|-..+..-.+..+++.|..+++.+....-.| +...|...++.--..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 532211 2344444445556667777777776655321110 12233334444445667777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHh---cCCHHHHHHHHH
Q 047017 318 AIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV-SSYNTMFSALWS---SGDKIRALGMIS 393 (534)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~ 393 (534)
...+++++++..+. .+......+..+.....++++.++|++-+..--.|+. ..|+..+.-+.+ ....+.|..+|+
T Consensus 496 tk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 77777777766433 3443333444455566677777777776655323443 355555444432 236788888888
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 394 EMLSKGIEPDEI--TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 394 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
++++ +.+|... .|......-.+.|-...|++++++.... +++. ...|+..|.--...=-+.....+++++++.
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~- 651 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES- 651 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-
Confidence 8888 4555432 2222223333567778888888887553 3332 345666665444433345556777777775
Q ss_pred CCCCHHHHH---HHHHHHHccCCHHHHHHHHHHHHHc-CCC-chHH---HHHHHhhcchHHHHHHhhhh
Q 047017 470 CKPNETTYV---LLIEGIGYGGWRAEAMELANALVSM-HAI-SRDT---FKRLNRTFPLLDVYKEISHL 530 (534)
Q Consensus 470 ~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~---~~~l~~~~~~~~~~~~~~~~ 530 (534)
-|+...-. .....=.+.|..+.|+.+|.-..+. +|. +++. |...-.-+....-++|+.++
T Consensus 652 -Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRi 719 (835)
T KOG2047|consen 652 -LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRI 719 (835)
T ss_pred -CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34443333 3344455778888998888888775 332 2233 33333333334445555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-13 Score=114.67 Aligned_cols=316 Identities=14% Similarity=0.119 Sum_probs=234.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhCCChhHHHHH
Q 047017 210 VGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN---VVTYSILISSLCRDGKTEDAVDV 286 (534)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 286 (534)
.++|..+|.+|.+.. +.+..+..+|.+.|.+.|..+.|+++...+....--+. ......|..-|...|-++.|+.+
T Consensus 51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 334444444445532 33556667889999999999999999999887521111 22455677889999999999999
Q ss_pred HHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 287 LRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI----VNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+.. ..|..+...+....+.+.|..++.++..
T Consensus 130 f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 130 FNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 999988642 35567889999999999999999999999887544332 3466677777788899999999999988
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 047017 363 VGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISY 442 (534)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 442 (534)
.+ |..+..-..+...+...|+++.|.+.++...+.+..--..+...|..+|...|+.++...++.++.+.. +....-
T Consensus 209 a~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~ 285 (389)
T COG2956 209 AD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAE 285 (389)
T ss_pred hC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHH
Confidence 75 667777778889999999999999999999998655556788899999999999999999999998863 344444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCC---------chHH
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGY---GGWRAEAMELANALVSMHAI---------SRDT 510 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~---------~~~~ 510 (534)
..+...-....-.+.|..++.+-+.. .|+...+..++..... .|...+-...+..|+..... ..-.
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~ 363 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFT 363 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCc
Confidence 45555555556667777777666665 6888888888887653 34566666666666653322 1123
Q ss_pred HHHHHhhcchHHHHHHhhhhhc
Q 047017 511 FKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 511 ~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
-..+-+..++++.|+....+.+
T Consensus 364 a~~l~W~CPsC~~W~TikPir~ 385 (389)
T COG2956 364 AHTLYWHCPSCRAWETIKPIRG 385 (389)
T ss_pred ceeeeeeCCCcccccccCCccc
Confidence 3346677788888887766554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-15 Score=133.74 Aligned_cols=292 Identities=12% Similarity=0.034 Sum_probs=176.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhCCChhHHHH
Q 047017 208 GMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL--EPNVVTYSILISSLCRDGKTEDAVD 285 (534)
Q Consensus 208 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (534)
-+..+|+..|.++... +.-+..+...+..+|...+++++|.++|+.+.+... --+..+|.+.+--+ .+.-+--.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHH
Confidence 3566667777664333 233345556667777777777777777777766521 01344555544332 12112222
Q ss_pred HHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 286 VLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
+-+.+.+.. +..+.+|..++.+|.-.++.+.|++.|+++++.+ +....+|..+..-+.....+|.|...|+.+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 222333322 3356677777777777777777777777777653 2255666666666777777777777777776543
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
+-+-.+|-.+...|.++++++.|+-.|+++.+.+ +-+......++..+.+.|+.++|+.+++++...+.. |+..--.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 3344445556666777777777777777776643 224455556666667777777777777777665333 33333344
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
+..+...+++++|+..++++.+.- +-+..++..+++.|.+.|+.+.|+..|--+.+++|....
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 555666677777777777776652 224555666677777777777777777777777766554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-14 Score=129.74 Aligned_cols=280 Identities=11% Similarity=0.053 Sum_probs=225.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHhcHHHHHHHHHhcCCHHHHH
Q 047017 242 MGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL--TPDAYSYDPLISAYCKDGRLDLAI 319 (534)
Q Consensus 242 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 319 (534)
.-+..+|+..|...... +.-.......+..+|...+++++|.++|+.+.+... .-+..+|...+.-+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34578999999995554 233456778899999999999999999999987521 1255667776654432 2223
Q ss_pred HHH-HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 320 EFL-DYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 320 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
..+ +.+.+.. +..+.+|..++.+|.-+++.+.|++.|+++.... |....+|+.+..=+....++|.|...|+.++..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 333 4444443 5678999999999999999999999999999875 447788888888899999999999999998864
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047017 399 GIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTY 477 (534)
Q Consensus 399 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 477 (534)
.| +-..|..++..|.+.++++.|+-.|+++.+.++. +.+....+...+.+.|+.++|+.+++++...+.. |+..-
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 33 3355667888899999999999999999986433 6677778888999999999999999999988755 55555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
..-+..+...+++++|...++++.+.-|....++..++++|...|+.+.|...++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 5567778889999999999999999999999999999999999999998876653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-13 Score=110.05 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=72.7
Q ss_pred hcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcCCCHHHH
Q 047017 84 QERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD---VVTYNIMIGSLCSRGMIESA 160 (534)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a 160 (534)
-.++.++|..+|-++.+.++....+...|...|.+.|..+.|+.+.+.+.+..--+. ......|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 346677777777777776676777777777777777777777777777765411110 12334455666677777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 161 FKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+.+|..+.+.+ ..-......|+..|-...++++|++.-+++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L 167 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERL 167 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777766544 333445555556665555555555554443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-12 Score=110.32 Aligned_cols=289 Identities=14% Similarity=0.114 Sum_probs=231.2
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHH
Q 047017 205 CKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
...|++.+|.+++.+..+.+-. ....|..-+.+..+.|+.+.+-.++.++.+....++..............|+++.|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 3456666666666665665433 344566667788889999999999999988744556677778888899999999999
Q ss_pred HHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhCCCHHHHHHHH
Q 047017 285 DVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV-------NYNTILAAFCKNGNADQALEIF 357 (534)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~ 357 (534)
.-+.++.+.+.. .+........+|.+.|++.....++..+.+.+.-.+.. ++..++.-....+..+.-...|
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999987643 67788889999999999999999999999988766653 4555666555566666666788
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047017 358 EKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRP 437 (534)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (534)
+..... ...++..-..++.-+.++|+.++|.++..+..+.+..|+.. . .-.+.+-++...-.+..++-.+. .+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 877665 36678888899999999999999999999999987777622 2 22455778888888888777655 234
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
++..+..|...|.+.+.|.+|...|+..++. .|+..+|..+..++.+.|+..+|.+..++.+..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5678889999999999999999999988876 789999999999999999999999999988753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-11 Score=103.46 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=222.7
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcH
Q 047017 224 GCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSY 302 (534)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (534)
-.+.|......+...+...|+.++|+..|+..... .|+ ..........+...|+.+....+...+.... .-....|
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 35667888999999999999999999999998765 332 3333344445678899998888887776542 1133334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047017 303 DPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS 382 (534)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (534)
..-+.......+++.|+.+-++.++.+ +.+...+-.-...+...++.++|.-.|+.+.... |.+...|..++.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 344445566888999999999988875 4466677777788899999999999999998875 78899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHH
Q 047017 383 GDKIRALGMISEMLSKGIEPDEITYNSLI-SCLC-RDGMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESI 459 (534)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 459 (534)
|...+|..+-+..... ++.+..+...+. ..+. ...--++|.+++++.... .|+ ....+.+...|...|..+.++
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 9999999888777664 455667776663 3332 223347899999887764 555 445677888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 460 EVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
.++++.+.. .||......|.+.+...+.+++|...|..+++.+|.+..+...+-+.
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 999999875 68999999999999999999999999999999999998777766443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-11 Score=109.25 Aligned_cols=437 Identities=13% Similarity=0.085 Sum_probs=257.7
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+.+..+..-+--+...+++...++..+.+++. .+...++....+-.+...|+.++|..........++.+...|..+.-
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 5 PKENALFRRALKCYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 33444444444566788999999999999884 35566676666667778899999999999999888889999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
.+....++++|++.|..+...+ +.|...|.-+.-.-.+.++++.....-..+.+.. +.....|..++.++.-.|++..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 4467788877777788899988888888887763 4455678888888888999999
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcC-CCCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCChh-h
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRG-CQPDVISYNMLL------RTLLNMGKWEEGEKLMTEMISRGLEPNVV-T 266 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 266 (534)
|..+++.. .+.. ..|+...+.... ......|.++.|++.+...... ..|.. .
T Consensus 162 A~~il~ef------------------~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~ 221 (700)
T KOG1156|consen 162 ALEILEEF------------------EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAF 221 (700)
T ss_pred HHHHHHHH------------------HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHH
Confidence 98888775 2211 234444443322 2345567777777766554433 11222 2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH-HHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 267 YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL-ISAYCKDGRLDLAI-EFLDYMISDGCLPDIVNYNTILAAF 344 (534)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (534)
-..-...+.+.++.++|..++..++..+ ||...|... ..++.+-.+.-++. .+|....+. .|.......+-...
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSV 297 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHH
Confidence 2334455677788888888888887763 444444433 33333222323333 455544432 22221111111111
Q ss_pred HhCCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--
Q 047017 345 CKNGNA-DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS----KG----------IEPDEITY-- 407 (534)
Q Consensus 345 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~-- 407 (534)
....++ +..-.++....+.|+|+- +..+...|-.....+-..++...+.. .| -+|....|
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 111222 233344455555554432 22222222211111111111111110 00 13333322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGY 486 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 486 (534)
..++..+-+.|+++.|..+++..+++ .|+ +..|..-.+.+...|++++|..+++++.+.+ .+|..+-..-++-..+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 33444555667777777777666654 344 2234344456666677777777777766655 2344444455555666
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 047017 487 GGWRAEAMELANALVSMH 504 (534)
Q Consensus 487 ~g~~~~A~~~~~~~~~~~ 504 (534)
.+..++|.++..+..+.+
T Consensus 452 An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ccccHHHHHHHHHhhhcc
Confidence 666777776666666655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-12 Score=109.86 Aligned_cols=287 Identities=15% Similarity=0.150 Sum_probs=187.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHH
Q 047017 154 RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYN 233 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (534)
.|+|.+|+++..+..+.+ +.....|..-+++.-..|+.+.+-.++.++ .+....++....-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~ea------------------ae~~~~~~l~v~l 157 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEA------------------AELAGDDTLAVEL 157 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH------------------hccCCCchHHHHH
Confidence 577777777777766665 333445555556666666666666666654 3322233444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-------cHHHHH
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAY-------SYDPLI 306 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~ 306 (534)
.........|++..|..-+.++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+.. ++..++
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 5666677777777777777777766433 55666777777777777777777777777776554433 334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 047017 307 SAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKI 386 (534)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 386 (534)
+-....+..+.-...++..... ...++..-..++.-+.++|+.++|.++..+..+.+..|. ......+.+.++..
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~ 311 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPE 311 (400)
T ss_pred HHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCch
Confidence 4444444444444455555443 244566677777778888888888888888777654443 22223445666777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 387 RALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
.-++..+...+. .+.++..+..|+..|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+..++.+
T Consensus 312 ~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 312 PLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 777777666654 3445577778888888888888888888877664 6788888888888888888888888887776
Q ss_pred Hc
Q 047017 467 EK 468 (534)
Q Consensus 467 ~~ 468 (534)
..
T Consensus 389 ~~ 390 (400)
T COG3071 389 LL 390 (400)
T ss_pred HH
Confidence 53
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-11 Score=109.30 Aligned_cols=423 Identities=13% Similarity=0.127 Sum_probs=289.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
+..++.+ ...+++...++..+.+.+..|....+.....-.+...|+.++|........... ..+.++|+.+.-.+...
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhh
Confidence 3444444 467899999999999999778888888888888888999999999988887754 33778999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047017 155 GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNM 234 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (534)
.++++|++.|..+...+ +.|...+..+.-.-++.|+++.....-... ... .+.....|..
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~L------------------Lql-~~~~ra~w~~ 148 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQL------------------LQL-RPSQRASWIG 148 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHH------------------HHh-hhhhHHHHHH
Confidence 99999999999999987 778888988888878888888776665544 222 1224556788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHH------HHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRG-LEPNVVTYSILI------SSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS 307 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 307 (534)
++.++.-.|++..|..+++...+.. ..|+...+.... ......|..+.|.+.+..-... +......-..-..
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHH
Confidence 8888888999999999999988764 245555544322 2345678888888877665443 1112222334566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHH-HHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-
Q 047017 308 AYCKDGRLDLAIEFLDYMISDGCLPDIVNYN-TILAAFCKNGNADQAL-EIFEKLSDVGCPPNVSSYNTMFSALWSSGD- 384 (534)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 384 (534)
.+.+.+++++|..++..++..+ ||...|. .+..++.+-.+..++. .+|....+. +|-...-..+--......+
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchh
Confidence 7889999999999999999874 5555444 4444443333444444 666666553 2222222222111222223
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hCC----------CCCChhhHH--H
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME--------STR----------FRPTVISYN--I 444 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~----------~~~~~~~~~--~ 444 (534)
.+..-.++..+.+.|+++-. ..+...|-.-...+ ++++.. ..| -+|....|. .
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred HHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 33444566777787776543 33333332222111 222221 110 145555454 4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
++..+-..|+++.|..+++.+++. .|+ .+.|..-++.+.+.|+.++|..+++++.+.+..+...-..-++.....++
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 677788999999999999999876 444 45566667899999999999999999999887666555466777777888
Q ss_pred HHHhhhhhcc
Q 047017 524 YKEISHLATK 533 (534)
Q Consensus 524 ~~~~~~~~~k 533 (534)
.++|..+++|
T Consensus 455 i~eA~~~~sk 464 (700)
T KOG1156|consen 455 IEEAEEVLSK 464 (700)
T ss_pred cHHHHHHHHH
Confidence 8888887653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-11 Score=114.21 Aligned_cols=133 Identities=15% Similarity=0.020 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRP-TVISYNIIILGFC 450 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 450 (534)
|......+...++.++|...+.++... .+.....|......+...|...+|.+.|...... .| ++.....+..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 444555666677777777777666654 2344556666666777777778887777776654 33 3556667777777
Q ss_pred hcCChHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 451 KTRRINESIE--VLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 451 ~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
+.|+..-|.. ++..+++.++. +...|..++..+...|+.++|.+.|+.+.++.+.+|
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 7777766666 77777777643 677777788888888888888888887777766555
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-10 Score=104.18 Aligned_cols=443 Identities=16% Similarity=0.136 Sum_probs=255.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
....=+..+...|++++|++...+++..+ +.+..++..-+-++++.+++++|+.+.+.-......+... ..-+.+..+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yr 91 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYR 91 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHH
Confidence 44455677889999999999999999876 7788889998999999999999997666544322222222 344556678
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHhHHH
Q 047017 119 ANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVI--TYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~ 196 (534)
.+..++|...++... +.+..+...-...+.+.|++++|..+|+.+.+.+. ++.. .-..++.+- -...+.
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~----a~l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVA----AALQVQ 162 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH----HhhhHH
Confidence 999999999998332 22445677778889999999999999999988763 3222 112222111 001110
Q ss_pred HHHHHhcccccCChHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCh---
Q 047017 197 KLLDEMGMCKKGMVGQAFQFVRSLESRGCQP--DVISYNMLLRTLLNMGKWEEGEKLMTEMISRG-------LEPNV--- 264 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~--- 264 (534)
+.+ .....| +-..+......+...|++.+|+++++...+.+ -.-+.
T Consensus 163 -~~q---------------------~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie 220 (652)
T KOG2376|consen 163 -LLQ---------------------SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE 220 (652)
T ss_pred -HHH---------------------hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH
Confidence 111 111112 11222333445677899999999998873221 01011
Q ss_pred ----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHH---HHHhcCCH-H-HHHHHHHHHHHCC------
Q 047017 265 ----VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS---AYCKDGRL-D-LAIEFLDYMISDG------ 329 (534)
Q Consensus 265 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~~------ 329 (534)
.....+...+...|+.++|..++...++.+.. |........+ +...-.++ + .++..++......
T Consensus 221 ~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~ 299 (652)
T KOG2376|consen 221 EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence 12345666677889999999999998887533 4322211111 11111111 1 1111121111100
Q ss_pred ----CCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCC
Q 047017 330 ----CLPDIVNY-NTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALW--SSGDKIRALGMISEMLSKGIEP 402 (534)
Q Consensus 330 ----~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~ 402 (534)
-....... +.++..| .+..+.+.++....... .|. ..+..++..+. +...+..+..++....+....-
T Consensus 300 ~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~ 374 (652)
T KOG2376|consen 300 KLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEK 374 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCch
Confidence 00011111 1222222 33444444443333221 222 22333333322 2224667777777666542221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC
Q 047017 403 DEITYNSLISCLCRDGMVDEAVGLLV--------DMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK--GCKP 472 (534)
Q Consensus 403 ~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 472 (534)
...+.-..+......|+++.|.+++. .+.+.+..| .+...+...+.+.++.+.|..++.+++.. .-.+
T Consensus 375 s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 375 SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 23444555666778899999988888 455544444 34455666677777777777777766641 1122
Q ss_pred CH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 473 NE----TTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 473 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.. .++..++..-.+.|+-++|..+++++++.+|.+.+++..+.-.|...+
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 22 233344444456788999999999999988888888888888777654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-11 Score=101.61 Aligned_cols=403 Identities=13% Similarity=0.116 Sum_probs=251.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
-..+..++...|++++|+..+..+.+.+ .++.+.+..+.-+..-.|.+.+|..+.+...+ ++-.-..++....+.
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHh
Confidence 3456778889999999999999988765 77888888888888889999999988776543 555556667777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHhcCCHhHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTI-LIQATMLEGQTDKAMKL 198 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~ 198 (534)
|+-++...+.+.+... ...-.+|.......-.+++|+++|.+++..+ |+-...+. ++-+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 8888777776666532 2344455555555567899999999988764 33333333 34456677777777666
Q ss_pred HHHhcccccCChHHHH-----------------HHHHHHHHcCCCCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHH
Q 047017 199 LDEMGMCKKGMVGQAF-----------------QFVRSLESRGCQPDVISYNMLLRTLLN-----MGKWEEGEKLMTEMI 256 (534)
Q Consensus 199 ~~~~~~~~~~~~~~a~-----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~ 256 (534)
+.-. +.+-++..-|. .-...+...+.. . | ..+.-.++ .++-+.|++++--+.
T Consensus 208 l~vY-L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 208 LKVY-LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred HHHH-HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 6543 11111111111 111111111100 0 1 11111222 233466777666555
Q ss_pred HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC-------HHHHHHHHHHHHHCC
Q 047017 257 SRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR-------LDLAIEFLDYMISDG 329 (534)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~ 329 (534)
.. =+.....++-.|.+.++..+|..+.+.+.- .++.-|..-.-.+...|+ ..-|...|+..-..+
T Consensus 282 ~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 282 KH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hh----ChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 43 233445667778899999999988876532 233333222223333332 445666665554433
Q ss_pred CCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 330 CLPDI-VNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYN 408 (534)
Q Consensus 330 ~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (534)
..-|. .--..+..++.-..++++++.++..+..--.. |......++.+++..|++.+|+++|-.+....++.+..-..
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 22221 22334555556666789999888888776433 33344467889999999999999998877654454444445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTV-ISYNIIILGFCKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
.|.++|.+.++++.|++++-++.. +.+. .....++.-|.+.+.+--|.+.|..+...++.|
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 677899999999999988765542 2222 234456677888999888888888887765444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-11 Score=110.96 Aligned_cols=298 Identities=17% Similarity=0.174 Sum_probs=212.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC-
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN- 120 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 120 (534)
-....+...|++++|++.++..... +..........+..+.+.|+.++|..++..+...+|.+...|..+..+..-..
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 3445678899999999999886543 45556777888999999999999999999999999999888888888873332
Q ss_pred ----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 121 ----QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMI-ESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 121 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+.+...++|+++... .|.......+.-.+.....+ ..+...+..+...|+|+ +|..|-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 577888999988776 45544443333333332233 34556677777888653 566666666644444444
Q ss_pred HHHHHHhcccccCChHHHHHHHHHHHHc----------CCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047017 196 MKLLDEMGMCKKGMVGQAFQFVRSLESR----------GCQPDV--ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN 263 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 263 (534)
.+++... ...+... .-+|+. .++..+...|...|++++|++.++..+... |+
T Consensus 163 ~~l~~~~--------------~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt 226 (517)
T PF12569_consen 163 ESLVEEY--------------VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PT 226 (517)
T ss_pred HHHHHHH--------------HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC
Confidence 4444433 1111111 123344 344666778889999999999999999883 44
Q ss_pred -hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--------
Q 047017 264 -VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI-------- 334 (534)
Q Consensus 264 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------- 334 (534)
+..|..-++.+-..|++.+|.+.++.+...+.. |...-+..+..+.+.|+.++|.+++......+..|..
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 677888889999999999999999999887543 6666667778888999999999999888776533221
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
......+.+|.+.|++..|++.|..+.+
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1224567788899999888887776644
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=113.92 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=205.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 267 YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346 (534)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (534)
-..+..+|.+.|.+.+|.+.++...+. .|-+.+|..+..+|.+..++..|+.++.+-++. .+-+........+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467889999999999999999998886 567778999999999999999999999998876 35556666677888889
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047017 347 NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGL 426 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 426 (534)
.++.++|.++|+...+.. +.+++....+...|.-.++++.|+.+++++++.|+. ++..|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998875 778888888888899999999999999999999865 788899999999999999999999
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 427 LVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 427 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
|++....--.|+ ..+|..+.......|++..|.+.|+-.+..+.. +.+.++.|.-.-.+.|+.++|+.+++.+....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 988876533343 567888888888899999999999999887644 67888988888889999999999999999988
Q ss_pred CCchHHHHHH
Q 047017 505 AISRDTFKRL 514 (534)
Q Consensus 505 ~~~~~~~~~l 514 (534)
|..-+....+
T Consensus 460 P~m~E~~~Nl 469 (478)
T KOG1129|consen 460 PDMAEVTTNL 469 (478)
T ss_pred ccccccccce
Confidence 8665544433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-12 Score=108.74 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=201.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
-+.+..+|.+.|-+.+|.+.++..++. .|-+.||..+...|.+..+++.|+.++.+-.+. ++.+......+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999998887 677889999999999999999999999998876 44466666677888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047017 312 DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGM 391 (534)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 391 (534)
.++.++|.++++...+.. +.+......+...|...++++.|+.+|+++...| ..++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999999874 6678888888899999999999999999999998 56899999999999999999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 392 ISEMLSKGIEPD--EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 392 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
|.+.+..-..|+ ..+|..+.......|++..|.+.|+-....+ ......++.|.-.-.+.|++++|..+++.+.+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999887644444 4678888888889999999999999888763 335778899988889999999999999998775
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-12 Score=125.61 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=160.2
Q ss_pred CCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 047017 86 RKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA---------NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM 156 (534)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 156 (534)
+.+++|..+|+++.+.+|.+..++..+..++... +++++|...++++.+.+ +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4577888888888887777777777776655422 34678888888887763 3356677777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 047017 157 IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLL 236 (534)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (534)
+++|...|+++.+.+ |.+...+..+..++...|++++|...++++ ...+.. +...+..++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A------------------l~l~P~-~~~~~~~~~ 413 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC------------------LKLDPT-RAAAGITKL 413 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HhcCCC-ChhhHHHHH
Confidence 888888888888775 556677777788888888888888888776 333221 222333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
..+...|++++|...++++.....+-+...+..+..++...|++++|...+.++.... +.+......+...|...| +
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~ 490 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--E 490 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--H
Confidence 4566677888888888877665322234456667777778888888888887765542 223333444555556666 4
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 047017 317 LAIEFLDYMISDG-CLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG 364 (534)
Q Consensus 317 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 364 (534)
.|...++.+.+.. ..+....+ ....+.-.|+.+.+..+ +++.+.+
T Consensus 491 ~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666666655431 01111112 33444556666666555 6666543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-11 Score=109.66 Aligned_cols=437 Identities=13% Similarity=0.049 Sum_probs=249.3
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHH
Q 047017 68 CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNI 146 (534)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 146 (534)
+..+...|..+.-++...|+++.+.+.|+......-...+.|..+...+...|.-..|..+++......-.| |...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345667777777777777777777777777765555556677777777777777777777777655442123 2333333
Q ss_pred HHHHH-HcCCCHHHHHHHHHHHHhC--C--CCCCHhhHHHHHHHHHhc----CCHhHHHHHHHHhcccccCChHHHHHHH
Q 047017 147 MIGSL-CSRGMIESAFKVFDQLLRD--N--CKPTVITYTILIQATMLE----GQTDKAMKLLDEMGMCKKGMVGQAFQFV 217 (534)
Q Consensus 147 l~~~~-~~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~a~~~~ 217 (534)
....| .+.+..++++.+-.+++.. + -......+..++-+|... ...++=.. ...++++.+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~-----------~h~kslqal 467 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDA-----------LHKKSLQAL 467 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHH-----------HHHHHHHHH
Confidence 33333 3456666666666665541 1 012223344444333321 11111111 112344555
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 047017 218 RSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTP 297 (534)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (534)
++..+.+.. |+.....+.--|...++.+.|.+..++..+.+...+...|..++-.+...+++.+|+.+.+.....- ..
T Consensus 468 e~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GD 545 (799)
T ss_pred HHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hh
Confidence 555554432 3333333444456677778888877777777555677777777777777778888887777766531 11
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCCHhhHHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDV--GCPPNVSSYNTM 375 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l 375 (534)
|......-+..-..-++.+++......+... |...- ...+.++-....+....+.-. .......++..+
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 1111112222223356666666555554432 00000 000111111111111111100 001112222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 376 FSALWSSGDKIRALGMISEMLSKGI--EPD------EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIIL 447 (534)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 447 (534)
.......+ ..+..-.. +..... .|+ ...|......+.+.+..++|...+.+.... .+.....|.....
T Consensus 617 s~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 617 SSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGL 692 (799)
T ss_pred HHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhH
Confidence 22111111 00000000 111111 122 123455666788889999999888888765 2335667777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH--HHHHHHHcCCCchHHHHHHHhhcchHHHHH
Q 047017 448 GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAME--LANALVSMHAISRDTFKRLNRTFPLLDVYK 525 (534)
Q Consensus 448 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 525 (534)
.+...|.+.+|.+.|..++..++. +......++.++...|+..-|.. ++..+++.+|.++++|+.++.++.+.|+.+
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 888999999999999999887533 67778899999999998888887 999999999999999999999999999999
Q ss_pred Hhhhhh
Q 047017 526 EISHLA 531 (534)
Q Consensus 526 ~~~~~~ 531 (534)
+|.+-+
T Consensus 772 ~Aaecf 777 (799)
T KOG4162|consen 772 QAAECF 777 (799)
T ss_pred HHHHHH
Confidence 887654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-12 Score=109.72 Aligned_cols=201 Identities=12% Similarity=0.069 Sum_probs=151.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
....+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++......+.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45677888889999999999999999988764 55677888888889999999999999999888887788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 116 FCKANQIELANKVLDRLRSRGFS-PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
+...|++++|.+.++++...... .....+..+..++...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 88999999999999888765222 234456667777888888888888888887764 4455667777777777777777
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
|...+++. ... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERY------------------QQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHH------------------HHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777665 222 233455555666666777777777777666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-11 Score=106.82 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=130.8
Q ss_pred HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 047017 299 AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSA 378 (534)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (534)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445556666666777777777776666543 3345566666667777777777777777766653 4455666666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 047017 379 LWSSGDKIRALGMISEMLSKGI-EPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE 457 (534)
Q Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 457 (534)
+...|++++|...++++..... +.....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665321 1223455556667777777777777777776642 2235566667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 458 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
|...++++.+.. +.+...+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 777777777652 335555666667777777777777777766554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-10 Score=103.51 Aligned_cols=427 Identities=11% Similarity=0.040 Sum_probs=238.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL 124 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 124 (534)
...+..|+++.|+.+|.+.+..+ |++...|..-..++...|++++|++--.+..+..|.-+..|.....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45566777777777777777766 45777777777777777777777777777776666667777777777777777777
Q ss_pred HHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-----HHHHhcCCHhHHHHH
Q 047017 125 ANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILI-----QATMLEGQTDKAMKL 198 (534)
Q Consensus 125 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~ 198 (534)
|+..|.+-++. .| +...+..+..++ ..+.+. +.. ..++..|..+. +.+.....+..-++.
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 77777777665 33 344455555554 111111 111 11111121111 111111111111111
Q ss_pred HHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCC---------------
Q 047017 199 LDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMI-SRGLEP--------------- 262 (534)
Q Consensus 199 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~--------------- 262 (534)
+..-. .. ...... ++.....+... ...+.. ....-..+. ..+..|
T Consensus 155 ~~~~p----~~-----------l~~~l~-d~r~m~a~~~l-~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ 215 (539)
T KOG0548|consen 155 IQKNP----TS-----------LKLYLN-DPRLMKADGQL-KGVDEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNT 215 (539)
T ss_pred hhcCc----Hh-----------hhcccc-cHHHHHHHHHH-hcCccc--cccccccccCCCCCCcccccCCCCCccchhH
Confidence 11110 00 000000 11111110000 000000 000000000 000001
Q ss_pred -------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047017 263 -------NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV 335 (534)
Q Consensus 263 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (534)
-..-...+.+...+..+++.|++.+....+.. .+..-++....+|...|.+..+...-....+.|.. ...
T Consensus 216 ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ra 292 (539)
T KOG0548|consen 216 EERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRA 292 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHH
Confidence 11124456666677778888888888777764 35555666777777777777777666666555421 111
Q ss_pred H-------HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 047017 336 N-------YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDE-ITY 407 (534)
Q Consensus 336 ~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 407 (534)
- +..+..+|.+.++++.++..|++.......|+ ...+....+++........-. .|.. .-.
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~ 361 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEE 361 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHH
Confidence 1 22234456666778888888887655432222 122233444555444444332 2222 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 487 (534)
..-...+.+.|++..|...|.+++... +.|...|....-+|.+.|.+..|+.=.+..++.+ ++....|..=+.++...
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHH
Confidence 233566778888888888888888775 4467788888888888888888888888877764 22445555555666667
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 488 GWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 488 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
.+++.|.+.|++.++.+|.+......+.+|+...
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 7888888888888888888888888888877753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-08 Score=93.25 Aligned_cols=458 Identities=12% Similarity=0.084 Sum_probs=272.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH---HhcC-----CHhHHHHHHHHHHHcCCCChh
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKF---FQER-----KSNKAVRVMEILEKYGEPDVF 107 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~-----~~~~a~~~~~~~~~~~~~~~~ 107 (534)
+...|...|..... .-..+-..+|+++.+. .+.+...|..-++.- .+.. .++..-..|+...-.-..-+.
T Consensus 26 svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpR 103 (835)
T KOG2047|consen 26 SVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPR 103 (835)
T ss_pred hHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCH
Confidence 34455555554433 2233455667776664 355666666555321 1111 122222333333222234556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSR-GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQAT 186 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (534)
+|...+.....+|++......|++.+.. .+......|...+......|-++.+..+|++.++.. +..-...+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 7888888888888888888888887654 223345667778887778888888888888887643 33355666777
Q ss_pred HhcCCHhHHHHHHHHhc-----ccccCCh-HHHH-HHHHH---------------HHHcCC--CCCH--hhHHHHHHHHH
Q 047017 187 MLEGQTDKAMKLLDEMG-----MCKKGMV-GQAF-QFVRS---------------LESRGC--QPDV--ISYNMLLRTLL 240 (534)
Q Consensus 187 ~~~g~~~~a~~~~~~~~-----~~~~~~~-~~a~-~~~~~---------------~~~~~~--~~~~--~~~~~l~~~~~ 240 (534)
.+.+++++|.+.+..+. ....|.. .+-+ .+++- +...|+ -+|. ..|+.|..-|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 78888888888877761 0111110 0000 01111 111111 1222 35788999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC----------------------ChhHHHHHHHHHHHCCC---
Q 047017 241 NMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG----------------------KTEDAVDVLRAAKEKGL--- 295 (534)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~--- 295 (534)
+.|.++.|.++|++.+..- ....-|+.+...|+... +++-....|+.+.....
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999999987752 23334444444443221 12223333333333210
Q ss_pred --------CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 047017 296 --------TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPD------IVNYNTILAAFCKNGNADQALEIFEKLS 361 (534)
Q Consensus 296 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 361 (534)
+.+...|..-. -+..|+..+-...+.+++.. +.|. ...|..+...|-..|+.+.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 01111111111 12346677777777777764 2222 3568888999999999999999999998
Q ss_pred hCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHHHhcCCHH
Q 047017 362 DVGCPPN---VSSYNTMFSALWSSGDKIRALGMISEMLSKGIE----------P-------DEITYNSLISCLCRDGMVD 421 (534)
Q Consensus 362 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~g~~~ 421 (534)
+...+.- ..+|...+..-.+..+++.|+.+++.+....-. | +...|..+++.....|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7643322 345666667777888999999998887643111 1 1234555666666788899
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc---cCCHHHHHHHH
Q 047017 422 EAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIGY---GGWRAEAMELA 497 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~ 497 (534)
....+++++++..+. ++.+....+..+-...-++++.+++++-+..-..|+ ..+|+..+..+.+ .-+.+.|+.+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999887554 444444444455566778889999888877543444 3455555444332 23788999999
Q ss_pred HHHHHcCC
Q 047017 498 NALVSMHA 505 (534)
Q Consensus 498 ~~~~~~~~ 505 (534)
+++++.-|
T Consensus 574 EqaL~~Cp 581 (835)
T KOG2047|consen 574 EQALDGCP 581 (835)
T ss_pred HHHHhcCC
Confidence 99999545
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-11 Score=117.71 Aligned_cols=269 Identities=12% Similarity=0.098 Sum_probs=189.8
Q ss_pred cCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHH---------cCCCHHHHHHHHH
Q 047017 101 YGEPDVFAYNALISGFCK-----ANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLC---------SRGMIESAFKVFD 165 (534)
Q Consensus 101 ~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~a~~~~~ 165 (534)
..+.+..+|...+.+... .+++++|.+.|++..+. .|+ ...|..+..++. ..+++++|...++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 335555655555554322 13467899999999987 554 556666655544 2345899999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 047017 166 QLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKW 245 (534)
Q Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 245 (534)
++.+.+ |.+...+..+..++...|++++|...++++ ...+ +.+...+..+..++...|++
T Consensus 329 ~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A------------------l~l~-P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 329 KATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQA------------------NLLS-PISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHH------------------HHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 999886 778888999999999999999999999987 4443 33567788889999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 246 EEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYM 325 (534)
Q Consensus 246 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 325 (534)
++|+..++++.+.... +...+..++..+...|++++|...++++.+...+.++..+..+..++...|+.++|...+.++
T Consensus 389 ~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 389 EEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 9999999999987433 233334445556678999999999999887643335556777888889999999999999987
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 326 ISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG-CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
.... +.+......+...|...| +.|...++.+.+.. ..+....+ ....+.-.|+.+.+..+ +++.+.
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 468 STQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 7652 333445566666777777 47777777765531 11221222 44455556776666655 777765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-11 Score=97.60 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=160.0
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.-......+.-.|++.|++..|..-++++++++ |.+..+|..+...|.+.|..+.|.+.|+.+.+..|.+..+.|....
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 445567778888999999999999999999886 6678888888889999999999999999999888888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 047017 115 GFCKANQIELANKVLDRLRSRGFS-PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTD 193 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (534)
.++.+|++++|.+.|++......- .-..+|..+..+..+.|+++.|...|++.++.. +....+...+.....+.|++-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccch
Confidence 999999999999999988865222 235678888888888999999999999888875 555667777888888888888
Q ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 194 KAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
.|...++.. ...+ .++..+.-..++.--..|+.+.+-+.=..+...
T Consensus 191 ~Ar~~~~~~------------------~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 191 PARLYLERY------------------QQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHH------------------Hhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 887777764 3333 366777777777777777777776665555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-09 Score=92.55 Aligned_cols=405 Identities=11% Similarity=0.020 Sum_probs=261.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQER-KSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+...-...+.+|...++-..|.......... ......+.++..+.+.| +..++.--+......-|........++.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t---~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT---LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLE 172 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcc---ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHH
Confidence 5566677888999999999998876554432 12333344444333333 2222222222222211111111111111
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--cCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCC
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLC--SRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 191 (534)
.-. .| +...-..|-...++|...+....+.+++ -.++-..|...+-.+... -.+.|+.....+...+...|+
T Consensus 173 l~v-~g----~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 173 LGV-NG----NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred Hhh-cc----hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 111 11 1111112222223333333333333333 344444444444333322 357788889999999999999
Q ss_pred HhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047017 192 TDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP-DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSIL 270 (534)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 270 (534)
.++|+..|++. ... .| +..........+.+.|+++....+...+.... +-....|..-
T Consensus 248 n~~a~~~Fe~~------------------~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 248 YFQAEDIFSST------------------LCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred chHHHHHHHHH------------------hhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 99999999876 222 22 23334444555677899998888888776542 1233344444
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 047017 271 ISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (534)
+......++++.|+.+-++.++.+. .+...+..-..++...+++++|.-.|+.+.... |.+...|..++.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 4555677899999999998887642 255566666788899999999999999888763 56789999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMF-SALWS-SGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDGMVDEAVGLL 427 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 427 (534)
.+|...-+...+. ++.+..++..+. ..+.. ...-++|.++++..+.. .|+ ....+.+...+...|..+.+..++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999888777665 366777776663 33332 23457899999888764 555 456778888899999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047017 428 VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTY 477 (534)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 477 (534)
++... ..||....+.|.+.+...+.+++|.+.|..+++.+++ +..+.
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl 508 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTL 508 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHH
Confidence 99876 3788999999999999999999999999999987643 44443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-11 Score=94.51 Aligned_cols=208 Identities=17% Similarity=0.087 Sum_probs=179.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047017 301 SYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALW 380 (534)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (534)
+...+.-.|.+.|+...|..-++++++.+ +.+..++..+...|.+.|..+.|.+.|+++.+.. |.+..+.|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567788999999999999999999985 5577889999999999999999999999999886 778899999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 047017 381 SSGDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESI 459 (534)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 459 (534)
..|.+++|...|+++.....-+ -..+|..++.|..+.|+++.|...|++..+.. +....+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999998753222 34688899999999999999999999999873 224566778888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 460 EVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
-+++.....+. ++...+...|+.-...|+.+.+-++=..+.+..|.+++.-.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 99999988765 78888888899999999999999999999999998875443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-09 Score=103.13 Aligned_cols=431 Identities=16% Similarity=0.089 Sum_probs=264.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNI-MIGSLC 152 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 152 (534)
...-....+...|++++|++.++.....-..........+..+.+.|+.++|..+|..++++ .|+...|.. +..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHh
Confidence 33444566788899999999998877665666777888899999999999999999999988 556555554 444442
Q ss_pred c-----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC
Q 047017 153 S-----RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP 227 (534)
Q Consensus 153 ~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 227 (534)
- ..+.+...++|+++...- |.......+.-.+....++.. .+..++......|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~-----------------~~~~yl~~~l~KgvPs 144 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKE-----------------RLDEYLRPQLRKGVPS 144 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHH-----------------HHHHHHHHHHhcCCch
Confidence 1 235677788888887653 332222222211111111211 1233344456677553
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISR----G----------LEPNV--VTYSILISSLCRDGKTEDAVDVLRAAK 291 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (534)
+|+.+-..|.......-...++...... + -+|+. .++..+...|-..|++++|+++++..+
T Consensus 145 ---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 145 ---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred ---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5666666666555555555666655432 1 12333 244666778889999999999999999
Q ss_pred HCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhh
Q 047017 292 EKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSS 371 (534)
Q Consensus 292 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 371 (534)
++. +..+..|..-+..+-+.|++.+|...++.+...+ .-|...-+..+..+.+.|+.++|.+++....+.+..|....
T Consensus 222 ~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 222 EHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred hcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 984 2247788888999999999999999999999886 44777777888889999999999999999987654332221
Q ss_pred ------H--HHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CCCHH----------HHHHHHHHHHhc---CC----HH
Q 047017 372 ------Y--NTMFSALWSSGDKIRALGMISEMLSK--GI---EPDEI----------TYNSLISCLCRD---GM----VD 421 (534)
Q Consensus 372 ------~--~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~----------~~~~l~~~~~~~---g~----~~ 421 (534)
| ...+.+|.+.|++..|++.|..+.+. .+ .-|.+ +|..+++..-+. .. ..
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~ 379 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAK 379 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 1 34567899999999998877766543 11 12222 233333221111 01 12
Q ss_pred HHHHHHHHHHhCCCC---C---------ChhhHHHHHHHH---HhcCChHHHHHHH-HHH----------HH-cCCCCCH
Q 047017 422 EAVGLLVDMESTRFR---P---------TVISYNIIILGF---CKTRRINESIEVL-AAM----------FE-KGCKPNE 474 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~---~---------~~~~~~~l~~~~---~~~g~~~~A~~~~-~~~----------~~-~~~~~~~ 474 (534)
.|.+++-.+-+.... + +..--..+..-. .+...-+++...- ++. .. .....|.
T Consensus 380 ~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 459 (517)
T PF12569_consen 380 GAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD 459 (517)
T ss_pred HHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC
Confidence 344444444322100 0 000000010000 0000111111100 000 00 0011111
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 475 TTYVLLIEGIGYGG-WRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 475 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
. .++..+.+.. =.++|.++++-+.+..+...+++..--.+|...|+|--|.+-+.|
T Consensus 460 D---p~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 460 D---PLGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred C---ccHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1 1222333443 578899999999999999999999999999999999888877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-11 Score=109.62 Aligned_cols=244 Identities=20% Similarity=0.191 Sum_probs=142.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHH
Q 047017 141 VVTYNIMIGSLCSRGMIESAFKVFDQLLRD-----N-CKPTVI-TYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQA 213 (534)
Q Consensus 141 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a 213 (534)
..+...+...|...|+++.|..+++..++. | ..|... ..+.+...|...+++++|..+|+++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A----------- 267 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA----------- 267 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-----------
Confidence 456667899999999999999999998865 2 123333 3445788899999999999998865
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-hhhHHHHHHHHHhCCChhHHHHH
Q 047017 214 FQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR-----GL-EPN-VVTYSILISSLCRDGKTEDAVDV 286 (534)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~ 286 (534)
+.+++.......+.-..+++.|..+|.+.|++++|...++...+. +. .|. ...++.++..+...+++++|..+
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 666665554444444567888888999999999998888776543 11 111 12345555666667777777777
Q ss_pred HHHHHHC---CCCC----CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhCCCHHH
Q 047017 287 LRAAKEK---GLTP----DAYSYDPLISAYCKDGRLDLAIEFLDYMISDG-------CLPDIVNYNTILAAFCKNGNADQ 352 (534)
Q Consensus 287 ~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~ 352 (534)
++...+. -+.+ -..++..+...|...|++++|.++++.++... ..-....++.+...|.+.+.+.+
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 6654431 0111 12345555666666666666666665554321 01112234445555555555555
Q ss_pred HHHHHHHHhhC----C--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 353 ALEIFEKLSDV----G--CPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 353 A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
|.++|.+.... | .|.-..+|..|+..|...|+++.|.++.+.+
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 55555443221 1 1112233444444444444444444444433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-09 Score=95.69 Aligned_cols=400 Identities=13% Similarity=0.100 Sum_probs=219.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+-..|..-..++...|+|++|++=-.+..+.. |.-+..|...+.++.-.|++++|+..|.+-++..|.+...+..+..+
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a 113 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQA 113 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHh
Confidence 44557788889999999999999888877764 44578999999999999999999999999999999999999999888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhH---HHHHHHHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMI-----GSLCSRGMIESAFKVFDQLLRDNCKPTVITY---TILIQATM 187 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~ 187 (534)
+. .+.+. +.. ..++..|..+. +.+.... +........+.+ |.+...| ..++.+..
T Consensus 114 ~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~----~~~~~l~~~~~~-p~~l~~~l~d~r~m~a~~ 176 (539)
T KOG0548|consen 114 YL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDP----AYVKILEIIQKN-PTSLKLYLNDPRLMKADG 176 (539)
T ss_pred hh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccH----HHHHHHHHhhcC-cHhhhcccccHHHHHHHH
Confidence 71 11111 111 11333333332 2222222 222222222222 1111111 11111111
Q ss_pred hcCCHhHH-HHHHHHhcccccCChH----HHHHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 188 LEGQTDKA-MKLLDEMGMCKKGMVG----QAFQFVRSLES-RGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE 261 (534)
Q Consensus 188 ~~g~~~~a-~~~~~~~~~~~~~~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 261 (534)
.....+.- ...-..+......... .......+... .....-..-...+++...+..+++.|++.+.......
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-- 254 (539)
T KOG0548|consen 177 QLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-- 254 (539)
T ss_pred HHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--
Confidence 11000000 0000000000000000 00000000000 0000012235667888888999999999999988874
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcH-------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047017 262 PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSY-------DPLISAYCKDGRLDLAIEFLDYMISDGCLPDI 334 (534)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (534)
-+..-++....+|...|.+..+........+.|.. ....+ ..+..+|.+.++++.++..|.+.+.....|+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 36666778888899999998888888877766532 11222 22344666778899999999987776444332
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV-SSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISC 413 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 413 (534)
..+....+++....+...-.+ |.. .-...-...+.+.|++..|+..|.+++... +.|...|.....+
T Consensus 334 ---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 334 ---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 122223344444433333221 111 111222444556666666666666666653 4455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 414 LCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
|.+.|.+..|++=.+..++.. ++....|..=..++....++++|.+.|++.++.+
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666666666655555541 2223334434444555556666666666666653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-09 Score=99.63 Aligned_cols=245 Identities=16% Similarity=0.210 Sum_probs=137.6
Q ss_pred ccccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 32 SFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
++.|+..+|.++|..|+..|+.+.|- +|..|.-.+.+.+...+..++......++.+.+. .|.+.+|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------EPLADTYTN 88 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------CCchhHHHH
Confidence 45566677777777777777777766 7777766666666666777776666666655544 456667777
Q ss_pred HHHHHHhcCCHHH---HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHH
Q 047017 112 LISGFCKANQIEL---ANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATM 187 (534)
Q Consensus 112 l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 187 (534)
+..+|...||... ..+.++.+... +...|.-.....++..+.-. +.-||.. .++....
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~s---------------fs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv 150 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQS---------------FSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLV 150 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhh---------------hhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHH
Confidence 7777777776544 22211111111 11111111111111110000 0001110 1111112
Q ss_pred hcCCHhHHHHHHHHhc---------------ccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 188 LEGQTDKAMKLLDEMG---------------MCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 188 ~~g~~~~a~~~~~~~~---------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
..|-++.+++++..+- ......+++-..+.+...+ .|++.+|..++..-...|+.+.|..++
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 2222333333322220 0011111111122222222 578888999999888999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 253 TEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
.+|.+.|++.+.+.|-.++-+ .++...+..+++-|.+.|+.|+..|+...+..+..
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 999999988888877776644 78888888888889999998888887766655554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-10 Score=99.84 Aligned_cols=234 Identities=16% Similarity=0.010 Sum_probs=150.0
Q ss_pred CChhHHHHHHHHHHHCC-CCC--CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 047017 278 GKTEDAVDVLRAAKEKG-LTP--DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQAL 354 (534)
Q Consensus 278 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 354 (534)
+..+.++.-+.+++... ..| ....+..+...+...|+.+.|...|+++++.. +.+...|..+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 111 23456667777888888888888888888764 456778888888888888888888
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047017 355 EIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTR 434 (534)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 434 (534)
..|++..+.. |.+..++..+..++...|++++|+..++...+. .|+..........+...+++++|...+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888764 556777778888888888888888888888775 3332211122223345677888888886655331
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-Cc
Q 047017 435 FRPTVISYNIIILGFCKTRRINESIEVLAAMFEK---GC---KPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA-IS 507 (534)
Q Consensus 435 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 507 (534)
.|+...+ .......|+...+ ..++.+.+. .+ +.....|..++..+...|++++|+..|+++++.+| ..
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2222221 2223345555444 344444421 11 11245788888888999999999999999998886 44
Q ss_pred hHHHHHHHhhcch
Q 047017 508 RDTFKRLNRTFPL 520 (534)
Q Consensus 508 ~~~~~~l~~~~~~ 520 (534)
.+....+......
T Consensus 271 ~e~~~~~~e~~~~ 283 (296)
T PRK11189 271 VEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.8e-09 Score=87.00 Aligned_cols=300 Identities=14% Similarity=0.130 Sum_probs=205.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
--..+...++..|++..|+..|..+++.+ |.+-.++..-...|...|+...|+.-+...++..|.-..+-..-...+.+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 34567777888888888888888887754 44555566667788888888888888888887754444455555667788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChh----h------------HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 119 ANQIELANKVLDRLRSRGFSPDVV----T------------YNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~~----~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
+|.++.|..-|+.+++. .|+.. . ....+..+...|+...|+.....+++.. +-+...+..-
T Consensus 119 ~Gele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred cccHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 88999998888888876 33211 1 1223344566788888888888888764 6677777778
Q ss_pred HHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047017 183 IQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 262 (534)
..+|...|++..|+.-++.. .+. ...+..++..+-..+...|+.+.++..+++.++. .|
T Consensus 196 akc~i~~~e~k~AI~Dlk~a------------------skL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp 254 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQA------------------SKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP 254 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHH------------------Hhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc
Confidence 88888888888887766654 222 2335666777778888888888888888888776 44
Q ss_pred ChhhHH----HH---------HHHHHhCCChhHHHHHHHHHHHCCCCCC---HhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 263 NVVTYS----IL---------ISSLCRDGKTEDAVDVLRAAKEKGLTPD---AYSYDPLISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 263 ~~~~~~----~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
|..... .+ +......++|.++++..+...+...... ...+..+-.++...+++.+|+..-.+++
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 433211 11 1123445677777777777666533211 1234445556666777888888777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 047017 327 SDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG 364 (534)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 364 (534)
... +.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 335 ~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 335 DID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 753 3446777777788887888888888888887764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-09 Score=101.77 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=75.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSK-GIEPDEITYN----SLISCLCRDGMVDEAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 440 (534)
|.....|...+...-+.+.+..|.....++... ..+.+...|+ .+.+.++..|.++.|..-+...... .+..
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEd 1040 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDED 1040 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHH
Confidence 444455555555555555555555554443311 0011222222 3334445556666554433221110 0111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEK-GCKPN-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
+-..- -+....++++++.+.|++++.- +-..+ ......++.+....+..+.|...+-+.....+.......-|+-++
T Consensus 1041 i~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1041 IRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVY 1119 (1238)
T ss_pred Hhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 10000 1113467888888888888763 11222 234456666677777888888887777777766665555555444
Q ss_pred c
Q 047017 519 P 519 (534)
Q Consensus 519 ~ 519 (534)
.
T Consensus 1120 i 1120 (1238)
T KOG1127|consen 1120 I 1120 (1238)
T ss_pred H
Confidence 3
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-10 Score=106.72 Aligned_cols=247 Identities=18% Similarity=0.160 Sum_probs=167.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKY-------GEPDV-FAYNALISGFCKANQIELANKVLDRLRSR----- 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 135 (534)
|.-..+...+...|...|+++.|..+++..... ..+.. ...+.+...|...+++.+|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333445666888899999999999999887766 22222 33445788888999999999999988654
Q ss_pred CC-CC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHHhcCCHhHHHHHHHHhcccc
Q 047017 136 GF-SP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-----NC-KPTV-ITYTILIQATMLEGQTDKAMKLLDEMGMCK 206 (534)
Q Consensus 136 ~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 206 (534)
|- .| -..+++.|...|.+.|++++|...++++.+. +. .|.+ ..++.++..+...+++++|..++...
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a---- 351 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA---- 351 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH----
Confidence 21 22 2456777888899999999888888877642 11 2222 24566777788889999999888754
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C--CC-ChhhHHHHHHHHHhCCC
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG----L--EP-NVVTYSILISSLCRDGK 279 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~ 279 (534)
.+++..........-..+++.|...|...|++++|.++++.++... . .+ ....++.+...|.+.++
T Consensus 352 -------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 352 -------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred -------HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 4444422222211234678888889999999999999888876541 1 11 13356677777777788
Q ss_pred hhHHHHHHHHHHHC----C--CCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 280 TEDAVDVLRAAKEK----G--LTPDAYSYDPLISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 280 ~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
+.+|.++|.+.... | .+....+|..|+..|.+.|+++.|.++.+.+.
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 87777777665432 2 12233467777777777787777777776665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-08 Score=88.18 Aligned_cols=435 Identities=12% Similarity=0.055 Sum_probs=249.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..-+.++++.++|++|+.+.+.-... ..+...+..-+.+..+.++.++|+..++-+. +.+..+...-...
T Consensus 45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQv 119 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLKGLD---RLDDKLLELRAQV 119 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHhccc---ccchHHHHHHHHH
Confidence 4556777788899999999999665442211 1111122344566789999999999998332 5566678888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP--TVITYTILIQATMLEGQT 192 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 192 (534)
+.+.|++++|.++|+.+.+.+.+. +...-..++.+-.. ..+. +.+. ....| +-..+......+...|++
T Consensus 120 lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~---v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 120 LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQS---VPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHh---ccCCCcchHHHHHHHHHHHHhcccH
Confidence 999999999999999998774321 11111122211110 1111 1222 21122 122233344556788999
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCC------CCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQ------PDV-ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV 265 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 265 (534)
.+|+++++.. .++.++-...+-. ... ..-..+...+...|+.++|..++...++.. ++|..
T Consensus 192 ~qA~elL~kA-----------~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~ 259 (652)
T KOG2376|consen 192 NQAIELLEKA-----------LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEP 259 (652)
T ss_pred HHHHHHHHHH-----------HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCch
Confidence 9999998876 1111111111100 011 123345566788999999999999999885 33443
Q ss_pred h----HHHHHHHHHhCCChh-HHHHHHHHHHHCCCC---------CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 266 T----YSILISSLCRDGKTE-DAVDVLRAAKEKGLT---------PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL 331 (534)
Q Consensus 266 ~----~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (534)
. -|.++..-....-++ .++..++........ --...+...+......+..+.+.++-...... .
T Consensus 260 ~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~--~ 337 (652)
T KOG2376|consen 260 SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM--S 337 (652)
T ss_pred HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc--C
Confidence 2 233332211111112 122222221111000 00011111111222244455555544433322 2
Q ss_pred CCHHHHHHHHHHHH-hCCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCC
Q 047017 332 PDIVNYNTILAAFC-KNGNADQALEIFEKLSDVGCPPN-VSSYNTMFSALWSSGDKIRALGMIS--------EMLSKGIE 401 (534)
Q Consensus 332 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~ 401 (534)
|....-..+..+.. +...+..+.+++....+.. |.+ ..+...++......|+++.|..++. .+.+.+..
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~ 416 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL 416 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC
Confidence 33322222333222 2225778888888877653 333 4556667778889999999999998 55554434
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMEST--RFRPT----VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNET 475 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 475 (534)
| .+...+...+.+.++.+.|..++.+.++. ...+. ..++..++..-.+.|+-++|..+++++++.+ ++|..
T Consensus 417 P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~ 493 (652)
T KOG2376|consen 417 P--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTD 493 (652)
T ss_pred h--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHH
Confidence 4 44556667777888877788887776532 01111 2234444555567899999999999999965 46888
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 476 TYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 476 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
+...++.+|.+. +++.|..+-+.+..
T Consensus 494 ~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 494 LLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 889999999887 68888887665543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-07 Score=83.85 Aligned_cols=425 Identities=10% Similarity=0.074 Sum_probs=235.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMI 148 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 148 (534)
|.|..+|..|++-+... .+++++..++.+....|..+.+|...++.-.+.++++....+|.+.+.. ..+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 55666666666654333 6666666666666666666666666666666666666666666665544 23455555544
Q ss_pred HHHHc-CCCHH----HHHHHHHHHHh-CCCCC-CHhhHHHHHHH---------HHhcCCHhHHHHHHHHhcccccCChHH
Q 047017 149 GSLCS-RGMIE----SAFKVFDQLLR-DNCKP-TVITYTILIQA---------TMLEGQTDKAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 149 ~~~~~-~g~~~----~a~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~ 212 (534)
..-.+ .|+.. ...+.|+-.+. .|..+ +-..|+..+.. |....+++...++++++.....++.++
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 43222 12221 12222333222 22211 11223333322 233345556666666665555666666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhh---------------HHHHHHHHH
Q 047017 213 AFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR--GLEPNVVT---------------YSILISSLC 275 (534)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~l~~~~~ 275 (534)
-++-+...... .|..+-..++. -+...+..|.++++++... |...+..+ |..+|..-.
T Consensus 174 LW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 174 LWKDYEAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 55555544432 22222222221 1233455555555554321 22111111 333332211
Q ss_pred hCC------Ch--hHHHHHHHHHHH-CCCCCCHhcHHHH-------HHHHHhcCC-------HHHHHHHHHHHHHCCCCC
Q 047017 276 RDG------KT--EDAVDVLRAAKE-KGLTPDAYSYDPL-------ISAYCKDGR-------LDLAIEFLDYMISDGCLP 332 (534)
Q Consensus 276 ~~~------~~--~~a~~~~~~~~~-~~~~~~~~~~~~l-------~~~~~~~~~-------~~~a~~~~~~~~~~~~~~ 332 (534)
..+ .. ....-.+++... .+..|+ +|..- .+.+...|+ .+++..++++....-...
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe--iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPE--IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 00 111222222221 222222 22111 122333333 456666666665542222
Q ss_pred CHHHHHHHHHHHHh---CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 047017 333 DIVNYNTILAAFCK---NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEP-DEITYN 408 (534)
Q Consensus 333 ~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 408 (534)
+..++..+...--. .+..+....+++++...-...-.-+|..++....+......|..+|.++.+.+..+ +..+.+
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 33333333322111 12356666777777655333344567888888888889999999999999887666 567778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHc
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN--ETTYVLLIEGIGY 486 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 486 (534)
+++..++ .++...|.++|+--.+. ...++.--...+..+...++-..|..+|++.+..++.|+ ..+|..++.-=..
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 8887776 57889999999876654 233444445778888889999999999999998865554 5788899988889
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 047017 487 GGWRAEAMELANALVSMHA 505 (534)
Q Consensus 487 ~g~~~~A~~~~~~~~~~~~ 505 (534)
-|+...+.++-++.....+
T Consensus 485 vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred cccHHHHHHHHHHHHHhcc
Confidence 9999999999998888766
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.1e-09 Score=85.76 Aligned_cols=427 Identities=14% Similarity=0.068 Sum_probs=219.6
Q ss_pred ccccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 32 SFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
+...++..|.+.+..+++..++..|++++..-.+++ +.+......++.+|....++..|-..++.+....|.-..--..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 344566667777777777778888887777766654 4466666777777777777777777777777665443333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVV--TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE 189 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (534)
-...+.+.+.+..|+.+...|... ++.. +...-.......+++..+..+.++....| +..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 455566777777777777776532 1111 11111222345666777777766654322 334444445555566
Q ss_pred CCHhHHHHHHHHhcccccCChHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--
Q 047017 190 GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES-RGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVT-- 266 (534)
Q Consensus 190 g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 266 (534)
|+++.|.+-|+.. .+ .|.. ....|+. .-+..+.|+++.|++...+++++|++-.+..
T Consensus 158 gqyEaAvqkFqaA------------------lqvsGyq-pllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 158 GQYEAAVQKFQAA------------------LQVSGYQ-PLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred ccHHHHHHHHHHH------------------HhhcCCC-chhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 6666666666654 33 3333 3345554 3455677888888888888888765422110
Q ss_pred --HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 047017 267 --YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG-CLPDIVNYNTILAA 343 (534)
Q Consensus 267 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 343 (534)
-+..+.. ...|+. ..+. ..+ -...++.-...+.+.++++.|.+.+..|.... ...|+.+...+.-.
T Consensus 218 Gm~tegiDv-rsvgNt---~~lh----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 218 GMTTEGIDV-RSVGNT---LVLH----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred cceeccCch-hcccch---HHHH----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 0000000 000000 0000 000 11234444455666777777776666654321 12345555444332
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPDEITYNSLISCLCRDGMVDE 422 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 422 (534)
- ..+++.+..+-++-+...+ |....||..++-.|++..-++.|-.++.+-..... -.+...|+.+=..-...-..++
T Consensus 287 n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEe 364 (459)
T KOG4340|consen 287 N-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEE 364 (459)
T ss_pred c-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHH
Confidence 2 1233444444444444443 45566777777777777666666666654322211 1233333332222222345555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047017 423 AVGLLVDMESTRFRPTVISYNIIILGF--CKTRR---INESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELA 497 (534)
Q Consensus 423 A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 497 (534)
|.+-++.+... -....-...+..- ...++ ...|++-+++.++.- ..+...-.+.+++..++..+++.|
T Consensus 365 a~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 365 AFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHH
Confidence 55555443221 0000000111111 11111 122333333333321 123445566788888999999999
Q ss_pred HHHHHcCC
Q 047017 498 NALVSMHA 505 (534)
Q Consensus 498 ~~~~~~~~ 505 (534)
....+.-.
T Consensus 438 r~SvefC~ 445 (459)
T KOG4340|consen 438 RKSVEFCN 445 (459)
T ss_pred HHHHhhhc
Confidence 88877533
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-09 Score=101.15 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=177.0
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047017 59 FIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGF 137 (534)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 137 (534)
++-.+...|+.|+..+|..++..|+..|+.+.|- +|..|...+ |.+...|+.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455667789999999999999999999999998 999998888 888889999999988888877765
Q ss_pred CCChhhHHHHHHHHHcCCCHHH---HHHHHHHHHh----CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCCh
Q 047017 138 SPDVVTYNIMIGSLCSRGMIES---AFKVFDQLLR----DNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMV 210 (534)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 210 (534)
.|...+|..|..+|...||... +.+.+..+.. .|+-....-+ ++...+.-+-...+....... ...|.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~f--l~k~~c~p~~lpda~n~illl--v~eglw 155 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWF--LMKIHCCPHSLPDAENAILLL--VLEGLW 155 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHH--HhhcccCcccchhHHHHHHHH--HHHHHH
Confidence 5788999999999999999654 3332222222 2221111111 122122223333333322211 234556
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 047017 211 GQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAA 290 (534)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (534)
+.+++++..+...... . .+..+++-+... +....++........-.|++.++..++..-...|+.+.|..++..|
T Consensus 156 aqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 6666665443221111 0 111123322221 2223333333333222589999999999999999999999999999
Q ss_pred HHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 291 KEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346 (534)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (534)
.+.|++.+..-|-.++-+ .++...+..++.-|...|+.|+..|+...+..+..
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 999999888877777654 88888899999999999999998887766555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-09 Score=97.02 Aligned_cols=217 Identities=14% Similarity=0.044 Sum_probs=141.7
Q ss_pred CChhHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047017 51 GKFDESLYFIESMVANG---CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANK 127 (534)
Q Consensus 51 g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 127 (534)
+..+.++.-+.+++... .......|..++..+...|+.++|...|+...+.+|.++.+|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35667777777777532 112245688888889999999999999999999888899999999999999999999999
Q ss_pred HHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccc
Q 047017 128 VLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCK 206 (534)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 206 (534)
.|++..+. .| +..+|..+..++...|++++|.+.|+...+.+ |.+. ........+...++.++|...+.+.
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~---- 191 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQR---- 191 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHH----
Confidence 99999876 44 46778888888888999999999999988764 3333 1122222233456677777666543
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHhCCCh
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR---GL---EPNVVTYSILISSLCRDGKT 280 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~ 280 (534)
... ..++...+ . ......|+...+ +.+..+.+. .+ +.....|..+...+...|++
T Consensus 192 --------------~~~-~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 192 --------------YEK-LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred --------------Hhh-CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 211 12222111 1 222334444333 233333321 00 01234566667777777777
Q ss_pred hHHHHHHHHHHHCC
Q 047017 281 EDAVDVLRAAKEKG 294 (534)
Q Consensus 281 ~~a~~~~~~~~~~~ 294 (534)
++|...|+++.+.+
T Consensus 253 ~~A~~~~~~Al~~~ 266 (296)
T PRK11189 253 DEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-08 Score=95.88 Aligned_cols=471 Identities=13% Similarity=0.009 Sum_probs=287.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 51 GKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLD 130 (534)
Q Consensus 51 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 130 (534)
.+...|+..|-+..+.. +.-...|..++..|....+...|.+.|..+-+.++.+..+...+...|++..+++.|..+.-
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45778888887777765 44467788899999888889999999999999999999999999999999999999998844
Q ss_pred HHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh-------
Q 047017 131 RLRSRG-FSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM------- 202 (534)
Q Consensus 131 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------- 202 (534)
...+.. ...-...|....-.|...++...|..-|+...+.. |.|...|..++.+|...|.+..|.++|.++
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 433321 00112334455566778888999999999988876 778889999999999999999999999776
Q ss_pred ---------cccccCChHHHHHHHHHHHHcC------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH-------HHCCC
Q 047017 203 ---------GMCKKGMVGQAFQFVRSLESRG------CQPDVISYNMLLRTLLNMGKWEEGEKLMTEM-------ISRGL 260 (534)
Q Consensus 203 ---------~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~ 260 (534)
..+..|.+.++...+..+.... ...-..++..+...+...|-...+.+.++.. .....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 4566677777777776554321 0111222322333333333333333333322 22211
Q ss_pred CCChhhHHHHHHHH-----------------------HhCCCh---h---HHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 261 EPNVVTYSILISSL-----------------------CRDGKT---E---DAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 261 ~~~~~~~~~l~~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
..+...|-.+..+| ...+.. + -+.+.+-.-.+ ...+...|..++..|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHH
Confidence 11222222111111 111111 1 01111111111 11123344455444433
Q ss_pred --------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047017 312 --------DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG 383 (534)
Q Consensus 312 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (534)
..+...|+..+.+.++.. ..+..+|+.+... ...|++.-|...|-+..... |.+..+|..+...+....
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 122345677777776653 3466777776655 55677777777777766653 667788888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCChHHHH
Q 047017 384 DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME----STRFRPTVISYNIIILGFCKTRRINESI 459 (534)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 459 (534)
+++-|...|...+... +.+...|-.........|+.-++..+|..-. ..|--+...-|..........|+.++-+
T Consensus 865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 9999999998887752 2244455444445556777777777776521 1233444444444444455666665544
Q ss_pred HHHHHH----------HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCchHHHHHHHhhcchHHH
Q 047017 460 EVLAAM----------FEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH------AISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 460 ~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ 523 (534)
...+++ .. +.+.+...|...+...-+.+.+.+|..+..+++..- ...+-+-..+++.+...|.
T Consensus 944 ~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 433332 22 334456677777777777788888777777765421 1122245567788888888
Q ss_pred HHHhhhh
Q 047017 524 YKEISHL 530 (534)
Q Consensus 524 ~~~~~~~ 530 (534)
++.|..-
T Consensus 1023 fe~A~~a 1029 (1238)
T KOG1127|consen 1023 FESAKKA 1029 (1238)
T ss_pred hhhHhhh
Confidence 8776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-07 Score=86.92 Aligned_cols=290 Identities=16% Similarity=0.111 Sum_probs=181.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--------C-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVAN--------G-CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDV 106 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 106 (534)
+..+|..+.+++++..+++-|.-.+..|... . ..++ +.-..+.......|.+++|+.+|++...
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 5667888999998888888776655544321 0 0121 2222333444677899999999988875
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH----------hCC-----
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLL----------RDN----- 171 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~----- 171 (534)
|..+-..|...|.+++|.++-+.--+. . =..||......+...+|.+.|++.|++.. ...
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 455556777889999998876653222 1 23466666777777888888888887632 211
Q ss_pred ----CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh--------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047017 172 ----CKPTVITYTILIQATMLEGQTDKAMKLLDEM--------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL 239 (534)
Q Consensus 172 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (534)
-..+...|.......-..|+.+.|+.+|..+ ..+-+|+.++|-++-++ . .|......+.+.|
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMY 977 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHh
Confidence 1223445555566666789999999998887 66778999999888654 2 3667777889999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------------hCC--ChhHHHHHHHHHHHCCCCCCHhcHHH
Q 047017 240 LNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC-------------RDG--KTEDAVDVLRAAKEKGLTPDAYSYDP 304 (534)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (534)
-..|++.+|...|.+... +...|+.|- ..| +.-.|-.+|++. |. -+..
T Consensus 978 En~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~ 1040 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHK 1040 (1416)
T ss_pred hhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhH
Confidence 999999999999877643 222333221 111 222233333321 11 1223
Q ss_pred HHHHHHhcCCHHHHHHHHHH--------HHH--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 047017 305 LISAYCKDGRLDLAIEFLDY--------MIS--DGCLPDIVNYNTILAAFCKNGNADQALEIFEKL 360 (534)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 360 (534)
.+..|-+.|.+.+|+++--+ ++. .....|+...+.-...++...++++|..++-..
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34456677777666654311 111 123356777777777777777777777666544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.2e-09 Score=85.45 Aligned_cols=277 Identities=17% Similarity=0.169 Sum_probs=178.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCT-KLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+......+..+|....+|..|...++++-+. .|...-|. .-.+.+.+.+.+.+|+++...+.........+...-..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5566777888899999999999999999875 34444433 34567788999999999998887642222223333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
.....+++..+..++++....| +..+.+.......+.|+++.|.+-|+...+.+--.....|+. .-++.+.|+++.
T Consensus 121 IkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyas 196 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYAS 196 (459)
T ss_pred HhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHH
Confidence 4446788889999988887532 566666677777899999999999999998753334445554 445668899999
Q ss_pred HHHHHHHhccc--------ccCChHHHHHHHHHHHHcCCC------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 047017 195 AMKLLDEMGMC--------KKGMVGQAFQFVRSLESRGCQ------PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG- 259 (534)
Q Consensus 195 a~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 259 (534)
|++...++... .-|..-+... +...|.+ .-...+|.-...+.+.|+++.|.+.+-.|..+.
T Consensus 197 ALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 197 ALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred HHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 99988877110 0000000000 0000000 001224444455678888888888887775432
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDY 324 (534)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (534)
...|+.|...+.-.- ..+++.+..+-+..+...+. ....+|..++-.|++..-++.|-+++.+
T Consensus 273 ~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 273 EELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 234666666554332 23456566666666666543 3556788888888888888888777654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.1e-08 Score=90.68 Aligned_cols=197 Identities=12% Similarity=0.042 Sum_probs=126.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDV---VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
.|..+...+...|+.+.+.+.+....+.. +.+. +........+...|++++|...++.+....|.+..++.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 45555566667788888777777765543 2222 223333445677888999999998888877777766553 222
Q ss_pred HH----hcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 047017 116 FC----KANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG 190 (534)
Q Consensus 116 ~~----~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 190 (534)
+. ..+....+.+.+.... ...|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22 2344555555554411 11233 3344456677888888888988888888875 566677788888888888
Q ss_pred CHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 191 QTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGC-QPDV--ISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
++++|...+++. ..... .++. ..|..+...+...|++++|..++++....
T Consensus 163 ~~~eA~~~l~~~------------------l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 163 RFKEGIAFMESW------------------RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHhh------------------hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888887765 22211 1222 23456777788888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-07 Score=80.39 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=108.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047017 309 YCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRA 388 (534)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 388 (534)
+...|+...|+..+..+++.. +.|...+..-..+|...|++..|+.-++...+.. ..+...+-.+...+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 334455555555555555542 3455555555555555555555555555544442 34444444455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhc
Q 047017 389 LGMISEMLSKGIEPDEIT----YNSL---------ISCLCRDGMVDEAVGLLVDMESTRFRPTV---ISYNIIILGFCKT 452 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 452 (534)
+..+++.++. .||... |..+ +......++|.++.+..+...+....... ..+..+-.++...
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 5555555542 333221 1000 11233456666666666666654332112 2233444555666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 453 RRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 453 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
|++.+|+....+.++.. +.|..++..-..+|.-...+++|+.-|+++.+.++.+..+...+
T Consensus 321 ~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred CCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 77777777777776643 22466666667777777777777777777777777766554433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-10 Score=102.04 Aligned_cols=219 Identities=12% Similarity=0.130 Sum_probs=175.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 305 LISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (534)
...-+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+.. |.|...+..|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 3445678899999999999998885 5577899999999999999999999999999886 7888999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHHhc
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLI-----------SCLCRDGMVDEAVGLLVDM-ESTRFRPTVISYNIIILGFCKT 452 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 452 (534)
-..|+..++..+... |... .+. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.
T Consensus 369 q~~Al~~L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 999999998887542 1100 000 0111112233444455444 3444457888888898899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 453 RRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 453 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
|++++|++.|+.++...+ .|..+|+.|+-.+....+.++|+..|++++++.|.-..+.+.|+..+..+|-|+||+..+
T Consensus 444 ~efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999998753 378899999999999999999999999999999999999999999999999999998875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.5e-07 Score=85.77 Aligned_cols=447 Identities=15% Similarity=0.182 Sum_probs=215.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHH----------HHHHHHHHHcCC--------
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKA----------VRVMEILEKYGE-------- 103 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~~~~~~~-------- 103 (534)
.++...-+.++..--+.+++..++.| ..+..+++.+.+.|+..++-.+- ..+=....+++|
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 34445556777777888888888887 77999999999988876643221 111122222221
Q ss_pred ------------CChhhHHHHHHHHHhcCCHHHHHH-----------HHHHHHhCCCC--CChhhHHHHHHHHHcCCCHH
Q 047017 104 ------------PDVFAYNALISGFCKANQIELANK-----------VLDRLRSRGFS--PDVVTYNIMIGSLCSRGMIE 158 (534)
Q Consensus 104 ------------~~~~~~~~l~~~~~~~g~~~~a~~-----------~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 158 (534)
.....|....+.+.+..+.+--.+ ++++..+.+++ .|+......+.++...+-..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 112235555666666666544333 33444444332 35566667778888888888
Q ss_pred HHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHh----------cccccCChHHHHHHHHHHHHcC--
Q 047017 159 SAFKVFDQLLRDNCKP--TVITYTILIQATMLEGQTDKAMKLLDEM----------GMCKKGMVGQAFQFVRSLESRG-- 224 (534)
Q Consensus 159 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~-- 224 (534)
+-+++++++.-.+... +...-+.|+-. .-.-+.....++.+++ .....+-+++|+.+|++....+
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 9999998887543221 11122222222 2223334444444444 2223344455555554321100
Q ss_pred -------------------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 047017 225 -------------------CQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVD 285 (534)
Q Consensus 225 -------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (534)
.-..+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++-.+
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 0012233444444444444444444433221 133444444444444444444444
Q ss_pred HHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 286 VLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
.+..+.+....|. .-..++-+|.+.++..+-.+++ ..|+......+..-|...+.++.|.-+|...
T Consensus 1155 yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1155 YLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred HHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 4444443322222 2233444444444444333222 1234444444444444444444444444322
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
..|..+...+...|++..|...-+++ .+..+|..+..+|...+.+.-| +|...++.....-...+
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 22444444555555555444433321 2344555555555544443322 22233333334445566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHH
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYK 525 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 525 (534)
+..|...|-+++-+.+++..+... +-....|..|.-.|.+- ++++-.+.++-....-..+ .+.++..+.--|.
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNip-----KviRA~eqahlW~ 1358 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIP-----KVIRAAEQAHLWS 1358 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHH
Confidence 666667777777766666665422 12445556555555544 4555555555544332211 2334444555566
Q ss_pred Hhhhhhc
Q 047017 526 EISHLAT 532 (534)
Q Consensus 526 ~~~~~~~ 532 (534)
|..-++.
T Consensus 1359 ElvfLY~ 1365 (1666)
T KOG0985|consen 1359 ELVFLYD 1365 (1666)
T ss_pred HHHHHHH
Confidence 6655543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-07 Score=90.05 Aligned_cols=251 Identities=16% Similarity=0.179 Sum_probs=162.6
Q ss_pred ChhhHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---------CC
Q 047017 36 KETQFMKLIK--RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---------EP 104 (534)
Q Consensus 36 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~ 104 (534)
++.+-..++. .|+..|+.+.|.+-.+.+. +...|..+.+.+.+.++++-|.-.+-.|.... ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4444444443 3556899999998887765 45689999999999888887765554433211 11
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 047017 105 DVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQ 184 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 184 (534)
+...=...+......|.+++|..+|.+-.+. ..|-..|-..|.+++|.++-+.-.+..+ ..||...+.
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 1133334445566789999999999998754 3455677889999999998876444332 246667777
Q ss_pred HHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc--------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 185 ATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR--------GCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 185 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
.+-..+|.+.|++.|++..- .|+++++.+.+. ....|...|......+-..|+.+.|+.+|....
T Consensus 867 ~Lear~Di~~AleyyEK~~~-------hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGV-------HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCC-------hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 77788999999999998721 223333222221 012345566666777777899999988887664
Q ss_pred HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 257 SRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
. |..+++..+-.|+.++|-++-++- -|......+.+.|-..|++.+|..+|.++.
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3 445555666667777766655432 244555666667777777777776665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.7e-08 Score=89.88 Aligned_cols=299 Identities=9% Similarity=-0.039 Sum_probs=168.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHH
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMISRGL-EPNV-VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLI 306 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (534)
...+..+...+...|+.+.+...+........ .++. .........+...|++++|...++++.+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34455566666666777776666666554321 1121 112222344567788888888888877753 223333331 1
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047017 307 SAYC----KDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS 382 (534)
Q Consensus 307 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (534)
..+. ..+..+.+.+.+..... ..+........+...+...|++++|...+++..+.. |.+...+..+..++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1222 23444555555444111 122233445556677788888888888888888775 66667777788888888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCh
Q 047017 383 GDKIRALGMISEMLSKGI-EPDE--ITYNSLISCLCRDGMVDEAVGLLVDMESTRF-RPTVISY-N--IIILGFCKTRRI 455 (534)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~ 455 (534)
|++++|...+++...... .|+. ..+..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888776421 1222 2344677778888888888888888754322 1111111 1 223333444443
Q ss_pred HHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---------chHHHHHHHhhcchH
Q 047017 456 NESIEVLAAMFE---KGCK--PNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI---------SRDTFKRLNRTFPLL 521 (534)
Q Consensus 456 ~~A~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 521 (534)
..+... +.+.. .... .........+.++...|+.++|...++.+...... ........+.++...
T Consensus 242 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 333222 11111 1101 11122225666777888888888888877663322 123344456666778
Q ss_pred HHHHHhhhhhc
Q 047017 522 DVYKEISHLAT 532 (534)
Q Consensus 522 ~~~~~~~~~~~ 532 (534)
|++++|.+++.
T Consensus 321 g~~~~A~~~L~ 331 (355)
T cd05804 321 GNYATALELLG 331 (355)
T ss_pred CCHHHHHHHHH
Confidence 88888877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-10 Score=96.93 Aligned_cols=256 Identities=14% Similarity=0.107 Sum_probs=164.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888776555 222222223444556677888888876543 3333332 455555555554444334555
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 317 LAIEFLDYMISDGCL-PDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 317 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
.+..-++........ .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555444433322 23333333445566778899888877543 36677777888999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 396 LSKGIEPDEITYNSLISCLC----RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
.+. ..|. +...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.++++++++.+..
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 874 3343 3333444433 234688999999998765 5678888899999999999999999999998876543
Q ss_pred CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCch
Q 047017 472 PNETTYVLLIEGIGYGGWR-AEAMELANALVSMHAISR 508 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~ 508 (534)
++.++..++.+....|+. +.+.+++.++.+.+|..+
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 677888888888888887 678889999888888777
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-06 Score=85.60 Aligned_cols=365 Identities=15% Similarity=0.157 Sum_probs=239.3
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 047017 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNI 146 (534)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 146 (534)
.|++.....++++...+-+.+-+++++++.-.+ ..+...-+.++-...+. +..+..++.+++-.-+. | .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-P------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-h------h
Confidence 355666666777777777777778887776544 22333344444443333 34455555555543311 1 1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC---------------------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRDN---------------------CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC 205 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 205 (534)
+...+...+-+++|..+|++....+ --..+..|..++.+-.+.|...+|++.|-+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 2223333444455555544421100 0112345666666666666666666555443
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 047017 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVD 285 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (534)
.|+..|..++....+.|.|++-.+.+....+..-.|.. =+.++-+|++.++..+..+
T Consensus 1131 ---------------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1131 ---------------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred ---------------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHH
Confidence 47788999999999999999999999888777545443 4678889999999888766
Q ss_pred HHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 286 VLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
++ .-|+......+.+-|...+.++.|.-+|.. ..-|..+...+...|++..|...-+++
T Consensus 1188 fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA----- 1246 (1666)
T KOG0985|consen 1188 FI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA----- 1246 (1666)
T ss_pred Hh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----
Confidence 65 246888888999999999999998877754 344778888889999999888655443
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
.+..+|..+-.+|...+.+.-| +|-..++-....-...++..|...|.+++...+++...... +.....|+.|
T Consensus 1247 -ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTEL 1319 (1666)
T KOG0985|consen 1247 -NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTEL 1319 (1666)
T ss_pred -cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHH
Confidence 3678899999999877665443 23233334455667889999999999999999998776431 2245567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
.-.|.+- ++++..+.++-.-.+ .-...+++++-...-|.+..-+|.+-.+.
T Consensus 1320 aiLYsky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHHhc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7666553 455555555544332 11236788888888888888887766554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.7e-09 Score=93.60 Aligned_cols=223 Identities=18% Similarity=0.119 Sum_probs=133.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
..-.+++.|+..+|.-.|+.+++.+ |.+.++|..|+......++-..|+..++++.+.+|.+..+...|+..|...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 4455778888999999999888876 778889999999999999888999999999999899999999999999999888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHH---------HHHHcCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCH
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMI---------GSLCSRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
..|.++|+.-+... |. ..|.... ........+....++|-++... +..+|+.+...|.-.|.-.|++
T Consensus 370 ~~Al~~L~~Wi~~~--p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK--PK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHhC--cc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 88888888876542 11 0000000 0011111122333333333322 2124445555555555555555
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHH
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILI 271 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 271 (534)
++|++.|+.+ .... |-|...||.|...+....+.++|+..|.+.++. .|+ +.+...|.
T Consensus 447 draiDcf~~A------------------L~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlg 505 (579)
T KOG1125|consen 447 DRAVDCFEAA------------------LQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLG 505 (579)
T ss_pred HHHHHHHHHH------------------HhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhh
Confidence 5555555543 2111 223445555555555555555555555555554 232 23334444
Q ss_pred HHHHhCCChhHHHHHHHHH
Q 047017 272 SSLCRDGKTEDAVDVLRAA 290 (534)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~ 290 (534)
-.|...|.+++|.+.|-.+
T Consensus 506 IS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hhhhhhhhHHHHHHHHHHH
Confidence 4455555555555555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-07 Score=86.46 Aligned_cols=107 Identities=14% Similarity=0.238 Sum_probs=51.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHH
Q 047017 238 TLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDL 317 (534)
Q Consensus 238 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (534)
+.....+|.+|+.+++.+.... .-...|..+...|...|+++.|.++|-+. ..+...+..|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3444555555555555555442 22334555556666666666666665332 124445556666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 047017 318 AIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIF 357 (534)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 357 (534)
|.++-.+... .......|..-..-+-..|++.+|.++|
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 6655544322 1122233333333344444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=72.00 Aligned_cols=49 Identities=43% Similarity=0.769 Sum_probs=34.9
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 047017 139 PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATM 187 (534)
Q Consensus 139 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (534)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5667777777777777777777777777777777777777777776654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-07 Score=94.01 Aligned_cols=272 Identities=14% Similarity=0.047 Sum_probs=179.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC---C--CHhcHHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPNV----VTYSILISSLCRDGKTEDAVDVLRAAKEKGLT---P--DAYSYDPL 305 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l 305 (534)
+...+...|++++|...++.........+. ...+.+...+...|++++|...+.+....... + .......+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 345567899999999999988764212121 23455666778899999999999887753111 1 12244556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CCC--CHhhHHH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISD----GCL--P-DIVNYNTILAAFCKNGNADQALEIFEKLSDVG--CPP--NVSSYNT 374 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~ 374 (534)
...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+++..... ..+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 67788899999999998877652 211 1 12334455666778899999999998875531 111 2334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKG--IEPDEI--T-Y-NSLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISYNII 445 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 445 (534)
+...+...|+++.|...+.++.... ...... . . ...+..+...|+.+.|...+........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 6677888999999999988875421 111111 1 0 1122444568899999999877654211111 1113456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 446 ILGFCKTRRINESIEVLAAMFEK----GCKPN-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..++...|++++|...++++... |..++ ..+...+..++...|+.++|...+.++++....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 77888999999999999988763 32221 245667778889999999999999999987643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-07 Score=84.89 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=147.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHH
Q 047017 46 RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA 125 (534)
Q Consensus 46 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 125 (534)
.+...|+++.|+..|-++. .....+.+.....++.+|+.+++.+..+. .....|..+..-|+..|+++.|
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHH
Confidence 3445667777776664432 12234445556667777777777666542 2334466677777777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc
Q 047017 126 NKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC 205 (534)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 205 (534)
.++|-+.- .++-.|..|.+.|+|..|.++-++.. |.......|..-..-.-+.|++.+|.++|-.+
T Consensus 785 e~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti--- 850 (1636)
T KOG3616|consen 785 EELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI--- 850 (1636)
T ss_pred HHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---
Confidence 77765432 23455667777777777777766553 22334444555555555666666666654333
Q ss_pred ccCChHHHHHHHHHH----------HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047017 206 KKGMVGQAFQFVRSL----------ESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC 275 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (534)
|..+.|++.+++. .+.....-..|...+..-+-..|+...|...|-+.. -|...++.|.
T Consensus 851 --~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk 919 (1636)
T KOG3616|consen 851 --GEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYK 919 (1636)
T ss_pred --cCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhh
Confidence 3333333333221 111111112344555566667777777777664432 2344455565
Q ss_pred hCCChhHHHHHHHHH--------------HHCCCCCC------HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047017 276 RDGKTEDAVDVLRAA--------------KEKGLTPD------AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV 335 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~--------------~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (534)
.++-|++|.++-+.- ...|-..- ......-+...+..+.++-|+++-+...+.. ...
T Consensus 920 ~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~ 996 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGE 996 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---Ccc
Confidence 666666655443210 00000000 0011112223334455555555554444432 122
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 047017 336 NYNTILAAFCKNGNADQALEIFEKLSDVG 364 (534)
Q Consensus 336 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 364 (534)
+...+...+...|++++|-+.|-+.++.+
T Consensus 997 vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 997 VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 33445555667888888888887776653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-10 Score=70.13 Aligned_cols=49 Identities=37% Similarity=0.836 Sum_probs=24.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 437 PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444555555555555555555555555555555555555555544443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-06 Score=91.35 Aligned_cols=338 Identities=12% Similarity=0.052 Sum_probs=206.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC------CCC--HhhHHHHHHH
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC------KPT--VITYTILIQA 185 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 185 (534)
......|++..+...++.+.......+..........+...|+++++...+..+...-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34445577776666665542211111222333445556678899999888887754310 111 1122223344
Q ss_pred HHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 047017 186 TMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD----VISYNMLLRTLLNMGKWEEGEKLMTEMISRGL- 260 (534)
Q Consensus 186 ~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 260 (534)
+...|++++|...++.. .......+ ....+.+...+...|++++|...+.+......
T Consensus 462 ~~~~g~~~~A~~~~~~a------------------l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~ 523 (903)
T PRK04841 462 AINDGDPEEAERLAELA------------------LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ 523 (903)
T ss_pred HHhCCCHHHHHHHHHHH------------------HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 55667777777766654 22111111 12345566777889999999999988765311
Q ss_pred --CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCC--C-CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 261 --EP--NVVTYSILISSLCRDGKTEDAVDVLRAAKEK----GLT--P-DAYSYDPLISAYCKDGRLDLAIEFLDYMISDG 329 (534)
Q Consensus 261 --~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 329 (534)
.+ ...++..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.....
T Consensus 524 ~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 524 HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 11 1234556677788999999999998887652 211 1 12234455666777899999999998876531
Q ss_pred --CCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CCCCHhh--H--HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 330 --CLP--DIVNYNTILAAFCKNGNADQALEIFEKLSDVG--CPPNVSS--Y--NTMFSALWSSGDKIRALGMISEMLSKG 399 (534)
Q Consensus 330 --~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--~--~~l~~~~~~~~~~~~a~~~~~~~~~~~ 399 (534)
..+ ....+..+...+...|+++.|...++.+.... ....... . ...+..+...|+.+.|...+.......
T Consensus 604 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 604 SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 111 23344556677888999999999998875431 1111111 0 112244456789999999887755421
Q ss_pred CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 400 IEPDE---ITYNSLISCLCRDGMVDEAVGLLVDMEST----RFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 400 ~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
..... ..+..+..++...|++++|...+++.... +..+. ..+...+..++...|+.++|...+.++++..
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11111 11345677788999999999999887643 22222 3456677788899999999999999998853
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=89.44 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hCCChhHHHHHHHHHHHCCCCCCHhcHHHHH
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC----RDGKTEDAVDVLRAAKEKGLTPDAYSYDPLI 306 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (534)
.....+.++.+.++++.|.+.++.|.+.+ +..+...++.++. ..+.+.+|..+|+++.+. ..+++.+.+.++
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 33344444555555555555555554331 1122222222221 122344455555554332 233444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHhh
Q 047017 307 SAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA-DQALEIFEKLSD 362 (534)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~ 362 (534)
.++...|++++|.+++.+....+ +.++.++..++.+....|+. +.+.+.+.++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 44444555555555444444332 22333444444444444443 333344444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-05 Score=73.27 Aligned_cols=393 Identities=12% Similarity=0.096 Sum_probs=219.1
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.+...|..||+.+-.+ ..++++..++++... .+..+..|..-+....+..+++....+|.+.+.. ..+...|...+.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHHH
Confidence 4777899999987777 999999999999875 3667889999999999999999999999998865 556778887776
Q ss_pred HHHhc-CCHH----HHHHHHHHHH-hCCCCCC-hhhHHHHHHHH---------HcCCCHHHHHHHHHHHHhCCCCCCHhh
Q 047017 115 GFCKA-NQIE----LANKVLDRLR-SRGFSPD-VVTYNIMIGSL---------CSRGMIESAFKVFDQLLRDNCKPTVIT 178 (534)
Q Consensus 115 ~~~~~-g~~~----~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~ 178 (534)
.-.+. |+.. ...+.|+-.. +.|+.+- -..|+..+..+ ..+.+++...++|++++...+..-...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 55443 2222 2334444433 3354432 33455555433 334456778888888875422111112
Q ss_pred HHHH------HHHH-------HhcCCHhHHHHHHHHh------------cccccCChHHHHHH--HHHH---HHcC-CC-
Q 047017 179 YTIL------IQAT-------MLEGQTDKAMKLLDEM------------GMCKKGMVGQAFQF--VRSL---ESRG-CQ- 226 (534)
Q Consensus 179 ~~~l------~~~~-------~~~g~~~~a~~~~~~~------------~~~~~~~~~~a~~~--~~~~---~~~~-~~- 226 (534)
|+.. ++.. -+..++..|.++++++ .....|-.++..++ .... ...+ ..
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 2211 1111 1233556666666665 22223333332221 1111 1111 00
Q ss_pred CC--------HhhHHHHHH---------------------HHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHH
Q 047017 227 PD--------VISYNMLLR---------------------TLLNMGK-------WEEGEKLMTEMISRGLEPNVVTYSIL 270 (534)
Q Consensus 227 ~~--------~~~~~~l~~---------------------~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 270 (534)
.+ ..+|...+. .+...|+ .+++..+++..+..-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001111111 1112222 23344444443332112222223322
Q ss_pred HHHHHhCC---ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 047017 271 ISSLCRDG---KTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP-DIVNYNTILAAFCK 346 (534)
Q Consensus 271 ~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 346 (534)
...--..- ..+.....++++.......-.-+|...++...+..-+..|..+|.++.+.+..+ +.....+++..|+
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 22111111 244444555555443222122356666666677777777777777777765555 4555666666554
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 047017 347 NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD--EITYNSLISCLCRDGMVDEAV 424 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 424 (534)
.++.+-|.++|+--.+. .+.++......+..+...++-..+..+|++....++.++ ..+|..++..-..-|+...+.
T Consensus 414 skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 56677777777765554 244555556667777777777777777777776644444 356777777777777777777
Q ss_pred HHHHHHHh
Q 047017 425 GLLVDMES 432 (534)
Q Consensus 425 ~~~~~~~~ 432 (534)
++-+++..
T Consensus 493 ~lekR~~~ 500 (656)
T KOG1914|consen 493 KLEKRRFT 500 (656)
T ss_pred HHHHHHHH
Confidence 77666543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-08 Score=84.60 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=133.2
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh---
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD---VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF--- 107 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 107 (534)
......+..+...+...|++++|...|+++.... +.+ ..++..++.++...|++++|...++.+.+..|.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4566678889999999999999999999998864 322 257788999999999999999999999988765554
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCh-hhH-----------------HHHHHHHHcCCCHHHHH
Q 047017 108 AYNALISGFCKA--------NQIELANKVLDRLRSRGFSPDV-VTY-----------------NIMIGSLCSRGMIESAF 161 (534)
Q Consensus 108 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~-----------------~~l~~~~~~~g~~~~a~ 161 (534)
++..+..++... |+++.|.+.++.+... .|+. ..+ ..+...+.+.|++.+|.
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 566677777665 7899999999999877 4442 221 13456788899999999
Q ss_pred HHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 162 KVFDQLLRDNC--KPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 162 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..++.+.+... +.....+..++.++...|++++|..+++.+
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987631 234578889999999999999999988876
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7e-08 Score=79.28 Aligned_cols=166 Identities=16% Similarity=0.121 Sum_probs=133.6
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMI 148 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 148 (534)
|.|..+ ......+...|+-+....+........+.+......++....+.|++..|...+.+..... ++|...|+.+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 445555 6777788888988888888888777778888888888999999999999999999988764 66889999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC
Q 047017 149 GSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD 228 (534)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 228 (534)
-+|.+.|+++.|..-|.+..+.. +-++...+.+.-.+.-.|+++.|..++... ... ..-+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a------------------~l~-~~ad 201 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPA------------------YLS-PAAD 201 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHH------------------HhC-CCCc
Confidence 99999999999999999988764 556677888888888889999888888775 222 2336
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
...-..+.......|++++|.++...-.
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 6777778888888999999988775543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-07 Score=82.48 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=53.5
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH--
Q 047017 274 LCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDG-RLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA-- 350 (534)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 350 (534)
+...+..++|+.+..++++.+. -+..++.....++...| ++++++..++++...+ +.+..+|......+.+.|..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 3344455555555555554321 12233333333333344 3445555555554442 22333444333333333331
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
++++.+++++.+.. +.+..+|.....++...|+++++++.++++++.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444443 344444544444444445555555555555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-06 Score=80.93 Aligned_cols=222 Identities=14% Similarity=0.172 Sum_probs=167.3
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047017 172 CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKL 251 (534)
Q Consensus 172 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 251 (534)
.+|-...-..+...+...|-...|..+++++ ..|..++.+|...|+..+|..+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------------------------emw~~vi~CY~~lg~~~kaeei 446 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------------------------EMWDPVILCYLLLGQHGKAEEI 446 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------------------------HHHHHHHHHHHHhcccchHHHH
Confidence 4555555566777777888888888877754 3566778888888888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 252 MTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL 331 (534)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (534)
..+-.+. +|++..|..++.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +
T Consensus 447 ~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-p 516 (777)
T KOG1128|consen 447 NRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-P 516 (777)
T ss_pred HHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-c
Confidence 8887774 678888888877776666678888877664332 22233333444788888888888877764 5
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 332 PDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
....+|.....+..+.+++..|.+.|....... |.+...|+.+..+|.+.++..+|...+.+..+.+ ..+...|...+
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENym 594 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYM 594 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechh
Confidence 567788888888888889999998888888764 7777889999999999999999999998888876 44555666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 047017 412 SCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~ 432 (534)
....+.|.+++|.+.+.++.+
T Consensus 595 lvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHH
Confidence 777888899999888888754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-05 Score=75.24 Aligned_cols=438 Identities=14% Similarity=0.123 Sum_probs=241.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHH
Q 047017 46 RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA 125 (534)
Q Consensus 46 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 125 (534)
..+..+++..|++...++.+.. |....+...-+-.+.+.|+.++|..+++......+.|..+...+-.+|...|+.++|
T Consensus 18 d~ld~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 3567789999999999988863 222222222233457899999999999988887778999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHhHHHH-HHHHhc
Q 047017 126 NKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG-QTDKAMK-LLDEMG 203 (534)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~-~~~~~~ 203 (534)
..+|++..+. .|+......+..+|.+.+++.+-.++--++.+. .+.+...|..++..+...- ..+.+.. ++
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~---- 169 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPIL---- 169 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchh----
Confidence 9999999987 778888888889999998886655555444443 4666677777776655432 1122111 11
Q ss_pred ccccCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCChhhHHHHHHHHHhCCChh
Q 047017 204 MCKKGMVGQAFQFVRSLESRG-CQPDVISYNMLLRTLLNMGKWEEGEKLMTE-MISRGLEPNVVTYSILISSLCRDGKTE 281 (534)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (534)
..-|.+.++.+.+.+ .-.+..-...-...+...|++++|.+++.. ..+.-...+...-+.-+..+...++|.
T Consensus 170 ------l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 170 ------LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred ------HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 112223333333332 111111222223334556677777777733 222222223333344455566667777
Q ss_pred HHHHHHHHHHHCCCCCCHhcHHHHHHH----------------HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 047017 282 DAVDVLRAAKEKGLTPDAYSYDPLISA----------------YCKDGRLDLAIEFLDYMISDGCLPDIV-NYNTILAAF 344 (534)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 344 (534)
+..++-.++...+.. | |...... +...+..+...+...+..... ..++. +.-.+...+
T Consensus 244 ~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rgp~LA~lel~kr~ 318 (932)
T KOG2053|consen 244 ELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRGPYLARLELDKRY 318 (932)
T ss_pred HHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccCcHHHHHHHHHHh
Confidence 777777776666432 1 2211111 111122333333333332221 01111 111111112
Q ss_pred HhCCCHHHHHHHHH------------------------------HHhhCCCCCCHh----h---HHHHHHHHHhcC----
Q 047017 345 CKNGNADQALEIFE------------------------------KLSDVGCPPNVS----S---YNTMFSALWSSG---- 383 (534)
Q Consensus 345 ~~~~~~~~A~~~~~------------------------------~~~~~~~~~~~~----~---~~~l~~~~~~~~---- 383 (534)
..-|+.+++.-.|- ..... .++.. . +...+..-...|
T Consensus 319 ~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~ 396 (932)
T KOG2053|consen 319 KLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEK 396 (932)
T ss_pred cccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 23455555443322 21111 01111 0 111111111222
Q ss_pred -CHHHHHHHHHHHH---HCC------CCCCHHH---------HHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCChhh
Q 047017 384 -DKIRALGMISEML---SKG------IEPDEIT---------YNSLISCLCRDGMVD---EAVGLLVDMESTRFRPTVIS 441 (534)
Q Consensus 384 -~~~~a~~~~~~~~---~~~------~~~~~~~---------~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~ 441 (534)
+.+....++.+.. +.| .-|+..+ .+.++..|.+.++.. +|+-+++.-... -+.|..+
T Consensus 397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~ 475 (932)
T KOG2053|consen 397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQT 475 (932)
T ss_pred CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHH
Confidence 1233334443332 222 2334322 356677787877766 344444444433 1334555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 442 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
--.+++.|.-.|-+..|.+.++.+--..++.|..-|. +.+.+...|++..+...++...+....
T Consensus 476 KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 476 KLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred HHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 5678888988899999999998886666665544433 455677788999999999988886543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-06 Score=77.43 Aligned_cols=215 Identities=13% Similarity=0.097 Sum_probs=149.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHH
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG-KTEDAVDVLRAAKEKGLTPDAYSYDPLISAY 309 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (534)
++..+-..+...+..++|+.+..+++..... +..+|+.-..++...| ++++++..++++.+.+.. +..+|......+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 3445555667788999999999999987422 4456666666666777 679999999999987543 556677666666
Q ss_pred HhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CC
Q 047017 310 CKDGRL--DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS---GD 384 (534)
Q Consensus 310 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 384 (534)
.+.|+. +.+..+++.+++.+ +.+..+|.....++...|+++++++.++++++.+ +.|...|+.....+.+. +.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 666663 67888998998875 5678899999999999999999999999999886 66778888877666554 22
Q ss_pred H----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047017 385 K----IRALGMISEMLSKGIEPDEITYNSLISCLCRD----GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK 451 (534)
Q Consensus 385 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 451 (534)
. ++.+.+..+++... +-+...|+.+...+... +...+|.+++.+..+.+ ..+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 35666666666542 34566676666666552 23345666666655432 2244455555555543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-07 Score=89.84 Aligned_cols=220 Identities=13% Similarity=0.054 Sum_probs=155.3
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh--------
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDV-------- 106 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 106 (534)
.....+..|+..+...|++++|.++.+...+.. |.....|..++..+...++..++.-+ .+....+.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 356678899999999999999999999877764 44566666666677777777766655 3332222222
Q ss_pred -----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047017 107 -----------FAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT 175 (534)
Q Consensus 107 -----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 175 (534)
.++..++.+|-+.|+.++|..+|+++++.. +-|+.+.|.++..|... ++++|.+++.++...
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 566777777777777777777777777775 34677777777777777 777777777776543
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 176 VITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR-GCQPDVISYNMLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 176 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (534)
+...+++..+.+++.++......+.+.-..+.+.+... +...-..++..+-..|-..++|+++..+++.
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 45556777777777777666666666666666666554 3333445566666778888899999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHH
Q 047017 255 MISRGLEPNVVTYSILISSLC 275 (534)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~ 275 (534)
+++.... |......++.+|.
T Consensus 249 iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhcCCc-chhhHHHHHHHHH
Confidence 9988533 6667777777775
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-07 Score=90.98 Aligned_cols=238 Identities=10% Similarity=0.061 Sum_probs=154.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
.+...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35667888888888899999999999877766 344 33444444466666665554433 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDK 385 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (534)
+.......++.....+...+... ..+..++..++.+|-+.|+.++|..+|+++.+.. |.|+.+.+.++..|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33344444554444455555553 3345578888999999999999999999999887 78889999999999888 99
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
++|..++.++... +...+++..+.++|.++.... +.+...+..+ .+++
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i----------------~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRI----------------ERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHH----------------HHHH
Confidence 9999988887653 445567777777777776642 1122222222 2222
Q ss_pred HHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 466 FEK-GCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 466 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
... |..--..++..+...|...++|+++..+++.+++..+.+.-+...++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 221 111123344455556666667777777777777777776666666666665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-07 Score=74.59 Aligned_cols=127 Identities=9% Similarity=-0.037 Sum_probs=102.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 389 LGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
..++++.++. .|+. +..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++++..
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455666653 3443 5566778888999999999999988763 336778888999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 469 GCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 469 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
++ .+...+..++.++...|++++|+..|+++++..|.++..+...+.+....
T Consensus 88 ~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 88 DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 63 47888888999999999999999999999999999998887777665544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-06 Score=70.09 Aligned_cols=190 Identities=15% Similarity=0.186 Sum_probs=127.8
Q ss_pred hCCChhHHHHHHHHHHHC---C-CCCCHh-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 047017 276 RDGKTEDAVDVLRAAKEK---G-LTPDAY-SYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (534)
...+.++..+++..+... | ..++.. .+..++-+....|+.+.|...++.+... ++.+..+-..-+..+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 345677788887777642 3 333333 3455566666778888888888887765 343444444444455667788
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
++|+++|+.+.+.+ |.|..++..-+...-..|..-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888887775 666677766666666777777777777777765 5667888888888888888888888888887
Q ss_pred HhCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcC
Q 047017 431 ESTRFRPTVISYNIIILGFCKTR---RINESIEVLAAMFEKG 469 (534)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 469 (534)
.-.. +.++..+..+...+.-.| +.+-|.+++.+.++..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7642 334555556666554433 5566777787777754
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-06 Score=81.92 Aligned_cols=271 Identities=14% Similarity=0.152 Sum_probs=202.4
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHH
Q 047017 225 CQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDP 304 (534)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (534)
.+|-...-..+...+...|-...|..++++.. .|..++.+|...|+..+|..+..+-.++ +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444455667788899999999999998754 4677889999999999999999888884 678888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 305 LISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (534)
+++......-+++|.++.+..... +-..+.......++++++.+.|+...+.+ |....+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888877777788888888765432 23333444455789999999999998875 7788999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAA 464 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 464 (534)
+..|.+.|...... -+.+...||.+-.+|.+.|+-.+|...+.+..+.+ ..+..+|...+....+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999988874 23356889999999999999999999999999887 44677788888888999999999999998
Q ss_pred HHHcC-CCCCHHHHHHHHHHHHcc-----CCHHHHH-----HHHHHHHHcCCCchHHHHHHHh
Q 047017 465 MFEKG-CKPNETTYVLLIEGIGYG-----GWRAEAM-----ELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 465 ~~~~~-~~~~~~~~~~l~~~~~~~-----g~~~~A~-----~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
+.+.. ..-|..+...++....+. ++-..+. +++-+.+..-..++..+...+.
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~ 675 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYAL 675 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhh
Confidence 87631 111444444444443321 2222222 2333344444446666665554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-07 Score=75.31 Aligned_cols=190 Identities=14% Similarity=0.096 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 332 PDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
.|... ..+...+...|+-+....+........ +.+.......+....+.|++..|...+++.... -++|...|+.+.
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lg 141 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLG 141 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHH
Confidence 34555 667778888899888888888765542 567777777899999999999999999999876 477899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047017 412 SCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRA 491 (534)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 491 (534)
-+|.+.|+++.|..-|.+..+.. .-++...+.+...+.-.|+.+.|..++......+. -|..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChH
Confidence 99999999999999999998863 33567788888899999999999999999987653 36777788888999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHh
Q 047017 492 EAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEI 527 (534)
Q Consensus 492 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 527 (534)
+|+.+...-... +........+.......+.|...
T Consensus 220 ~A~~i~~~e~~~-~~~~~~~~~l~~~~~~~~~~~~~ 254 (257)
T COG5010 220 EAEDIAVQELLS-EQAANNVAALRAAASQSGAWTQL 254 (257)
T ss_pred HHHhhccccccc-hhHhhHHHHHHHhhcccchhHHH
Confidence 999887654432 12223444556666666666543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.90 E-value=5e-07 Score=78.34 Aligned_cols=186 Identities=15% Similarity=0.074 Sum_probs=128.2
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDV---FAYNALISGFCKANQIELANKVLDRLRSRGFSPDVV--- 142 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 142 (534)
......+..++..+...|++++|...|+.+....|.++ .++..++.++...|++++|...++++.+. .|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 34566788888899999999999999999988776554 56788889999999999999999999876 33322
Q ss_pred -hHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHH
Q 047017 143 -TYNIMIGSLCSR--------GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQA 213 (534)
Q Consensus 143 -~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a 213 (534)
++..+..++... |++++|.+.++.+.... |.+...+..+...... ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----~~~------------------ 164 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----RNR------------------ 164 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----HHH------------------
Confidence 455555566544 77888999999888764 3333333222211100 000
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047017 214 FQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL--EPNVVTYSILISSLCRDGKTEDAVDVLRAAK 291 (534)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (534)
. ......+...+.+.|++.+|+..++....... +.....+..+..++...|++++|...++.+.
T Consensus 165 -------~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 165 -------L-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred -------H-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 00112455667888888888888888877632 1234677788888888888888888888776
Q ss_pred HC
Q 047017 292 EK 293 (534)
Q Consensus 292 ~~ 293 (534)
..
T Consensus 231 ~~ 232 (235)
T TIGR03302 231 AN 232 (235)
T ss_pred hh
Confidence 64
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=78.80 Aligned_cols=147 Identities=10% Similarity=0.084 Sum_probs=100.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL 124 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 124 (534)
-.|...|+++......+.+.. +.. .+...++.+++...++...+.+|.+...|..+...|...|++++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~---~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD---PLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC---ccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 457778888776554432211 100 11225666777777777777778888888888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHH-HcCCC--HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 125 ANKVLDRLRSRGFSPDVVTYNIMIGSL-CSRGM--IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..++..+...|++++|+..+++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888877763 33566666666653 56666 478888888887775 55677777777788888888888888887
Q ss_pred hccc
Q 047017 202 MGMC 205 (534)
Q Consensus 202 ~~~~ 205 (534)
+...
T Consensus 170 aL~l 173 (198)
T PRK10370 170 VLDL 173 (198)
T ss_pred HHhh
Confidence 7333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-07 Score=74.16 Aligned_cols=95 Identities=14% Similarity=-0.089 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
+...+..+...|++++|...|+.+...+|.+..++..+..++...|++++|...|++....+ +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 34445555566666666666666666556666666666666666666666666666666542 23455555666666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 047017 155 GMIESAFKVFDQLLRD 170 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~ 170 (534)
|++++|...|+..++.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-06 Score=72.55 Aligned_cols=126 Identities=11% Similarity=0.074 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--hHHH
Q 047017 382 SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGF-CKTRR--INES 458 (534)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 458 (534)
.++.+++...++...+.+ +.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555542 4456666666666666667777766666666653 22455555555543 45555 3667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 459 IEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
..+++++++.++. +...+..++..+...|++++|+..|+++++..|...+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 7777777666533 55666666666667777777777777777766655433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-06 Score=84.65 Aligned_cols=227 Identities=10% Similarity=0.012 Sum_probs=133.5
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCC---CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 263 NVVTYSILISSLCRDGKTEDAVDVLRAAKEK-GLTP---DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYN 338 (534)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (534)
+...|-..+......++.++|.++.+++... ++.- -...|.++++.-...|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3445666666666666777777666666542 1111 11244555555555566666667777766642 2234566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 047017 339 TILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD---EITYNSLISCLC 415 (534)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 415 (534)
.|...|.+.+.+++|.++++.|.+. +......|...+..+.++++-++|..++.++++. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 6667777777777777777777665 2345666777777777777777777777666654 222 233444445555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHH
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNE--TTYVLLIEGIGYGGWRAEA 493 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 493 (534)
+.|+.+.++.+|+...... +--...|+.+++.-.++|+.+.+..+|++++..++.|-. ..|...+..=-..|+-..+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 6677777777777666542 224556777777777777777777777777776665532 2333444333344554443
Q ss_pred HH
Q 047017 494 ME 495 (534)
Q Consensus 494 ~~ 495 (534)
+.
T Consensus 1691 E~ 1692 (1710)
T KOG1070|consen 1691 EY 1692 (1710)
T ss_pred HH
Confidence 33
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7e-06 Score=67.74 Aligned_cols=255 Identities=14% Similarity=0.105 Sum_probs=168.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
+-+.-.|.+..++.......... -+...-.-+.++|...|.+..... .+.... .|....+..+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33445677777776655544331 244444555667777776654332 222222 333444444444444444444
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 317 LAI-EFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 317 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
.-. ++.+.+.......+......-+..|+..+++++|++...... +......=...+.+..+.+-|...+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344444444334444445555667889999999998877622 3334444455667778889999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 396 LSKGIEPDEITYNSLISCLCR----DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
.+. .+..+.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+..+.++...|++++|..+++.++.....
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 874 255667767766654 45688999999999875 5788999999999999999999999999999987644
Q ss_pred CCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHcCCCch
Q 047017 472 PNETTYVLLIEGIGYGGWRAE-AMELANALVSMHAISR 508 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~ 508 (534)
++.+...++-+-...|...+ ..+.+.++...+|..+
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 78888888877777776655 5567888888888776
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-06 Score=85.37 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=110.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISR-GLEP---NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
+...|-..|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3344555555555555555555555555443 1110 11234444444444455555555555555431 1223455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHh
Q 047017 304 PLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPP--NVSSYNTMFSALWS 381 (534)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 381 (534)
.|...|.+.+..++|.++++.|.+. +......|...+..+.+.++.+.|..++.++.+. .|. ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 5555555566666666666655554 1234455555555555555555565555555543 122 23334444445555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCC
Q 047017 382 SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTV--ISYNIIILGFCKTRR 454 (534)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 454 (534)
.|+.+++..+|+..+.. .+-....|+.+++.-.++|+.+.++.+|+++...++.|-. ..|...+..--..|+
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 56666666666555544 2224455666666666666666666666666555544432 233344433333444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-06 Score=78.76 Aligned_cols=150 Identities=14% Similarity=0.126 Sum_probs=126.3
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHH
Q 047017 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMI 148 (534)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 148 (534)
.....+..........|++++|+..+..+.+..|.|+..+......+.+.|+.++|.+.++++... .|+ ...+..+.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a 381 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLA 381 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHH
Confidence 345566666677788999999999999999998999999999999999999999999999999988 666 66677888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc
Q 047017 149 GSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR 223 (534)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 223 (534)
.+|.+.|++.+|..+++...... +.++..|..|.++|...|+..++.....+. +...|.+++|...+....+.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG-YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998875 889999999999999999999888776664 44556666666665555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-05 Score=65.89 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=38.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC
Q 047017 239 LLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR----DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR 314 (534)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (534)
+.+..+++-|.+.+++|.+.. +..+.+.|+.++.+ .+...+|.-+|+++.++ .+|++.+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444455555555554331 33344434333322 23344455555554442 23444444444444455555
Q ss_pred HHHHHHHHHHHHHC
Q 047017 315 LDLAIEFLDYMISD 328 (534)
Q Consensus 315 ~~~a~~~~~~~~~~ 328 (534)
+++|..+++.++..
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555554444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-06 Score=82.31 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLIS 412 (534)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 412 (534)
+...+..+.....+.|..++|..+++.+.+.. |.+......++.++.+.+++++|+..+++..... +.+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 34444444444555555555555555544442 3444444444444555555555555554444431 223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+++++
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555444321 12234444444444444555555555544444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-06 Score=85.09 Aligned_cols=133 Identities=16% Similarity=0.107 Sum_probs=120.9
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 68 CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIM 147 (534)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 147 (534)
.+.+..++..|+.+..+.|.+++|..+++.+.+..|.+..++..++..+.+.+++++|...+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 466799999999999999999999999999999999999999999999999999999999999999883 2356667788
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 148 IGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 148 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999854 566889999999999999999999999987
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=68.34 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=83.7
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047017 59 FIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFS 138 (534)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 138 (534)
.++.++... +.+......++..+...|++++|...|+.+...+|.+...+..+..++...|++++|..++++....+ +
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 455555543 33556667777778888888888888888887777788888888888888888888888888877663 3
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 139 PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 139 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
.+...+..+..++...|++++|...|+...+..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456677777788888888888888888887753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.4e-05 Score=63.33 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=147.8
Q ss_pred hcCCHHHHHHHHHHHHHC---C-CCCChhh-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCH
Q 047017 241 NMGKWEEGEKLMTEMISR---G-LEPNVVT-YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRL 315 (534)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (534)
...+.++..+++..++.. | ..++..+ +..++-+....|+.+.|..+++.+... ++-+..+-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 456789999999888654 3 4555543 556667778899999999999998886 344555554445556778999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 316 DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
++|+++++.+++.+ +.|..++..-+...-..|+.-+|++-+....+. ++.|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999886 667777777777777888888999999888887 5889999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Q 047017 396 LSKGIEPDEITYNSLISCLCRDG---MVDEAVGLLVDMESTR 434 (534)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 434 (534)
.-.. |-++..+..+...+...| +...+.++|.+..+..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8752 334555566666554444 5678899999988753
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-05 Score=68.69 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=106.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDG 418 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 418 (534)
....+...|++++|+..++.+.+. .|.|+..+......+...++..+|.+.++++... .|+ ......+..++.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 344455678888888888887776 3677777777788888888888888888888875 444 455666777888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 419 MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
++.+|..++++.... .+.++..|..|..+|...|+..++.....+ .+...|++++|...+.
T Consensus 389 ~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHH
Confidence 888888888887765 355788888888888888887776654443 3455678888888888
Q ss_pred HHHHcC
Q 047017 499 ALVSMH 504 (534)
Q Consensus 499 ~~~~~~ 504 (534)
.+.+..
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 777765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00066 Score=66.14 Aligned_cols=433 Identities=15% Similarity=0.135 Sum_probs=231.7
Q ss_pred ChhhHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 36 KETQFMKLIKRSF--RAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 36 ~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
+...|..+++++. +.|+.++|..+++.....+ +.|..+...+-.+|...|+.++|..+|+.+.+..|. ......+.
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF 117 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF 117 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence 4455677777654 8999999999988876654 447888888899999999999999999999998766 77788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC----------HHHHHHHHHHHHhCC-CCCCHhhHHHH
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM----------IESAFKVFDQLLRDN-CKPTVITYTIL 182 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~-~~~~~~~~~~l 182 (534)
.+|.+.+++.+-.+.--++-+. ++-+.+.+-++++.+...-. ..-|.+.++.+.+.+ .-.+..-....
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 8999988877655444444333 23345555556655543211 123444555555432 11111111112
Q ss_pred HHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047017 183 IQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 262 (534)
.......|++++|.+++.. ...+.-...+...-+.-+..+...++|.+..++-.++...+..
T Consensus 197 l~iL~~~~k~~eal~~l~~-----------------~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D- 258 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAI-----------------TLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND- 258 (932)
T ss_pred HHHHHhcccHHHHHHHHHH-----------------HHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-
Confidence 2223344555555555522 2222223334444445566666777777777777777666422
Q ss_pred ChhhHHH----HHHH---------HHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHH---hcCCHHHHHHHH----
Q 047017 263 NVVTYSI----LISS---------LCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYC---KDGRLDLAIEFL---- 322 (534)
Q Consensus 263 ~~~~~~~----l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~---- 322 (534)
|-.+|.. ++.. +...+..+...+..++..... ....|-+-+.+.. .-|+.+++...|
T Consensus 259 dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 259 DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 2111111 1110 011112222222222222211 1112222222222 234554433322
Q ss_pred --------------------------HHHHHCCCCCCHH-------HHHHHHHHHHhCCC-----HHHHHHHHHHHh---
Q 047017 323 --------------------------DYMISDGCLPDIV-------NYNTILAAFCKNGN-----ADQALEIFEKLS--- 361 (534)
Q Consensus 323 --------------------------~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~A~~~~~~~~--- 361 (534)
...... .++.. .+...+..-.-.|. .+.-..++++..
T Consensus 336 g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~y 413 (932)
T KOG2053|consen 336 GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTY 413 (932)
T ss_pred CCCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 222211 11111 01112222222332 233444444432
Q ss_pred hCCC------CCCHh---------hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 362 DVGC------PPNVS---------SYNTMFSALWSSGDKI---RALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 362 ~~~~------~~~~~---------~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
+.|. -|... +.+.++..+.+.++.. +|+-+++...... +-+..+--.+++.|.-.|-+..|
T Consensus 414 e~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a 492 (932)
T KOG2053|consen 414 EKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDA 492 (932)
T ss_pred hccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhH
Confidence 2221 11211 3456677888888765 4555565555542 33556667788999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047017 424 VGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELA 497 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 497 (534)
.+++..+.-..+..|...|. +...+...|++..+...+....+.--..-.++-..++. -.+.|.+....+..
T Consensus 493 ~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~-AYr~g~ySkI~em~ 564 (932)
T KOG2053|consen 493 YELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIAL-AYRRGAYSKIPEML 564 (932)
T ss_pred HHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHH-HHHcCchhhhHHHH
Confidence 99999886655666655443 34556678899999998888776311112233333333 44566777766554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-06 Score=66.60 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
.....+...+...|++++|...|+.+...+ +.+...+..++.++...|++++|...++.....+|.+...+..+..++.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 446677788999999999999999998875 6688999999999999999999999999999988999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYN 145 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (534)
..|++++|.+.|+...+. .|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 999999999999999987 55554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.6e-06 Score=71.52 Aligned_cols=263 Identities=13% Similarity=0.017 Sum_probs=130.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHH
Q 047017 238 TLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDL 317 (534)
Q Consensus 238 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (534)
.+.+..++.+|+..+...++..+. +...|..-+..+...|+++++.--.+...+.... ..........++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 344555566666666666655322 3444444444455555555555444443332110 11122222233333333333
Q ss_pred HHHHH---------------HHHHHCCC-CCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047017 318 AIEFL---------------DYMISDGC-LPDIVNYNTI-LAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALW 380 (534)
Q Consensus 318 a~~~~---------------~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (534)
|...+ +.+..... +|.-..+..+ ..++.-.++.++|..+--...+.. +.+......-..++.
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLY 214 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccc
Confidence 33222 22222111 1222333332 345556777888877777766654 334444433344555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHH
Q 047017 381 SSGDKIRALGMISEMLSKGIEPDEITY-------------NSLISCLCRDGMVDEAVGLLVDMEST---RFRPTVISYNI 444 (534)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~ 444 (534)
..++.+.+...|++.+.. .|+...- ..-..-..+.|++..|.+.+.+.+.. +..|+...|..
T Consensus 215 y~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 667777888888777664 3443221 11122334567777777777666643 22334444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
...+..+.|+.++|+.--+++++.+.. =...+..-.+++...++|++|.+.++++.+....
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 555566667777777666666553210 1122233334555666777777777777665544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-07 Score=51.90 Aligned_cols=32 Identities=47% Similarity=1.003 Sum_probs=23.7
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047017 136 GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQL 167 (534)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 167 (534)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-06 Score=76.82 Aligned_cols=122 Identities=15% Similarity=0.046 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047017 374 TMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453 (534)
Q Consensus 374 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 453 (534)
.++..+...++++.|+.+++++.+.. |+. ...++..+...++-.+|.+++++..... +.+...+..-+..+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444445556666666666665542 332 2334555555555556666665555431 223444444455555666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 454 RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 454 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
+++.|+.+.+++.+.. +.+..+|..|+.+|...|++++|+..++.+-
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666665542 2244556666666666666666665555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-05 Score=63.64 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=61.6
Q ss_pred cCCHhHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHH
Q 047017 85 ERKSNKAVRVMEILEKYGEPD---VFAYNALISGFCKANQIELANKVLDRLRSRGFSPD--VVTYNIMIGSLCSRGMIES 159 (534)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 159 (534)
.++...+...++.+....+.+ ..+...+...+...|++++|...|+.+......+. ......+..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555555655566665555444 23334445555666666666666666665531111 1223345555666666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 160 AFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
|+..++..... ......+...+.+|...|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666553222 23334455566666666666666666654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-07 Score=66.53 Aligned_cols=81 Identities=21% Similarity=0.200 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhh
Q 047017 452 TRRINESIEVLAAMFEKGCK-PNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHL 530 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 530 (534)
.|+++.|+.+++++++.... ++...+..++.++.+.|++++|..++++ .+.++.++.....+++++..+|+|++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777765432 2344455567777777777777777777 555566666666667777777777777776
Q ss_pred hcc
Q 047017 531 ATK 533 (534)
Q Consensus 531 ~~k 533 (534)
+.|
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-05 Score=73.48 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=91.7
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSL 151 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (534)
......++..+...++++.|+.+|+++.+.. +.....++..+...++..+|.+++.+..... +.+...+......+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3344456666677778888888888887654 3355567777777788888888888877652 33566666666777
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
...++++.|+.+.+++.... |.+..+|..|+.+|...|+++.|+..++.+
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88888888888888887764 555668888888888888888888888776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-07 Score=50.24 Aligned_cols=32 Identities=38% Similarity=0.844 Sum_probs=16.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 434 RFRPTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-05 Score=61.89 Aligned_cols=127 Identities=11% Similarity=0.110 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---hhhHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD---VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD---VFAYN 110 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 110 (534)
...|..++..+ ..++...+...++.+.... +.+ ..+...+...+...|++++|...|+.+....+.+ ..+..
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34566677666 5899999999999998864 333 3455667788999999999999999999876222 34667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047017 111 ALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQL 167 (534)
Q Consensus 111 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 167 (534)
.+..++...|++++|+..++..... ......+.....+|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7889999999999999999775433 334556778889999999999999999875
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-05 Score=60.43 Aligned_cols=109 Identities=9% Similarity=-0.011 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFR--PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKP--NETTYVLL 480 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 480 (534)
.++..++..+...|++++|.+.+..+...... .....+..+..++...|+++.|...++.+....+.. ....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556667777888888888888888764211 113456667888888888888888888888753321 24567777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchHHHHH
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAISRDTFKR 513 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 513 (534)
+.++.+.|++++|...++++++..|.++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 888888889999999999998888877755443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00054 Score=60.70 Aligned_cols=277 Identities=9% Similarity=-0.026 Sum_probs=159.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
.......+.+..++..|+..+..++... +.+...|..-+..+...|++++|..-.+.-.+..+...........++...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 4455567778889999999999999875 556777777788888889999888777666655544444555555555555
Q ss_pred CCHHHHHHHHHHH---------------HhCC-CCCChhhHHHH-HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 120 NQIELANKVLDRL---------------RSRG-FSPDVVTYNIM-IGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 120 g~~~~a~~~~~~~---------------~~~~-~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
++..+|.+.++.- .... -+|....|..+ ..++.-.|++++|..+--.+++.. +.+......-
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhc
Confidence 5555555444421 1110 11223334333 355667788888888777777654 3344433333
Q ss_pred HHHHHhcCCHhHHHHHHHHhcccccCChHH--HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 047017 183 IQATMLEGQTDKAMKLLDEMGMCKKGMVGQ--AFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG- 259 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 259 (534)
..++.-.++.+.+...|++..-......+. +..-.+. ...+..-.+-..+.|++..|.+.|.+.+...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~---------le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK---------LEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH---------HHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 344445666677766666551111100000 0000000 0112222334566777788888777776542
Q ss_pred --CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 260 --LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD 328 (534)
Q Consensus 260 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (534)
..|+...|........+.|+..+|+.-.+...+.+.. -...+..-..++...++|+.|.+-++...+.
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666666667777777777777776654210 1122333344555667777777777766654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-05 Score=61.19 Aligned_cols=100 Identities=10% Similarity=-0.019 Sum_probs=87.7
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG 149 (534)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 149 (534)
.+.+....+...+...|++++|..+|+.+...+|.+...|..|..++-..|++++|+..|......+ +.|+..+..+..
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3556677778888899999999999999999999999999999999999999999999999998885 347888888999
Q ss_pred HHHcCCCHHHHHHHHHHHHhC
Q 047017 150 SLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~ 170 (534)
++...|+.+.|.+.|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988875
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.3e-05 Score=59.60 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCK--PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAYNAL 112 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l 112 (534)
..+..+...+.+.|++++|.+.|+.+.+.... ....++..++.++...|+++.|...|+.+....|. ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34555566666666666666666666553211 11334555666666666666666666666554422 23445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 047017 113 ISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
..++.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55666666666666666665554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0021 Score=57.90 Aligned_cols=435 Identities=12% Similarity=0.087 Sum_probs=216.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhh------HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVM------CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
+-+++++.+|.++|.++.+.. ..++.. -+.++++|.. ++.+.....+....+..+.....-.-..-.+.+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 447899999999999987652 222222 2456666653 55777777666666665544433333333455789
Q ss_pred CHHHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC----CCCHhhHHHH
Q 047017 121 QIELANKVLDRLRSR--GFSP------------DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC----KPTVITYTIL 182 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l 182 (534)
.+.+|.+.+..-.++ +..+ |...-+..+.++...|++.++..+++++...-. .-+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 999999988776654 2221 111224567788899999999999999876533 3677888875
Q ss_pred HHHHHhc--------CCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc------CCCCCHhhHHHHHHHHHhcC--CHH
Q 047017 183 IQATMLE--------GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR------GCQPDVISYNMLLRTLLNMG--KWE 246 (534)
Q Consensus 183 ~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~--~~~ 246 (534)
+-.+.+. ...+-....++.+ .-+.+++... .+-|.......++....-.. ...
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemi-----------lfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~ 242 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMI-----------LFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLP 242 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHH-----------HHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhcc
Confidence 5444322 1222222233222 1111222111 12233333333433332211 112
Q ss_pred HHHHHHHHHHHCCCCCChhh-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC----CHhcHHHHHHHHHhcCCHHHHHHH
Q 047017 247 EGEKLMTEMISRGLEPNVVT-YSILISSLCRDGKTEDAVDVLRAAKEKGLTP----DAYSYDPLISAYCKDGRLDLAIEF 321 (534)
Q Consensus 247 ~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 321 (534)
--.++++.....-+.|+... ...+...+.. +.+++..+.+.+....+.+ -..+|..++....+.++...|...
T Consensus 243 ~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~ 320 (549)
T PF07079_consen 243 PLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQY 320 (549)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22333333333334444332 2223333322 4444444444433321110 123566666667777777777666
Q ss_pred HHHHHHCCCC--------CCHHHHHHHHHH-HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHH---HHHHHhcCC-HHHH
Q 047017 322 LDYMISDGCL--------PDIVNYNTILAA-FCKNGNADQALEIFEKLSDVGCPPNVSSYNTM---FSALWSSGD-KIRA 388 (534)
Q Consensus 322 ~~~~~~~~~~--------~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~-~~~a 388 (534)
+.-+...+.. ....++..++.. =...-+...=+.+|+.....++ ........+ +.-+.+.|. -++|
T Consensus 321 l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di-DrqQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 321 LALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI-DRQQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 6555443211 111222222210 0001122233444554444321 112222222 334555665 6677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH----HHHH---hcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHH--HHhcCCh
Q 047017 389 LGMISEMLSKGIEPDEITYNSLI----SCLC---RDGMVDEAVGLLVDMESTRFRPTV----ISYNIIILG--FCKTRRI 455 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~ 455 (534)
+.+++.+.+-. +-|...-+.+. ..|. ....+.+-..+-+-+.+.|++|-. ..-|.|.++ +...|++
T Consensus 400 lnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 400 LNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 77777776531 22322222211 1222 123344444444445556666532 233333332 4457777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 456 NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
.++.-+-.-..+ +.|++.+|..++-++....++++|..++..+
T Consensus 479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 777654443333 4677788887777777777888888777665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=72.56 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
......++..|++++|+..|+++++.+ +.+...|..++.++...|++++|+..++.+...+|.+..+|..+..+|...|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345667788888889998888888875 5677888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhh
Q 047017 121 QIELANKVLDRLRSRGFSPDVVT 143 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~ 143 (534)
++++|...|++.... .|+...
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~ 105 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSR 105 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHH
Confidence 888888888888876 444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.3e-05 Score=71.89 Aligned_cols=111 Identities=11% Similarity=-0.116 Sum_probs=85.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047017 411 ISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWR 490 (534)
Q Consensus 411 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 490 (534)
...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++.+. .+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 345567788888888888887763 23566777778888888888888888888888653 3667777888888888888
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 491 AEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 491 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
++|+..|+++++.+|.++.....+.++......
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 888888888888888888888777777666543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-05 Score=57.96 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+..+...+...|++++|+..++++.+.. +.+...+..++.++...|++++|...++......+.+..++..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4555666666777777777777766553 334455666666666667777777777776666655556666666666666
Q ss_pred CCHHHHHHHHHHHHh
Q 047017 120 NQIELANKVLDRLRS 134 (534)
Q Consensus 120 g~~~~a~~~~~~~~~ 134 (534)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 777776666666554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-05 Score=60.31 Aligned_cols=91 Identities=9% Similarity=-0.019 Sum_probs=48.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
+...+...|++++|.++|+.+...+ +.+..-|..|+.++-..|++++|+..|......++.++..+..+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 3344445555555555555554443 344455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHh
Q 047017 123 ELANKVLDRLRS 134 (534)
Q Consensus 123 ~~a~~~~~~~~~ 134 (534)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-06 Score=60.15 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=50.7
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 50 AGKFDESLYFIESMVANGCK-PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 50 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|..+++. .+.++.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777777765421 2444555567777777777777777766 333344445555667777777777777777
Q ss_pred HHH
Q 047017 129 LDR 131 (534)
Q Consensus 129 ~~~ 131 (534)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-05 Score=66.56 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=49.6
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHH
Q 047017 81 KFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIES 159 (534)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 159 (534)
-+.+.+++.+|+..|..+++..|.|+..|..-..+|.+.|.++.|++-.+..+.. .| -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 3445555666666666666555555555555555666666666665555555544 22 24455555555666666666
Q ss_pred HHHHHHHHHhC
Q 047017 160 AFKVFDQLLRD 170 (534)
Q Consensus 160 a~~~~~~~~~~ 170 (534)
|.+.|++.++.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 66655555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00061 Score=58.60 Aligned_cols=165 Identities=11% Similarity=0.092 Sum_probs=116.5
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh---hh
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVM---CTKLIKKFFQERKSNKAVRVMEILEKYGEPDV---FA 108 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~ 108 (534)
.++..+......+...|++++|...|+.+.... |.+..+ ...++.++.+.+++++|...++...+..|.++ .+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 456666677788899999999999999998864 222333 35677899999999999999999999884443 33
Q ss_pred HHHHHHHHHhcC---------------C---HHHHHHHHHHHHhCCCCCChhh------------------HHHHHHHHH
Q 047017 109 YNALISGFCKAN---------------Q---IELANKVLDRLRSRGFSPDVVT------------------YNIMIGSLC 152 (534)
Q Consensus 109 ~~~l~~~~~~~g---------------~---~~~a~~~~~~~~~~~~~~~~~~------------------~~~l~~~~~ 152 (534)
+..++.+....+ + ...|.+.|+.+++. -|+..- -..+...|.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~ 186 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT 186 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433321111 2 34577888888776 555321 112345678
Q ss_pred cCCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 153 SRGMIESAFKVFDQLLRD--NCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+.|.+..|..-++.+++. +.+........+..+|...|..++|.++...+
T Consensus 187 ~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 187 KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 889999999999999875 22344556778888999999999988876654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.1e-05 Score=64.74 Aligned_cols=106 Identities=12% Similarity=0.024 Sum_probs=79.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAE 492 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 492 (534)
-..+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+.. -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4556788888888888888763 235666777778888888888888888888776432 46778888888888888888
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHhhcch
Q 047017 493 AMELANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 493 A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
|++.|+++++++|.+......|..+-..
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 8888888888888888666666554433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00013 Score=59.49 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKP--DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
..+..+...+...|++++|...|+++++....+ ....+..++.++...|++++|...+++.....|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345666666777777777777777776543222 134666677777777777777777777776666666666666666
Q ss_pred HHhcCCHHHHH
Q 047017 116 FCKANQIELAN 126 (534)
Q Consensus 116 ~~~~g~~~~a~ 126 (534)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 66666654443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-05 Score=55.04 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
.+..++..+...|++++|...++.+.+..+.+..++..+..++...|++++|.+.++...... +.+...+..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 355667777788888888888888887777677778888888888888888888888877663 3344567777778888
Q ss_pred CCCHHHHHHHHHHHHhC
Q 047017 154 RGMIESAFKVFDQLLRD 170 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~ 170 (534)
.|+++.|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888777654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=52.94 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=47.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
+...+...|++++|...|+++++..+. +...+..++.++...|++++|..+|+++++..|.+|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888888877532 677777888888888888888888888888877664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00033 Score=54.71 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=74.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHH
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGF-SPDVVTYNI 146 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 146 (534)
.|+..-...+..++...|++.+|...|++...-- ..+......+..+....+++..|...++.+.+.+. ..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555666667777777777777776666543 55666666666666667777777777776665520 012344455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 196 (534)
+.+.+...|.+..|...|+..... -|+..........+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 666677777777777777766654 344443333344445556554443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0066 Score=54.75 Aligned_cols=133 Identities=9% Similarity=0.005 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...|..|++.+...|.+++..++++++... .+.-+.+|..-+..-...+++.....+|...+.. ..+...|...+..
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~l~ldLW~lYl~Y 118 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-SLNLDLWMLYLEY 118 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-hccHhHHHHHHHH
Confidence 5567999999999999999999999998754 3556778888888777888999999999988875 5557778777766
Q ss_pred HHhcCCH------HHHHHHHHHHHh-CCCCCC-hhhHHHHHHHHH---cCCC------HHHHHHHHHHHHhC
Q 047017 116 FCKANQI------ELANKVLDRLRS-RGFSPD-VVTYNIMIGSLC---SRGM------IESAFKVFDQLLRD 170 (534)
Q Consensus 116 ~~~~g~~------~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~~g~------~~~a~~~~~~~~~~ 170 (534)
-.+.++. -...+.|+-... .++.|- ...|+..+..+. ..|. .+.....|.+++..
T Consensus 119 IRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 119 IRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 5554321 112333443332 345553 344555444332 2333 45566667777654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.2e-05 Score=65.42 Aligned_cols=129 Identities=14% Similarity=0.081 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ-ERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
+|..+++...+.+..+.|+.+|.++.+.+ ..+...|...+..-.. .++.+.|.++|+...+..+.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 68888888888888999999999998543 4456677766666445 566666999999999888999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSRGFSPDV----VTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
..|+.+.|..+|++.... -+.. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999876 3333 47888888888889999999999888875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.1e-05 Score=56.39 Aligned_cols=94 Identities=17% Similarity=0.087 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCKP--NETTYVLLIEGI 484 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 484 (534)
.+..++-..|+.++|..+|++....|.... ...+..+..++...|++++|..++++.....+.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 456677788999999999999998876654 4466678888999999999999999988753221 223333455577
Q ss_pred HccCCHHHHHHHHHHHHH
Q 047017 485 GYGGWRAEAMELANALVS 502 (534)
Q Consensus 485 ~~~g~~~~A~~~~~~~~~ 502 (534)
...|+.++|.+.+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888999999988876654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00027 Score=52.53 Aligned_cols=94 Identities=12% Similarity=0.001 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhHHHHHH
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPD--VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAYNALIS 114 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~ 114 (534)
...+...+-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+++......|. +......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 44556667778888888888888877664433 445666777777888888888888777766433 4444444455
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047017 115 GFCKANQIELANKVLDRLR 133 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~ 133 (534)
++...|+.++|++.+-...
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 6667777777777776555
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=53.35 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=51.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 450 CKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 450 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
...|++++|+.+|+++.+..+. +...+..++.+|.+.|++++|.++++++....|.++..+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678888999999888887543 77777788888899999999999999998888887766655543
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.6e-05 Score=65.42 Aligned_cols=269 Identities=14% Similarity=0.088 Sum_probs=166.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHH--Hc--C--CCChhhHHHHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPD----VVMCTKLIKKFFQERKSNKAVRVMEILE--KY--G--EPDVFAYNALI 113 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~--~~~~~~~~~l~ 113 (534)
...+++.|+....+.+|+.+++.| ..| +.+|..|+++|.-.+++++|+++...=+ .+ + .....+-..+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 357899999999999999999987 333 3467788889999999999988653211 11 1 12223334455
Q ss_pred HHHHhcCCHHHHHHHHHH----HHhCCCC-CChhhHHHHHHHHHcCCC--------------------HHHHHHHHHHHH
Q 047017 114 SGFCKANQIELANKVLDR----LRSRGFS-PDVVTYNIMIGSLCSRGM--------------------IESAFKVFDQLL 168 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~ 168 (534)
..+--.|.+++|.-...+ ..+.|-. .....+..+..+|...|+ ++.|.+.|.+=+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 555566777777654333 2222211 124455566677765543 223344443322
Q ss_pred h----CCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhc
Q 047017 169 R----DNC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQ-PDVISYNMLLRTLLNM 242 (534)
Q Consensus 169 ~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 242 (534)
+ .|- -.--.+|..|.+.|.-.|+++.|+...+.- +.+ ..+.|-. .....+..+.+++.-.
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~R-----------L~i---a~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLR-----------LEI---AQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHH-----------HHH---HHHhhhHHHHHHhhcccchhhhhh
Confidence 1 110 011235666677777778888877665432 111 1122211 1345677888999999
Q ss_pred CCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-----CCCCCHhcHHHHHHHHHhc
Q 047017 243 GKWEEGEKLMTEMISR----GL-EPNVVTYSILISSLCRDGKTEDAVDVLRAAKEK-----GLTPDAYSYDPLISAYCKD 312 (534)
Q Consensus 243 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 312 (534)
|+++.|.+.|+..... |- .........+...|.-..++++|+.++.+-... +..-....+..+..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999988775432 21 223445667888888888899999988765431 1122456788899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 047017 313 GRLDLAIEFLDYMIS 327 (534)
Q Consensus 313 ~~~~~a~~~~~~~~~ 327 (534)
|..++|+.+.+...+
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999988776554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00029 Score=60.18 Aligned_cols=112 Identities=10% Similarity=0.047 Sum_probs=80.4
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 047017 58 YFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN---QIELANKVLDRLRS 134 (534)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~ 134 (534)
.-++.-++.+ |.|.+.|..|+.+|...|++..|...|....+..++++..+..+.+++..+. ...++..+|+++..
T Consensus 143 a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3334334443 6677788888888888888888888888888877788887777777766553 34567778888776
Q ss_pred CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 135 RGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 135 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
.. +.|+.+...|...+...|++.+|...++.|.+..
T Consensus 222 ~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 222 LD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred cC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 63 3356666677777788888888888888887764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00035 Score=56.94 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=58.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 047017 104 PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD--VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTI 181 (534)
Q Consensus 104 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 181 (534)
.....+..++..+...|++++|...|++....+..+. ...+..+..++.+.|++++|...+++..... +.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3444566666667777777777777777665422211 3456667777777777777777777777654 445566666
Q ss_pred HHHHHHhcCCHhHHH
Q 047017 182 LIQATMLEGQTDKAM 196 (534)
Q Consensus 182 l~~~~~~~g~~~~a~ 196 (534)
++.++...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 677776666654443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=51.31 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=34.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP 104 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 104 (534)
+...+...|++++|+..|+++++.. |.+..++..++.++...|++++|...|+.+.+..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3445556666666666666665554 445555666666666666666666666665555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00061 Score=65.45 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=94.4
Q ss_pred CCCCHhhHHHHHHHHHhc--C---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 047017 365 CPPNVSSYNTMFSALWSS--G---DKIRALGMISEMLSKGIEPD-EITYNSLISCLCRD--------GMVDEAVGLLVDM 430 (534)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 430 (534)
.+.+...|...+++.... + +...|..+|+++.+. .|+ ...+..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356667777776664332 2 355777777777774 444 33444333333221 1223444444443
Q ss_pred HhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 431 EST-RFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 431 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
... ....+...|..+.......|++++|...++++++.+ |+...|..+++.+...|+.++|.+.++++++++|..+.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 332 123345677777777777899999999999999875 57888899999999999999999999999999998874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00048 Score=61.24 Aligned_cols=98 Identities=11% Similarity=0.036 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----h-hhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--HHH
Q 047017 407 YNSLISCLCRDGMVDEAVGLLVDMESTRFRPT-----V-ISYNIIILGFCKTRRINESIEVLAAMFEKG--CKPN--ETT 476 (534)
Q Consensus 407 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~ 476 (534)
+..+...+.+.|++++|.++|+++.......+ . ..+...+-++...||+..|.+.+++..... +..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34444455555555555555555543311111 1 111222334444555555555555554431 1111 223
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHHHHcC
Q 047017 477 YVLLIEGIGY--GGWRAEAMELANALVSMH 504 (534)
Q Consensus 477 ~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 504 (534)
...|+.++-. ...++++..-|+.+.+++
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 3344444442 223444444444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.8e-05 Score=52.11 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=44.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCC
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG-WRAEAMELANALVSMHA 505 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 505 (534)
++..|..+...+...|++++|+..|+++++.++. +...+..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3455666666677777777777777777766422 5566666666777776 57777777777766654
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-05 Score=52.81 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=24.5
Q ss_pred hcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 84 QERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
..|++++|+.+|+.+....|.+..++..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444443
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.01 Score=53.50 Aligned_cols=432 Identities=10% Similarity=0.049 Sum_probs=244.2
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047017 58 YFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGF 137 (534)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 137 (534)
++=+++... |.|...|..|+.-+..+|..++.++.++++..-.|--+.+|...+..-...+++.....+|.+.+..
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-- 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-- 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--
Confidence 455555443 7789999999999999999999999999999877778889999999888899999999999998877
Q ss_pred CCChhhHHHHHHHHHcCCCH------HHHHHHHHHHHhC-CCCC-CHhhHHHHHHHH---H------hcCCHhHHHHHHH
Q 047017 138 SPDVVTYNIMIGSLCSRGMI------ESAFKVFDQLLRD-NCKP-TVITYTILIQAT---M------LEGQTDKAMKLLD 200 (534)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~---~------~~g~~~~a~~~~~ 200 (534)
..+...|...+..-.+.+.. ....+.|+-.+.. ++.| ....|+..+... - .+.+++.....+.
T Consensus 106 ~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 106 SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 44677777777655554322 2334555555542 3333 223344433322 1 2334556666777
Q ss_pred HhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CChhh--------
Q 047017 201 EMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR--GLE----PNVVT-------- 266 (534)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~-------- 266 (534)
++.-...|+.++-++-++..... .+..|-...+. -..--+-.|...++++... |.. .+..+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 77666777777777666554432 11111111110 0001122334444433221 111 11122
Q ss_pred ---HHHHHHHHHhC-----CC-h-hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047017 267 ---YSILISSLCRD-----GK-T-EDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVN 336 (534)
Q Consensus 267 ---~~~l~~~~~~~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (534)
|...|..-... |+ . ...--++++.... +...+.+|..-..-+...++-+.|+....+.... .|+ .
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L 335 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--L 335 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--h
Confidence 22222211111 11 0 1111222222221 1223333333333344566667777666554332 122 2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh--------------CCCC---------------CCHhhHHHHHHHHHhcCCHHH
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSD--------------VGCP---------------PNVSSYNTMFSALWSSGDKIR 387 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~~---------------~~~~~~~~l~~~~~~~~~~~~ 387 (534)
...+...|.-.++.+.....|++... .+.. .-..+|...+....+....+.
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHH
Confidence 22233333333344333333333211 0110 012234455555666677888
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCChHHHHHHHHHH
Q 047017 388 ALGMISEMLSKG-IEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVIS-YNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 388 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
|..+|-++.+.+ +.++..++++++..++ .|+...|..+|+--... -||... .+..+..+...++-+.|..+|+..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 888888888777 5566777788777665 57788888888765544 334333 345666677788888888888866
Q ss_pred HHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 466 FEKGCKPN--ETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 466 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
+.. +..+ ..+|..++.-=..-|+...+..+-+++.+..|..
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 653 1222 4677777777777888888888888888877754
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0032 Score=54.24 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY---NALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+...+..+...|++++|...|+.+....|.+..+- ..++.++.+.++++.|...+++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33444444555666666666666655554443332 34455555556666666666555554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00018 Score=58.43 Aligned_cols=64 Identities=6% Similarity=-0.157 Sum_probs=32.2
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
...+..++..+...|++++|...|+.+....+. ...++..+..++...|++++|.+.+++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444555555555555555555555443311 1234555555555555555555555555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-05 Score=53.19 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH-HHHHhhhhhcc
Q 047017 473 NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD-VYKEISHLATK 533 (534)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~k 533 (534)
+..+|..++..+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|...+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 89999887654
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.5e-05 Score=60.33 Aligned_cols=79 Identities=8% Similarity=-0.024 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKP--NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
.|..++..+...|++++|...+++++.....+ ...++..+...+...|++++|+..++++++..|.....+..++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444555555566666666665555432221 1234555555566666666666666666666555555555555555
Q ss_pred c
Q 047017 519 P 519 (534)
Q Consensus 519 ~ 519 (534)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 5
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0015 Score=58.00 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hh-hHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-----VV-TYSILISSLCRDGKTEDAVDVLRAAKEK 293 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (534)
.+..+...+.+.|++++|.++|+++.......+ .. .+...+-++...||...|...++.....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555556666666666666666554322111 11 1222233444556666666666655543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00034 Score=59.71 Aligned_cols=111 Identities=11% Similarity=0.061 Sum_probs=95.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQER---KSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
+...|..|.+.|...|+++.|...|+++.+.. ++++..+..+..++..+. .-.++..+|+++.+.++.+..+...+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 67789999999999999999999999999976 778888888888775543 34689999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG 149 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 149 (534)
...+...|++.+|...|+.|.+. -|....+..++.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 99999999999999999999988 444455555554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00054 Score=59.35 Aligned_cols=102 Identities=12% Similarity=0.022 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CChhhHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKP--DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGE---PDVFAYNAL 112 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l 112 (534)
..|...+..+.+.|++++|+..|+.+++..+.. ...++..++.++...|++++|...|+.+....| ....++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 344554444567789999999999988763211 136788888888899999999999998887653 345667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDV 141 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 141 (534)
+.++...|+.++|..+|+.+.+. .|+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 77888888888888888888876 4543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.6e-05 Score=43.87 Aligned_cols=33 Identities=36% Similarity=0.800 Sum_probs=19.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047017 143 TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT 175 (534)
Q Consensus 143 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 175 (534)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666666555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.3e-05 Score=43.42 Aligned_cols=33 Identities=39% Similarity=0.914 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00069 Score=59.91 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS-SGDKIRALGMISEMLSKGIEPDEITYNSLISCLC 415 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 415 (534)
|..++....+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|..+|+...+. +..+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444444445555555555554332 2233444444444222 33444455555555543 3334444555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTV---ISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
..|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555443 11111 2444444444444555555555444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.5e-05 Score=42.91 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
+|+.++.+|.+.|+++.|..+++.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00076 Score=58.45 Aligned_cols=106 Identities=10% Similarity=-0.003 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCK--PNETTYVLL 480 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 480 (534)
..|...+....+.|++++|...|+.+++..+... ...+..+..+|...|++++|...|+.+++..+. .....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555667899999999999987622211 346778889999999999999999999875322 235566667
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
+.++...|++++|.++|+++++..|.+..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 788889999999999999999999987744
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0011 Score=63.69 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=67.4
Q ss_pred CCCHhhHHHHHHHHHh--cC---CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhC
Q 047017 69 KPDVVMCTKLIKKFFQ--ER---KSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN--------QIELANKVLDRLRSR 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~ 135 (534)
+.+..+|...+++... .+ ....|..+|+++.+.+|....++..+..++.... +...+.+..++....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 5555555555554322 11 2445666666666666665555555444333221 122333333333222
Q ss_pred -CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 136 -GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 136 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+.+...|..+...+...|++++|...++++...+ |+...|..++..+...|+.++|.+.+++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112234455555444455566666666666666553 35556666666666666666666666655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.004 Score=52.20 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=36.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCch---HHHHHHHhhcchHHHHHHh
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISR---DTFKRLNRTFPLLDVYKEI 527 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~ 527 (534)
.+++.|.+.|.+..|..-++.+++..|.++ +++..++..|..+|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 466778888888888888888888888766 5677777888777776644
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0092 Score=46.98 Aligned_cols=132 Identities=14% Similarity=0.041 Sum_probs=72.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFR-PTVISYNI 444 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 444 (534)
.|....-..+..+....|++.+|...|++...--.--|......+.++....+++..|...++++.+.... -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34455555566666666666666666666655434445555556666666666666666666666554210 01223344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANA 499 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 499 (534)
+.+.+...|++..|...|+.+++. -|+..........+.++|+.+++..-+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 556666666666666666666654 33444433444445566655555444333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00044 Score=63.57 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=98.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047017 329 GCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDV--GCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEIT 406 (534)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 406 (534)
+.+.+......++..+....+.+.+..++.+.... ....-+.+...+++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677778888888888888898888888765 2222334556899999999999999999998888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 047017 407 YNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT 452 (534)
Q Consensus 407 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 452 (534)
++.|+..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888776666777766666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.8e-05 Score=42.77 Aligned_cols=32 Identities=28% Similarity=0.590 Sum_probs=18.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 047017 143 TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP 174 (534)
Q Consensus 143 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 174 (534)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0019 Score=54.09 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=105.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh---hHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGC--KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF---AYN 110 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 110 (534)
++..+......+...|++.+|...|+.+....+ +....+...++.++.+.|+++.|...++.+....|.++. ++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 455667778889999999999999999987532 334567788899999999999999999999988755443 343
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhh------------------HHHHHHHHHcCCCHHHHH
Q 047017 111 ALISGFCKA-----------NQIELANKVLDRLRSRGFSPDVVT------------------YNIMIGSLCSRGMIESAF 161 (534)
Q Consensus 111 ~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~------------------~~~l~~~~~~~g~~~~a~ 161 (534)
.++.++... +...+|...|+.++.. -|+..- -..+...|.+.|.+..|.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 334333222 2345778888888776 444321 112456788889999999
Q ss_pred HHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCHhHHH
Q 047017 162 KVFDQLLRDNCKPT---VITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 162 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~ 196 (534)
.-++.+++.- |.+ ......++.+|.+.|..+.+.
T Consensus 162 ~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999988762 222 234566777888888777443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=48.52 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=51.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
..|...+++++|.++++.++..++. +...+...+.++...|++++|.+.++++++..|.++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4567788888888888888887543 667777788888888888888888888888888777655443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00044 Score=61.12 Aligned_cols=272 Identities=16% Similarity=0.100 Sum_probs=167.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHH--Hh--CCCCC-ChhhHHHHHHH
Q 047017 80 KKFFQERKSNKAVRVMEILEKYGEPDV----FAYNALISGFCKANQIELANKVLDRL--RS--RGFSP-DVVTYNIMIGS 150 (534)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~--~~--~~~~~-~~~~~~~l~~~ 150 (534)
.-+++.|+......+|+.+.+.+..+. .+|..+..+|.-.+++++|+++...= +. .|-+. ....-..|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 457899999999999999999885443 45666777777888999998875431 11 11111 12233345555
Q ss_pred HHcCCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHhcCCH-------------hHHHHHHHHhcccccCChHH
Q 047017 151 LCSRGMIESAFKVFDQLL----RDNC-KPTVITYTILIQATMLEGQT-------------DKAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 151 ~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~-------------~~a~~~~~~~~~~~~~~~~~ 212 (534)
+--.|.+++|.-...+-+ +.|- ......+..|...|...|+- +++.+.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~-----------~ 173 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE-----------N 173 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH-----------H
Confidence 566777777765544322 2221 11234566677777766541 12222222 2
Q ss_pred HHHHHHHH----HHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CChhhHHHHHHHHHhCCChhH
Q 047017 213 AFQFVRSL----ESRGCQ-PDVISYNMLLRTLLNMGKWEEGEKLMTEMI----SRGLE-PNVVTYSILISSLCRDGKTED 282 (534)
Q Consensus 213 a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~ 282 (534)
|.++|..- ...|-. .--..|..|.+.|.-.|+++.|+...+.-+ +.|-. .....+..+..++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 22222211 111100 122457777888888999999987655432 22322 123467888999999999999
Q ss_pred HHHHHHHHHH----CC-CCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhCCCHHH
Q 047017 283 AVDVLRAAKE----KG-LTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD-----GCLPDIVNYNTILAAFCKNGNADQ 352 (534)
Q Consensus 283 a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ 352 (534)
|.+.|+.... .| -.........+...|.-..++++|+..+.+-+.. +..-....+-++..+|...|..+.
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 9999987543 22 1234456677888888888999999888765432 111234567778889999999999
Q ss_pred HHHHHHHHhh
Q 047017 353 ALEIFEKLSD 362 (534)
Q Consensus 353 A~~~~~~~~~ 362 (534)
|+...+...+
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 9887766543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00076 Score=62.07 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=99.5
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 047017 67 GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVT 143 (534)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 143 (534)
+.+.+......++..+....+.+.+..++-+..... ..-+.+..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 335566666777777777777888888888877654 23345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 047017 144 YNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE 189 (534)
Q Consensus 144 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (534)
++.|+..+.+.|++..|.++...|...+...+..|+..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998877666777766666555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.045 Score=51.68 Aligned_cols=407 Identities=11% Similarity=0.017 Sum_probs=236.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+-..|..++..--...+.+.+...+..++.. .|.-...|......-.+.|..+.+.++|++....-|.+...|......
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344566666555555667777777777754 244556677777777888999999999999988778888888776665
Q ss_pred HHh-cCCHHHHHHHHHHHHhC-CCC-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---hc
Q 047017 116 FCK-ANQIELANKVLDRLRSR-GFS-PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATM---LE 189 (534)
Q Consensus 116 ~~~-~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 189 (534)
+.. .|+.+.....|+.+... |.. .....|...+..-...+++.....+|+++++.. ...++....-|. ..
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhc
Confidence 544 47888888888888765 322 245667888888888899999999999988642 112222222221 11
Q ss_pred ------CCHhHHHHHHHHhc----ccccCChHHHHHHHHHHHHcCCCCCHh--hHHHHH-------HHHHhcCCHHHHHH
Q 047017 190 ------GQTDKAMKLLDEMG----MCKKGMVGQAFQFVRSLESRGCQPDVI--SYNMLL-------RTLLNMGKWEEGEK 250 (534)
Q Consensus 190 ------g~~~~a~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~-------~~~~~~~~~~~a~~ 250 (534)
-..+++.++-.... ....+...+-.+. .+...+.+.+.. ..+.+. .++.......+...
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~--~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI--GVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH--HHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 12233322222211 0001111111110 011111111111 111111 12222333344444
Q ss_pred HHHHHHHCC---CC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHH
Q 047017 251 LMTEMISRG---LE----PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLD 323 (534)
Q Consensus 251 ~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (534)
.++.-+... ++ ++..+|...+..-...|+++.+.-+++...-- +..-...|-..+.-....|+.+.|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 444444431 22 23556777888888899999999998886542 11122344444555555699998888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH---HHHHHHHCCC
Q 047017 324 YMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALG---MISEMLSKGI 400 (534)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~ 400 (534)
...+...+..+.+...-....-..|++..|..+++.+...- |.-...-..-+....+.|+.+.+.. ++......
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-- 432 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-- 432 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--
Confidence 77766444344333333334455789999999999998863 4333444444556677788777773 33333221
Q ss_pred CCCHHHHHHHH----H-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047017 401 EPDEITYNSLI----S-CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR 454 (534)
Q Consensus 401 ~~~~~~~~~l~----~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 454 (534)
.-+..+...+. + .+.-.++.+.|..++.++.+. .+++...|..++..+...+.
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 11222222221 1 133467889999999999876 56677788888887766653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.018 Score=51.68 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
..+.-+...|+...|.++-.++. .|+...|...+.+++..++|++-..+... . -++.-|..++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCC
Confidence 33444445555555555544442 34555555555555555555544433221 1 12244555555555555
Q ss_pred CHHHHHHHHHH
Q 047017 489 WRAEAMELANA 499 (534)
Q Consensus 489 ~~~~A~~~~~~ 499 (534)
+..+|..+..+
T Consensus 252 ~~~eA~~yI~k 262 (319)
T PF04840_consen 252 NKKEASKYIPK 262 (319)
T ss_pred CHHHHHHHHHh
Confidence 55555555554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.051 Score=52.11 Aligned_cols=214 Identities=12% Similarity=0.074 Sum_probs=115.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH----------HHHHHH
Q 047017 48 FRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA----------LISGFC 117 (534)
Q Consensus 48 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------l~~~~~ 117 (534)
+..=..++|.+..+. .|.+..|..+.......-.++.|...|-+..... ....... -++.-.
T Consensus 674 ve~vgledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~--Gik~vkrl~~i~s~~~q~aei~~ 745 (1189)
T KOG2041|consen 674 VEAVGLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA--GIKLVKRLRTIHSKEQQRAEISA 745 (1189)
T ss_pred HHHhchHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc--chhHHHHhhhhhhHHHHhHhHhh
Confidence 333345566665432 6788899988887777777777777776554322 1111111 112223
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHhHHH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 196 (534)
--|.+++|.++|-.+-+++ ..+..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.
T Consensus 746 ~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899988887776552 3456667778877777666532110 00112356777888887778888888
Q ss_pred HHHHHhcccccCChHHHH---HHHHHHH--HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047017 197 KLLDEMGMCKKGMVGQAF---QFVRSLE--SRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILI 271 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~~a~---~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 271 (534)
+.|..-.. ..+.-+++ +.|..+. ....+.+....-.+..++.+.|.-++|.+.+-+. + .| ...+
T Consensus 817 ~yY~~~~~--~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv 885 (1189)
T KOG2041|consen 817 KYYSYCGD--TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAV 885 (1189)
T ss_pred HHHHhccc--hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHH
Confidence 87765410 00000111 1111111 1123335555666666777777777766655322 1 11 1233
Q ss_pred HHHHhCCChhHHHHHHHH
Q 047017 272 SSLCRDGKTEDAVDVLRA 289 (534)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~ 289 (534)
..|...++|.+|.++-+.
T Consensus 886 ~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445566666666655443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00086 Score=52.05 Aligned_cols=127 Identities=12% Similarity=-0.012 Sum_probs=94.7
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKP-DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
.+...+...+...+..|-.-+.+ .|+++ +.+.......-+...|++++|..+|..+...++.+...|..|.
T Consensus 7 ~~~~~~~~~i~~al~~G~tlk~l--------~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLa 78 (165)
T PRK15331 7 VSEERVAEMIWDAVSEGATLKDV--------HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLA 78 (165)
T ss_pred hhHHHHHHHHHHHHHCCCCHHHH--------hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34445555555555555322211 12222 2334455566677899999999999999998889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
.++-..+++++|...|......+. -|.........++...|+.+.|...|+.....
T Consensus 79 a~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 79 AVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999998876653 46667777889999999999999999998874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0049 Score=47.96 Aligned_cols=89 Identities=10% Similarity=0.001 Sum_probs=48.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL 124 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 124 (534)
..+...|++++|..+|+-+.-.+ +.+..-|..|+.++-..+++++|+..|......++.|+..+.....++...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445555555555555554443 33445555555555555555555555555555544444445555555555555555
Q ss_pred HHHHHHHHHh
Q 047017 125 ANKVLDRLRS 134 (534)
Q Consensus 125 a~~~~~~~~~ 134 (534)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 5555555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.046 Score=48.66 Aligned_cols=280 Identities=15% Similarity=0.137 Sum_probs=147.1
Q ss_pred hHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 39 QFMKLIKRSF--RAGKFDESLYFIESMVANGCKPDVVMCTKLIK--KFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 39 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.|..|-..++ -.|+-..|.++-.+..+. +..|.+....++. +-.-.|+++.|.+-|+.|.........-+..|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 4444444444 345666666665554321 1233344443433 2344566666666666666532111122233333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHhh--HHHHHHHH---Hh
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN-CKPTVIT--YTILIQAT---ML 188 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~ 188 (534)
...+.|+.+.|.++-+..-..- +.-...+...+...+..|+++.|+++.+.-.... +.++..- -..|+.+- .-
T Consensus 163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 3345566666666666555441 1124555666666666666666666666544321 1222211 11111110 01
Q ss_pred cCCHhHHHHHHHHh----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 189 EGQTDKAMKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 189 ~g~~~~a~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
..+...|...-... .+...|+..++-.+++.+-+....|+. + .+..+.+.|+. ++.-+
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRl 315 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHH
Confidence 11222222222111 445566666666666666776555543 2 22334555653 33333
Q ss_pred HHHHHC-CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 047017 253 TEMISR-GLEP-NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK-DGRLDLAIEFLDYMISD 328 (534)
Q Consensus 253 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 328 (534)
++.... ..+| +......+..+-...|++..|..--+..... .|....|..+...-.. .||-.++..++.+.++.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 333221 1233 5667777888888999999888877777664 5677777777766544 59999999999988875
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00021 Score=42.49 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
.++..+...|...|++++|+++|+++++..|.++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999988875
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0014 Score=46.90 Aligned_cols=79 Identities=22% Similarity=0.411 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHcCC--------CHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGF-SPDVVTYNIMIGSLCSRG--------MIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
...+..+...+++...-.+|+.+++.|+ -|++.+|+.++...++.. +.-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4445566667999999999999999999 889999999988776543 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 047017 181 ILIQATML 188 (534)
Q Consensus 181 ~l~~~~~~ 188 (534)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00067 Score=45.96 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=36.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDV 106 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 106 (534)
..+.+.+++++|+++++.++..+ |.+...+...+.++...|++++|...|+.+.+..|.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34556666666666666666654 44555566666666666666666666666665554333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.091 Score=50.52 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=65.2
Q ss_pred CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH----------HHHHHcCCC
Q 047017 87 KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIM----------IGSLCSRGM 156 (534)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~ 156 (534)
..++|.+..+. .|.+..|..++......-.++.|...|-+...- +.+....-| ...-.--|+
T Consensus 678 gledA~qfiEd-----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 678 GLEDAIQFIED-----NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred chHHHHHHHhc-----CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence 35666666554 778899999999988888888888888776543 222111111 112233589
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 157 IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+++|.++|-.+.+.. ..+..+.+.||+-...++++.
T Consensus 750 feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~ 785 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN 785 (1189)
T ss_pred hhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc
Confidence 999999998886543 245566677777777777764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0024 Score=45.65 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=47.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047017 411 ISCLCRDGMVDEAVGLLVDMESTRF-RPTVISYNIIILGFCKTR--------RINESIEVLAAMFEKGCKPNETTYVLLI 481 (534)
Q Consensus 411 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 481 (534)
+..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-..+.+++.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666665554422 2344567778888878888888888777
Q ss_pred HHHHc
Q 047017 482 EGIGY 486 (534)
Q Consensus 482 ~~~~~ 486 (534)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 76654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.032 Score=46.73 Aligned_cols=134 Identities=11% Similarity=0.036 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-----HHHH
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISY-----NIII 446 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~ 446 (534)
.+.++..+.-.+.+.-.+.++.+.++...+.++.....+++.-.+.|+.+.|..+|++..+..-..+...+ ....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34445555555556666666666665544445555566666666666666666666655433222222222 2222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..+.-++++..|...+.+....+.. +....+.-+-++.-.|+..+|.+..+.+.+..|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3344455566666666555554322 3333333344444556666666666666665553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0058 Score=51.74 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGC--KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALI 113 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~ 113 (534)
.|...+ .+...|++..|.+.|...++..+ .....++..|+.++...|++++|..+|..+.+.. +.-+.++..+.
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444 46777889999999999888642 2346678889999999999999999999988876 45567888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVV 142 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 142 (534)
.+..+.|+.++|...|+++.+. .|+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 9999999999999999999887 55543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0052 Score=48.49 Aligned_cols=125 Identities=23% Similarity=0.311 Sum_probs=64.1
Q ss_pred hhHHHHHH---HHHhcCChhHHHHHHHHHHHC--CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 38 TQFMKLIK---RSFRAGKFDESLYFIESMVAN--GC-KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 38 ~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
..|..+++ .....|+.+.+...++++... |. -++... ..-.......++... ..+...
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~------~~~~~~ 67 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY------LDALER 67 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH------HHHHHH
Confidence 44555543 345678999999999988763 21 111111 000111111121111 124455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHhhH
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLR-----DNCKPTVITY 179 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 179 (534)
++..+...|+++.|.++++.+.... +-+...|..+|.+|...|+...|.+.|+.+.+ .|++|+..+-
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 5666666777777777777766652 33566667777777777777777777766542 3666666543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.04 Score=52.31 Aligned_cols=232 Identities=14% Similarity=0.110 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHH
Q 047017 141 VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220 (534)
Q Consensus 141 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 220 (534)
...+.+-+..|...|.+++|.++-- .| ....-|..|+.-....=+++-|.+.|.+. +.-.+-+-..-++++
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iac----lg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rV---Rdl~~L~li~EL~~~ 626 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIAC----LG--VTDTDWRELAMEALEALDFETARKAYIRV---RDLRYLELISELEER 626 (1081)
T ss_pred cccccccchhhhhccchhhhhcccc----cc--eecchHHHHHHHHHhhhhhHHHHHHHHHH---hccHHHHHHHHHHHH
Confidence 3444555566777787777765422 12 12234556666656666777777777664 222233444455666
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-----HHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047017 221 ESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYS-----ILISSLCRDGKTEDAVDVLRAAKEKGL 295 (534)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (534)
.+.|-.|+... +...+.-.|++.+|-++|.+--..+ .-...|+ ..++-+...|+.++-..+.++-.+..
T Consensus 627 k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA- 700 (1081)
T KOG1538|consen 627 KKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA- 700 (1081)
T ss_pred HhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh-
Confidence 77776666543 3344556778888887776432110 0011111 12333445555554444444322211
Q ss_pred CCCHhcHHHHHHHHHhcCCHHHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC
Q 047017 296 TPDAYSYDPLISAYCKDGRLDLAIEFLD------YMISDGC---LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCP 366 (534)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 366 (534)
-+..--......+...|+.++|..+.- -+.+.+. ..+..+...+...+.+...+.-|-++|.++-..
T Consensus 701 -r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--- 776 (1081)
T KOG1538|consen 701 -RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--- 776 (1081)
T ss_pred -hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---
Confidence 011111233445556677666665431 1111111 123455555666666667777777787776442
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 367 PNVSSYNTMFSALWSSGDKIRALGMISEMLS 397 (534)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 397 (534)
..++..+...++|.+|..+-+...+
T Consensus 777 ------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 ------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ------HHHhhheeecccchHhHhhhhhCcc
Confidence 3566677788888888887776554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0002 Score=38.75 Aligned_cols=29 Identities=38% Similarity=0.732 Sum_probs=17.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 143 TYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 143 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.05 Score=45.66 Aligned_cols=131 Identities=12% Similarity=0.050 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh-----hHHHHH
Q 047017 302 YDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVS-----SYNTMF 376 (534)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~ 376 (534)
.+.++..+...+.+.-....+.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..+.. ......
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 334444555555555555555555555444455555556666666666666666665443322122222 222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
..|.-.+++..|...+.++...+ +.++...|.-.-+..-.|+...|.+.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444555666666665555432 223333333333344456666666666666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.094 Score=47.80 Aligned_cols=427 Identities=15% Similarity=0.153 Sum_probs=236.5
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCChhhH------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH--HHH
Q 047017 81 KFFQERKSNKAVRVMEILEKYGEPDVFAY------NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG--SLC 152 (534)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 152 (534)
.+-+++++.+|.++|.++.+....++..+ +.++.+|. .++.+.....+....+. .| ...|..+.. .+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 35678999999999999987764443333 35566664 45666666666666655 33 333444443 345
Q ss_pred cCCCHHHHHHHHHHHHhC--CCCC------------CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHH
Q 047017 153 SRGMIESAFKVFDQLLRD--NCKP------------TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVR 218 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~ 218 (534)
+.+.+.+|.+.+...... +..+ +...=+..+..+...|++.++..+++++ +.
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i--------------~~ 156 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI--------------IE 156 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH--------------HH
Confidence 788999999988877654 2111 1112244567778889999999998887 34
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCChhhHHHHHHHHHhC
Q 047017 219 SLESRGCQPDVISYNMLLRTLLNMGK---------------WEEGEKLMTEMISR------GLEPNVVTYSILISSLCRD 277 (534)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ 277 (534)
.+.+....-+..+|+.++-.+.+.-- ++.+.-..+++... .+.|.......++....-.
T Consensus 157 ~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~ 236 (549)
T PF07079_consen 157 RLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV 236 (549)
T ss_pred HHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence 44444455677777775544433211 12222222333221 1223333333333332221
Q ss_pred --CChhHHHHHHHHHHHCCCCCCHh-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhCCCH
Q 047017 278 --GKTEDAVDVLRAAKEKGLTPDAY-SYDPLISAYCKDGRLDLAIEFLDYMISDGCL----PDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 278 --~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 350 (534)
....--.++++.....-+.|+.. ....+...+.. +.+++..+-+.+....+. .=..++..++....+.++.
T Consensus 237 p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T 314 (549)
T PF07079_consen 237 PKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT 314 (549)
T ss_pred CHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11222233333333333344432 22333333333 455555555444432111 1235677788888899999
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHH-------HHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHh
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTM-------FSALW----SSGDKIRALGMISEMLSKGIEPDEITYNSLIS---CLCR 416 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~ 416 (534)
..|.+.+.-+.-. .|+...-..+ ....+ ..-+...-+.+|......++. .......++. -+.+
T Consensus 315 ~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 315 EEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHh
Confidence 9999988877654 3333221111 11111 111233445566666654332 1222233333 2445
Q ss_pred cCC-HHHHHHHHHHHHhCCCCCChhhHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCC----HHHHHHHHH--
Q 047017 417 DGM-VDEAVGLLVDMESTRFRPTVISYNIII----LGFCK---TRRINESIEVLAAMFEKGCKPN----ETTYVLLIE-- 482 (534)
Q Consensus 417 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~-- 482 (534)
.|. -++|.++++.+.+-. .-|...-+.+. .+|.+ ...+.+-+.+-+-+.+.|++|- ...-+.|.+
T Consensus 392 ~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred cCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 555 788999999887641 22333333221 22222 2223333444334445677763 333344433
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
-+...|++.++.-+-.-+.+..| ++.++..+|-++.-.++|+||-+.+.
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35578999999998888888999 99999999999999999999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00026 Score=38.27 Aligned_cols=28 Identities=39% Similarity=0.807 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
+|+.++.+|++.|++++|.+++++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.011 Score=50.22 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHH
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFR--PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK-P-NETTYVLL 480 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l 480 (534)
..|+.-+.. ...|++..|...|...++..+. -....+-+|..++...|++++|..+|..+.+.-+. | -+..+..|
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 356665554 4678899999999999876321 12445667899999999999999999999885322 1 35788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchHHHHH
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAISRDTFKR 513 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 513 (534)
..+..+.|+.++|...|+++++..|..+.+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999988865543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0052 Score=54.89 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.++..+..+|.+.+++..|+....+.+..+. +|...+-.=.++|...|+++.|+..|+++++..|.+..+...|.++-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455666777777788888877777777653 356666666777777788888888888888888877777777777766
Q ss_pred hHHHHHHh
Q 047017 520 LLDVYKEI 527 (534)
Q Consensus 520 ~~~~~~~~ 527 (534)
+...+.+-
T Consensus 337 k~~~~~~k 344 (397)
T KOG0543|consen 337 KIREYEEK 344 (397)
T ss_pred HHHHHHHH
Confidence 65555443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.1 Score=46.55 Aligned_cols=262 Identities=18% Similarity=0.186 Sum_probs=171.7
Q ss_pred CHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 228 DVISYNMLLRT--LLNMGKWEEGEKLMTEMISRGLEPNVVT--YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 228 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
|......++.+ -.-.|+++.|.+-|+.|... |.... ...|.-.-.+.|+.+.|..+-+..-..- +.-.....
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~ 192 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAAR 192 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHH
Confidence 44444444443 45589999999999999863 22221 2223333457899999999988877653 22456778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHH--HHHHHHH--HH-hCCCHHHHHHHHHHHhhCCCCCCHh-hHHHHH
Q 047017 304 PLISAYCKDGRLDLAIEFLDYMISDGC-LPDIVN--YNTILAA--FC-KNGNADQALEIFEKLSDVGCPPNVS-SYNTMF 376 (534)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~--~~~l~~~--~~-~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 376 (534)
..+...+..|+++.|+++++.-....+ .++..- -..++.+ -. -.-+...|...-.+..+. .|+.. .-....
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AA 270 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHH
Confidence 889999999999999999987765422 223211 1112211 11 123466677666666664 34433 344556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST-RFRP-TVISYNIIILGFCKTRR 454 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 454 (534)
.++.+.|+..++-.+++.+-+.. |.+.+...+ .+.+.|+ .+..-+++.... .++| +......+..+-...|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 78899999999999999998864 444443332 2335554 444444444321 1344 45666677888889999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHc
Q 047017 455 INESIEVLAAMFEKGCKPNETTYVLLIEGIG-YGGWRAEAMELANALVSM 503 (534)
Q Consensus 455 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 503 (534)
+..|..--+..... .|....|..+.+.-. ..|+-.+++.++-+.++.
T Consensus 345 ~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 345 FSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99988877777654 678888888877655 559999999999999874
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.16 Score=48.22 Aligned_cols=161 Identities=13% Similarity=0.032 Sum_probs=105.7
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 56 SLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 56 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
...+++..... ..+...|..++.---.....+.+...+..++..-|.-...|...+..-.+.|..+.+.++|++.+..
T Consensus 31 ~~~~we~~~~~--~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a 108 (577)
T KOG1258|consen 31 SLDYWEILSND--SLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA 108 (577)
T ss_pred hhhHhhccccc--hhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444444332 2344555555543333334466677777777766777778889999999999999999999998764
Q ss_pred CCCCChhhHHHHHHHH-HcCCCHHHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHH
Q 047017 136 GFSPDVVTYNIMIGSL-CSRGMIESAFKVFDQLLRD-NC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 136 ~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 212 (534)
++.....|......+ ...|+.+.....|+.+... |. -.....|...+..-..++++.....+++++.......+..
T Consensus 109 -ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 109 -IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred -hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 455677777665544 3568888888999988764 32 2234567777777777888888888888773333333333
Q ss_pred HHHHHHH
Q 047017 213 AFQFVRS 219 (534)
Q Consensus 213 a~~~~~~ 219 (534)
-+.-|.+
T Consensus 188 ~f~~f~~ 194 (577)
T KOG1258|consen 188 HFDRFKQ 194 (577)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.12 Score=46.89 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=45.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 047017 301 SYDPLISAYCKDGRLDLAIEFLDYMISDG---CLPDIVNYNTILAAFCK---NGNADQALEIFEKLSDVGCPPNVSSYNT 374 (534)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 374 (534)
+...++-+|....+++..+++.+.+.... +......-...+-++.+ .|+.++|+.++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556777777777777777766541 11122233334445555 6777777777777444444667777766
Q ss_pred HHHHH
Q 047017 375 MFSAL 379 (534)
Q Consensus 375 l~~~~ 379 (534)
++..|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.013 Score=44.63 Aligned_cols=84 Identities=10% Similarity=0.202 Sum_probs=62.5
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh-hHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGC--KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF-AYN 110 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 110 (534)
+.++..+..-....++.|++.+|.+.|+.+..+-+ +....+...++.++.+.+++++|...++...+.+|.++. -|.
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 45667777788888999999999999999887531 334556778888999999999999999999998854443 243
Q ss_pred HHHHHHH
Q 047017 111 ALISGFC 117 (534)
Q Consensus 111 ~l~~~~~ 117 (534)
..+.+++
T Consensus 87 ~Y~~gL~ 93 (142)
T PF13512_consen 87 YYMRGLS 93 (142)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0061 Score=55.82 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=53.8
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDV---VMCTKLIKKFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 101 (534)
-+...+..+...|...|++++|+..|+++++.+ +.+. .+|..+..+|...|+.++|+..++.+.+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 366778888889999999999999999988875 3333 34888899999999999999999888875
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.13 Score=46.77 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=60.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHhh
Q 047017 105 DVFAYNALISGFCKANQIELANKVLDRLRSRG---FSPDVVTYNIMIGSLCS---RGMIESAFKVFDQLLRDNCKPTVIT 178 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 178 (534)
++.+...++-+|....+++..+++.+.+.... +......-...+-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 45556677778999999999999999988651 11122223344555666 8999999999999666555888889
Q ss_pred HHHHHHHHH
Q 047017 179 YTILIQATM 187 (534)
Q Consensus 179 ~~~l~~~~~ 187 (534)
+..+++.|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 988888774
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0049 Score=50.17 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC----------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR----------------GMIESAFKVFDQLLRDNCKPTVITYTILI 183 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 183 (534)
|..+-....+..|.+.|+..|..+|+.|+.++=+. .+-+-|++++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45555556666677777777777777777665431 23467899999999999999999999999
Q ss_pred HHHHhcC
Q 047017 184 QATMLEG 190 (534)
Q Consensus 184 ~~~~~~g 190 (534)
+.+.+.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 9885544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.078 Score=45.59 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=65.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE 158 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 158 (534)
.......|++.+|..+|.......+.+..+-..++++|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 33456677777777777777777776777777777777778888777777777654311111111111222333333333
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 159 SAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+...+-.++-.. |.|...-..+...+...|+.+.|.+.+-.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333332222221 33445555555555555555555554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.016 Score=44.06 Aligned_cols=20 Identities=20% Similarity=0.001 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCCchH
Q 047017 490 RAEAMELANALVSMHAISRD 509 (534)
Q Consensus 490 ~~~A~~~~~~~~~~~~~~~~ 509 (534)
..+|...|+++++..|.++-
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 55788888888888887763
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.019 Score=46.90 Aligned_cols=121 Identities=15% Similarity=0.194 Sum_probs=70.9
Q ss_pred CCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 366 PPNVSSYNTMFSALWSS-----GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 440 (534)
..+..+|..++..+... |..+=....+..|.+-|+.-|..+|+.|++++-+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 44667777777776543 4555555666677777777777777777777654 3221 1111111110
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHHcCC
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWR----AEAMELANALVSMHA 505 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~ 505 (534)
- --.+-+-|++++++|...|+-||.+++..+++.+.+.+.. ..-.-++-+....+|
T Consensus 114 -------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP 173 (228)
T PF06239_consen 114 -------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINP 173 (228)
T ss_pred -------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCC
Confidence 0 0123355778888888888888888888888887776632 223334445555444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.29 Score=47.74 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
+.+.-+.-+...|+..+|.++-.++. -||...|..-+.+++..+++++-.++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44455556667788888887776664 5677777777788888888877666555442 1345666777888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 486 YGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 486 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
+.|+.+||.+++-+..... .....|...|.+.+|.++.
T Consensus 756 ~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 8888888888876653221 3466677778888877764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.061 Score=44.62 Aligned_cols=22 Identities=14% Similarity=-0.037 Sum_probs=10.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q 047017 269 ILISSLCRDGKTEDAVDVLRAA 290 (534)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~ 290 (534)
..+-.+.-..|+..|...++.-
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcch
Confidence 3333444445555555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.33 Score=48.04 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
.++..+....+.+.+..+.+..-+. ++..|..++..+++.+..+.-.+...+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3455566667777777666555432 66777778888877776555544444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.016 Score=53.23 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=60.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF---AYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+.+...++.++.+|...|++++|+..|+...+.+|.+.. +|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999999999999877774 5999999999999999999999999875
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=44.71 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEK----GCK-PN-ETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
.+++.+...|...|++++|+..++++++. |.. |+ ..++..++.++...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666666666666666666542 111 11 34556666777777777777777777665
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.22 Score=44.88 Aligned_cols=23 Identities=9% Similarity=0.423 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIE 61 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~ 61 (534)
.|..+.......|+..-|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 46778888889999988888764
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.16 Score=42.94 Aligned_cols=64 Identities=19% Similarity=0.065 Sum_probs=45.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCKP---NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
.+.+.|.+.|.+-.|..-++.|++. .+- ....+..+..+|...|-.++|.+.-+-+-.-.|.++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3556788888888898888888885 222 234555667788888888888877665555555554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00038 Score=38.35 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=29.2
Q ss_pred HHHHHHcCCCchHHHHHHHhhcchHHHHHHhhh
Q 047017 497 ANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529 (534)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 529 (534)
|+++++.+|.++.++..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999998863
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.093 Score=43.59 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..|.....+|...++|++|...+.++.+. ...+...| ...++ ++.|..+.+++.+. +.-...+......|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAAKa------yEqaamLake~~kl-sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAAKA------YEQAAMLAKELSKL-SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHHHH------HHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 34555556666666666666666655431 11122211 12222 33444444444432 222334455555666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---C--CCCCHhhHHHHHHHHHhcCCH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD---N--CKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~ 192 (534)
..|.++.|-..+++.-+. ...-++++|+++|++.... + ...-...+....+.+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666666655554432 2334455555555554321 1 011112333444455555555
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHH
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV-ISYNMLLRTLLNMGKWEEGEKLMTEMISRG---LEPNVVTYS 268 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 268 (534)
++|-..+.+- ..+...... -++. ..|...+-.+.-..++..|...++.--+.+ -.-+..+..
T Consensus 167 ~Eaa~a~lKe-----------~~~~~~~~~---y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 167 TEAATAFLKE-----------GVAADKCDA---YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred hHHHHHHHHh-----------hhHHHHHhh---cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 5554444332 001111111 1122 335555666777789999999998854432 122456777
Q ss_pred HHHHHHHhCCChhHHHHHHH
Q 047017 269 ILISSLCRDGKTEDAVDVLR 288 (534)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~ 288 (534)
.|+.+| ..||.+++..++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 888876 6788888777663
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.013 Score=52.45 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=85.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC-----CCC---------CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH
Q 047017 44 IKRSFRAGKFDESLYFIESMVAN-----GCK---------PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY 109 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (534)
...+++.|+|..|...|++++.. +.+ .-...+..+..++.+.+++..|++..+..+..++.|..++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34688999999999999997642 111 1122456677778888888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHcCCCH-HHHHHHHHHHHh
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVT-YNIMIGSLCSRGMI-ESAFKVFDQLLR 169 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~-~~a~~~~~~~~~ 169 (534)
..-..++...|+++.|...|+++.+. .|+... -+.++.+-.+.... +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888888888888876 554433 33444443333333 333566666653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.093 Score=45.14 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=102.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-ChhhHHHHHHHHHhcCCHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP-DVFAYNALISGFCKANQIE 123 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 123 (534)
......|++.+|...|..+.+.. +.+..+...++.++...|+.+.|..++..+...... .......-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 35678899999999999999876 556788889999999999999999999998765422 2222233445555555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCC
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC-KPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 191 (534)
+..++-.++... +-|...-..+...+...|+.+.|.+.+-.+++.+. -.+...-..++..+...|.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 555555555443 33777777889999999999999988877776521 3344556666666655553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.36 Score=44.84 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=72.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhH
Q 047017 368 NVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEP---DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISY 442 (534)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~ 442 (534)
...++..++..+.+.|.++.|...+..+...+... .+......+......|+..+|...++...+.....+ ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34456666666666677766666666665532111 223333344445556666666666666655211111 0000
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc------CCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG------GWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
..+...... ..+..... .........-..++..+..-+... +..+++...|+.+.+..|....++..++.
T Consensus 225 ~~~~~~~~~--~~~~~~~~--~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISST--NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHHhhcccc--cccccccc--chhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 011000000 00000000 000000000012233333333344 78889999999999999988888888887
Q ss_pred hcchH
Q 047017 517 TFPLL 521 (534)
Q Consensus 517 ~~~~~ 521 (534)
.+...
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 77653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.075 Score=50.98 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=113.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh------hHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCC
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVV------MCTKLIKKFFQ----ERKSNKAVRVMEILEKYGEPD 105 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 105 (534)
=|..+..++....-.||-+.+++++.+..+.+.-..+. .|+.++..+.. ....+.|.++++.+.++.|.+
T Consensus 187 LPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s 266 (468)
T PF10300_consen 187 LPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS 266 (468)
T ss_pred CCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc
Confidence 45556677777778899999999999987643111222 23333333332 456788999999999988877
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 106 VFAYNALISGFCKANQIELANKVLDRLRSRG--F-SPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 106 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
......-.+.+...|++++|++.|+...... . +.....+-.++.++.-.++|++|...|..+.+.+ .-+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 7777777888889999999999999765321 0 1133445567778888999999999999999864 3333344333
Q ss_pred -HHHHHhcCCH-------hHHHHHHHHh
Q 047017 183 -IQATMLEGQT-------DKAMKLLDEM 202 (534)
Q Consensus 183 -~~~~~~~g~~-------~~a~~~~~~~ 202 (534)
+.++...|+. ++|.++|.++
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 3345566777 6666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.086 Score=48.72 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHh---hCCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047017 350 ADQALEIFEKLS---DVGCPPNVSSYNTMFSALWSS---------GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRD 417 (534)
Q Consensus 350 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 417 (534)
.+.|..+|.++. ... |.....|..+..++... .+..+|.++.+...+.+ +.|......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 345666677766 322 22344555444443221 12345555566666553 34555555666655666
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 047017 418 GMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIGYGGWRAEAME 495 (534)
Q Consensus 418 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 495 (534)
++++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++.++..+.-- ..+....+..|+.. ..++|++
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 6677777777777664 333 44555555556667777777777777666532211 12222233344444 3566666
Q ss_pred HHHHH
Q 047017 496 LANAL 500 (534)
Q Consensus 496 ~~~~~ 500 (534)
+|-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 55443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.3 Score=42.22 Aligned_cols=228 Identities=20% Similarity=0.076 Sum_probs=162.2
Q ss_pred CCChhHHHHHHHHHHHCCCCC-CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHH
Q 047017 277 DGKTEDAVDVLRAAKEKGLTP-DAYSYDPLISAYCKDGRLDLAIEFLDYMISD-GCLPDIVNYNTILAAFCKNGNADQAL 354 (534)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 354 (534)
.+....+...+.......... ...........+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666667776666653221 2456677788888899999999988887752 23445667777888888888999999
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 355 EIFEKLSDVGCPPNVSSYNTMFS-ALWSSGDKIRALGMISEMLSKGI--EPDEITYNSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
..+......... +......... .+...++++.+...+.+...... ......+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPD-PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 999988875422 2233333333 78899999999999999866321 1233444444455677889999999999988
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 432 STRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..........+..+...+...++++.|...+......... ....+..+...+...|..+++...+.+.....+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7522213667778888888999999999999999886322 2445555555555777899999999999998876
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0046 Score=36.64 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
+..+...+...|++++|+++|+.+.+..|.+..++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3444444444444444444444444444444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.067 Score=39.51 Aligned_cols=95 Identities=17% Similarity=0.056 Sum_probs=69.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHH---HHHHHHHHHccC
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK-GCKPNETT---YVLLIEGIGYGG 488 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~---~~~l~~~~~~~g 488 (534)
+....|+.+.|++.|.+.+.. .+.....||.-..++.-+|+.++|++=++++++. |.+ .... |..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456788899999999888775 2346778888888888889999999888888874 323 3322 223334566788
Q ss_pred CHHHHHHHHHHHHHcCCCchH
Q 047017 489 WRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 489 ~~~~A~~~~~~~~~~~~~~~~ 509 (534)
+.+.|+.-|+.+.++|..-..
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHH
Confidence 999999999998888765443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.17 Score=46.91 Aligned_cols=145 Identities=11% Similarity=0.060 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHHH---HCCCCCCHhhHHHHHHHHHh---------cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 52 KFDESLYFIESMV---ANGCKPDVVMCTKLIKKFFQ---------ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 52 ~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
..+.|+.+|+++. ..+ |....+|-.+..++.. .....+|.++.+...+.++.|+.+...+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 4567889999998 432 3335566555544432 23455788889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT-VITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
++++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+.+...- .......+..|+. ...+++++
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 9999999999999987 454 56677777777889999999999999877642111 1222223334443 34566666
Q ss_pred HHH
Q 047017 198 LLD 200 (534)
Q Consensus 198 ~~~ 200 (534)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.84 Score=45.37 Aligned_cols=170 Identities=9% Similarity=0.080 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG 155 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 155 (534)
..-+..+.+...++-|..+.+.-......-.......+..+.+.|++++|...|-+-... +.| ..++.-|....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 345556666677777776655432211112234555566667788999888887776533 122 13444555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccc-cCChHHHHHHHHHHHH--------cCCC
Q 047017 156 MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCK-KGMVGQAFQFVRSLES--------RGCQ 226 (534)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~a~~~~~~~~~--------~~~~ 226 (534)
+..+--.+++.+.+.|. .+...-..|+.+|.+.++.++-.+..+...-.. --+.+.|++++++..- ....
T Consensus 412 ~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 66666677777777774 445556778888888888888777766542000 1134555555433110 0011
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEM 255 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 255 (534)
.+...... .+-..+++++|++.++.+
T Consensus 491 ~he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 KHEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred cCHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 11222222 233456777777777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.65 Score=44.61 Aligned_cols=206 Identities=16% Similarity=0.193 Sum_probs=104.7
Q ss_pred HHHHHHcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----HHHHHHHcCCCHHHHHHHHHHHH
Q 047017 95 MEILEKYGE-PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYN-----IMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 95 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
++++.+++. |+.. .++..++-.|.+.+|.++|.+--..+ .-...|+ -+..-+...|..++-..+..+-.
T Consensus 623 L~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 623 LEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred HHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 445555552 4332 34455666777777777776533220 0111111 12344455555555444444322
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047017 169 RDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEG 248 (534)
Q Consensus 169 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 248 (534)
+. ..+..--...+..+...|+.++|..+.-+ .|-.+-++++-+++.. .+..+...+..-+.+...+.-|
T Consensus 698 ~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d-----~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 698 DW--ARNIKEPKAAAEMLISAGEHVKAIEICGD-----HGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HH--hhhcCCcHHHHHHhhcccchhhhhhhhhc-----ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 21 11111112345566677888888776543 2333334444333322 2344555555555666777778
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-----------cHHHHHHHHHhcCCHHH
Q 047017 249 EKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAY-----------SYDPLISAYCKDGRLDL 317 (534)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~ 317 (534)
-++|..|-.. ..++......++|.+|..+-+...+. .|+.. -|...-.+|.+.|+..+
T Consensus 767 aeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 767 AEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred HHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence 8888776432 34566777888888888777665442 22221 12222344555566666
Q ss_pred HHHHHHHHHH
Q 047017 318 AIEFLDYMIS 327 (534)
Q Consensus 318 a~~~~~~~~~ 327 (534)
|..+++++..
T Consensus 836 A~~vLeQLtn 845 (1081)
T KOG1538|consen 836 AVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHhhh
Confidence 6666555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.032 Score=44.02 Aligned_cols=55 Identities=20% Similarity=0.408 Sum_probs=23.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
++..+...|+++.|..+.+.+.... |.+...+..++.+|...|+...|...|+.+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333444444444444444444432 334444444444444444444444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0066 Score=41.66 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 047017 109 YNALISGFCKANQIELANKVLDR 131 (534)
Q Consensus 109 ~~~l~~~~~~~g~~~~a~~~~~~ 131 (534)
+..+..++...|++++|.+.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444444443
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.71 Score=43.13 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
..++....+..+.+.-+++-.++++.+|....+|..|.+- ......++.++|++..+.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHH
Confidence 4556666778888888888888888776666777665543 234567788888877654
|
The molecular function of this protein is uncertain. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.7 Score=42.73 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=81.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ 121 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 121 (534)
.-|......|+.-.|-+-+...+++- +.++.........+...|.++.+...+......-.....+...+++...+.|+
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 34555566777777766665555542 44444444445556677888888887776665545555667777788888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 122 IELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
++.|...-+.|....+. +..............|-++++.-.++++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888888877766443 33333333333345566777877777777655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.4 Score=45.89 Aligned_cols=312 Identities=17% Similarity=0.178 Sum_probs=131.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcC----CCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHH
Q 047017 80 KKFFQERKSNKAVRVMEILEKYG----EPDVFAYNALISGFCKA-NQIELANKVLDRLRSRGFSPDVV--TYNIMIGSLC 152 (534)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 152 (534)
.-++..+++.+|..+.++..-.- ..++..|..-+.++.+. ++.+-...++-.+...++.-+.+ ++.+-...|.
T Consensus 685 r~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~ 764 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYM 764 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccceeEE
Confidence 34455566666655554432211 23445555555555554 44444444444444332111110 0111111222
Q ss_pred cCC----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--CHhHHHHHHHHhcccc-cCChHHHHHHHHHHHHcCC
Q 047017 153 SRG----MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG--QTDKAMKLLDEMGMCK-KGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 153 ~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~ 225 (534)
... ......+......... .|+ .....++..|.+.+ .++.++....+..... ....++|++.+--+..
T Consensus 765 ~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvd--- 839 (1265)
T KOG1920|consen 765 SRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVD--- 839 (1265)
T ss_pred eccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcc---
Confidence 221 2233333333333333 444 44456777777776 6667766666553211 3334444444433221
Q ss_pred CCCHhhHHHHHH----------HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047017 226 QPDVISYNMLLR----------TLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL 295 (534)
Q Consensus 226 ~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (534)
....|+..+. +-..+.|+.+=+-+++++.+. +++..-|. |. ...++++.|+..+..+.
T Consensus 840 --vn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~~---- 907 (1265)
T KOG1920|consen 840 --VNELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSECG---- 907 (1265)
T ss_pred --HHHHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHcC----
Confidence 1222332222 122233444444444433321 11111110 11 11244555555444332
Q ss_pred CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhh
Q 047017 296 TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV----NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSS 371 (534)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 371 (534)
...|....+.-.+.|-++.|+.++. |+.. .|...+..+.....+++|.-.|+..-+
T Consensus 908 ---~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------- 967 (1265)
T KOG1920|consen 908 ---ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--------- 967 (1265)
T ss_pred ---ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------
Confidence 2233334444445555555555442 2332 233334444445555565555554422
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEI--TYNSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
....+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...++.-+|-+++.+..
T Consensus 968 lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 968 LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 123455566666666666666554321 1111 11344445555555555555555443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.07 Score=40.29 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=39.3
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 047017 434 RFRPTVISYNIIILGFCKTRRINESIEVLAAMFE-KGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 485 (534)
...|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..|++=+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3567788888888888888888888888888776 466667788877775433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.077 Score=50.08 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=50.0
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
..++...+. .+..+-.|+++++.++.+.-.-. ..........++..+.+.|..+.|+.+...-. .-
T Consensus 259 ~~ld~~~~~--fk~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~r 324 (443)
T PF04053_consen 259 YELDLSELE--FKTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD-----------HR 324 (443)
T ss_dssp EE--HHHHH--HHHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HH
T ss_pred EEECHHHHH--HHHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HH
Confidence 334444443 45566678888877776521111 01224456677777777787777776543211 11
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
.+...+.|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|.+
T Consensus 325 FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 23333445555544433221 1344455555555555555555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.11 Score=45.23 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=53.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCCHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV----VTYNIMIGSLCSRGMIE 158 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 158 (534)
...|++-+|-..++++++..|.|..++.-.=.++.-.|+...-...++++... -.+|. +.-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34455555555555555544555544444444555555554444444444432 01111 11112222334455555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 159 SAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+|++.-++..+.+ +.|.....++...+-..|++.++.+...+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555555555444 44444444444444445555555444433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.15 Score=41.04 Aligned_cols=109 Identities=18% Similarity=0.124 Sum_probs=71.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPT-----VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 487 (534)
-+...|++++|..-|..++..- ++. ...|..-..++.+.+.++.|++-..++++.++. ....+..-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3456777777777777776641 221 233444455677778888888888887776533 233333445567777
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 488 GWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 488 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
.++++|++-|+++.+..|....+....+++-...+.
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 888888888888888888877777777666655443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.41 Score=42.46 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhCCChhHHH
Q 047017 239 LLNMGKWEEGEKLMTEMISRG--LEPNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
+....+.++|+..+...+.+- ...-..++..+..+..+.|.+++++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 344555666666655554431 0001223444444445555544443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.17 Score=37.46 Aligned_cols=93 Identities=11% Similarity=-0.072 Sum_probs=62.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHcCC
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV---VTYNIMIGSLCSRG 155 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 155 (534)
..++...|+.+.|++.|...+..-|....+|+.-..++.-+|+.++|++-+++..+..-+.+. ..|..-...|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345567777788888877777776777777877777777778888887777777765222222 22333345566677
Q ss_pred CHHHHHHHHHHHHhCC
Q 047017 156 MIESAFKVFDQLLRDN 171 (534)
Q Consensus 156 ~~~~a~~~~~~~~~~~ 171 (534)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777777666
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.41 Score=46.05 Aligned_cols=130 Identities=18% Similarity=0.103 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHH------H----hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047017 267 YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAY------C----KDGRLDLAIEFLDYMISDGCLPDIVN 336 (534)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------~----~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (534)
+..++....-.||-+.+++.+....+.+-.-.+..--.++.-| + ...+.+.|.++++.+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4455555556677777777776655532111111111111111 0 123455566666666654 233333
Q ss_pred H-HHHHHHHHhCCCHHHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 337 Y-NTILAAFCKNGNADQALEIFEKLSDVGC---PPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 337 ~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
| -.-.+.+...|+.++|++.|+....... ......+--++-.+....+|++|...+..+.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3 2334455556666666666665442110 111122333444455556666666666666653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.97 Score=42.27 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFR-PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIG 485 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 485 (534)
..+..++.+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+--+...+.+ ...|+..+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 34455555666666666666666543211 1233445566666666666666666666533221111 222332221111
Q ss_pred ccCC---------------HHHHHHHHHHHHHcCCCchH
Q 047017 486 YGGW---------------RAEAMELANALVSMHAISRD 509 (534)
Q Consensus 486 ~~g~---------------~~~A~~~~~~~~~~~~~~~~ 509 (534)
..|+ ...|.+.+.++++.+|..|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 1111 23466788888888886554
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.66 Score=39.39 Aligned_cols=57 Identities=7% Similarity=0.060 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
.+.+.|.+.|.+-.|..-+++|.+. .+.+ ...+-.+..+|...|-.++|.+.-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4556788889999999989888876 3323 3345566778888888888877654443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.4 Score=43.22 Aligned_cols=338 Identities=16% Similarity=0.104 Sum_probs=164.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH--HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMI--ESAFKVFDQLLRDNCKPTVITYTILIQATM 187 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (534)
..++.-+...+.+..|+++-..+...-.. +...|......+.+..+. +++.+..++=..... .....|..++.-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 34456666778888888887776532111 256666666666665332 233333332222211 33456777777777
Q ss_pred hcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047017 188 LEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY 267 (534)
Q Consensus 188 ~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 267 (534)
..|+.+-|..+++.-. ..... ..++ .+..-+...+.-+...|+.+-...++-.+...- +...+
T Consensus 519 ~~GR~~LA~kLle~E~----~~~~q-V~lL---------L~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l 581 (829)
T KOG2280|consen 519 QEGRFELARKLLELEP----RSGEQ-VPLL---------LKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL 581 (829)
T ss_pred hcCcHHHHHHHHhcCC----Cccch-hHHH---------hccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH
Confidence 8888888888776420 00000 0000 011112222333344444444444443333210 11111
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHH-HHC-CCCCCHHHHHHHHHHHH
Q 047017 268 SILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYM-ISD-GCLPDIVNYNTILAAFC 345 (534)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~~~~l~~~~~ 345 (534)
.....+...|..+|.+..++. +.. .+-..|....+....-.+.-+- ... .+.+-..........+.
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 111223444555555554421 111 1122222222222211111110 000 01111222333344444
Q ss_pred hCCCHH----------HHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 346 KNGNAD----------QALEIFEKLSDV-GCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL 414 (534)
Q Consensus 346 ~~~~~~----------~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 414 (534)
+..... .-+.+.+.+... |..-..-+.+.-+.-+...|+..+|.++-.+.. -||-..|-.-+.++
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTAL 725 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHH
Confidence 433311 112222222211 222233345555666777788888877776654 35777777777788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
+..+++++-+++-+... .+.-|...+.+|.+.|+.++|.+++.+.- +.. ....+|.+.|++.+|.
T Consensus 726 a~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAA 790 (829)
T ss_pred HhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHH
Confidence 88888877666554432 25566777888888888888888887662 111 4667778888888877
Q ss_pred HHH
Q 047017 495 ELA 497 (534)
Q Consensus 495 ~~~ 497 (534)
+.-
T Consensus 791 d~A 793 (829)
T KOG2280|consen 791 DLA 793 (829)
T ss_pred HHH
Confidence 654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.19 Score=43.94 Aligned_cols=137 Identities=12% Similarity=0.037 Sum_probs=71.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD---NCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
..|+..+|...++++++. .+.|...+...=.+|.-+|+...-...++++... ++|-.......+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456666666666666654 2345556665566666677776666666666543 112122222333444556677777
Q ss_pred HHHHHHHh----------------cccccCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 195 AMKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPD---VISYNMLLRTLLNMGKWEEGEKLMTEM 255 (534)
Q Consensus 195 a~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 255 (534)
|.+.-++. .....++..++.+.+.+-...--..+ ..-|-...-.+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 77766655 22334455555554433221110000 111223333455567777777777653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.31 Score=46.13 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=20.8
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
.+.|+++.|.++.++ ..+...|..|.......|+++-|.+.|.+
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555444332 22344555555555555555555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.85 Score=39.30 Aligned_cols=223 Identities=20% Similarity=0.182 Sum_probs=160.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHhcHHHHHHHHHhcCCHHHHH
Q 047017 242 MGKWEEGEKLMTEMISRGLEP-NVVTYSILISSLCRDGKTEDAVDVLRAAKEK-GLTPDAYSYDPLISAYCKDGRLDLAI 319 (534)
Q Consensus 242 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (534)
.+....+...+.......... ...........+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666777777766653221 3567777888888999999999998887752 23345566777777888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHhhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 320 EFLDYMISDGCLPDIVNYNTILA-AFCKNGNADQALEIFEKLSDVGCP---PNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
..+.........+ ......... .+...|+++.|...+.+..... + .....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELD-PELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999988764332 222333333 7889999999999999986632 2 23344444455567788999999999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 396 LSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 396 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
.... +. ....+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.+.....
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8762 33 4677788888888999999999999998875 333 3445555555557778999999999888763
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.47 Score=42.12 Aligned_cols=231 Identities=12% Similarity=0.055 Sum_probs=137.7
Q ss_pred HHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHhHHHHHH----HHHHHcC--CCChhhHHHHHHHHHh
Q 047017 47 SFRAGKFDESLYFIESMVANG--CKPDVVMCTKLIKKFFQERKSNKAVRVM----EILEKYG--EPDVFAYNALISGFCK 118 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~--~~~~~~~~~l~~~~~~ 118 (534)
+....+.++|+..|.+.+.+- .......+..+..+....|.+++++..- ..+.... ..--.+|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889998888876531 0112234455667788888888776532 2222211 1223456667777777
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC---C--CCHhhHHHHHHHHHhc
Q 047017 119 ANQIELANKVLDRLRSR-GFSPD---VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC---K--PTVITYTILIQATMLE 189 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~ 189 (534)
.-++.+++.+-..-... |..|. -.....+..++...+.++++++.|+...+... . ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 77777777766655443 22221 22334566777888889999999999876421 1 1234688899999999
Q ss_pred CCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC
Q 047017 190 GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP-----DVISYNMLLRTLLNMGKWEEGEKLMTEMIS----RGL 260 (534)
Q Consensus 190 g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~ 260 (534)
.|+++|.-...+. ..+. ...++.. .......|..++...|...+|.+.-++..+ .|-
T Consensus 176 ~D~~Kal~f~~kA-----------~~lv---~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 176 KDYEKALFFPCKA-----------AELV---NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred HhhhHHhhhhHhH-----------HHHH---HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 9999988776654 2222 2222111 111233344556667777777766665543 332
Q ss_pred CC-ChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047017 261 EP-NVVTYSILISSLCRDGKTEDAVDVLRAAK 291 (534)
Q Consensus 261 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (534)
.+ -......+...|...|+.+.|..-|+++.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 21 12334566777888888888877776654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.9 Score=42.75 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHCC
Q 047017 384 DKIRALGMISEMLSKG 399 (534)
Q Consensus 384 ~~~~a~~~~~~~~~~~ 399 (534)
+...|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 4455555555555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.1 Score=39.83 Aligned_cols=164 Identities=13% Similarity=0.082 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhCCCHH---HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 335 VNYNTILAAFCKNGNAD---QALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
.++..++.+|...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|... +.-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 35666777777766654 445555555443 2444556656667777778888888888888875 221223333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCChh-hHHH-HHH---HHHhcCC------hHHHHHHHHHHHH-cCCCCCHHH
Q 047017 412 SCL---CRDGMVDEAVGLLVDMESTRFRPTVI-SYNI-IIL---GFCKTRR------INESIEVLAAMFE-KGCKPNETT 476 (534)
Q Consensus 412 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-l~~---~~~~~g~------~~~A~~~~~~~~~-~~~~~~~~~ 476 (534)
..+ .. .....+...+..+....+.|... .... ++. .....++ .+...+++....+ .+.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 33 33455666665555443444432 1111 111 1112211 3333344443322 122223333
Q ss_pred H---HHH----HHHHHccCCHHHHHHHHHHHH
Q 047017 477 Y---VLL----IEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 477 ~---~~l----~~~~~~~g~~~~A~~~~~~~~ 501 (534)
- ..+ +..+.+.+++++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 223 334567889999999998654
|
It is also involved in sporulation []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.055 Score=43.36 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=69.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPN----ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.-+...|++++|..-|..++..-+... ...|..-..++.+.+.++.|+.-..++++++|....++.+.+.+|....
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 346788999999999999998532212 2344455567889999999999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q 047017 523 VYKEISHLA 531 (534)
Q Consensus 523 ~~~~~~~~~ 531 (534)
+|+++..-+
T Consensus 183 k~eealeDy 191 (271)
T KOG4234|consen 183 KYEEALEDY 191 (271)
T ss_pred hHHHHHHHH
Confidence 999887543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.80 E-value=3 Score=43.58 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHH
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVI--SYNIIILGF 449 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~ 449 (534)
|...+..+.....+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33444445556677777766665432 124466778888888888888776431 1222 124677778
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 450 CKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 450 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
...+++-+|-+++.+..+. | . ..+..+++...|++|.+.....-
T Consensus 1010 ~e~~kh~eAa~il~e~~sd---~-~----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD---P-E----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhcC---H-H----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 8889988888888777542 1 1 12233444556666666554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.67 Score=36.09 Aligned_cols=83 Identities=8% Similarity=0.026 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR 454 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 454 (534)
++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+..+.+.. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3333344444444444444444433 233444444444444332 2222333321 1122223334445555555
Q ss_pred hHHHHHHHHHH
Q 047017 455 INESIEVLAAM 465 (534)
Q Consensus 455 ~~~A~~~~~~~ 465 (534)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.89 Score=37.35 Aligned_cols=75 Identities=13% Similarity=-0.033 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 94 VMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
-|.......|.-+.+|+.+.-.+...|+++.|.+.|+...+. .|. ..+...-.-.+.-.|++.-|.+-+...-+.
T Consensus 87 DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 87 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 334444444555556666666666666666666666666554 221 111111112223345555555555444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.75 Score=36.23 Aligned_cols=130 Identities=18% Similarity=0.101 Sum_probs=85.5
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-h--HHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYG--EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVV-T--YNI 146 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~--~~~ 146 (534)
...|...++ +.+.++.++|+.-|..+.+.+ .-..-+...........|+...|...|+++-...-.|-+. . ..-
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444444 456778888888888888877 2333444555666777888888999998887652222221 1 111
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
-...+...|.++......+-+...+-+.-...-..|.-+-.+.|++.+|.++|..+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 22345678888888888777766554444555667777777888888888888876
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.033 Score=30.52 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..+..+...+...|++++|++.++++++..|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35566777778888888888888888877765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.31 Score=36.82 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLR---------------SRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD- 170 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 170 (534)
.++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|+++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555555554431 1234578888889999999999999999999888754
Q ss_pred CCCCCHhhHHHHHHHHHhc
Q 047017 171 NCKPTVITYTILIQATMLE 189 (534)
Q Consensus 171 ~~~~~~~~~~~l~~~~~~~ 189 (534)
+++.+..+|..|++-....
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5666778888888765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.29 Score=38.92 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---C-------CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC-
Q 047017 53 FDESLYFIESMVANGCKPDVVMCTKLIKKFFQE---R-------KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ- 121 (534)
Q Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 121 (534)
|+.|++.++.....+ |.|.+.++.-+.++... . .+++|+.-|++++..+|....++..+..++...+.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 566777777765555 66777665544444332 2 24556666777777778888888888888876542
Q ss_pred ----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 122 ----------IELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 122 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
+++|.+.|++.... +|+...|+.-+... .+|-++..++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 45566666666665 78888888776654 35667777776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.9 Score=35.37 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=18.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 78 LIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
++..+...+.......+++.+...++.++..++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 33333334444444444444444433344444444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.024 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047017 95 MEILEKYGEPDVFAYNALISGFCKANQIELAN 126 (534)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 126 (534)
|++.++.+|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444555556666666666666666655553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.04 Score=30.27 Aligned_cols=32 Identities=19% Similarity=0.039 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
.+|..++.++...|++++|+..|+++++.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777776664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.3 Score=39.80 Aligned_cols=90 Identities=17% Similarity=0.040 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHH-HHcCCCHHHHHHHHHHHH
Q 047017 91 AVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGS-LCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~ 168 (534)
...+|+.+..+-+.|+..|...+..+.+.+.+.+...+|.+|... +| ++..|-..... |...-+++.|..+|.+.+
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--HPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 445667777666778999999998888888899999999998876 33 34445433333 333444889999999888
Q ss_pred hCCCCCCHhhHHHHH
Q 047017 169 RDNCKPTVITYTILI 183 (534)
Q Consensus 169 ~~~~~~~~~~~~~l~ 183 (534)
+.+ |.++..|....
T Consensus 168 R~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFN-PDSPKLWKEYF 181 (568)
T ss_pred hcC-CCChHHHHHHH
Confidence 875 44555444433
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.5 Score=39.58 Aligned_cols=99 Identities=8% Similarity=0.007 Sum_probs=65.7
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChHHHHHHHHHHHH-cCCCCCHHH
Q 047017 401 EPDEIT-YNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFC--KTRRINESIEVLAAMFE-KGCKPNETT 476 (534)
Q Consensus 401 ~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~~~~~~ 476 (534)
.|+..+ -+.++..+.+.|-..+|...+..+... ++|+...|..++..-. ..-+...+.++++.|.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 344333 355667777788888888888888765 4556666666664321 12236677788888876 35 46777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 477 YVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 477 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
|......=...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77777666678888877777776665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.88 Score=34.01 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
..+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++.+.|.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555556655555555555442 245556666666666666666666666666665554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.23 Score=43.10 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHhhHHHH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLR-----DNCKPTVITYTIL 182 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 182 (534)
++..+++.+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666666666666666666666552 22555666666666666666666666665543 3556665555544
Q ss_pred HHH
Q 047017 183 IQA 185 (534)
Q Consensus 183 ~~~ 185 (534)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.4 Score=35.67 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=62.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 411 ISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 411 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
...+...|++++|...++.........+ ..+-..|.+.....|.+++|+.+++.....+.. ......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 3456677888888888877664311111 112224566777888888888888877554332 233345567788888
Q ss_pred CHHHHHHHHHHHHHcCCCch
Q 047017 489 WRAEAMELANALVSMHAISR 508 (534)
Q Consensus 489 ~~~~A~~~~~~~~~~~~~~~ 508 (534)
+.++|+.-|++.++.++.++
T Consensus 174 ~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 174 DKQEARAAYEKALESDASPA 193 (207)
T ss_pred chHHHHHHHHHHHHccCChH
Confidence 88888888888888874443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.99 Score=33.76 Aligned_cols=65 Identities=26% Similarity=0.315 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047017 230 ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL 295 (534)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (534)
......+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.++++++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555666666666666666666542 245666666667777777777777777776666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.5 Score=37.58 Aligned_cols=164 Identities=12% Similarity=0.149 Sum_probs=81.3
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHHhcC-CHhHHHHHHHHhcccccCChHHHHHHHHH-HHH
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVIT-------YTILIQATMLEG-QTDKAMKLLDEMGMCKKGMVGQAFQFVRS-LES 222 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~ 222 (534)
.+.|+++.|..++.++.......++.. +..++......+ +++.|..++++. .++++. -..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a-----------~~~l~~~~~~ 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA-----------YDILEKPGKM 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-----------HHHHHhhhhc
Confidence 345666777766666654321112221 222233334555 888888877764 444433 111
Q ss_pred cCCCCC-----HhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047017 223 RGCQPD-----VISYNMLLRTLLNMGKWE---EGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKG 294 (534)
Q Consensus 223 ~~~~~~-----~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (534)
....++ ..++..++.++...+..+ +|..+++.+...... .+..+..-+..+.+.++.+.+.+.+..|...-
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 111222 234566667777766654 344555555443211 24444455666666778888888888887752
Q ss_pred CCCCHhcHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 047017 295 LTPDAYSYDPLISAYCK--DGRLDLAIEFLDYMISD 328 (534)
Q Consensus 295 ~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 328 (534)
......+...+..+.. ......+...++.++..
T Consensus 152 -~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 152 -DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred -ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 2122334444433321 12233444445444443
|
It is also involved in sporulation []. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.7 Score=40.54 Aligned_cols=108 Identities=15% Similarity=-0.018 Sum_probs=73.2
Q ss_pred HHhcCCHHHHHHHHHHHH---hCCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCC-----
Q 047017 414 LCRDGMVDEAVGLLVDME---STRFRPT-----VISYNIIILGFCKTRRINESIEVLAAMFE-------KGCKPN----- 473 (534)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~----- 473 (534)
+.-.|++.+|.+++...- ..|...+ -..||.+...+.+.|.+.-+..+|.++++ .|+.|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445688888888775431 1121112 22346666666677777777777777764 354442
Q ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 474 -----ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 474 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
..+.....-.|.+.|++-.|.+.|.+.+...-.+|..|.+++.|....
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 122333455688999999999999999999999999999999888653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.4 Score=34.54 Aligned_cols=55 Identities=11% Similarity=-0.102 Sum_probs=30.8
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 81 KFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
.-...++.+++..++..+.-..|..+..-..-...+...|++.+|..+|+.+...
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3344555666666666555555555554444455555666666666666665544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=2.1 Score=35.27 Aligned_cols=179 Identities=18% Similarity=0.091 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q 047017 334 IVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPDEITYNSLIS 412 (534)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 412 (534)
+.+++.+.-.+...|+++.|.+.|+...+.. |....+...-.-++.-.|++.-|.+-+.+.-+.+. .|-...|-.+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4556666666666666666666666666553 22222222222233344566666555544443321 111122221111
Q ss_pred HHHhcCCHHHHHHHH-HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHH
Q 047017 413 CLCRDGMVDEAVGLL-VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-------ETTYVLLIEGI 484 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 484 (534)
..-++.+|..-+ ++... .+..-|...+..+. .|+..+ ..+++++.. +-..+ .++|--+.+-+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a-~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERLKA-DATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHHHh-hccchHHHHHHHHHHHHHHHHHH
Confidence 223444444333 33332 13333332222221 122111 112222222 11111 34566677777
Q ss_pred HccCCHHHHHHHHHHHHHcCCCc----hHHHHHHHhhcchHHH
Q 047017 485 GYGGWRAEAMELANALVSMHAIS----RDTFKRLNRTFPLLDV 523 (534)
Q Consensus 485 ~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 523 (534)
...|+.++|..+|+-++..+.-+ .-++..|++.+....+
T Consensus 248 l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~ 290 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDD 290 (297)
T ss_pred hccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccch
Confidence 78888888888888777655422 2334445555544433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.48 Score=43.72 Aligned_cols=125 Identities=11% Similarity=-0.064 Sum_probs=77.4
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
-...|+.-.|-+-+....+. .+.++.............|+++.+...+...... +.....+...+++.....|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 33466666665444444333 2444444444555566778888888777665443 334456667777777778888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 424 VGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
..+-+.|....++ +..+...........|-++++...|++....+.+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8887777766554 4444444444445567778888888887776533
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=6.1 Score=39.87 Aligned_cols=415 Identities=10% Similarity=0.032 Sum_probs=194.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ--ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
-+....+.|++..+.++...+... +. ..|..-...... ...+++....++..... |.....-......+.+.+
T Consensus 39 ~A~~a~~~g~~~~~~~~~~~l~d~--pL--~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~-P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 39 QIKQAWDNRQMDVVEQLMPTLKDY--PL--YPYLEYRQLTQDLMNQPAVQVTNFIRANPTL-PPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCC--Cc--HhHHHHHHHHhccccCCHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHcc
Confidence 344466778888877776665321 11 222211111111 22334333333322211 333334444455566667
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 047017 121 QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLD 200 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 200 (534)
++....+.+.. .+.+.......+.+....|+.++|......+-..| ...+.....++..+.+.|.+.... ++.
T Consensus 114 ~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~ 186 (644)
T PRK11619 114 DWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA-YLE 186 (644)
T ss_pred CHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH-HHH
Confidence 77766653211 13355555667777788888877877777766555 445566777888877777665544 223
Q ss_pred Hh-cccccCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHh
Q 047017 201 EM-GMCKKGMVGQAFQFVRSLESRGCQPD-VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYS--ILISSLCR 276 (534)
Q Consensus 201 ~~-~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 276 (534)
++ .....|+...|..+...+ .++ ......++..+ .+...+...+.. ++|+...-. .+.-.-..
T Consensus 187 R~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 187 RIRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHH
Confidence 22 334455555555554433 112 11222222222 222222222221 112221111 11111123
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCH--hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 047017 277 DGKTEDAVDVLRAAKEKG-LTPDA--YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQA 353 (534)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 353 (534)
..+.+.|...+....... ..+.. .+...+.......+..+++...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445677888887764432 22111 122233322223322556666666544331 2444444445555577888888
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA-VGLLVDMES 432 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 432 (534)
...+..|.... .....-.--+..++...|+.++|...|+.+... .+ |..++.+ .+.|..-.- ...... ..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~~~~~~~~~-~~ 402 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG---FYPMVAA-QRLGEEYPLKIDKAPK-PD 402 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC---cHHHHHH-HHcCCCCCCCCCCCCc-hh
Confidence 77777775432 223344445666766678888888888876431 11 2222211 122211000 000000 00
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 433 TRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 433 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
..+. .. .-..-+..+...|....|...+..+... .+......+.......|.++.++....
T Consensus 403 ~~~~-~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 403 SALT-QG-PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred hhhc-cC-hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 0000 00 0112234455667777777777666653 233444555555556666666655443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.9 Score=34.09 Aligned_cols=123 Identities=12% Similarity=0.144 Sum_probs=64.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh-hHH--HHHHHHHhcCCH
Q 047017 310 CKDGRLDLAIEFLDYMISDGCLPDIV-NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVS-SYN--TMFSALWSSGDK 385 (534)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~~~~ 385 (534)
.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|.++-.....|... -.. .-...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34566667777777666655432221 12223344556667777777777665542122211 111 112234456666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 432 (534)
+......+.+...+-+.....-..|..+-.+.|++..|.+.|..+.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666665555443333333445555556666777777777766654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.089 Score=29.35 Aligned_cols=27 Identities=15% Similarity=-0.048 Sum_probs=19.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 476 TYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 476 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
++..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777888888888888888888554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.29 Score=42.95 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=46.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHH
Q 047017 46 RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA 125 (534)
Q Consensus 46 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 125 (534)
.|+++|.|++|+.+|...+... +.++..+..-..+|.+..++..|..-.+.+...+..-..+|..-+.+-...|...+|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555666666666665555443 335555555555566666665555555555544433334444444444444555555
Q ss_pred HHHHHHHHhC
Q 047017 126 NKVLDRLRSR 135 (534)
Q Consensus 126 ~~~~~~~~~~ 135 (534)
.+-++..++.
T Consensus 185 KkD~E~vL~L 194 (536)
T KOG4648|consen 185 KKDCETVLAL 194 (536)
T ss_pred HHhHHHHHhh
Confidence 5555554444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.44 Score=40.72 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC----------------CHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 047017 121 QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG----------------MIESAFKVFDQLLRDNCKPTVITYTILIQ 184 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 184 (534)
.++-.-..++.|.+.|+..|..+|+.|+..+-+.. +-+-+++++++|...|+-||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 34444455666777777777777777776654322 23568899999999999999999999999
Q ss_pred HHHhcCCH
Q 047017 185 ATMLEGQT 192 (534)
Q Consensus 185 ~~~~~g~~ 192 (534)
++.+.+-.
T Consensus 167 ~FGr~~~p 174 (406)
T KOG3941|consen 167 AFGRWNFP 174 (406)
T ss_pred Hhcccccc
Confidence 98776643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.62 Score=39.88 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 047017 367 PNVSSYNTMFSALWSS-----GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVIS 441 (534)
Q Consensus 367 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 441 (534)
-+..+|...+..+... +..+-.-..++.|.+.|+.-|..+|+.|+..+-+..- .|. .+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence 3555666666655432 3444455556667777777777777777766544221 111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047017 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWR 490 (534)
Q Consensus 442 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 490 (534)
+....--|-+ .-+=++.++++|...|+.||.++-..|++++.+.|..
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111211 2234788999999999999999999999999888743
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.11 Score=28.16 Aligned_cols=29 Identities=21% Similarity=-0.042 Sum_probs=20.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..++.++.+.|++++|.+.|+++++..|.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34566666777777777777777777665
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=8.8 Score=38.79 Aligned_cols=256 Identities=11% Similarity=0.033 Sum_probs=135.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG 155 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 155 (534)
..-+..+.+.+++......+ ...|.+.......+.+....|+.++|......+-..| .........++..+.+.|
T Consensus 103 ~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 33444555666666555522 2226677777777888888999888877777665444 223445555555555444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc----------ccCChHHHHHHHHHHHHcCC
Q 047017 156 MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC----------KKGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~~~ 225 (534)
.+... ..+.- +......|+...|..+...+... -..+...+...+ ...
T Consensus 178 ~lt~~----------------d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~-----~~~ 235 (644)
T PRK11619 178 KQDPL----------------AYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA-----RTT 235 (644)
T ss_pred CCCHH----------------HHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh-----hcc
Confidence 43221 12211 22223344444443333332100 000111111111 111
Q ss_pred CCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCC-CCCCh--hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 047017 226 QPDVISYNMLLRT--LLNMGKWEEGEKLMTEMISRG-LEPNV--VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAY 300 (534)
Q Consensus 226 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (534)
+++...-..++.+ -....+.+.|...+....... ..+.. ..+..++......+...++...+....... .+..
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~ 313 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTS 313 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcH
Confidence 2232111212222 223556788999998875442 22221 233444444444432566777776554332 2445
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 047017 301 SYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLS 361 (534)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 361 (534)
....-+......++++.+...+..|.... .......--+..++...|+.++|...|+.+.
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55566666678999999999998876542 2344445556777777999999999999974
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.63 E-value=2.4 Score=32.01 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=55.4
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 436 RPTVISYNIIILGFCKTRR---INESIEVLAAMFE-KGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
.++..+--.+.+++.+..+ ..+.+.+++...+ ..+.-.......|.-++.+.++++.++++.+.+++..|+++++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4556666667777777654 4567778888886 32222344445667788899999999999999999998888765
Q ss_pred HH
Q 047017 512 KR 513 (534)
Q Consensus 512 ~~ 513 (534)
..
T Consensus 109 ~L 110 (149)
T KOG3364|consen 109 EL 110 (149)
T ss_pred HH
Confidence 54
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.24 Score=26.97 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=7.2
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 047017 44 IKRSFRAGKFDESLYFIESM 63 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~ 63 (534)
...+...|++++|++.|+++
T Consensus 8 g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 8 GQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 33333333333333333333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.57 E-value=17 Score=41.65 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------HH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN--------ET 475 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~ 475 (534)
..+|-...+.....|.++.|...+-...+.+ -+..+-..+.-....|+...|+.++++.++... |+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~-~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF-PDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc-ccccCCccccch
Confidence 3567777777777899999988877766653 233445566677788999999999988886432 12 11
Q ss_pred HHHHHH---------HHHHccCC--HHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 476 TYVLLI---------EGIGYGGW--RAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 476 ~~~~l~---------~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.-+..+ .-....|+ -.+..++|+.+.+..|...+.++.+++.|.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 111111 11223343 345678888888888877777777775443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.55 E-value=8.6 Score=38.22 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHHHcCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHcCC--
Q 047017 88 SNKAVRVMEILEKYGEPDVFAYNALISG---FCKANQIELANKVLDRLRS-------RGFSPDVVTYNIMIGSLCSRG-- 155 (534)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-- 155 (534)
...|..+++.....+.........++.. +....|.+.|+.+|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 3567777777766543322222222222 2244577778887777765 33 2334455556665532
Q ss_pred ---CHHHHHHHHHHHHhCC
Q 047017 156 ---MIESAFKVFDQLLRDN 171 (534)
Q Consensus 156 ---~~~~a~~~~~~~~~~~ 171 (534)
+...|..++.+....|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG 323 (552)
T ss_pred ccccHHHHHHHHHHHHhcC
Confidence 4566777777776665
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.21 Score=27.82 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
+|..|...|...|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366788888888888888888888553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.4 Score=35.84 Aligned_cols=97 Identities=14% Similarity=-0.044 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHHHHHHH
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCK---PNETTYVLL 480 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l 480 (534)
.+..++..|.+.|+.+.|.+.+.++.+....+. ...+-.+++.....+++..+...+.++...--. ++...-...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666665433332 234445566666666666666666555442111 111111111
Q ss_pred HH--HHHccCCHHHHHHHHHHHHH
Q 047017 481 IE--GIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 481 ~~--~~~~~g~~~~A~~~~~~~~~ 502 (534)
.. .+...+++.+|-+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11 23345677777666655443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.19 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 476 TYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 476 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
+|..+...+...|++++|...|+++++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666677777777777777777776655
|
... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.19 E-value=11 Score=38.41 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=114.9
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHH-HHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHH
Q 047017 150 SLCSRGMIESAFKVFDQLLRDNCKPTVI-------TYTILI-QATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLE 221 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 221 (534)
......++++|..++.++...-..|+.. .++.+- ......|+++++.++.+.. +..+.
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~a--------------l~~L~ 489 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLA--------------LVQLP 489 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------HHhcc
Confidence 3456788899998888876542232221 122221 1123456666666655543 11222
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-----HHHHHhCCCh--hHHHHHHHHHHHCC
Q 047017 222 SRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSIL-----ISSLCRDGKT--EDAVDVLRAAKEKG 294 (534)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~--~~a~~~~~~~~~~~ 294 (534)
.....+....+..+..+..-.|++++|..+.....+..-.-+...+..+ ...+...|+. ++....+.......
T Consensus 490 ~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~ 569 (894)
T COG2909 490 EAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH 569 (894)
T ss_pred cccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2223345566777788888899999999888776654222233333222 2335566632 33333333333221
Q ss_pred ---CC---CCHhcHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 295 ---LT---PDAYSYDPLISAYCKD-GRLDLAIEFLDYMISDGCLPDIVN--YNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 295 ---~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
.+ +-..+...+..++.+. +...++..-+.-.......|-... +..++......|+.++|...+.++.....
T Consensus 570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 11 1122334444444441 122222223322222211111122 23567778889999999998888866532
Q ss_pred CCCH----hhHHHHH--HHHHhcCCHHHHHHHHHH
Q 047017 366 PPNV----SSYNTMF--SALWSSGDKIRALGMISE 394 (534)
Q Consensus 366 ~~~~----~~~~~l~--~~~~~~~~~~~a~~~~~~ 394 (534)
.+.. .+-...+ ......|+...+.....+
T Consensus 650 ~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 650 NGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2221 1111122 223456777777666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.2 Score=36.23 Aligned_cols=96 Identities=9% Similarity=-0.030 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNI--- 146 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--- 146 (534)
..+..++..|.+.|+.+.|.+.|..+...- ..-...+..+++.....|++..+...+.++...-..++......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678888888888888888888877654 22345667778888888888888888777654411111111111
Q ss_pred H--HHHHHcCCCHHHHHHHHHHHH
Q 047017 147 M--IGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 147 l--~~~~~~~g~~~~a~~~~~~~~ 168 (534)
. .-.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 122345678888877776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.4 Score=38.37 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 047017 336 NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS-----KGIEPDEITYNSL 410 (534)
Q Consensus 336 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 410 (534)
++..++..+...++.+.+...++.+.... |-+...|..++.+|...|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555566666666666665553 55555566666666666666666655555543 2455554444333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=4.1 Score=33.09 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-----HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTY-----NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATML 188 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (534)
..+...|++++|...++..... + ....+ .-|.+.....|.+++|+.+++.....+. .......-..++..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~--t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ--T-KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc--c-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3344455555555555554432 1 11111 1233444555555555555555443321 11222333444555
Q ss_pred cCCHhHHHHHHHHh
Q 047017 189 EGQTDKAMKLLDEM 202 (534)
Q Consensus 189 ~g~~~~a~~~~~~~ 202 (534)
.|+-++|..-|...
T Consensus 172 kg~k~~Ar~ay~kA 185 (207)
T COG2976 172 KGDKQEARAAYEKA 185 (207)
T ss_pred cCchHHHHHHHHHH
Confidence 55555555555554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.96 E-value=12 Score=38.18 Aligned_cols=225 Identities=11% Similarity=0.013 Sum_probs=111.1
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHh-------cHHHH-HHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 047017 275 CRDGKTEDAVDVLRAAKEKGLTPDAY-------SYDPL-ISAYCKDGRLDLAIEFLDYMISD----GCLPDIVNYNTILA 342 (534)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 342 (534)
....++.+|..++.++...-..|+.. .+..+ .......|+++.|.++.+..... ...+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45667888888777766532222211 12222 12234578888888887777654 12234455666777
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCHhh---HHHH--HHHHHhcCCHH--HHHHHHHHHHHC---CCC---CCHHHHHH
Q 047017 343 AFCKNGNADQALEIFEKLSDVGCPPNVSS---YNTM--FSALWSSGDKI--RALGMISEMLSK---GIE---PDEITYNS 409 (534)
Q Consensus 343 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~~--~a~~~~~~~~~~---~~~---~~~~~~~~ 409 (534)
+..-.|+++.|..+.....+....-+... |..+ ...+..+|+.. +.+..+...... ..+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778888888887776654421222222 2222 23345556322 222223222211 011 11233344
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Q 047017 410 LISCLCR-DGMVDEAVGLLVDMESTRFRPTVISY--NIIILGFCKTRRINESIEVLAAMFEKGCKP----NETTYVLLIE 482 (534)
Q Consensus 410 l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~ 482 (534)
+..++.+ .+...++..-+.--......|-.... ..|+......|+.++|...+.++......+ +-.+-...++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4444444 11122222222222222122211112 256677778899999888888887632222 2222222222
Q ss_pred --HHHccCCHHHHHHHHHH
Q 047017 483 --GIGYGGWRAEAMELANA 499 (534)
Q Consensus 483 --~~~~~g~~~~A~~~~~~ 499 (534)
.....|+..++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23366788887777666
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.88 E-value=3.5 Score=31.84 Aligned_cols=53 Identities=11% Similarity=-0.050 Sum_probs=30.9
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
...++++++..++..+.-..|.....-..-...+...|++.+|..+|+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 34566666666666665555555544444455555666666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.3 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMV 64 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~ 64 (534)
..+...+...|++++|+..|++++
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHH
Confidence 333333444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.48 E-value=2.5 Score=34.63 Aligned_cols=77 Identities=18% Similarity=0.045 Sum_probs=41.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHH
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK---GCKPNETTYVLLIEGIGYGGWRAE 492 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 492 (534)
+.|+ +.|...|-.+...+.-.++.....|+..|. ..+.++++.++.++++. +-.+|+..+..|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 455555555555443334444444443333 55666666666666552 224456666666666666666665
Q ss_pred HH
Q 047017 493 AM 494 (534)
Q Consensus 493 A~ 494 (534)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 53
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.93 Score=39.97 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=49.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRP-TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRA 491 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 491 (534)
-|.++|.+++|+..|.+.+.. .| +.+++..-+.+|.+..++..|..=...++..+- .=...|+.-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 455666666666666555443 23 555555555566666665555544444443210 01122333333333445666
Q ss_pred HHHHHHHHHHHcCCCchHHHH
Q 047017 492 EAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 492 ~A~~~~~~~~~~~~~~~~~~~ 512 (534)
+|.+-++.++++.|.+.+.-.
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHH
Confidence 666666666666666544333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.40 E-value=2.3 Score=37.23 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 419 MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
++++++.++..=++.|+-||..+++.+++.+.+.+++.+|..+.-.|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555444443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.39 E-value=7.3 Score=36.59 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=28.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc-----hHHHHHHhhhhhc
Q 047017 486 YGGWRAEAMELANALVSMHAISRDTFKRLNRTFP-----LLDVYKEISHLAT 532 (534)
Q Consensus 486 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~ 532 (534)
+.|+.-.|...-+++++. +.-..++..|+..|. .+++-.||..+++
T Consensus 521 ~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~ 571 (696)
T KOG2471|consen 521 ELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLS 571 (696)
T ss_pred HhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccC
Confidence 567887888777777764 233455666665554 3555666665543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.2 Score=31.16 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 422 EAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
++.+-++.+......|++.+..+.+++|.+.+++..|+++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444445555555555555555444433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.3 Score=29.44 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 458 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
..+-++.+...++.|++.+..+.+++|.+.+++.-|.++++.+..+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.96 E-value=8.8 Score=34.34 Aligned_cols=134 Identities=15% Similarity=0.239 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCH-
Q 047017 281 EDAVDVLRAAKEKGLTPDAYSYDPLISAYCK--DG----RLDLAIEFLDYMISDGCL---PDIVNYNTILAAFCKNGNA- 350 (534)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~- 350 (534)
++...+++.+.+.|+.-+..++......... .. ...++..+++.|.+.... ++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556777888888877666554443322222 12 255788888888876422 223334434332 33333
Q ss_pred ---HHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 351 ---DQALEIFEKLSDVGCPPNV--SSYNTMFSALWSSGD--KIRALGMISEMLSKGIEPDEITYNSLISCLCR 416 (534)
Q Consensus 351 ---~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 416 (534)
+.+..+|+.+.+.|+..+- .....++..+....+ ..++..+++.+.+.|+++....|..++-...-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence 4566677777776654332 333444433322222 34677888888888888777777665544433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.92 E-value=6.1 Score=38.15 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=58.6
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFK 162 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 162 (534)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 648 l~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 44566666666554432 555677777777777777777777766542 3355555666666555555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 163 VFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+-....+.| . .|....+|...|+++++.+++.+
T Consensus 714 la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQG-K-----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHHHHh
Confidence 555555544 2 22333455667777777776654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.80 E-value=16 Score=36.97 Aligned_cols=189 Identities=17% Similarity=0.195 Sum_probs=106.8
Q ss_pred HHHHHHHHHHH-CCCCCC--HhhHHHHHHHHH-hcCCHhHHHHHHHHHHHcCCCCh------hhHHHHHHHHHhcCCHHH
Q 047017 55 ESLYFIESMVA-NGCKPD--VVMCTKLIKKFF-QERKSNKAVRVMEILEKYGEPDV------FAYNALISGFCKANQIEL 124 (534)
Q Consensus 55 ~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~ 124 (534)
.|++.++.+.+ ...+|. ..++..++..+. ...+++.|+..+++.......+. ..-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 36777777773 333443 335566777776 78899999999998765542211 12345567776666555
Q ss_pred HHHHHHHHHhCC----CCCChhhHHHH-HHHHHcCCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHH--hcCCHhH
Q 047017 125 ANKVLDRLRSRG----FSPDVVTYNIM-IGSLCSRGMIESAFKVFDQLLRDN---CKPTVITYTILIQATM--LEGQTDK 194 (534)
Q Consensus 125 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~ 194 (534)
|...+++..+.- ..+-...+..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. ..+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 988888876541 11122233333 333333489999999998887542 2444444555554433 3455566
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHH--HHcCCCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSL--ESRGCQPDVISYNMLLRTL--LNMGKWEEGEKLMTEM 255 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 255 (534)
+.+.++.+ ....... ......|...+|..++..+ ...|+++.+...++++
T Consensus 198 ~~~~l~~~-----------~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRA-----------IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHH-----------HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66655544 1111111 0111234455666666554 5577777777666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=9.1 Score=34.02 Aligned_cols=124 Identities=18% Similarity=0.141 Sum_probs=58.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047017 368 NVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDG-MVDEAVGLLVDMESTRFRPTVISYNIII 446 (534)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 446 (534)
+..+-...+.++...++ ..+...+-.+.+. ++..+-...+.++...+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555555554 3444444444432 23333333333333322 12344444444442 33444555555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +|...++++.+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 56666555 34555554444432 1 223455566666654 46666666665554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.67 E-value=7.3 Score=32.75 Aligned_cols=18 Identities=6% Similarity=0.124 Sum_probs=9.2
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 416 RDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~ 433 (534)
..+++.+|+++|++....
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.57 E-value=9.8 Score=34.06 Aligned_cols=61 Identities=15% Similarity=0.295 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHc--CCC----HHHHHHHHHHHHhCCC---CCCHhhHHHHH
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMIGSLCS--RGM----IESAFKVFDQLLRDNC---KPTVITYTILI 183 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~ 183 (534)
++...+++.+.+.|+..+..+|.+....... ..+ ...|..+|+.|++... .++..++..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 4456778888888888777776653333332 222 4678899999988742 23334444444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.50 E-value=6.1 Score=31.56 Aligned_cols=135 Identities=14% Similarity=0.112 Sum_probs=68.8
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
.++.+.+.+.+++++...+..++..+.+.|++.....++ ..++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 455556666677777778888888888777765544433 3344444443333332221 2223333333333321
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 434 RFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
=...+..++..+...|++-+|+++.......+ ......++.+..+.+|..--..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00123455667777788887777776642211 11123455555556655544444443333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.34 E-value=6 Score=31.17 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=62.8
Q ss_pred ChhhHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 36 KETQFMKLI---KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 36 ~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
+......|+ ..-...++.+.+..++.-+.-.. |.....-..-+..++..|++.+|..+|+.+....+..+..-..+
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 344444444 44557889999999999887653 33344444455667899999999999999988766555555444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 047017 113 ISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
.-++...|+. .-...-+++.+.
T Consensus 85 A~CL~~~~D~-~Wr~~A~evle~ 106 (160)
T PF09613_consen 85 ALCLYALGDP-SWRRYADEVLES 106 (160)
T ss_pred HHHHHHcCCh-HHHHHHHHHHhc
Confidence 4444444443 223333444544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.06 E-value=19 Score=36.39 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=21.4
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcch
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
.+.+.|++++|.+.++++- .-|.++......+..+..
T Consensus 514 ~~~~~g~~~~AL~~i~~L~-liP~~~~~V~~~a~~f~~ 550 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKLD-LIPLDPSEVRRCAENFRQ 550 (613)
T ss_dssp HHHHTT-HHHHHHHHHHTT--S-S-HHHHHHHHHCGCC
T ss_pred HHHHcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHhc
Confidence 3557899999998887764 445555555555444443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.02 E-value=4.8 Score=31.13 Aligned_cols=78 Identities=6% Similarity=-0.013 Sum_probs=51.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ 121 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 121 (534)
++..-...++++++..+++.+.-.. |...+.-..-+..+...|++.+|.++|+.+....+..+..-..+..++.-.|+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3344456899999999999887653 33334334445567899999999999999998754444444444444333443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.80 E-value=3.5 Score=33.82 Aligned_cols=80 Identities=8% Similarity=-0.070 Sum_probs=60.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCC
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD---NCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~ 191 (534)
.+.+.|+ +.|.+.|-.+...+.--++.....|+..|. ..+.+++..++.+..+. +-.+|+..+..|+..|.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 4555565 667777777777665556666666766665 67889999999888764 236788999999999999999
Q ss_pred HhHHH
Q 047017 192 TDKAM 196 (534)
Q Consensus 192 ~~~a~ 196 (534)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.78 E-value=2.1 Score=37.46 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=72.5
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 67 GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG----EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVV 142 (534)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 142 (534)
|.+....+...++.......+++++..++-++.... .++.. -...++.+. .-++++++.++..-++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444445555555555555677888888877766543 11111 122333333 336788998888888889999999
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 143 TYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 143 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
+++.++..+.+.+++.+|..+...|+..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=12 Score=33.30 Aligned_cols=234 Identities=16% Similarity=0.083 Sum_probs=144.0
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCHhcH
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKT----EDAVDVLRAAKEKGLTPDAYSY 302 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 302 (534)
++.......+.++...|..+ +...+..+.. .+|...-...+.++...|+. .++...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 45666666666776666533 3333334433 33566666667777777763 4567777766443 3455555
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 303 DPLISAYCKDGRL-----DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 303 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..++..+-.+.+ .++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 5555555554321 233333433333 2366666677777777776 567777766665 345566666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 047017 378 ALWSSG-DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRIN 456 (534)
Q Consensus 378 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 456 (534)
++...+ +...+...+..+.. .++..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666653 24466777766664 4566777777888888887 56777666666542 2 234677888888885
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 457 ESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
+|+..+..+.+. .||..+....+.+|.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888888875 347777666666654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.7 Score=26.73 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=26.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
.+.-++.+.|++++|+++.+.+++..|.+..+....
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455677888888888888888888888888665543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.35 E-value=7.4 Score=32.84 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=58.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDV-VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
..|....++..|+..|.+++.. .|+. .-|..-+.++.+..+++.+..--...++..+..+.....+.........++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3455566777777777776664 3443 445556666777777777777777777766666666666777777777777
Q ss_pred HHHHHHHHHH
Q 047017 124 LANKVLDRLR 133 (534)
Q Consensus 124 ~a~~~~~~~~ 133 (534)
.|+..+.+..
T Consensus 96 eaI~~Lqra~ 105 (284)
T KOG4642|consen 96 EAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777663
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.20 E-value=23 Score=35.91 Aligned_cols=168 Identities=12% Similarity=0.191 Sum_probs=102.4
Q ss_pred ccChhhHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHh-----hHHHHHHHHHhcCCHhHHHHHHHHHHHcC-C---
Q 047017 34 DVKETQFMKLIKRSF-RAGKFDESLYFIESMVANGCKPDVV-----MCTKLIKKFFQERKSNKAVRVMEILEKYG-E--- 103 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~--- 103 (534)
.....++..+...+. ...+++.|...+++.......++.. ....++..+.+.+... |...++...+.- .
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 345566778888877 6889999999999986543232222 1234566666666555 999888877654 2
Q ss_pred -CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHH--HcCCCHHHHHHHHHHHHhCC-----
Q 047017 104 -PDVFAYNAL-ISGFCKANQIELANKVLDRLRSRG---FSPDVVTYNIMIGSL--CSRGMIESAFKVFDQLLRDN----- 171 (534)
Q Consensus 104 -~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~----- 171 (534)
.-...|..+ +..+...+++..|.+.++.+...- ..|...++..++.+. .+.+..+++.+.++.+....
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 112233333 233333479999999998887542 233344444444443 34566677777777664321
Q ss_pred ----CCCCHhhHHHHHHH--HHhcCCHhHHHHHHHHh
Q 047017 172 ----CKPTVITYTILIQA--TMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 172 ----~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~ 202 (534)
..|-..+|..++.. +...|+++.+...++.+
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12344556666554 44678888888777766
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.2 Score=42.38 Aligned_cols=116 Identities=9% Similarity=-0.075 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047017 401 EPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLL 480 (534)
Q Consensus 401 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 480 (534)
.|--..+|.....+...|+...|...+............+....|+....+.|-...|-.++.+.+... ...+.++..+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 333333444444445678999999988887654333344556677777888888888999988888765 3456777888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
.+++....+.+.|++.++.+.++.+.++..-..|..+
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999999999999999998777665544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.08 E-value=12 Score=32.71 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=37.6
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 138 SPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
.++..+....+..++..+++.+-.++++..... +...|...|..+++.-...|+..-..++..+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 445555556666666666666666666655543 3344555666666666666666655555554
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=90.06 E-value=20 Score=35.89 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH
Q 047017 452 TRRINESIEVLAAMFEKGCKPNE 474 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~ 474 (534)
.|++.+|.+.+-.+++.+..|..
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp -----------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHH
Confidence 46666666666666555555443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.071 Score=41.82 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=22.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 80 KKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISGFCKANQIELANKVLD 130 (534)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 130 (534)
..+.+.+.++....+++.+...+ ..+....+.++..|++.+..++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444454444433 3334444455555554444444444333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.88 E-value=3.5 Score=34.10 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 047017 407 YNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGC--KPNETTYVLLIEG 483 (534)
Q Consensus 407 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~ 483 (534)
.+.-+..+.+.+...+++...+.-++.+ +.+...-..++..++-.|++++|..-++-.-.... .+...+|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445566777788888888887776653 33555666778888888888888877776655422 2334556665543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.74 E-value=45 Score=38.61 Aligned_cols=324 Identities=10% Similarity=0.039 Sum_probs=156.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc
Q 047017 146 IMIGSLCSRGMIESAFKVFDQLLRDNC--KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR 223 (534)
Q Consensus 146 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 223 (534)
.+..+-.+.+.+..|...++.-..... ......+..+...|..-+++|....+...-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r--------------------- 1446 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR--------------------- 1446 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh---------------------
Confidence 344455567777788877777311110 112233444445777777777766655421
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 224 GCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
..+.. ...-+......|++..|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++
T Consensus 1447 --~a~~s-l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~ 1521 (2382)
T KOG0890|consen 1447 --FADPS-LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELN 1521 (2382)
T ss_pred --hcCcc-HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHH
Confidence 01222 2233344566788888888888888774 3346677777777777777777766555544431 11222222
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhCCCHH--HHHHHHHHHhhC--------CCC-CCH
Q 047017 304 P-LISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT--ILAAFCKNGNAD--QALEIFEKLSDV--------GCP-PNV 369 (534)
Q Consensus 304 ~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~--~A~~~~~~~~~~--------~~~-~~~ 369 (534)
. -..+--+.++++.....+. .. +...|.. ++....+..+-+ .-....+.+.+. +.. .-.
T Consensus 1522 s~~~eaaW~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~ 1594 (2382)
T KOG0890|consen 1522 SLGVEAAWRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYV 1594 (2382)
T ss_pred HHHHHHHhhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHH
Confidence 2 2223345666666555544 11 1111211 222222211111 111122222111 000 001
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCC-----ChhhH
Q 047017 370 SSYNTMFSALWSSGDKIRALGMISEML-SKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM-ESTRFRP-----TVISY 442 (534)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-----~~~~~ 442 (534)
..|..++..+.-.. .+.-.+.+.... ......+...|..-+..-....+..+-+--+++. ......| -..+|
T Consensus 1595 ~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1595 RSYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence 22333333222111 000001110000 0001111112222221111111111111111111 1111121 25678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
...++.....|.++.|...+-.+.+.+ -+..+...++-+...|+...|..++++.++.+..
T Consensus 1674 LqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 888998899999999999888887765 2456677888899999999999999999976543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.97 Score=25.91 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
.+++.+...|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677888888888888888888887763
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.62 E-value=25 Score=35.54 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
-.++-.|.++|++++|.++....... .......+...+..|...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 34566677788888887777444332 233445555666666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.55 E-value=2.3 Score=36.81 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
+.....|..+|.+.+|.++.++....+ +.+...+..++..++..||--.+.+-+++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 334444445555555555555444432 22444444455555555554444444433
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.38 E-value=3.8 Score=28.97 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=54.1
Q ss_pred CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047017 87 KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
..++|..+-+.+...+.....+-..-+..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++..-+.+
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 35666666666655432222233333455667888888888777663 678888776654 466776777777777
Q ss_pred HHhCCCCCCHhhHH
Q 047017 167 LLRDNCKPTVITYT 180 (534)
Q Consensus 167 ~~~~~~~~~~~~~~ 180 (534)
+...| .|....|.
T Consensus 94 la~sg-~p~lq~Fa 106 (115)
T TIGR02508 94 LAASG-DPRLQTFV 106 (115)
T ss_pred HHhCC-CHHHHHHH
Confidence 77766 55444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.35 E-value=14 Score=32.29 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=32.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 477 YVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 477 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
+......|..+|.+.+|.++.+++++.+|-+.+.+..|...+...|+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 34445666777777777777777777777777777777777766666
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.25 E-value=5.8 Score=38.26 Aligned_cols=130 Identities=21% Similarity=0.208 Sum_probs=65.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 267 YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346 (534)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (534)
.+.++..+.+.|-.++|+++- +|+.. -.....+.|+++.|.++..+. .+..-|..|..+...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhh
Confidence 344555555555555554432 22211 122334566666666554432 134456666666666
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047017 347 NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGL 426 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 426 (534)
.+++..|.+.|.+.... ..|+-.+...|+.+....+-....+.|.. + ....+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHH
Confidence 66666666666655432 24444455555555444444444444321 2 222344456666666666
Q ss_pred HHH
Q 047017 427 LVD 429 (534)
Q Consensus 427 ~~~ 429 (534)
+.+
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.19 E-value=21 Score=34.04 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=86.8
Q ss_pred CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047017 297 PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMF 376 (534)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 376 (534)
.|......++..+...-.+.-...+-.+++..| .+-..+..++.+|.+. ..+.-..+|+++.+..+ .+...-..++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344455556666666656666666666666543 3455566666666665 44555666666665432 2333333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHH
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPD-----EITYNSLISCLCRDGMVDEAVGLLVDMEST-RFRPTVISYNIIILGFC 450 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 450 (534)
..|.+ .+...+..+|.++...-++-. ...|..+... -..+.+....+..++... |...-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 556666666666554311100 1123333221 123444555554444332 22222333444445555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 451 KTRRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 451 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
...++++|++++..+++.+- .|......++..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 55666666666666655442 244444444443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.84 E-value=18 Score=32.95 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhCCC------------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 331 LPDIVNYNTILAAFCKNGN------------ADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
|.|..+|..++..--..-. .+.-+.+++++.+.+ |.+...+..++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5567777777654333211 233455666666553 555566666666666666666666666666664
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 047017 399 GIEPDEITYNSLISCLCR---DGMVDEAVGLLVDME 431 (534)
Q Consensus 399 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 431 (534)
. +-+...|..++..... .-.++....+|.+..
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 2 2245555555554433 223555555555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.51 E-value=21 Score=33.11 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=35.2
Q ss_pred HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 299 AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP---DIVNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
..++..++..+.+.|.++.|...+..+...+... .+......+...-..|+..+|+..++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666666666665532111 233333444455556666666666665554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.34 E-value=31 Score=35.03 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=58.9
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH---HcCCCHHHHHHHHHHHHhCC
Q 047017 95 MEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSL---CSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~ 171 (534)
++.-...++.+...+..|+..+.+.|++++....-..|.+. .+.+...|...+... ...++..++..+|++.+..-
T Consensus 102 ~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy 180 (881)
T KOG0128|consen 102 LEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY 180 (881)
T ss_pred HHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc
Confidence 33333333555566777778888888887766666666554 134566666555432 33466777778887776542
Q ss_pred CCCCHhhHHHHHHHH-------HhcCCHhHHHHHHHHh
Q 047017 172 CKPTVITYTILIQAT-------MLEGQTDKAMKLLDEM 202 (534)
Q Consensus 172 ~~~~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~ 202 (534)
. ++..|.-.+... .+.++++....+|.++
T Consensus 181 ~--~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ra 216 (881)
T KOG0128|consen 181 N--SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERA 216 (881)
T ss_pred c--cchHHHHHHHHHHhccccccccccchhhhHHHHHH
Confidence 2 223333333332 2335566666666654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.07 E-value=0.42 Score=42.14 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=57.1
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAF 161 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 161 (534)
...|.++.|++.|...+..+++....|..-..++.+.+.+..|++=+....+. .|| ...|-.-..+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 34566777777777777776666666666677777777777777766666655 333 223333334444567777777
Q ss_pred HHHHHHHhCCCCCCH
Q 047017 162 KVFDQLLRDNCKPTV 176 (534)
Q Consensus 162 ~~~~~~~~~~~~~~~ 176 (534)
..+....+.+..+..
T Consensus 203 ~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHhccccHHH
Confidence 777776666544433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.91 E-value=5.1 Score=33.23 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhHHHHHHH
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAYNALISG 115 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~ 115 (534)
...+..+++.++.++|+.+.++-++.. |.+...-..+++.++-.|++++|..-++.+-...+. ....|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445667777778888888777766654 556666677777777788888887777666655422 33445554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.84 E-value=1.2 Score=24.09 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=7.6
Q ss_pred HHHHHHhcCCHhHHHHHHHH
Q 047017 78 LIKKFFQERKSNKAVRVMEI 97 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~ 97 (534)
++..+...|++++|...|++
T Consensus 7 lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 7 LGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
|
... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=87.10 E-value=25 Score=32.60 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=60.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHH
Q 047017 410 LISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFC-KTRRINESIEVLAAMFEK------GCKPNETTYVLLIE 482 (534)
Q Consensus 410 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~ 482 (534)
.+..+.+.|.+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+..... ..-|+ ..|+. .-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~-aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSI-AL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHH-HH
Confidence 34567788999999999988888765556666666676664 567777777777766541 11233 23332 22
Q ss_pred HHHccCCH---------------HHHHHHHHHHHHcCCC
Q 047017 483 GIGYGGWR---------------AEAMELANALVSMHAI 506 (534)
Q Consensus 483 ~~~~~g~~---------------~~A~~~~~~~~~~~~~ 506 (534)
++...++. +.|...+++++...|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 34444444 7788777777766553
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.07 E-value=1.6 Score=24.89 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
.+++.+...|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777888888888888888877765
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.81 E-value=25 Score=32.14 Aligned_cols=107 Identities=13% Similarity=0.037 Sum_probs=73.9
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCC------------HhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 61 ESMVANGCKPDVVMCTKLIKKFFQERK------------SNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
++.++.. |.|..+|..++..--..-. .+.-+.+++++.+.+|.+...+..++..+.+..+.++..+.
T Consensus 9 ~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 9 NRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3333433 6678888877764332211 34556788888888888889999999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 047017 129 LDRLRSRGFSPDVVTYNIMIGSLCS---RGMIESAFKVFDQLLR 169 (534)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 169 (534)
++++.... +-+...|...+..... .-.++....+|.+.++
T Consensus 88 we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 88 WEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 99988772 2256777777765543 3346677777666553
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.66 E-value=8.4 Score=27.36 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 181 ILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 181 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
.+...+...++.+++..+.+.+.++..|+|++|..+.+.. ..||...|..+. -.+.|-.+.+...+.++...|
T Consensus 26 tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 26 TIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 3344444444445555555555555555555555554332 345666665443 345565565666665565554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=86.44 E-value=1.6 Score=22.67 Aligned_cols=29 Identities=17% Similarity=-0.003 Sum_probs=16.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 477 YVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 477 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
+..++..+...|++++|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34455555556666666666666655443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.40 E-value=9.9 Score=27.17 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047017 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 101 (534)
+..+-++.+...+.-|++......++++.+.+++..|.++|+.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555555555555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.37 E-value=16 Score=29.51 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHH
Q 047017 158 ESAFKVFDQLLRDNCKPTVITYTILIQATMLEG----QTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYN 233 (534)
Q Consensus 158 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (534)
++|..-|++.+..+ |....++..+..+|...+ +..+|...|+ +|...|++.... .|+...|+
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~-----------kA~~~FqkAv~~--~P~ne~Y~ 117 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFE-----------KATEYFQKAVDE--DPNNELYR 117 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHH-----------HHHHHHHHHHHH---TT-HHHH
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHH-----------HHHHHHHHHHhc--CCCcHHHH
Confidence 45555566666654 444567777777776543 4445555554 456667766665 57888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
.-+.... +|-++..++.+.+
T Consensus 118 ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 118 KSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHH------hhHHHHHHHHHHH
Confidence 7776653 4556666665553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.88 E-value=0.18 Score=44.29 Aligned_cols=89 Identities=20% Similarity=0.134 Sum_probs=57.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIGYGGWRAEA 493 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 493 (534)
...|.+++|++.+...+..+ ++....|..-..++.+.+++..|++=+...++.+ || ..-|-.-..+....|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 35677888888887777653 3455556666667777778887777777776643 33 22233333444556788888
Q ss_pred HHHHHHHHHcCCC
Q 047017 494 MELANALVSMHAI 506 (534)
Q Consensus 494 ~~~~~~~~~~~~~ 506 (534)
.+.+..+.+++..
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 8888888777654
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.50 E-value=2.2 Score=25.01 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=9.5
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 047017 446 ILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~ 466 (534)
..+|...|+.+.|.+++++.+
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.36 E-value=12 Score=31.67 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHhhH-----------HHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVAN------GCKPDVVMC-----------TKLIKKFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~-----------~~l~~~~~~~~~~~~a~~~~~~~~~~ 101 (534)
+...-...+.+.|++.+|...|++++.. .-+|...-| ....+++...|++-++++...+++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444556788899999999888876421 113333333 33344566667777777777777777
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 102 GEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 102 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
.+.+..+|..-+.+.+..-+..+|..-|..+++.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777765
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=85.32 E-value=2.2 Score=22.54 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 488 GWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 488 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
|+.+.|..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766544
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.24 E-value=1.5 Score=22.12 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=9.5
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 047017 42 KLIKRSFRAGKFDESLYFI 60 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~ 60 (534)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=85.23 E-value=12 Score=27.03 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=40.2
Q ss_pred CCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 047017 86 RKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFD 165 (534)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 165 (534)
...++|..+.+.+...+.....+-..-+..+.++|++++| ++.- ... ..||...|..|.. .+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~-~~~-~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA--LLLP-QCH-CYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH--HHHH-TTS---GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH--HHhc-ccC-CCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3456666666666665443333333444556667777777 1111 111 2456666555433 45666666666666
Q ss_pred HHHhCC
Q 047017 166 QLLRDN 171 (534)
Q Consensus 166 ~~~~~~ 171 (534)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665554
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=84.88 E-value=18 Score=30.61 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCChH-------HHHHHHHHHHHcCCCC----C-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 440 ISYNIIILGFCKTRRIN-------ESIEVLAAMFEKGCKP----N-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
..+..+++.|...|+.+ .|.+.|.+..+..-.| + ..+.-.++....+.|+.++|.++|.+++.....+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 34556677777777743 4556666655532121 2 2333456667778999999999999999876544
Q ss_pred h-HHHHHH
Q 047017 508 R-DTFKRL 514 (534)
Q Consensus 508 ~-~~~~~l 514 (534)
. ..+..+
T Consensus 199 ~~~~l~~~ 206 (214)
T PF09986_consen 199 KEPKLKDM 206 (214)
T ss_pred CcHHHHHH
Confidence 4 344433
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.80 E-value=51 Score=33.97 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=61.5
Q ss_pred HhcCCHHHHHHHHHHHHhC------CCCCChhhHHHHHHHHH---------------hcCChHHHHHHHHHHHHcCCCCC
Q 047017 415 CRDGMVDEAVGLLVDMEST------RFRPTVISYNIIILGFC---------------KTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
...|++.+|.+.|+.++-. .-..+..-...++..|. ..++.+.+.++-.-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4679999999999887632 01112222334444431 12344555444444444566664
Q ss_pred H--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 474 E--TTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 474 ~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
. .+....+..+.+.+++..|..+..++++..|.++.+
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 3 344567788999999999999999999999987744
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.63 E-value=18 Score=30.71 Aligned_cols=107 Identities=14% Similarity=0.012 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHh------CCCCCCh-----------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 047017 412 SCLCRDGMVDEAVGLLVDMES------TRFRPTV-----------ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNE 474 (534)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~------~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 474 (534)
+-+.+.|++.+|..-+.+++. ..-+|-. ..+..+..++...|++-++++.-.+.+.... -+.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~-~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP-GNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-chH
Confidence 344566777776666655421 0112222 2233445566778999999999999988753 367
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
..|-.-+++....=+.++|.+-|.++++++|.-.++..+-.+...
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le 309 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLE 309 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 777777777777778999999999999999988777776655554
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.38 E-value=26 Score=30.58 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVA 65 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 65 (534)
.......++-..||..|+...++..+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglq 63 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQ 63 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667788888888887665
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.24 E-value=8.1 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=22.5
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 462 LAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
+......++.|++.+....+++|.+.+|+.-|.++++-+..+-
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3444444555555555555555555555555555555554443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.89 E-value=2.2 Score=35.80 Aligned_cols=87 Identities=17% Similarity=0.058 Sum_probs=61.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTV-ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNET-TYVLLIEGIGYGGWR 490 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 490 (534)
.|....+++.|...+.+.+.. .|+. .-|..=+.++.+..+++.+..=-.++++. .|+.. ....+...+.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 455667788888877777664 5665 44556677788888888888777777765 44433 334566667777889
Q ss_pred HHHHHHHHHHHHc
Q 047017 491 AEAMELANALVSM 503 (534)
Q Consensus 491 ~~A~~~~~~~~~~ 503 (534)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999998888554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.55 E-value=28 Score=30.04 Aligned_cols=157 Identities=7% Similarity=0.079 Sum_probs=77.4
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCChhhHHHHHHHHHh
Q 047017 205 CKKGMVGQAFQFVRSLESRGCQPDVI---SYNMLLRTLLNMGKWEEGEKLMTEMISR---GL--EPNVVTYSILISSLCR 276 (534)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~ 276 (534)
......++|+.-|.++.+........ ....++....+.+++++....+.+++.- .+ ..+..+.+.++.....
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 34446666777776666554332222 2344556666677777776666666432 11 1233445555555555
Q ss_pred CCChhHHHHHHHHHHHC-----CCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----C-------CHHHHHHH
Q 047017 277 DGKTEDAVDVLRAAKEK-----GLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL----P-------DIVNYNTI 340 (534)
Q Consensus 277 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-------~~~~~~~l 340 (534)
+.+.+-...+++.-.+. +-..--.+-..+...|...+++.+..++++++....-. . -...|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 55555544444433221 00001112234555666666666666666665442100 0 12344555
Q ss_pred HHHHHhCCCHHHHHHHHHHHh
Q 047017 341 LAAFCKNGNADQALEIFEKLS 361 (534)
Q Consensus 341 ~~~~~~~~~~~~A~~~~~~~~ 361 (534)
+..|....+-.....+|++..
T Consensus 198 IQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHH
Confidence 556655555555556666553
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.26 E-value=48 Score=32.40 Aligned_cols=96 Identities=7% Similarity=-0.011 Sum_probs=62.8
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 40 FMKLIKRSF-RAGKFDESLYFIESMVANGCKPD-VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 40 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
+-.+...|. ..|+..+|+..+....-...+.. ......++..+.+.|...+|--++..+....+.-..-+..+..+++
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a 294 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA 294 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence 334444444 47888888888877665432222 2345667778888888888877776655544333333666777888
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSR 135 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~ 135 (534)
..|.+......|+...+.
T Consensus 295 ml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHALQA 312 (886)
T ss_pred HHhhhhhhhhhhhhhhcc
Confidence 888888877777777665
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=82.73 E-value=14 Score=25.96 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=15.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG 102 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 102 (534)
|.|......+...+...|++++|.+.+-.+.+.+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3344444455555555555555555554444443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.63 E-value=3.8 Score=24.05 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=18.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANG 67 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 67 (534)
.+.++|...|+.+.|..++++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677778888888888887777543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.98 E-value=10 Score=33.72 Aligned_cols=103 Identities=9% Similarity=-0.022 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTR---FRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLI 481 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 481 (534)
.+|..=+.-|.+..++..|...|.+-+... ...+...|+.-..+-...|++..|+.=...++..++. ....|..-.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhh
Confidence 445555666677777777777776655431 2223455555555555667777777666666665422 344444555
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 482 EGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
.++....++++|..+++...+......
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 566666777777777776655544443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.91 E-value=5.5 Score=26.82 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=23.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchHHHHH---HHhhcchHHHHHHhhh
Q 047017 486 YGGWRAEAMELANALVSMHAISRDTFKR---LNRTFPLLDVYKEISH 529 (534)
Q Consensus 486 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~ 529 (534)
..++.++|+..|+++++..+.+++.+.. +..+|...|+|+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655555544433 3344444555555443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.87 E-value=0.66 Score=36.28 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 341 LAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMIS 393 (534)
Q Consensus 341 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (534)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33333444444444444444443323334444444555544444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.45 E-value=4.6 Score=37.81 Aligned_cols=107 Identities=8% Similarity=0.023 Sum_probs=76.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ 121 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 121 (534)
.-+..++..+.|+.|+.++.++++.. +.....|..-..++.+.+++..|+.=+..+.+..|.....|..-..++.+.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34556777888888888888888764 33344444445777888888888888888888776666677777777777788
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047017 122 IELANKVLDRLRSRGFSPDVVTYNIMIGSL 151 (534)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (534)
+.+|...|+..... .|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 88888888877765 66655555554433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.67 E-value=42 Score=30.07 Aligned_cols=83 Identities=19% Similarity=0.182 Sum_probs=42.6
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----C
Q 047017 276 RDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK----N 347 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 347 (534)
..+++..+...+......+ +......+...|.. ..+..+|..++....+.+ .......+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4556667777776666533 22333333333332 234566666666555544 23333334444444 2
Q ss_pred CCHHHHHHHHHHHhhCC
Q 047017 348 GNADQALEIFEKLSDVG 364 (534)
Q Consensus 348 ~~~~~A~~~~~~~~~~~ 364 (534)
.+..+|..+|+++.+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 25566666666666655
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.43 E-value=17 Score=31.95 Aligned_cols=65 Identities=5% Similarity=-0.112 Sum_probs=39.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
.+-.+|.+.++++.|+.+.+.++...+. ++.-+.--+-.|.+.|.+..|..-++..++.-|..|.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 3445566667777777777666665422 4444444555566667777777777777666666553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 534 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 6e-05 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 92.2 bits (227), Expect = 1e-19
Identities = 42/304 (13%), Positives = 92/304 (30%), Gaps = 27/304 (8%)
Query: 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE-------LA 125
V C + K ++++ + +R+ + K P + + Q+E +A
Sbjct: 21 VPCGRWAKILEKDKR-TQQMRMQRLKAKLQMP---FQSGEFKALTRRLQVEPRLLSKQMA 76
Query: 126 NKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQA 185
+ D R SP ++ + ++ Q + +
Sbjct: 77 GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKC 136
Query: 186 TMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKW 245
+L Q A LL + + YN ++ G +
Sbjct: 137 CLLTDQLPLAHHLLVVH---------------HGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 246 EEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV-DVLRAAKEKGLTPDAYSYDP 304
+E ++ + GL P++++Y+ + + R + + L ++GL A
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 305 LISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG 364
L+S + L + LP VN + +L ++ L +
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQ 301
Query: 365 CPPN 368
C
Sbjct: 302 CLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.9 bits (221), Expect = 7e-19
Identities = 21/211 (9%), Positives = 51/211 (24%), Gaps = 4/211 (1%)
Query: 276 RDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV 335
R + A + ++ +P L+ LD+
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 336 NYNTILAAFCKNGNADQALEIFEKLSD---VGCPPNVSSYNTMFSALWSSGDKIRALGMI 392
A + + YN + G + ++
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 393 SEMLSKGIEPDEITYNSLISCLCRDGMVDEAVG-LLVDMESTRFRPTVISYNIIILGFCK 451
+ G+ PD ++Y + + C+ R + L M + + +++ +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIE 482
+ +V P L+
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.2 bits (196), Expect = 7e-16
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 395 MLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLV---DMESTRFRPTVISYNIIILGFCK 451
+ + + C + A LLV R T+ YN ++LG+ +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAME 495
E + VL + + G P+ +Y ++ +G A +E
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 5e-05
Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 3/183 (1%)
Query: 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFF-QERKSNKAVRVMEILEKY 101
++ R G F E +Y + + G PD++ ++ Q++ + R +E + +
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 102 G-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESA 160
G + L+S +A ++ +KV P V + ++ + ++ S
Sbjct: 231 GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
Query: 161 FKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220
K+ L C + L + +K E+ +K + Q+ ++L
Sbjct: 291 PKLHLPLKTLQCLFEKQLHMELASRVCVV-SVEKPTLPSKEVKHARKTLKTLRDQWEKAL 349
Query: 221 ESR 223
Sbjct: 350 CRA 352
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 5e-13
Identities = 70/553 (12%), Positives = 143/553 (25%), Gaps = 176/553 (31%)
Query: 29 HLLSFDVKETQ--FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQER 86
H + F+ E Q + ++ A + ++ M + ++ + I +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS------ILSKEEIDHIIMSK 58
Query: 87 -KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYN 145
+ +R+ L E + + N L + + + R S Y
Sbjct: 59 DAVSGTLRLFWTLLSKQEE---MVQKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRMYI 113
Query: 146 IMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC 205
+ D+L DN Y + L+ + ++L +
Sbjct: 114 ----------------EQRDRLYNDN--QVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVL 154
Query: 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV 265
G++G GK
Sbjct: 155 IDGVLG------------------------------SGK--------------------- 163
Query: 266 TYSILISSLCRDGKTEDAVDV----LRAAKEKGLTPDA---------YSYDPLISAYCKD 312
+ + +C K + +D L +P+ Y DP ++
Sbjct: 164 --TWVALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 313 G-----RLDLAIEFLDYMISDGCLP------DIVNYNTILAAFCKNGNADQALEIFEKLS 361
R+ L ++ V AF
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----------------- 262
Query: 362 DVGCPPNV-SSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL-CRDGM 419
++ C + + + + L ++ +L + S + PDE + L+ L CR
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISL----DHHSMTLTPDE-VKSLLLKYLDCRPQD 317
Query: 420 V-DEAVG---LLVDM--ESTRFRPTVISY----NIIILGFCKTRRINESIEVLA------ 463
+ E + + + ES R N L T I S+ VL
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL----TTIIESSLNVLEPAEYRK 373
Query: 464 -----AMFEKGCKPNETTYVLLIEGIGYGGW----RAEAMELANALVSMHAISRDTFKRL 514
++F L+ W +++ M + N L + +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLI--------WFDVIKSDVMVVVNKLHKYSLVEKQ---PK 422
Query: 515 NRTFPLLDVYKEI 527
T + +Y E+
Sbjct: 423 ESTISIPSIYLEL 435
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 5e-12
Identities = 41/215 (19%), Positives = 70/215 (32%), Gaps = 14/215 (6%)
Query: 214 FQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISS 273
+ V P++ + M L + + + + +SR ++ T+ ++ +S
Sbjct: 50 YGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAAS 109
Query: 274 -LCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP 332
D + A+ L L A + K RLDLA + L M
Sbjct: 110 IYFYDQNPDAALRTLHQGDS--LECMAM----TVQILLKLDRLDLARKELKKMQD--QDE 161
Query: 333 DIVNYNTILAAFC---KNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRAL 389
D A A IF++++D C P + N + + G A
Sbjct: 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAE 220
Query: 390 GMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAV 424
G++ E L K E N L+ G E
Sbjct: 221 GVLQEALDKDSGHPETLIN-LVVLSQHLGKPPEVT 254
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 3e-10
Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 38/270 (14%)
Query: 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQER---KSNKAVRVMEILEK 100
+K +F G + + + + + + P+ + + F R K V++ ++
Sbjct: 6 VKNAFYIGSYQQCINEAQRVKPSS--PER----DVERDVFLYRAYLAQRKYGVVLDEIKP 59
Query: 101 YGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS-LCSRGMIES 159
P++ A ++ + LDR SR T+ +M S ++
Sbjct: 60 SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDA 119
Query: 160 AFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM----------------- 202
A + Q C + +Q + + D A K L +M
Sbjct: 120 ALRTLHQGDSLEC------MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWV 173
Query: 203 -GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE 261
+ A+ + + + C P ++ N + G+WE E ++ E + +
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KD 230
Query: 262 P-NVVTYSILISSLCRDGKTEDAVDVLRAA 290
+ T L+ GK + + +
Sbjct: 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 34/192 (17%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 238 TLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLT 296
G +E E+ ++ EP+ +L S + + + + A +
Sbjct: 8 REYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QN 63
Query: 297 PD-AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL-PDIVN-YNTILAAFCKNGNADQA 353
P A +Y L + Y + G+L AIE + + L PD ++ Y + AA G+ + A
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALR---LKPDFIDGYINLAAALVAAGDMEGA 120
Query: 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD-EITYNSLIS 412
++ + P + + + L + G A + + +P+ + +++L
Sbjct: 121 VQAYVSALQY-NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWSNLGC 177
Query: 413 CLCRDGMVDEAV 424
G + A+
Sbjct: 178 VFNAQGEIWLAI 189
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 65/336 (19%), Positives = 127/336 (37%), Gaps = 44/336 (13%)
Query: 105 DVFAYNALISGFCKANQIELANKVLDR-LRSRGFSPDVV-TYNIMIGSLCSRGMIESAFK 162
AY+ L + + + Q++ A + LR + PD + Y + +L + G +E A +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 163 VFDQLLRDNCKPT-VITYTILIQATMLEGQTDKAMKLLDE--------------MGMC-- 205
+ L+ P + L G+ ++A + +G
Sbjct: 123 AYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 206 KKGMVGQAFQ-FVRSLESRGCQPD-VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN 263
+G + A F +++ P+ + +Y L L ++ +S L PN
Sbjct: 181 AQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPN 235
Query: 264 -VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPD-AYSYDPLISAYCKDGRLDLAIEF 321
V + L G + A+D R A E L P +Y L +A + G + A +
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDC 293
Query: 322 LDYMISDGCL-PDIVN-YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSAL 379
+ + L P + N + + GN ++A+ ++ K +V P ++++ + S L
Sbjct: 294 YNTALR---LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVL 349
Query: 380 WSSGDKIRALGMISEMLSKGIEPD-EITYNSLISCL 414
G AL E + I P Y+++ + L
Sbjct: 350 QQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 52/463 (11%), Positives = 133/463 (28%), Gaps = 68/463 (14%)
Query: 9 NPKSNERVRVSSSAETRPNTHLLSFD--VKETQFMKLIKRSFRAGKFDESLYFIESMVAN 66
+P + S+ + + D +E + ++ + + E ++
Sbjct: 54 SPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD- 112
Query: 67 GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL-------------- 112
+ L + + +A ++ + Y Y A
Sbjct: 113 -ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALN 171
Query: 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC 172
+ G + + N ++ G + + + + A + + + L
Sbjct: 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--V 229
Query: 173 KPT-VITYTILIQATMLEGQTDKA-----------------MKLLDEMGMCK---KGMVG 211
+ L+ +L + ++ L + + K + +
Sbjct: 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289
Query: 212 QAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSIL 270
+A ++ S+ D+ TL ++ + + T+++ ++P + Y +
Sbjct: 290 RAEDYLSSINGLEKSSDL--LLCKADTLFVRSRFIDVLAITTKILE--IDPYNLDVYPLH 345
Query: 271 ISSLCRDGKTEDAVDVLRAAKEKGLTPD-AYSYDPLISAYCKDGRLDLAIEFLDYMIS-D 328
++SL G+ + + P+ A ++ + Y ++ A + + D
Sbjct: 346 LASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403
Query: 329 GCLPDIVNYNTILA-AFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIR 387
P A +F G DQA+ + + + Y + G +
Sbjct: 404 ---PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFL-------GMQHM 452
Query: 388 ALGMISE---MLSKGIE--P-DEITYNSLISCLCRDGMVDEAV 424
LG I L D + N L + A+
Sbjct: 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI 495
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 39/336 (11%), Positives = 107/336 (31%), Gaps = 60/336 (17%)
Query: 109 YNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLL 168
Y ++ +++ A L + S D+ +L R + ++L
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL--LLCKADTLFVRSRFIDVLAITTKIL 332
Query: 169 RDNCKPT-VITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP 227
+ P + Y + + + G+ +K + +++ ++ P
Sbjct: 333 EID--PYNLDVYPLHLASLHESGEKNKLYLISNDL-----------------VDR---HP 370
Query: 228 D-VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISSLCRDGKTEDAVD 285
+ +++ + L + K E + ++ + ++P + S +G+ + A+
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQAIS 428
Query: 286 VLRAAKEKGLTPDAYSYDPLIS---AYCKDGRLDLAIEFLD--YMISDGCLPDIVNYNTI 340
A L ++ P + + + G + LA E+L Y + D + N +
Sbjct: 429 AYTTAAR--LFQG--THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---DPLLLNEL 481
Query: 341 LAAFCKNGNADQALEIFEK------LSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISE 394
+ A+ F+ + P +++ + A R L M
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY-------RKLKMYDA 534
Query: 395 MLS-----KGIEPDEI-TYNSLISCLCRDGMVDEAV 424
+ + ++ + ++ + A+
Sbjct: 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 34/313 (10%), Positives = 87/313 (27%), Gaps = 42/313 (13%)
Query: 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135
+ K E + +A + + + ++ + ++
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEK-SSDLLLCKADTLFVRSRFIDVLAITTKILEI 334
Query: 136 GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT-VITYTILIQATMLEGQTDK 194
++ Y + + SL G + + + L+ + P +T+ + + + +
Sbjct: 335 -DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISE 391
Query: 195 AMKLLDE--------------MGMC--KKGMVGQAFQ-FVRSLESRGCQPD-VISYNMLL 236
A + + +G QA + + + Y L
Sbjct: 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR---LFQGTHLPYLFLG 448
Query: 237 RTLLNMGKWEEGEKLMTEMISRGLEP-NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL 295
+ +G + + + L + + + L + A++ + A L
Sbjct: 449 MQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL--L 504
Query: 296 TPDAYSYDP--------LISAYCKDGRLDLAIEFLDYMISDGCLPDIVN-YNTILAAFCK 346
S + L AY K D AI+ L+ + + N + I +
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLH 562
Query: 347 NGNADQALEIFEK 359
A+ +
Sbjct: 563 KKIPGLAITHLHE 575
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 8e-07
Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 13/204 (6%)
Query: 224 GCQPD-VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISSLCRDGKTE 281
G P S N L G EE +L + + + P +S L S L + GK +
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQ 60
Query: 282 DAVDVLRAAKEKGLTPD-AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTI 340
+A+ + A ++P A +Y + + + + A++ I P + ++
Sbjct: 61 EALMHYKEAIR--ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSN 116
Query: 341 LAAFCKN-GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKG 399
LA+ K+ GN +A+ + + P +Y + L D + +++S
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS-- 173
Query: 400 IEPDEITYNSLISCLCRDGMVDEA 423
I D++ N L S M+
Sbjct: 174 IVADQLEKNRLPSVHPHHSMLYPL 197
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 23/155 (14%)
Query: 227 PDV-ISYNMLLRTLLNMGKWEEGEKL------MTEMISRGLE-PNV-VTYSILISSLCRD 277
PDV N L N GK+EE E + + G + PNV T + L S +
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK-LGPDDPNVAKTKNNLASCYLKQ 208
Query: 278 GKTEDAVD----VLRAAKEKGLTPD----AYSYDPLISAYCKDGRLDLAIEFLDYMISDG 329
GK + A +L A E+ + G+ F +Y
Sbjct: 209 GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268
Query: 330 CL----PDIVN-YNTILAAFCKNGNADQALEIFEK 359
P + + A + + G + A + E
Sbjct: 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 51/246 (20%)
Query: 227 PDVI-SYNMLLRTLLNMGKWEEGEKL------MTEMISRGLE-PNV-VTYSILISSLCRD 277
P + + + L+ + G++E L E S G + P+V +IL
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQ 82
Query: 278 GKTEDAVDVLR---AAKEKGLTPD----AYSYDPLISAYCKDGRLDLAIEF----LDYMI 326
K +DA ++L A +EK L D A + + L Y K G+ A L+ I
Sbjct: 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE--I 140
Query: 327 SDGCL----PDIVN-YNTILAAFCKN-GNAD-------QALEIFEKLSDVGCP--PNV-S 370
+ L PD+ N LA C+N G + +ALEI++ +G P PNV
Sbjct: 141 REKVLGKDHPDVAKQLNN-LALLCQNQGKYEEVEYYYQRALEIYQTK--LG-PDDPNVAK 196
Query: 371 SYNTMFSALWSSGDKIRALGMISEMLSKGIE-------PD-EITYNSLISCLCRDGMVDE 422
+ N + S G +A + E+L++ E + + + G +
Sbjct: 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256
Query: 423 AVGLLV 428
Sbjct: 257 GTSFGE 262
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 42/297 (14%), Positives = 77/297 (25%), Gaps = 61/297 (20%)
Query: 89 NKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA----NKVLDRLRSRGFSPDVVTY 144
+ + + + E A N + A + ++ P +Y
Sbjct: 226 HSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN------LHPTPNSY 279
Query: 145 NIMIGSLCSRGMIESAFKVFDQLLRDNCKPT-VITYTILIQATMLEGQTDKAMKLLDEMG 203
+ +L + + FK F + + P TY Q + A +
Sbjct: 280 IFLALTLADKENSQEFFKFFQKAVD--LNPEYPPTYYHRGQMYFILQDYKNAKEDFQ--- 334
Query: 204 MCKKGMVGQAFQFVRSLESRGCQPD-VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262
++ P+ V Y L L GK+ E E E P
Sbjct: 335 --------------KAQS---LNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFP 375
Query: 263 NVV-TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPD---AYS--------------YDP 304
+ + L G + A+ AK L +
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKR--LEEVQEKIHVGIGPLIGKATILARQSS 433
Query: 305 LISAYCKDGRLDLAIEFLDYMIS-DGCLPDIVN-YNTILAAFCKNGNADQALEIFEK 359
+ + + AI+ L D P + + D+A+E+FE
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELD---PRSEQAKIGLAQLKLQMEKIDEAIELFED 487
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 39/307 (12%), Positives = 87/307 (28%), Gaps = 39/307 (12%)
Query: 77 KLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ------IELANKVLD 130
+ K + + + +E +K + Y+ G + +Q I +
Sbjct: 70 EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129
Query: 131 RLRSRGFSPDVVTYNIMIGSLCSR--------GMIESAFKVFDQLLRDNCKPTVITYTIL 182
L + ++ + I A ++ + + T+ + ++
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR-TIQSLFVI 188
Query: 183 IQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV-ISYNMLLRTLLN 241
DKA+ L+ A + + + IS + +
Sbjct: 189 AGNYDDFKHYDKALPHLE-----------AALELAMDI---QNDRFIAISLLNIANSYDR 234
Query: 242 MGKWEEGEKLMTE--MISRGLEPN--VVTYSILISSLCRDGKTEDAVDV----LRAAKEK 293
G + + + +SR P+ L +LC+ G+T+ A L +
Sbjct: 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294
Query: 294 GLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILA-AFCKNGNADQ 352
+ L + Y + + L Y I A F + + +Q
Sbjct: 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQ 354
Query: 353 ALEIFEK 359
A + K
Sbjct: 355 AAAFYRK 361
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 18/210 (8%)
Query: 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV-TYSILISSLCRDGKTEDAV 284
P V SY + + + E + + L+ N Y + A
Sbjct: 267 FPRVNSYIYMALIMADRNDSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFILQNYDQAG 324
Query: 285 DVLRAAKEKGLTPD-AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVN-YNTILA 342
AKE L P+ + Y L ++ + D P+ N
Sbjct: 325 KDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAE 380
Query: 343 AFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIR--ALGMISE---MLS 397
+ D+AL+ ++ ++ Y + + + R + E +L
Sbjct: 381 ILTDKNDFDKALKQYDLAIEL-ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439
Query: 398 KGIE--PD-EITYNSLISCLCRDGMVDEAV 424
K + P E L + +DEA+
Sbjct: 440 KASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 52/357 (14%), Positives = 93/357 (26%), Gaps = 65/357 (18%)
Query: 24 TRPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFF 83
T + F E F + + + L + TK + F
Sbjct: 162 TSMASFFGIFK-PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220
Query: 84 QERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA----NKVLDRLRSRGFSP 139
++ N ++ EK + N A K ++ P
Sbjct: 221 EQLDKNN--EDEKLKEKLAI----SLEHTGIFKFLKNDPLGAHEDIKKAIE------LFP 268
Query: 140 DVVTYNIMIGSLCSRGMIESAFKVFDQLL---RDNCKPTVITYTILIQATMLEGQTDKAM 196
V +Y M + R + FD+ L +N Y Q + D+A
Sbjct: 269 RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS----VYYHRGQMNFILQNYDQAG 324
Query: 197 KLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD-VISYNMLLRTLLNMGKWEEGEKLMTEM 255
K D ++ E P+ + Y L K+++ E L +E
Sbjct: 325 KDFD-----------------KAKE---LDPENIFPYIQLACLAYRENKFDDCETLFSEA 364
Query: 256 ISRGLEPNVV-TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPD----------AYSYDP 304
P + L + A+ A E L
Sbjct: 365 KR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE--LENKLDGIYVGIAPLVGKAT 420
Query: 305 LISAYCKDGRLDLAIEFLDYMIS-DGCLPDIVN-YNTILAAFCKNGNADQALEIFEK 359
L++ A L+ D P + + + D+A+ +FE+
Sbjct: 421 LLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 26/168 (15%), Positives = 48/168 (28%), Gaps = 10/168 (5%)
Query: 260 LEPN-VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLA 318
L+ ++ A + ++ A E L P SY +
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE--LFPRVNSYIYMALIMADRNDSTEY 289
Query: 319 IEFLDYMISDGCLPDIVN-YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377
+ D + + + Y N DQA + F+K ++ P N+ Y +
Sbjct: 290 YNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPENIFPYIQLAC 346
Query: 378 ALWSSGDKIRALGMISEMLSKGIEPDEI-TYNSLISCLCRDGMVDEAV 424
+ + SE P+ N L D+A+
Sbjct: 347 LAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKAL 392
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 278 GKTEDAVDVLRAAKEKGLTPDAY--SYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV 335
G AV A GL Y L S + G A L + P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQ 61
Query: 336 NYNTILAAFCKN-GNADQALEIFEK-LSDVGCPPNVSSYN 373
A N G +Q +E+ K +++ + SY
Sbjct: 62 ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 34/274 (12%), Positives = 80/274 (29%), Gaps = 48/274 (17%)
Query: 162 KVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLE 221
KVF + N + +L L+GQ + A++ L +A + ++
Sbjct: 37 KVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLR-----------KAEELIQQEH 85
Query: 222 SRGCQP-DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKT 280
+ + ++++ +MG+ + + Y + +C +
Sbjct: 86 ADQAEIRSLVTWGNYAWVYYHMGRLSDVQI----------------YVDKVKHVCEKFSS 129
Query: 281 EDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV----N 336
++ E+G T C + + A + + P
Sbjct: 130 PYRIESPELDCEEGWT----------RLKCGGNQNERAKVCFEKALEKK--PKNPEFTSG 177
Query: 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396
+ A++ + + P N + L ++ G +++
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLV 236
Query: 397 SKGIE--PDEI-TYNSLISCLCRDGMVDEAVGLL 427
+ +E P S R D+A+ LL
Sbjct: 237 EEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 41/239 (17%)
Query: 227 PDV-ISYNMLLRTLLNMGKWEEGEKL------MTEMISRGLE-PNV-VTYSILISSLCRD 277
PDV N+L + K++E L + E G + P V T + L +
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT-LGKDHPAVAATLNNLAVLYGKR 98
Query: 278 GKTEDAVDVLR---AAKEKGLTPD----AYSYDPLISAYCKDGRLDLAIEF----LDYMI 326
GK ++A + + +EK L A + L G+ + + L+ I
Sbjct: 99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE--I 156
Query: 327 SDGCL----PDI-VNYNTILAAFCKNGNADQALEIFEK-LSDV-----GC--PPNVSSYN 373
L P++ N + + + K G A ++++ L+ G N +
Sbjct: 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWM 216
Query: 374 TMFSALWSSGDKIRALGMISEMLSKGIEPDE-----ITYNSLISCLCRDGMVDEAVGLL 427
S + + + T SL + R G ++ A L
Sbjct: 217 HAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 8e-04
Identities = 29/206 (14%), Positives = 57/206 (27%), Gaps = 41/206 (19%)
Query: 239 LLNMGKWEEGEKLMTEMISRGLEPN----VVTYSILISSLCRDGKTEDAVDVLRAA---- 290
+N G +E E+L + +V S+L L G+ ++ +++
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 291 KEKGLTPD-AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGN 349
++ + +S G L A E +
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQE-------------------------- 117
Query: 350 ADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS--KGIEPDE--I 405
+A ++ + P + LW+ A + +P +
Sbjct: 118 --KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175
Query: 406 TYNSLISCLCRDGMVDEAVGLLVDME 431
LI C G +D A L +E
Sbjct: 176 CLAMLIQCSLARGDLDNARSQLNRLE 201
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 534 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.87 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.8 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.79 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.79 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.78 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.74 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.73 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.7 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.67 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.67 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.62 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.61 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.58 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.58 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.54 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.52 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.48 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.47 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.46 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.41 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.38 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.37 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.35 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.32 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.31 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.31 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.31 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.29 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.29 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.28 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.28 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.26 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.26 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.25 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.25 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.24 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.21 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.21 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.2 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.2 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.19 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.18 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.18 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.16 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.16 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.16 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.12 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.1 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.05 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.05 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.02 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.01 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.99 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.99 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.98 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.98 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.97 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.97 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.97 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.96 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.95 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.94 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.94 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.94 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.94 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.93 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.92 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.92 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.91 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.91 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.9 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.9 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.9 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.89 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.87 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.87 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.86 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.84 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.84 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.84 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.84 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.83 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.83 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.81 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.8 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.78 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.78 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.77 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.75 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.72 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.72 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.71 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.7 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.7 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.7 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.69 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.68 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.68 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.66 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.65 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.61 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.57 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.54 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.54 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.53 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.49 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.46 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.44 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.44 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.41 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.4 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.38 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.31 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.22 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.19 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.16 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.15 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.12 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.08 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.08 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.05 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.89 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.88 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.74 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.69 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.52 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.49 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.47 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.44 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.43 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.34 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.24 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.22 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.1 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.08 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.94 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.88 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.85 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.72 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.7 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.32 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.32 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.27 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.23 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.23 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.58 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.18 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.11 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.7 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.68 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.26 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.1 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.02 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.47 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.39 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.07 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.15 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.13 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.8 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.78 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.72 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.53 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.48 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.36 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.93 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.43 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.96 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.93 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.85 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.64 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.99 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.66 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.25 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.29 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.99 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.56 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.31 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.16 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-42 Score=340.52 Aligned_cols=474 Identities=9% Similarity=0.039 Sum_probs=409.0
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
++...|..++..+.+.|++++|+.+|+++... .|+..++..++.++...|++++|..+|+.+... +++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHH
Confidence 35567899999999999999999999999864 567788999999999999999999999988654 778999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhH
Q 047017 115 GFCKANQIELANKVLDRLRSR---------------GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITY 179 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 179 (534)
+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 999999999999999953322 223357899999999999999999999999999875 5566666
Q ss_pred HHHHHHHHhcCCHhHHH------------------HHHHHh--cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047017 180 TILIQATMLEGQTDKAM------------------KLLDEM--GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL 239 (534)
Q Consensus 180 ~~l~~~~~~~g~~~~a~------------------~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (534)
..++..+...+..+.+. .++..+ .+...|++++|..+|+.+... +++..+++.++..+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 66655443322221111 111111 456778888899988887665 57899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHH
Q 047017 240 LNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAI 319 (534)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (534)
.+.|++++|..+|+++.+.+. .+..++..++.++...|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999998753 378899999999999999999999999998764 457889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 320 EFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKG 399 (534)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 399 (534)
.+|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998864 5578899999999999999999999999999875 7788999999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047017 400 IEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST----RFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 400 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
+.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|...|++++|.++++++++.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 457889999999999999999999999999765 55777 6799999999999999999999999999976 348
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcch
Q 047017 474 ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
..+|..++.+|...|++++|.++++++++.+|.++.++..++++|..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999998864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-42 Score=340.23 Aligned_cols=473 Identities=10% Similarity=-0.021 Sum_probs=392.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELAN 126 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 126 (534)
....|.+..+...+..+. .++...|+.++..+.+.|++++|..+|+.+....| +..++..++.+|.+.|++++|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC-CchHHHHHHHHHHHcCcHHHHH
Confidence 344556666666654432 35788899999999999999999999999986644 6688899999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHhcCC
Q 047017 127 KVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD---------------NCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~ 191 (534)
.+|+++... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999998654 678999999999999999999999999953321 223457899999999999999
Q ss_pred HhHHHHHHHHhcccccCChHHHHHH-------------------HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 192 TDKAMKLLDEMGMCKKGMVGQAFQF-------------------VRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~a~~~-------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
+++|.+.|+++.............+ +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 216 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999833222222111111 222222222233344566677788899999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047017 253 TEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP 332 (534)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (534)
+++.+. +++..++..++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 999876 5789999999999999999999999999999875 3477889999999999999999999999998764 56
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLIS 412 (534)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 412 (534)
+..++..++.+|.+.|++++|.++|+++.+.. |.+..+|..++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 78899999999999999999999999998864 6778899999999999999999999999999863 457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHc
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK----GCKPN--ETTYVLLIEGIGY 486 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~ 486 (534)
+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999998763 347889999999999999999999999999886 66777 7899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 487 GGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 487 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.|++++|.++++++++.+|.++.++..++.+|...|+|++|.+.+.+
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=243.18 Aligned_cols=363 Identities=16% Similarity=0.111 Sum_probs=210.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++.+.+..|.+..+|..++.++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3455667777777777777776654 455666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
++|.+.|+++.+.. +.+...|..++.++...|++++|.+.|+++.+.+ |.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776652 2234566777777777777777777777776654 444555666666666666666666666554
Q ss_pred cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH
Q 047017 203 GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTED 282 (534)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (534)
.... +.+..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++
T Consensus 162 ------------------l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 162 ------------------IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp ------------------HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTH
T ss_pred ------------------HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHH
Confidence 2221 22445566666666666666666666666665432 234455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 283 AVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
|...++++.+.. +.+..++..++.++...|++++|...++++.+.+ +.+..++..++..+.+.|++++|+..|+++.+
T Consensus 222 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 222 AVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555442 1234445555555555555555555555555442 22344455555555555555555555555544
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 363 VGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 432 (534)
.. |.+..++..++..+...|++++|...++++.+. .+.+..++..++.++.+.|++++|...++++.+
T Consensus 300 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 42 444444444555555555555555555444443 122334444444444444444444444444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-30 Score=242.42 Aligned_cols=382 Identities=14% Similarity=0.081 Sum_probs=242.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE 158 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 158 (534)
+..+.+.|++++|...++.+.+..|.+..++..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 4455566667777766666666666666666666666666666666666666665542 334556666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 047017 159 SAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRT 238 (534)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (534)
+|...|+++.+.. |.+..++..++.++...|++++|.+.|+++ .... +.+...+..+...
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------l~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSA------------------LQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH------------------HHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhC-CCcHHHHHHHHHH
Confidence 6666666666543 334445555555555555555555555543 2211 1123334444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHH
Q 047017 239 LLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLA 318 (534)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 318 (534)
+...|++++|...|+++. +.. +.+..++..++..+...|++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al-----------------------------------~~~-p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAI-----------------------------------ETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHTTSCHHHHHHHHHHHH-----------------------------------HHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHH-----------------------------------HhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 444455555555554444 432 12334455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 319 IEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
...|+++.+.+ +.+...+..+...+...|++++|+..++++.... |.+..++..++.++...|++++|...++++.+.
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555542 3344556666666666666666666666666553 445666666777777777777777777777664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047017 399 GIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYV 478 (534)
Q Consensus 399 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 478 (534)
+ +.+..++..++.++.+.|++++|...++++.+.. +.+..++..++..+...|++++|...++++++.. +.+..++.
T Consensus 267 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 343 (388)
T 1w3b_A 267 Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHS 343 (388)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 2 2345667777777777788888888877777652 4466777788888888888888888888887753 33577788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.++.++.+.|++++|...++++++..|..+.++..++.++...|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 88888888888888888888888888888888888888776543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-28 Score=236.06 Aligned_cols=459 Identities=11% Similarity=-0.002 Sum_probs=340.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+......+.+.|++++|+..|+++++.+ |+..++..++.++...|++++|...++.+.+.+|.+..++..++.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3467788889999999999999999999875 58999999999999999999999999999999899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCHh
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE---GQTD 193 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~ 193 (534)
...|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-....... ....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999998875 3344444445444444333333333332222221111111111000000000 1111
Q ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC-----
Q 047017 194 KAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLN---MGKWEEGEKLMTEMIS-----RGL----- 260 (534)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~----- 260 (534)
.....+.... ..... .....+.+...+......+.. .|++++|...++++.. ...
T Consensus 163 ~~~~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T 2gw1_A 163 SMASFFGIFK--PELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230 (514)
T ss_dssp HHHHHHTTSC--CCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHHHHHhhcC--HHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence 1111111000 00000 000002234455555555554 8999999999999987 311
Q ss_pred ---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047017 261 ---EPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNY 337 (534)
Q Consensus 261 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (534)
+.+..++..++..+...|++++|...++.+.+.... ...+..++.++...|++++|...++.+.... +.+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHH
Confidence 123557788889999999999999999999987533 7788889999999999999999999998874 5567889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047017 338 NTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRD 417 (534)
Q Consensus 338 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 417 (534)
..++..+...|++++|+..++++.+.. |.+...+..++..+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHC
Confidence 999999999999999999999998875 6678889999999999999999999999998753 34567888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047017 418 GMVDEAVGLLVDMESTRFR-PT----VISYNIIILGFCK---TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGW 489 (534)
Q Consensus 418 g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 489 (534)
|++++|...++++.+.... ++ ...+..++.++.. .|++++|...++++++..+ .+..++..++.++...|+
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcC
Confidence 9999999999998764211 11 3388899999999 9999999999999998753 367888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 490 RAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 490 ~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
+++|...++++++..|.++..+..+..
T Consensus 465 ~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 465 IDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999988776643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-26 Score=224.29 Aligned_cols=443 Identities=13% Similarity=0.059 Sum_probs=325.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+.+.|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+.+...+|.+..++..++.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567888999999999999999999999876 678899999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHhH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC--KPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
...|++++|.+.|+.+ .. .|+. ....+..+...+....|...++.+..... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 9999999999999743 33 2222 22223445555666889999998875420 0011111233344555666665
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHH--------HhcCCHHHHHHHHHHHHHCCCCCC--
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVI-SYNMLLRTL--------LNMGKWEEGEKLMTEMISRGLEPN-- 263 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~-- 263 (534)
+...+... ....+... ....+...+ ...|++++|..+++.+.+.... +
T Consensus 179 ~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~ 237 (537)
T 3fp2_A 179 EVSSVNTS--------------------SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDP 237 (537)
T ss_dssp HHHTSCCC--------------------CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHH
T ss_pred HHHHHhhc--------------------cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cch
Confidence 55444332 01111111 112222221 1235788888899888876322 2
Q ss_pred -----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 264 -----VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYN 338 (534)
Q Consensus 264 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (534)
..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++.+.. +.+..++.
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 314 (537)
T 3fp2_A 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYY 314 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHH
Confidence 2246667778888899999999999988863 457778888888889999999999999988864 45678888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047017 339 TILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDG 418 (534)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 418 (534)
.++..+...|++++|+..++++.+.. |.+...+..++.++...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 315 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 315 HRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 89999999999999999999998875 6677888889999999999999999999988763 445678888889999999
Q ss_pred CHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 419 MVDEAVGLLVDMESTRF-----RPTVISYNIIILGFCKT----------RRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 419 ~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
++++|...++++.+... ......+.....++... |++++|...++++++..+ .+..++..++.+
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 471 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQL 471 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 99999999988865421 11122244555677777 999999999999988753 367888899999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 484 IGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
+...|++++|.+.|+++++..|..++...
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999988876654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-27 Score=229.92 Aligned_cols=437 Identities=11% Similarity=0.002 Sum_probs=328.5
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS 150 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (534)
....+...+..+...|++++|+..|+.+...+| +..++..++.++.+.|++++|.+.++++.+.+ +.+..++..++.+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 356678888999999999999999999999875 89999999999999999999999999998874 3467889999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHh
Q 047017 151 LCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVI 230 (534)
Q Consensus 151 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 230 (534)
+...|++++|...|+++...+ +++......++..+........+.+.+..+ ...+..|+..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~~~~~~ 143 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDI------------------DTATATPTEL 143 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhhhhc
Confidence 999999999999999999886 455555555554444333222222222111 0000000000
Q ss_pred hHHHHH---HHHHhcCCHHHHHHHHHHHHHC------CCCCChhhHHHHHHHHHh---CCChhHHHHHHHHHHH-----C
Q 047017 231 SYNMLL---RTLLNMGKWEEGEKLMTEMISR------GLEPNVVTYSILISSLCR---DGKTEDAVDVLRAAKE-----K 293 (534)
Q Consensus 231 ~~~~l~---~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~ 293 (534)
.+.... ...........+...+...... ..+.+...+......+.. .|++++|...++++.+ .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 223 (514)
T 2gw1_A 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh
Confidence 000000 0000011111111111110000 001124445555555554 8999999999999988 3
Q ss_pred CC--------CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 294 GL--------TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 294 ~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
.. +.+...+..++..+...|++++|...++++.+.. |+...+..++.++...|++++|...++++....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 300 (514)
T 2gw1_A 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD- 300 (514)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-
T ss_pred ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-
Confidence 11 1234567788899999999999999999999875 338888999999999999999999999999875
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
|.+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 378 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFF 378 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHH
Confidence 6788899999999999999999999999999863 3356788889999999999999999999998763 3367788899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKP-N----ETTYVLLIEGIGY---GGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
+..+...|++++|...++++++..... + ...+..++.++.. .|++++|...++++++..|..+.++..++.+
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 999999999999999999998753221 1 3488899999999 9999999999999999999999999999999
Q ss_pred cchHHHHHHhhhhhcc
Q 047017 518 FPLLDVYKEISHLATK 533 (534)
Q Consensus 518 ~~~~~~~~~~~~~~~k 533 (534)
|...|++++|...+.+
T Consensus 459 ~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 9999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=229.65 Aligned_cols=210 Identities=15% Similarity=0.233 Sum_probs=101.7
Q ss_pred HHHHHHHHCCCCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 250 KLMTEMISRGLEPNVV-TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD 328 (534)
Q Consensus 250 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (534)
.+.+.+.+.+..+.+. .++.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.+....+
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---------- 80 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---------- 80 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------
Confidence 3344444444333322 34555556666666666666666666656666666666666555544331000
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 329 GCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYN 408 (534)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (534)
...+..+.|.++|++|...|+.||..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 0011134455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.|..|+..||..++..+.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555544443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=226.97 Aligned_cols=206 Identities=13% Similarity=0.214 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC---------h
Q 047017 211 GQAFQFVRSLESRGCQPDV-ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGK---------T 280 (534)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 280 (534)
..+..+.+.+.+.+..+.+ ..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|+..+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445556666666665554 45888999999999999999999999999999999999999999987765 4
Q ss_pred hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 047017 281 EDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKL 360 (534)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 360 (534)
+.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 361 SDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR 416 (534)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 416 (534)
.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..|..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777776777777777766666654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-24 Score=208.99 Aligned_cols=316 Identities=13% Similarity=0.132 Sum_probs=162.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMI 148 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 148 (534)
+.+...+..++..+...|++++|+.+|+.+....|.+..++..++.++...|++++|...|+++.+.+ +.+...+..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 44566666667777777777777777777766666667777777777777777777777777766653 23456666677
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCC
Q 047017 149 GSLCSRGMIESAFKVFDQLLRDNCKPTV---ITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 225 (534)
.+|...|++++|...|+++.+.. +.+. ..+..++..+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~----------------------------------- 145 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR----------------------------------- 145 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH-----------------------------------
Confidence 77777777777777777776653 3333 44444443321111
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
+..+...+...|++++|+..|+.+.... +.+...+..++.+|...|++++|...++++.+.. +.+...+..+
T Consensus 146 ------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 217 (450)
T 2y4t_A 146 ------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKI 217 (450)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 1122223334444444444444444332 1233444444444444444444444444444331 1233444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH------------HHHHHHhCCCHHHHHHHHHHHhhCCCCCC----H
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT------------ILAAFCKNGNADQALEIFEKLSDVGCPPN----V 369 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 369 (534)
+.+|...|++++|...++++.... +.+...+.. ++..+...|++++|+..|+++.+.. |.+ .
T Consensus 218 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 295 (450)
T 2y4t_A 218 STLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTV 295 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHH
Confidence 444444444444444444444331 112222222 2445555555555555555555432 222 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 370 SSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 432 (534)
..+..++.++.+.|++++|+..++++.+.. +.+...+..++.+|...|++++|...++++.+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 244445555555555555555555554431 22345555555555555555555555555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-25 Score=210.48 Aligned_cols=315 Identities=13% Similarity=0.113 Sum_probs=238.6
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.+...+..+...+.+.|++++|+.+|+++++.. +.+..++..++.++...|++++|...|+.+.+.+|.+..++..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 356778899999999999999999999999865 6689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-h---hhHHHH------------HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhh
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPD-V---VTYNIM------------IGSLCSRGMIESAFKVFDQLLRDNCKPTVIT 178 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 178 (534)
++.+.|++++|.+.|+++.+. .|+ . ..+..+ ...+...|++++|...|+++.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999987 444 3 555555 444888899999999999988775 667888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 179 YTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 179 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
+..++.+|...|++++|...|+++ ... .+.+..++..++.++...|++++|+..|+++...
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~------------------~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAA------------------SKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHH------------------HHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH------------------HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999998888888876 222 1346778888888999999999999999988876
Q ss_pred CCCCChhhHHHH------------HHHHHhCCChhHHHHHHHHHHHCCCCCC----HhcHHHHHHHHHhcCCHHHHHHHH
Q 047017 259 GLEPNVVTYSIL------------ISSLCRDGKTEDAVDVLRAAKEKGLTPD----AYSYDPLISAYCKDGRLDLAIEFL 322 (534)
Q Consensus 259 ~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 322 (534)
.. .+...+..+ +..+...|++++|...|+.+.+.... + ...+..++.++.+.|++++|...+
T Consensus 241 ~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 DQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 32 233334333 56666667777777777776664211 2 234555666666677777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047017 323 DYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMF 376 (534)
Q Consensus 323 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 376 (534)
+.+.+.. +.+..++..++.+|...|++++|...++++.+.. |.+...+..+.
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 6666542 3355666666666667777777777777666653 44444444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=219.37 Aligned_cols=433 Identities=12% Similarity=0.043 Sum_probs=327.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS 150 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (534)
....+..++..+.+.|++++|+..|+.+...+|.++.++..++.++.+.|++++|.+.++++.+.+ +.+...+..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999999999999998874 4468889999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHh
Q 047017 151 LCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVI 230 (534)
Q Consensus 151 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 230 (534)
+...|++++|...|+. .... |+. ....+..+...+....|...++.+.....+ ......|+
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~------------~~~~~~~~-- 163 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEG------------RGSQVLPS-- 163 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------------------CCCCC--
T ss_pred HHHcCCHHHHHHHHHH-HhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCcc------------ccccccch--
Confidence 9999999999999974 3322 221 112233444455556677766665110000 00111222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHh--------CCChhHHHHHHHHHHHCCCCCCH--
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV-TYSILISSLCR--------DGKTEDAVDVLRAAKEKGLTPDA-- 299 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-- 299 (534)
...+..+....+.+.+...+...... .+... ....+...+.. .|++++|..+++.+.+.... +.
T Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~ 238 (537)
T 3fp2_A 164 --NTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPL 238 (537)
T ss_dssp --HHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHH
T ss_pred --HhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchh
Confidence 23344455566666665554333221 11211 22233322222 24789999999999876422 32
Q ss_pred -----hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 047017 300 -----YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNT 374 (534)
Q Consensus 300 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 374 (534)
..+..+...+...|++++|...++.+.... |+...+..+...+...|++++|+..++++.+.. |.+..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 246667788889999999999999999874 558889999999999999999999999998875 778899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR 454 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 454 (534)
++..+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999863 3356788899999999999999999999998863 3457788999999999999
Q ss_pred hHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 455 INESIEVLAAMFEKGCK-----PNETTYVLLIEGIGYG----------GWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 455 ~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
+++|...++++++..+. .....+......+... |++++|...++++++..|.++.++..++.+|.
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999874311 1223344556777777 99999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhcc
Q 047017 520 LLDVYKEISHLATK 533 (534)
Q Consensus 520 ~~~~~~~~~~~~~k 533 (534)
..|++++|...+.+
T Consensus 474 ~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 474 QMEKIDEAIELFED 487 (537)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 99999999988754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-20 Score=180.07 Aligned_cols=364 Identities=11% Similarity=0.033 Sum_probs=196.7
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh----cCCHHHHHH
Q 047017 56 SLYFIESMVANGCKPDVVMCTKLIKKFFQ----ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK----ANQIELANK 127 (534)
Q Consensus 56 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 127 (534)
++..++...+.+ +..++..+...+.. .+++++|..+|+...+. .++.++..+...|.. .+++++|.+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 345555554433 56666666666666 66677777777666653 345566666666666 666677777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHH
Q 047017 128 VLDRLRSRGFSPDVVTYNIMIGSLCS----RGMIESAFKVFDQLLRDNCKPTVITYTILIQATML----EGQTDKAMKLL 199 (534)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 199 (534)
.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 776666543 45555556666665 566666666666666544 34455555555554 44455444444
Q ss_pred HHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047017 200 DEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLN----MGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC 275 (534)
Q Consensus 200 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (534)
++. .+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.
T Consensus 175 ~~a------------------~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 175 SKA------------------AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYY 230 (490)
T ss_dssp HHH------------------HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHH------------------HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 443 3332 45555555555555 566666666666655543 3444555555554
Q ss_pred h----CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 047017 276 R----DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKN 347 (534)
Q Consensus 276 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (534)
. .+++++|..+|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Confidence 3 555666666665555543 33444445555554 555555555555555442 334444455555544
Q ss_pred -----CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 047017 348 -----GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG---DKIRALGMISEMLSKGIEPDEITYNSLISCLCR--- 416 (534)
Q Consensus 348 -----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 416 (534)
+++++|+.+|++..+.+ +...+..+...|...| ++++|+..+++..+.+ +...+..+...|..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG 378 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 55555555555555543 3344444554444433 4455555555555432 34444455555554
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 047017 417 -DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----TRRINESIEVLAAMFEKG 469 (534)
Q Consensus 417 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 469 (534)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|+++.+.+
T Consensus 379 ~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 455555555555555432 33444445555544 455555555555555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-22 Score=182.65 Aligned_cols=325 Identities=17% Similarity=0.138 Sum_probs=271.7
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 175 TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (534)
++..+..++..+...|++++|...|+++ .... +.+...+..+..++...|++++|...+++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~------------------l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAA------------------VDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3556778888888999999998888876 3332 34678899999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CCHhcHHHH------------HHHHHhcCCHHHHHH
Q 047017 255 MISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLT--PDAYSYDPL------------ISAYCKDGRLDLAIE 320 (534)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~ 320 (534)
+.+.. +.+...+..+...+...|++++|...++.+.+.... .+...+..+ ...+...|++++|..
T Consensus 63 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 63 VIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99874 336788999999999999999999999999986420 234444444 578889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047017 321 FLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI 400 (534)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 400 (534)
.++++.+.. +.+...+..++..+...|++++|...++++.+.. |.+...+..++..+...|++++|...++++.+..
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~- 218 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 218 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 999999874 5678889999999999999999999999999875 7788999999999999999999999999998753
Q ss_pred CCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHH
Q 047017 401 EPDEITYN------------SLISCLCRDGMVDEAVGLLVDMESTRFRPTV----ISYNIIILGFCKTRRINESIEVLAA 464 (534)
Q Consensus 401 ~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 464 (534)
+.+...+. .++..+...|++++|...++++.+.... +. ..+..+..++...|++++|...+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 23333333 2366788999999999999999875322 22 2355678899999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHH
Q 047017 465 MFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVY 524 (534)
Q Consensus 465 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 524 (534)
+++.. +.+..++..++.++...|++++|...++++++..|.++.++..+.+++...++.
T Consensus 298 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 298 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 99975 337889999999999999999999999999999999999999999888776654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-20 Score=179.22 Aligned_cols=379 Identities=11% Similarity=0.032 Sum_probs=297.4
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHH
Q 047017 92 VRVMEILEKYGEPDVFAYNALISGFCK----ANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS----RGMIESAFKV 163 (534)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 163 (534)
...++.... +.++.++..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|.+.
T Consensus 27 ~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 27 LEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 444444443 4577788888888887 788999999999888764 56777788888887 8889999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047017 164 FDQLLRDNCKPTVITYTILIQATML----EGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL 239 (534)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (534)
|++..+.| +...+..|...|.. .+++++|...|++. ...+ ++..+..+...|
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a------------------~~~~---~~~a~~~Lg~~y 157 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLA------------------AEQG---RDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------------------HHTT---CHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------------------HHCC---CHHHHHHHHHHH
Confidence 99888765 55677778888887 78899999998876 3332 566777788888
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 240 LN----MGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR----DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 240 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ ++..+..+...|..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYF 231 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 77 788999999998888764 66777888888877 788999999998888764 56677777777776
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-
Q 047017 312 ----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK----NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS- 382 (534)
Q Consensus 312 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 382 (534)
.+++++|..+|++..+.+ +...+..+...|.. .++.++|+.+|++..+.+ ++..+..+...|...
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence 788899999998888764 55667777777777 788999999999888764 566777788888776
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----
Q 047017 383 ----GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDG---MVDEAVGLLVDMESTRFRPTVISYNIIILGFCK---- 451 (534)
Q Consensus 383 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 451 (534)
+++++|...+++..+.+ +...+..+...|...| ++++|.+.|++..+.+ +...+..+...|..
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 88999999998888864 4556777777777756 7888999998888753 56777888888887
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC---chHHHHHHHhhcch
Q 047017 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGY----GGWRAEAMELANALVSMHAI---SRDTFKRLNRTFPL 520 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 520 (534)
.+++++|...++++.+.+ +...+..+...|.. .+++++|..+|+++.+.++. ++.+...++.++..
T Consensus 380 ~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 788999999999888865 46777788888887 78999999999999998854 67778888877764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-21 Score=181.47 Aligned_cols=328 Identities=13% Similarity=0.095 Sum_probs=202.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+..+...+...|++++|+..|+++++.. +.+..++..++.++...|++++|...++.+....|.+..++..++.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4567778888889999999999999888765 567888888888889999999999999998888888888888889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC----ChhhHHHH------------HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSP----DVVTYNIM------------IGSLCSRGMIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
...|++++|...|+++.+. .| +...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 9999999999999888876 34 33444444 355666666666666666666554 44555666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047017 181 ILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL 260 (534)
Q Consensus 181 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 260 (534)
.++.++...|++++|...++++ ... .+.+...+..+...+...|++++|...++.+.+...
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~------------------~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAA------------------SKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------------------HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 6666666666666666665554 222 123455566666666666666666666666655421
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 047017 261 EPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI----VN 336 (534)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 336 (534)
. +...+..+... . .......++..+...|++++|...++++.+.. +.+. ..
T Consensus 220 ~-~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 274 (359)
T 3ieg_A 220 D-HKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRS 274 (359)
T ss_dssp T-CHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHH
T ss_pred c-chHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHH
Confidence 1 22211111000 0 00011122444555666666666666655542 1122 12
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL 414 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 414 (534)
+..+..++...|++++|+..++++.+.. |.+..++..++.++...|++++|...++++.+.. +.+...+..+..+.
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3345556666666666666666665543 4455666666666666666666666666666542 22344444444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-20 Score=179.08 Aligned_cols=433 Identities=10% Similarity=0.029 Sum_probs=270.3
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047017 61 ESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD 140 (534)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 140 (534)
++.++.. |.+..+|..++.. .+.|++++|..+|+.+....|.+...|..++..+.+.|++++|..+|++++.. .|+
T Consensus 3 e~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC
T ss_pred hhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Confidence 3444433 4456666666653 55666666666666666666666666666666666666666666666666655 345
Q ss_pred hhhHHHHHHHH-HcCCCHHHHHH----HHHHHHhC-CCC-CCHhhHHHHHHHHHh---------cCCHhHHHHHHHHhcc
Q 047017 141 VVTYNIMIGSL-CSRGMIESAFK----VFDQLLRD-NCK-PTVITYTILIQATML---------EGQTDKAMKLLDEMGM 204 (534)
Q Consensus 141 ~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 204 (534)
...|..++... ...|+.++|.+ +|+..+.. |.. ++...|...+..... .|+++.|..+|++...
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 55555555322 23455544443 55554432 222 234455555544433 3455555555555422
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC--------hhhH
Q 047017 205 CKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEM------ISRG---LEPN--------VVTY 267 (534)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~ 267 (534)
.........+..+..+... .+..+...++. ...+++..|..++..+ .+.. ++|+ ...|
T Consensus 159 ~P~~~~~~~~~~~~~~e~~---~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEG---INIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHH---HCHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHh---hchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 1111111111111111100 00001111110 1234566666666552 2211 2333 1344
Q ss_pred HHHHHHHHhC----CCh----hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh-------cCCHH-------HHHHHHHHH
Q 047017 268 SILISSLCRD----GKT----EDAVDVLRAAKEKGLTPDAYSYDPLISAYCK-------DGRLD-------LAIEFLDYM 325 (534)
Q Consensus 268 ~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~ 325 (534)
...+...... ++. ..+..+|+++.... +.++..|...+..+.+ .|+++ +|..++++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 4444332221 232 36778888888763 4467788888887775 68877 899999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047017 326 ISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV-SSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDE 404 (534)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 404 (534)
++.-.+.+...|..++..+.+.|++++|..+|+++.+.. |.+. ..|..++..+.+.|++++|..+|++..+.. +.+.
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~ 390 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH 390 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch
Confidence 863235568889999999999999999999999999863 3343 578888888889999999999999998752 2233
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC--CHHHHHHH
Q 047017 405 ITYNSLISC-LCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGC-KP--NETTYVLL 480 (534)
Q Consensus 405 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l 480 (534)
..+...+.. +...|++++|..+|++..+.. +.+...|..++..+...|+.++|..+|++++..+. .| ....|...
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 333332222 336899999999999988753 33678889999999999999999999999998643 22 25578888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
+......|+.+.+..+++++.+..|.
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 88888899999999999999998874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=178.87 Aligned_cols=293 Identities=11% Similarity=0.002 Sum_probs=255.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
+.+...+..++..+...|++++|+.+++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4566778888999999999999999999999874 3366777788889999999999999999999874 3467788899
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 306 ISAYCKDG-RLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 306 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (534)
...+...| ++++|...++++.... +.+...+..++..+...|++++|+..++++.+.. |.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999874 5567889999999999999999999999998875 6677888889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCChH
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTR--------FRPTVISYNIIILGFCKTRRIN 456 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 456 (534)
+++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+....++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999863 4567889999999999999999999999987631 1334678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc-chHHHH
Q 047017 457 ESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF-PLLDVY 524 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 524 (534)
+|...++++++..+ .+...+..++.++...|++++|.+.++++++..|.++.++..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999998753 36788899999999999999999999999999999999999999988 455543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-20 Score=178.48 Aligned_cols=415 Identities=10% Similarity=0.027 Sum_probs=300.5
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 047017 95 MEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP 174 (534)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 174 (534)
|+...+.+|.+..+|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++... |
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 566777779999999999984 78999999999999999872 4467789999999999999999999999999874 5
Q ss_pred CHhhHHHHHHHH-HhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHH-cCCC-CCHhhHHHHHHHHHh---------c
Q 047017 175 TVITYTILIQAT-MLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES-RGCQ-PDVISYNMLLRTLLN---------M 242 (534)
Q Consensus 175 ~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~ 242 (534)
+...|..++... ...|++++|.+.+..+ |+.... .|.. ++...|...+..... .
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~--------------~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQA--------------YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHH--------------HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHH--------------HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH
Confidence 777777777533 3467777766533322 222222 2333 345667777766554 6
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-------------HhCCChhHHHHHHHHHH------HCC---CCCCH-
Q 047017 243 GKWEEGEKLMTEMISRGLEPNVVTYSILISSL-------------CRDGKTEDAVDVLRAAK------EKG---LTPDA- 299 (534)
Q Consensus 243 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~~- 299 (534)
|+++.|..+|++.+.....+....|....... ...+++..|..++.... +.. ++|+.
T Consensus 144 ~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 88999999999998742111123333322211 12345677777776532 221 23331
Q ss_pred -------hcHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------CCCHH------
Q 047017 300 -------YSYDPLISAYCKD----GRL----DLAIEFLDYMISDGCLPDIVNYNTILAAFCK-------NGNAD------ 351 (534)
Q Consensus 300 -------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~------ 351 (534)
..|...+...... ++. +.+..+|++++... +.++..|..++..+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 2333333222221 232 47788999988863 5578888888888875 78887
Q ss_pred -HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHH
Q 047017 352 -QALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD-E-ITYNSLISCLCRDGMVDEAVGLLV 428 (534)
Q Consensus 352 -~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~ 428 (534)
+|..+|++..+.-.|.+...|..++..+...|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|+
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 89999999987323667889999999999999999999999999985 443 3 578888888889999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 429 DMESTRFRPTVISYNIIILG-FCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
+..+.. +.+...|...+.. +...|++++|..+|+++++..+ .+...|..++..+.+.|+.++|+.+|++++...|.+
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 998752 2233334333322 3368999999999999998743 368899999999999999999999999999988766
Q ss_pred hH----HHHHHHhhcchHHHHHHhhhhhc
Q 047017 508 RD----TFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 508 ~~----~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
+. .|...+......|+.+.+..+..
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 54 77777777777787777776643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-20 Score=172.58 Aligned_cols=271 Identities=12% Similarity=0.071 Sum_probs=160.3
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
..+...+..+...+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++.+....|.+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3455566677777777777777777777776654 445566666667777777777777777777777676777777777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 114 SGFCKAN-QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 114 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
..+...| ++++|.+.|+++.+.. +.+...|..+..++...|++++|...++++.+.. +.+...+..++..|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 7777777777776652 2245666667777777777777777777776654 33445555566666666666
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------CCCh
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL--------EPNV 264 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~ 264 (534)
++|...++++ ... .+.+...+..+...+...|++++|...++++..... +...
T Consensus 176 ~~A~~~~~~a------------------l~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 176 KLAERFFSQA------------------LSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp HHHHHHHHHH------------------HTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred HHHHHHHHHH------------------HHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 6666666554 222 123445556666666666666666666665554310 1123
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMIS 327 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (534)
.++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 344444444445555555555554444432 11333444444444444444444444444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-21 Score=177.12 Aligned_cols=291 Identities=14% Similarity=0.068 Sum_probs=228.6
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCC-C--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC
Q 047017 239 LLNMGKWEEGEK-LMTEMISRGLE-P--NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR 314 (534)
Q Consensus 239 ~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (534)
+...|++++|.. .+++....... | +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888887 77765544211 1 34567888888889999999999999988874 3467788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHH---------------HHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNT---------------MFSAL 379 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 379 (534)
+++|...++++.+.. +.+..++..++.++...|++++|+..++++.... |.+...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999888874 5577888888999999999999999999988764 444433321 13334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 047017 380 WSSGDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINES 458 (534)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 458 (534)
...|++++|...++++.+..... +..++..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998753221 57888999999999999999999999998763 33577899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-----------hHHHHHHHhhcchHHHHHHh
Q 047017 459 IEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS-----------RDTFKRLNRTFPLLDVYKEI 527 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~ 527 (534)
...++++++.. +.+..++..++.++...|++++|...++++++..|.. ..++..++.+|...|+++++
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999999875 3468889999999999999999999999999988877 78999999999999999999
Q ss_pred hhhhccC
Q 047017 528 SHLATKD 534 (534)
Q Consensus 528 ~~~~~k~ 534 (534)
..+..++
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9887764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-18 Score=169.36 Aligned_cols=412 Identities=12% Similarity=0.139 Sum_probs=298.9
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGC--KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
+.+|......+++|...|.+.+|+++++++...+- ..+....+.++.+.++. +..+...+.+..... ....
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------d~~e 1054 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------DAPD 1054 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------cHHH
Confidence 45666777889999999999999999999985421 13445566677666666 455666655555422 2445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++..+...|.+++|..+|++... .....+.++ ...|++++|.++.++. .+..+|..++.++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 78889999999999999999631 222223332 2778899999998865 246788899999999999
Q ss_pred HhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047017 192 TDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILI 271 (534)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 271 (534)
+++|++.|.+. .+...|..++.++.+.|++++|.+.+....+.. +++...+.++
T Consensus 1121 ~kEAIdsYiKA------------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred HHHHHHHHHhc------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 99999998764 367778889999999999999999998877764 3444444588
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 047017 272 SSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNAD 351 (534)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (534)
.+|++.+++++...+. + .++...+..++..|...|++++|..+|..+ ..|..++.++.+.|+++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 8888888887544332 2 335566777889999999999999999875 36888999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 352 QALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
.|++.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...
T Consensus 1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999998877 2568888888899988888888876654 23356667788888999999999999998887
Q ss_pred hCCCCCChhhHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 432 STRFRPTVISYNIIILGFCKT--RRINESIEVLAAMFEKGCKP------NETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
... +-....|+.+..++.+. ++..++.++|..-. +++| +...|..++-.|.+.|+++.|....-.-...
T Consensus 1308 ~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1308 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred ccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 653 33455676666666653 34455555554332 2222 4567888888888999999888433222211
Q ss_pred ------------CCCchHHHHHHHhhcchHH
Q 047017 504 ------------HAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 504 ------------~~~~~~~~~~l~~~~~~~~ 522 (534)
.+.+++.+++.+..|....
T Consensus 1385 a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1385 AWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 4567788887777776544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-18 Score=167.60 Aligned_cols=376 Identities=11% Similarity=-0.027 Sum_probs=224.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C---CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----
Q 047017 105 DVFAYNALISGFCKANQIELANKVLDRLRSR-----G---FSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN----- 171 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 171 (534)
....|+.+...+...|++++|++.|++..+. + -+....+|..+..+|...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456677777777777777777777665432 0 12234567777788888888888888777765421
Q ss_pred --CCCCHhhHHHHHHHHHhc--CCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH---HHhcCC
Q 047017 172 --CKPTVITYTILIQATMLE--GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRT---LLNMGK 244 (534)
Q Consensus 172 --~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~ 244 (534)
......++..+..++... +++++|+..|+++ .... +.++..+..+..+ +...++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ka------------------l~~~-p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA------------------LEKK-PKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH------------------HHHS-TTCHHHHHHHHHHHHHHHHSCC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHH------------------HHhC-CCCHHHHHHHHHHHHHhcCchH
Confidence 012234555555554443 3566666666654 4432 2244455444444 345677
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHH
Q 047017 245 WEEGEKLMTEMISRGLEPNVVTYSILISSLC----RDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIE 320 (534)
Q Consensus 245 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 320 (534)
.++|++.+++.++.. +.+...+..+...+. ..+++++|...+++..... +.+...+..++..|...|++++|..
T Consensus 191 ~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp CCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHH
Confidence 778888888887764 224555555554443 3467788888888887764 3466778888888888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhC-------------------CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047017 321 FLDYMISDGCLPDIVNYNTILAAFCKN-------------------GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS 381 (534)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (534)
.++++.+.. +.+..++..+..+|... +..+.|...++++.+.. |.+..++..+...+..
T Consensus 269 ~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 269 LLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 988888764 44566666666555322 23567777888777764 6677788888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 047017 382 SGDKIRALGMISEMLSKGIEPDE--ITYNSLIS-CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINES 458 (534)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 458 (534)
.|++++|+..|+++++....+.. ..+..+.. .....|++++|+..+++..+. .|+...... ....+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHH
Confidence 99999999999888876433322 12233332 234678889999999888874 444332222 22344
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 047017 459 IEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLN 515 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 515 (534)
..++++.++.+ +.+..++..++.++...|++++|++.|+++++.++..|.+...+|
T Consensus 416 ~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 55666666654 336778888888899999999999999999998888887766554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-19 Score=169.12 Aligned_cols=367 Identities=11% Similarity=0.009 Sum_probs=260.1
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC--------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChH
Q 047017 140 DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD--------NCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVG 211 (534)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 211 (534)
....|+.+..++...|++++|++.|++..+. ..+....+|..++.+|...|++++|...++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka--------- 120 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV--------- 120 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH---------
Confidence 4667899999999999999999999987652 12345678999999999999999999998875
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH---HHhCCChhHHHHH
Q 047017 212 QAFQFVRSLESRGCQPDVISYNMLLRTLLN--MGKWEEGEKLMTEMISRGLEPNVVTYSILISS---LCRDGKTEDAVDV 286 (534)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~ 286 (534)
..+..............++..+..++.. .+++++|+..|++.++..+. ++..+..+..+ +...++.++|++.
T Consensus 121 --~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 121 --KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp --HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred --HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 2222222111112234566666666654 45799999999999987422 45555555444 4456888999999
Q ss_pred HHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 287 LRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
++++.+.+ +.+...+..+...+.. .+++++|...+++..... +.+..++..++..|...|++++|+..++++.+
T Consensus 198 ~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 198 LRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 99988864 3355566656555544 467889999999988874 56778899999999999999999999999988
Q ss_pred CCCCCCHhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 363 VGCPPNVSSYNTMFSALWSS-------------------GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
.. |.+..++..+..+|... +.++.|...+++..+.. +.+...+..+..++...|++++|
T Consensus 276 ~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 276 YI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence 75 66777887777665432 23567777787777653 33456778889999999999999
Q ss_pred HHHHHHHHhCCCCCCh--hhHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 424 VGLLVDMESTRFRPTV--ISYNIIIL-GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
...|++..+....+.. ..+..+.. .....|++++|+..++++++.. |+..... +....+.+++++.
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~ 422 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHH
Confidence 9999999876433322 12233332 2346789999999999998864 3332222 2234567788889
Q ss_pred HHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 501 VSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 501 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
++.+|..+.++..++.+|...|++++|.+.++|
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999998876
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-20 Score=170.20 Aligned_cols=254 Identities=11% Similarity=0.005 Sum_probs=125.7
Q ss_pred cCCHhHHHH-HHHHHHHcCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 047017 85 ERKSNKAVR-VMEILEKYGEPD----VFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIES 159 (534)
Q Consensus 85 ~~~~~~a~~-~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 159 (534)
.|++++|.. .++......+.+ ...+..++..+...|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 665554443222 3456666666666677777777766666652 2345566666666666777777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHH-----
Q 047017 160 AFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNM----- 234 (534)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 234 (534)
|...|+++.+.. +.+..++..++.++...|++++|...++++ ..... .+...+..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------~~~~~-~~~~~~~~~~~~~ 176 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDW------------------LRYTP-AYAHLVTPAEEGA 176 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHTST-TTGGGCC------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCc-CcHHHHHHHHHHh
Confidence 777776666654 455666666666666666666666666654 22211 11111110
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 235 ----------LLRTLLNMGKWEEGEKLMTEMISRGLEP-NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 235 ----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
.+..+...|++++|...++++....... +..++..++..+...|++++|...++++.+.. +.+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 255 (368)
T 1fch_A 177 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWN 255 (368)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 1111224555555555555555442111 24444455555555555555555555544432 22334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 047017 304 PLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLS 361 (534)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 361 (534)
.++..+...|++++|...++++.+.. +.+..++..++.+|...|++++|...|+++.
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444445555555555554444432 2234444444444444444444444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-20 Score=171.01 Aligned_cols=264 Identities=13% Similarity=0.019 Sum_probs=162.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 266 TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFC 345 (534)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (534)
.+..++..+...|++++|...|+++.+.. +.+...+..++.++...|++++|...|+++.+.. +.+..++..++.+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555555555555555555555555542 2244455555555555556666665555555542 334555555566666
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCH----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 047017 346 KNGNADQALEIFEKLSDVGCPPNV----------SSYNTMFSALWSSGDKIRALGMISEMLSKGIE-PDEITYNSLISCL 414 (534)
Q Consensus 346 ~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 414 (534)
..|++++|+..++++.+.. |.+. ..+..+...+...|++++|...++++.+.... ++..++..++.++
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666555432 2122 22233466677777777777777777765211 1466777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
...|++++|...++++.+.. +.+..+|..++.+|...|++++|...++++++..+ .+..++..++.+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHH
Confidence 77788888888877777652 33566777777778888888888888888777642 25677777777888888888888
Q ss_pred HHHHHHHHcCCC------------chHHHHHHHhhcchHHHHHHhhhhhccC
Q 047017 495 ELANALVSMHAI------------SRDTFKRLNRTFPLLDVYKEISHLATKD 534 (534)
Q Consensus 495 ~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~~~~~~k~ 534 (534)
..++++++..|. ....+..++.++...|+.+.+..+..+|
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 888888776654 3567777888888888877777765543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-17 Score=165.11 Aligned_cols=266 Identities=16% Similarity=0.133 Sum_probs=217.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS 307 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 307 (534)
++.+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++.....++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 5788999999999999999999999664 377889999999999999999999999988764 34444456899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 047017 308 AYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIR 387 (534)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 387 (534)
+|.+.++++....+ ++ .++...+..++..|...|++++|..+|..+ ..|..++.++.+.|++++
T Consensus 1176 aYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred HHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHH
Confidence 99999998864433 22 346667778999999999999999999985 378999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 388 ALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 388 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+.
T Consensus 1240 AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1240 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999876 35688999999999999999999876543 34667778999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCC-----CchHHHHHHHhhcchHHHHHHhhh
Q 047017 468 KGCKPNETTYVLLIEGIGYG--GWRAEAMELANALVSMHA-----ISRDTFKRLNRTFPLLDVYKEISH 529 (534)
Q Consensus 468 ~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~ 529 (534)
.. +-....|..+...+.+. ++..++.++|..-....+ .....|..+.-.|...++|+.|..
T Consensus 1309 Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1309 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 65 33566777777666654 566677777766655544 456789999999999999998873
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-19 Score=162.09 Aligned_cols=262 Identities=10% Similarity=-0.006 Sum_probs=162.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHH
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYC 310 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (534)
.+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445555555555555555555555442 1234444455555555555555555555554432 223344444444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHH--------------H
Q 047017 311 KDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTM--------------F 376 (534)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~ 376 (534)
..|++++|...++++... . |.+...+..+ .
T Consensus 101 ~~~~~~~A~~~~~~~~~~-----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS-----------------------------------Q-PQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT-----------------------------------S-TTTTTC-------------------
T ss_pred HcCCHHHHHHHHHHHHHh-----------------------------------C-CccHHHHHHHhHHHHHHHHHHHHHH
Confidence 555555555555444443 2 2222222222 2
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 047017 377 S-ALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRI 455 (534)
Q Consensus 377 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 455 (534)
. .+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 2 2556677777777777777653 3356677777777778888888888887776652 33566777777888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC------------chHHHHHHHhhcchHHH
Q 047017 456 NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI------------SRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~ 523 (534)
++|...++++++..+ .+..++..++.++...|++++|.+.++++++..|. .+..+..++.++...|+
T Consensus 223 ~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 223 QEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 888888888877642 35677777888888888888888888888887777 67788888888888888
Q ss_pred HHHhhhhhcc
Q 047017 524 YKEISHLATK 533 (534)
Q Consensus 524 ~~~~~~~~~k 533 (534)
+++|..++.+
T Consensus 302 ~~~A~~~~~~ 311 (327)
T 3cv0_A 302 PDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHH
Confidence 8888777654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-19 Score=165.83 Aligned_cols=231 Identities=16% Similarity=0.090 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..|..+...+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+.+....|.+..++..++.++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666666666666666666665543 4455566666666666666666666666666655556666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-hhh----------HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHH
Q 047017 118 KANQIELANKVLDRLRSRGFSPD-VVT----------YNIMIGSLCSRGMIESAFKVFDQLLRDNCKP--TVITYTILIQ 184 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 184 (534)
..|++++|.+.|+++.+. .|+ ... +..+...+...|++++|...|+++.+.. +. +..++..++.
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 666666666666665543 121 111 1223445555555555555555555443 22 3445555555
Q ss_pred HHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047017 185 ATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV 264 (534)
Q Consensus 185 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 264 (534)
.|...|++++|+..++++ ... .+.+..++..++.++...|++++|+..|+++.+.. +.+.
T Consensus 222 ~~~~~g~~~~A~~~~~~a------------------l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 281 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAA------------------LTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFI 281 (365)
T ss_dssp HHHHHTCHHHHHHHHHHH------------------HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHCCCHHHHHHHHHHH------------------HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCch
Confidence 555555555555555443 211 12234445555555555555555555555554432 1134
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (534)
.++..+..+|...|++++|...++++.+
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444455555555555555544443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=154.61 Aligned_cols=276 Identities=13% Similarity=0.097 Sum_probs=215.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
+-....|++..|+..++.+......+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34556899999999887765442221133556678889999999998876644 13456677788888888899999
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 317 LAIEFLDYMISDGC-LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 317 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
+|++.++++...+. +.+...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999887653 44567777888899999999999998886 568888999999999999999999999999
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047017 396 LSKGIEPDEITY---NSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 396 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++...|++++|...++++++..+ .
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 8763 443211 22334444568999999999999886 355788899999999999999999999999998764 3
Q ss_pred CHHHHHHHHHHHHccCCHHH-HHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhh
Q 047017 473 NETTYVLLIEGIGYGGWRAE-AMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHL 530 (534)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 530 (534)
+..++..++..+...|+.++ +.++++++++.+|.++.+.. ...+.+.++++..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 78889999999999999876 67899999999999996654 45556666666543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-18 Score=158.37 Aligned_cols=234 Identities=13% Similarity=-0.015 Sum_probs=160.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..+...+...|++++|+.+|+++.+.. +.+..++..++.++...|++++|...++.+.+..|.+..++..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45567888899999999999999999998875 56788899999999999999999999999999988899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIM--------------IG-SLCSRGMIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
+...|++++|.+.++++.... +.+...+..+ .. .+...|++++|...++++.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 999999999999999998773 2233333333 22 2555666677777776666554 44556666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047017 181 ILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL 260 (534)
Q Consensus 181 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 260 (534)
.++..+...|++++|...++++ .... +.+...+..+...+...|++++|...++++.+..
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRA------------------VELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhccHHHHHHHHHHH------------------HHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 6666666666666666666554 2221 2244555555666666666666666666655542
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047017 261 EPNVVTYSILISSLCRDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (534)
+.+...+..+...+...|++++|...++++.+
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22344555555555555555555555555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-18 Score=155.43 Aligned_cols=380 Identities=13% Similarity=0.081 Sum_probs=181.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 49 RAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 49 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. ++...|..++..+...|++++|..+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5778999999999882 3459999999999999999999999753 4777899999999999999999998
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccC
Q 047017 129 LDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKG 208 (534)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 208 (534)
++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8887765 5567888899999999999999888874 467779999999999999999999999865
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 047017 209 MVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLR 288 (534)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (534)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|.....
T Consensus 149 ---------------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 149 ---------------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp ---------------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred ---------------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 36889999999999999999999988 278899999999999999999965554
Q ss_pred HHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh-hCCCCC
Q 047017 289 AAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLS-DVGCPP 367 (534)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~ 367 (534)
. +...+.....++..|.+.|.+++|..+++..+... +-....|..+..+|++-+ +++..+.++... +.++||
T Consensus 202 ~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 202 H-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp T-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHH
T ss_pred H-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhcCcH
Confidence 3 22345556678889999999999999999998765 456677888887777653 444444444332 223343
Q ss_pred ------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 368 ------NVSSYNTMFSALWSSGDKIRALGMISEMLSKG-----------IEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 368 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
+...|..+...|...++++.|....-+-.... -..+...|...+..|.. ..+..--.++.-+
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~-~~p~~l~~ll~~l 353 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE-FKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-HCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 56788899999999999998876433211110 02234455555555552 1222222222222
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 431 ESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
...+. .+..+..+.+.|+..-+..++..+...+ +..+-.++-..|...++++.-+...+
T Consensus 354 -~~~ld-----~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 354 -SPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp -GGGCC-----HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HhccC-----cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 11111 2445566677777777777777666543 44555566677777777776554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=156.09 Aligned_cols=283 Identities=12% Similarity=0.110 Sum_probs=136.4
Q ss_pred hcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 047017 84 QERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKV 163 (534)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 163 (534)
+.|++++|.+.++++. .+.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..
T Consensus 15 ~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5688999999999983 3459999999999999999999999763 4777999999999999999999998
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047017 164 FDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG 243 (534)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (534)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------------------~pn~~a~~~IGd~~~~~g 136 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------------------GPNNAHIQQVGDRCYDEK 136 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------------------------CC----------------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------------------CCcHHHHHHHHHHHHHcC
Confidence 8877764 4557788999999999999998876653 356679999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHH
Q 047017 244 KWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLD 323 (534)
Q Consensus 244 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (534)
.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|.....
T Consensus 137 ~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 137 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred CHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999966 47999999999999999999999988 278899999999999999999966554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 047017 324 YMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK-GIEP 402 (534)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 402 (534)
.+ ...+.-...++..|.+.|.+++|+.+++...... +.....|+.+..+|++- .+++.++.++...+. +++|
T Consensus 202 ~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 202 HI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHH
T ss_pred HH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcH
Confidence 32 2344446678899999999999999999998876 77788899888888765 344444444433222 2333
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHH
Q 047017 403 ------DEITYNSLISCLCRDGMVDEAVGL 426 (534)
Q Consensus 403 ------~~~~~~~l~~~~~~~g~~~~A~~~ 426 (534)
+...|..+...|...++++.|...
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 346788899999999999988764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-18 Score=151.50 Aligned_cols=247 Identities=11% Similarity=0.051 Sum_probs=203.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC--HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 047017 271 ISSLCRDGKTEDAVDVLRAAKEKGLTPD--AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNG 348 (534)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (534)
++.....|++..|+..++.+... .|+ ......+..+|...|+++.|+..++. . .+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34566789999999998876543 233 23456678999999999999987654 2 3567788889999999999
Q ss_pred CHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047017 349 NADQALEIFEKLSDVGC-PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLL 427 (534)
Q Consensus 349 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 427 (534)
+.++|++.++++...+. |.+...+..+..++...|++++|+..+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999987653 66777888888999999999999999987 467888999999999999999999999
Q ss_pred HHHHhCCCCCChhhH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 428 VDMESTRFRPTVISY---NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 428 ~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
+++.+. .|+.... ..++..+...|++++|..+|+++++.. +.+...+..++.++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999886 3443211 123344445699999999999999974 4588899999999999999999999999999999
Q ss_pred CCchHHHHHHHhhcchHHHHHH-hhhhhc
Q 047017 505 AISRDTFKRLNRTFPLLDVYKE-ISHLAT 532 (534)
Q Consensus 505 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~ 532 (534)
|.+++++..++.++...|++.+ +.++++
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999876 445543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-17 Score=156.40 Aligned_cols=348 Identities=13% Similarity=0.034 Sum_probs=203.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH---hHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKS---NKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..+...+.+.|++++|+++|+++.+.+ +..++..++..+...|+. ++|..+|+..... ++.++..+...+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 346777888899999999999988765 556677777777778888 8899988888854 6677777777555
Q ss_pred hcC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 047017 118 KAN-----QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE---SAFKVFDQLLRDNCKPTVITYTILIQATMLE 189 (534)
Q Consensus 118 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (534)
..+ ++++|...|++..+.| +...+..|...|...+... ++.+.+......| +......|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 7788999998888765 2336667777777655433 3445555554444 345566677777777
Q ss_pred CCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhh
Q 047017 190 GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG---KWEEGEKLMTEMISRGLEPNVVT 266 (534)
Q Consensus 190 g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 266 (534)
+.++++......+ ++... ..++..+..+...|...| +.++|+..|++..+.| +++...
T Consensus 155 ~~~~~~~~~a~~~--------------~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~ 215 (452)
T 3e4b_A 155 GTYDQHLDDVERI--------------CKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQR 215 (452)
T ss_dssp TCGGGGHHHHHHH--------------HHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHH
T ss_pred CCcccCHHHHHHH--------------HHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHH
Confidence 7655544432221 22111 123336777777777777 7788888888877776 335554
Q ss_pred HHHHHHHHHhC----CChhHHHHHHHHHHHCCCCCCHhcHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047017 267 YSILISSLCRD----GKTEDAVDVLRAAKEKGLTPDAYSYDPLISA-Y--CKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339 (534)
Q Consensus 267 ~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (534)
+..+...|... +++++|..+|++.. .+ ++..+..+... + ...+++++|...|++..+.+ +...+..
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~ 288 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL 288 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 45566666443 57778888887776 32 45556666665 3 35677777777777777665 5566666
Q ss_pred HHHHHHhCC-----CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047017 340 ILAAFCKNG-----NADQALEIFEKLSDVGCPPNVSSYNTMFSALWS----SGDKIRALGMISEMLSKGIEPDEITYNSL 410 (534)
Q Consensus 340 l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (534)
+...|. .| ++++|+.+|++.. . .++.....+...|.. ..++++|...|++..+.|. ......+
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~L 360 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAI 360 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHH
Confidence 666665 33 7777777777766 3 355666666666654 3366677777776666542 2333444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCC
Q 047017 411 ISCLCR----DGMVDEAVGLLVDMESTR 434 (534)
Q Consensus 411 ~~~~~~----~g~~~~A~~~~~~~~~~~ 434 (534)
..+|.. ..++.+|..+|+...+.|
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 445442 345666666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=141.15 Aligned_cols=198 Identities=15% Similarity=0.026 Sum_probs=142.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047017 331 LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSL 410 (534)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (534)
|++...+..+...+...|++++|+..|+++.+.. |.+...+..+..++...|++++|+..++++.+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455566666666667777777777777766654 5566666667777777777777777777666642 3345566666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 047017 411 ISCLCRD-----------GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVL 479 (534)
Q Consensus 411 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 479 (534)
..++... |++++|...+++..+.. +.+...+..+..++...|++++|+..++++++.+ .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 89999999998888753 2356778888889999999999999999999877 57888889
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 480 LIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 480 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
++.++...|++++|+..|+++++.+|.++.++..++.++...|++++|...+.+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-17 Score=152.74 Aligned_cols=384 Identities=10% Similarity=0.036 Sum_probs=239.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI---ELANKVLDRLRSRGFSPDVVTYNIMIGSLC 152 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (534)
..+...+.+.|++++|..+|+.+.+.+ ++.++..+...|...|+. ++|.+.|++..+. +...+..+...+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 346777888999999999999988764 455666777788888888 8999999988854 5666777777555
Q ss_pred cCC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC
Q 047017 153 SRG-----MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP 227 (534)
Q Consensus 153 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 227 (534)
..+ ++++|...|++..+.| .+ ..+..|...|...+..+++.+ +...+......+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g-~~--~A~~~Lg~~y~~~~~~~~~~~---------------a~~~~~~a~~~g--- 139 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG-EG--NTLIPLAMLYLQYPHSFPNVN---------------AQQQISQWQAAG--- 139 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT-CS--SCHHHHHHHHHHCGGGCTTCC---------------HHHHHHHHHHHT---
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHhCCCCCCCHH---------------HHHHHHHHHHCC---
Confidence 554 7889999999998876 33 367778888876665443322 233333334433
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCCCHhcHHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG---KTEDAVDVLRAAKEKGLTPDAYSYDP 304 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (534)
++.....+...|...+.++++......+...-...++..+..+...|...| +.++|+..|++..+.+. ++...+..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~ 218 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDS 218 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 455677777788777755444444333322211224447788888888888 88888888888888763 35554466
Q ss_pred HHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 305 LISAYCKD----GRLDLAIEFLDYMISDGCLPDIVNYNTILAA-F--CKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 305 l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
+...|... +++++|..+|++.. . -++..+..+... + ...+++++|+.+|++..+.| ++..+..+..
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK 291 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 77777554 68888888888887 3 355666666666 3 45788888998888888765 6777777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 378 ALWSSG-----DKIRALGMISEMLSKGIEPDEITYNSLISCLCR----DGMVDEAVGLLVDMESTRFRPTVISYNIIILG 448 (534)
Q Consensus 378 ~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 448 (534)
.|. .| ++++|...|++.. . -+...+..+...|.. ..++++|..+|++..+.| +......|...
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 363 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQL 363 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHH
Confidence 776 44 8888888888776 3 356667777777765 338888888888888765 34445566666
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 449 FCK----TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 449 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
|.. ..++.+|..+++...+.|.. +.......+......++..+|.++.++..+.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 654 45788888888888887632 2222222222222334566677776666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-14 Score=141.83 Aligned_cols=448 Identities=10% Similarity=0.011 Sum_probs=315.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC---HHHHHHHH
Q 047017 53 FDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ---IELANKVL 129 (534)
Q Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 129 (534)
..+-+..|++.+..+ +.|...|..++..+...+.++.+..+|+.+....|.....|...+..-.+.|+ ++.+.++|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 445566677777765 77999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhCC-CCCChhhHHHHHHHHHcCCCH--------HHHHHHHHHHHhC-CC-CC-CHhhHHHHHHHHHh---------
Q 047017 130 DRLRSRG-FSPDVVTYNIMIGSLCSRGMI--------ESAFKVFDQLLRD-NC-KP-TVITYTILIQATML--------- 188 (534)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~~--------- 188 (534)
++.+... .+|++..|...+....+.++. +...++|+.++.. |. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998773 137888998888766655543 3455788877653 54 34 34677777665432
Q ss_pred cCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----C-
Q 047017 189 EGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR--GL----E- 261 (534)
Q Consensus 189 ~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~- 261 (534)
.++++.+..+|+++......+.+..+..|......- +..+...++.- ...+++.|...+.++... ++ +
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~---~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV---NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH---CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc---CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 345677888888876554555666665555554431 11111111111 122445555555543221 11 1
Q ss_pred ----------C--C------hhhHHHHHHHHHhCC-------ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 262 ----------P--N------VVTYSILISSLCRDG-------KTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 262 ----------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
| + ...|...+..--..+ ..+.+..+|++++.. .+..+..|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 1 0 123444444322222 123456778888776 3447788888888888899999
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC----------CCC-----------CHhhHHH
Q 047017 317 LAI-EFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG----------CPP-----------NVSSYNT 374 (534)
Q Consensus 317 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------~~~-----------~~~~~~~ 374 (534)
.|. .++++.... .+.+...+...+......|+++.|..+|+++.... .|. ...+|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 997 999999875 45677778888888999999999999999987631 121 2346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRD-GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 453 (534)
.+....+.|+.+.|..+|..+.+.........|...+..-.+. ++.+.|..+|+...+. .+.+...|..++......|
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC
Confidence 7888888899999999999998751112334444443333344 4589999999999876 3446677778888888899
Q ss_pred ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 454 RINESIEVLAAMFEKGCKP--NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 454 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
+.+.|..+|++++.....+ ....|...+..-...|+.+.+..+.+++.+..|.++.
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999999875422 3467778888778899999999999999999998663
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-16 Score=140.81 Aligned_cols=240 Identities=14% Similarity=0.048 Sum_probs=174.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGC--LPD----IVNYN 338 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 338 (534)
..+..+...+...|++++|...++++.+.. .+...+..++.++...|++++|...++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555666666666666666665554 4555566666666666666666666666555320 011 45667
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047017 339 TILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDG 418 (534)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 418 (534)
.++..+...|++++|+..|+++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7777777777888888777777765 3332 34556677888888888887752 334567778888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 419 MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
++++|...++++.+.. +.+...+..++.++...|++++|...++++++..+ .+...+..++.++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998888753 33677888899999999999999999999988753 367888899999999999999999999
Q ss_pred HHHHcC------CCchHHHHHHHhhc
Q 047017 499 ALVSMH------AISRDTFKRLNRTF 518 (534)
Q Consensus 499 ~~~~~~------~~~~~~~~~l~~~~ 518 (534)
++++.. |.+...+..+.+++
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHhh
Confidence 999988 88888888777664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-16 Score=139.68 Aligned_cols=253 Identities=11% Similarity=0.093 Sum_probs=159.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 047017 266 TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP--DIVNYNTILAA 343 (534)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 343 (534)
.+......+...|++++|+..++++.+.. +.+...+..++.++...|++++|...++++.+....+ ....+..++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445555556666666666666665543 2234455556666666666666666666665522111 12335666666
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
+...|++++|+..|+++.+.. |.+..++..+...+...|++++|...++++.+. .+.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777776666653 555666777777777777777777777766654 233455566666233344577778
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCHHHH
Q 047017 424 VGLLVDMESTRFRPTVISYNIIILGFCKTRR---INESIEVLAAMFEKG-CKPN------ETTYVLLIEGIGYGGWRAEA 493 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A 493 (534)
...++++.+.. +.+...+..+..++...|+ +++|...++++++.. ..|+ ..++..++..+...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777652 2235566667777777777 777888887777631 1122 25677888899999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 494 MELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.++++++++.+|.++.+...+..+....+
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999998887766543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=135.32 Aligned_cols=207 Identities=18% Similarity=0.148 Sum_probs=89.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..+...+...|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+.+.+.+|.+..++..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444555555555555555555555555443 34455555555555555555555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+...+. . ... .+...|++++|...|++.++.. |.+...+..+..++...|++++|
T Consensus 83 ~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 83 YVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHH
Confidence 554400 0 000 0000044455555554444443 33344444444444444444444
Q ss_pred HHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047017 196 MKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC 275 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (534)
+..|+++ .+.. .++..+..+..++...|++++|+..|+++++.. +.+...+..+...+.
T Consensus 138 ~~~~~~a------------------l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 138 EASLKQA------------------LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHH------------------HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT
T ss_pred HHHHHHH------------------Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 4444443 2222 234444444444555555555555555544432 113344444444455
Q ss_pred hCCChhHHHHHHHH
Q 047017 276 RDGKTEDAVDVLRA 289 (534)
Q Consensus 276 ~~~~~~~a~~~~~~ 289 (534)
..|++++|...+++
T Consensus 197 ~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 197 LKGKAEEAARAAAL 210 (217)
T ss_dssp C-------------
T ss_pred HccCHHHHHHHHHH
Confidence 55555555544443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=138.61 Aligned_cols=221 Identities=12% Similarity=0.068 Sum_probs=193.8
Q ss_pred HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC-------Hhh
Q 047017 299 AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPN-------VSS 371 (534)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~ 371 (534)
...+..++..+...|++++|...++++.+.. .+...+..++.++...|++++|+..++++.+.. |.+ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHH
Confidence 3567788899999999999999999999886 688899999999999999999999999987753 222 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK 451 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 451 (534)
+..+...+...|++++|...++++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 889999999999999999999999985 4553 34566788999999999998762 2356678889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.|++++|...++++++..+ .+..++..++.++...|++++|...++++++..|..+.++..++.+|...|++++|...+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999753 378889999999999999999999999999999999999999999999999999998876
Q ss_pred cc
Q 047017 532 TK 533 (534)
Q Consensus 532 ~k 533 (534)
.+
T Consensus 231 ~~ 232 (258)
T 3uq3_A 231 DA 232 (258)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-16 Score=138.86 Aligned_cols=247 Identities=13% Similarity=-0.032 Sum_probs=176.0
Q ss_pred hCCChhHHHHHHHHHHHCCCC---CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 047017 276 RDGKTEDAVDVLRAAKEKGLT---PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQ 352 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (534)
..|++++|+..++++.+.... .+...+..++..+...|++++|...++++.+.. +.+..++..++..+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456777777777777765221 134566677777778888888888888777764 4467777888888888888888
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 353 ALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 353 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 432 (534)
|+..|+++.+.. |.+...+..++.++...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888887764 556778888888888888888888888888774 33333333344455667888999998877766
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 433 TRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKP---NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 433 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
.. +++...+ .++..+...++.++|...++++++..... +..++..++.++...|++++|...++++++.+|.+..
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 52 3333333 46667777888888888888886542211 1467788899999999999999999999998886654
Q ss_pred HHHHHHhhcchHHHHHHhhhhh
Q 047017 510 TFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 510 ~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.+ +.++...++++++...+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 33 56777889999887764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-15 Score=134.35 Aligned_cols=236 Identities=10% Similarity=0.051 Sum_probs=134.1
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD--VVTYNIMIG 149 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 149 (534)
...+...+..+...|++++|+..|+.+.+..|.+..++..++.++...|++++|.+.++++.+.+..++ ...|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666777777776666665321111 223566666
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCH
Q 047017 150 SLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV 229 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 229 (534)
++...|++++|...|+++.+.. +.+..++..++.+|...|++++|...++++ ... .+.+.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------l~~-~~~~~ 142 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ------------------IRP-TTTDP 142 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG------------------CCS-SCCCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH------------------hhc-CCCcH
Confidence 6666777777777777666654 445566666666666667666666666655 111 12244
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC---hhHHHHHHHHHHHCC-CCCC------H
Q 047017 230 ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGK---TEDAVDVLRAAKEKG-LTPD------A 299 (534)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~ 299 (534)
..+..+...+...+++++|...|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ .
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 455555523333446666766666666653 2234455555555555555 555666666555431 0111 1
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 300 YSYDPLISAYCKDGRLDLAIEFLDYMISD 328 (534)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (534)
..+..+...|...|++++|...++++.+.
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 24444555555566666666666655554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-14 Score=128.86 Aligned_cols=228 Identities=12% Similarity=-0.000 Sum_probs=155.6
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 263 NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYN 338 (534)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (534)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555556666666666666666666652 244555566666666 666667776666666654 556666
Q ss_pred HHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047017 339 TILAAFCK----NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS----SGDKIRALGMISEMLSKGIEPDEITYNSL 410 (534)
Q Consensus 339 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (534)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 777777777777776653 56666667777776 777777777777777654 44556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047017 411 ISCLCR----DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----TRRINESIEVLAAMFEKGCKPNETTYVLLIE 482 (534)
Q Consensus 411 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 482 (534)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...++++.+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666766 777888888887777653 45666677777777 788888888888887764 2566777777
Q ss_pred HHHc----cCCHHHHHHHHHHHHHcCCCch
Q 047017 483 GIGY----GGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 483 ~~~~----~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
.|.. .+++++|.++++++.+.+|...
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 7877 7888888888888888876544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-15 Score=140.25 Aligned_cols=249 Identities=13% Similarity=0.122 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR-LDLAIEFLDYMISDGCLPDIVNYNTILAA 343 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (534)
..|..+...+...|++++|+..++++++.. +.+...|..+..++...|+ +++|+..+++++..+ +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456666677777778888888888777764 2356677777777777785 888888888887764 4466777778888
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR-DGMVDE 422 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 422 (534)
+...|++++|+..|+++.+.. |.+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888887775 6677788888888888888888888888887753 3356777777777777 555466
Q ss_pred H-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-------
Q 047017 423 A-----VGLLVDMESTRFRPTVISYNIIILGFCKTR--RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG------- 488 (534)
Q Consensus 423 A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 488 (534)
| +..+++.+... +.+...|..+..++...| ++++|++.+.++ +.+ +.+...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 6 47777777653 225667878888887777 688888888887 433 346677778888888764
Q ss_pred --CHHHHHHHHHHH-HHcCCCchHHHHHHHhhcch
Q 047017 489 --WRAEAMELANAL-VSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 489 --~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 520 (534)
..++|+++|+++ ++.+|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 88999888888888776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-16 Score=134.24 Aligned_cols=219 Identities=12% Similarity=0.077 Sum_probs=157.3
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
....+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34455666667777778888887777777653 4466777777788888888888888888877764 557777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 047017 378 ALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE 457 (534)
Q Consensus 378 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 457 (534)
.+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887753 3466777888888888899999999888887653 3367778888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 458 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
|...++++++... .+..++..++.++...|++++|...++++++..|.++.++..++.+....
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 9999999988753 36788889999999999999999999999999999998888877765543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-15 Score=130.70 Aligned_cols=201 Identities=10% Similarity=-0.007 Sum_probs=161.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+...|++++|+..|+++.+.. +.+..++..++..+...|++++|...++.+....+.+..++..++..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5667888888999999999999999988865 557888888999999999999999999999888888888899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
...|++++|.+.++++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988732244 45677788888888899999999888888765 55677778888888888888888
Q ss_pred HHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 196 MKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
...++.+ ... .+.+...+..+...+...|++++|...++.+.+.
T Consensus 195 ~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLF------------------AQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHH------------------HTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------HHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777765 322 2345566777777777888888888888877765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-13 Score=132.67 Aligned_cols=427 Identities=11% Similarity=0.028 Sum_probs=295.5
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---HhHHHHHHHHHHHcC--CCChhhH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERK---SNKAVRVMEILEKYG--EPDVFAY 109 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~--~~~~~~~ 109 (534)
.+...|..+++.+.+.+.++.+..+|++++..- |.....|..-+..-.+.|+ ++.+..+|+...... ++++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 367789999999999999999999999999873 7788999999999889999 999999999999887 3899999
Q ss_pred HHHHHHHHhcCCH--------HHHHHHHHHHHhC-CC-CCC-hhhHHHHHHHHHc---------CCCHHHHHHHHHHHHh
Q 047017 110 NALISGFCKANQI--------ELANKVLDRLRSR-GF-SPD-VVTYNIMIGSLCS---------RGMIESAFKVFDQLLR 169 (534)
Q Consensus 110 ~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 169 (534)
...+....+.++. +...++|+..... |. .++ ...|...+..... .++++.+..+|++++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9988877766553 3345788876643 65 554 5678877765442 3456789999999986
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc--CC----C-----------C--C--
Q 047017 170 DNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR--GC----Q-----------P--D-- 228 (534)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~----~-----------~--~-- 228 (534)
........+|......-...+. ..+.+.+.+. ...++.|...+..+... ++ + | +
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~----~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL----SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH----HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred CccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh----hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 4212122334332222111111 1122222221 12333344444332211 10 0 1 0
Q ss_pred ----HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHH-HHHHHHHHCCCC
Q 047017 229 ----VISYNMLLRTLLNMG-------KWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV-DVLRAAKEKGLT 296 (534)
Q Consensus 229 ----~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~ 296 (534)
...|...+..--..+ ..+.+..+|++++... +-+...|...+..+...|+.++|. .+|+..... ++
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 123444444333322 1344567788887763 447788888888888899999997 999999875 34
Q ss_pred CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC-----------CHHHHHHHHHHHHhCCCHHHHHH
Q 047017 297 PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG----------CLP-----------DIVNYNTILAAFCKNGNADQALE 355 (534)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~l~~~~~~~~~~~~A~~ 355 (534)
.+...+...+......|+++.|.++|+.++... .+. ...+|...+....+.|..+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 466667778888888999999999999988631 111 12467777787788899999999
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047017 356 IFEKLSDVGCPPNVSSYNTMFSALWSSG-DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTR 434 (534)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 434 (534)
+|..+.+...+.....|...+..-.+.+ +.+.|..+|+..++. .+.+...+..++......|+.+.|..+|++.....
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999987511233455555444444554 589999999999886 45567777888888888999999999999998764
Q ss_pred CCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047017 435 FRP--TVISYNIIILGFCKTRRINESIEVLAAMFEKGC 470 (534)
Q Consensus 435 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 470 (534)
..+ ....|...+..-...|+.+.+..+.+++.+.-+
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 322 345788888888889999999999999998743
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-15 Score=128.51 Aligned_cols=211 Identities=14% Similarity=-0.013 Sum_probs=151.1
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 047017 300 YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSAL 379 (534)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (534)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555566666666666666666666543 3355666666777777777777777777776653 55666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 047017 380 WSSGDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINES 458 (534)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 458 (534)
...|++++|...++++.+.+..| +...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776622233 45667777778888888888888888877653 23567777888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 459 IEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
..+++++++... .+...+..++..+...|++++|.++++++.+..|.++.....+
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 888888887643 4677777888888888999999999999988888887665543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-14 Score=124.70 Aligned_cols=214 Identities=11% Similarity=0.026 Sum_probs=169.4
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
+...+..++..+...|++++|...++.+.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 44566677777788888888888888877753 4456777788888888888888888888887764 667778888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 047017 378 ALWSS-GDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRI 455 (534)
Q Consensus 378 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 455 (534)
.+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888888732233 35677888888889999999999998887753 33577788888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 456 NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
++|..+++++++..+..+...+..+...+...|+.++|..+++.+.+..|.++.....+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999998875424677777888888899999999999999999999888766544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-15 Score=136.99 Aligned_cols=253 Identities=8% Similarity=0.034 Sum_probs=197.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERK-SNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
...|..+...+...|++++|+..++++++.. +.+..+|+.++.++...|+ +++|+..|+.+...+|.+..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4557788888999999999999999999876 6689999999999999997 9999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCHhH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATML-EGQTDK 194 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 194 (534)
+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..|+++++.+ +.+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999874 3478899999999999999999999999999986 7788999999999988 555566
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG--KWEEGEKLMTEMISRGLEPNVVTYSILIS 272 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 272 (534)
|.. +.++..+++..... +.+...|+.+..++...| ++++|++.+..+ +. .+.+...+..++.
T Consensus 254 A~~-------------~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~ 317 (382)
T 2h6f_A 254 AVL-------------EREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVD 317 (382)
T ss_dssp HHH-------------HHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHH
T ss_pred HHH-------------HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHH
Confidence 630 11122233334442 335667888888887777 578888888777 33 2335667777777
Q ss_pred HHHhCC--------C-hhHHHHHHHHH-HHCCCCCCHhcHHHHHHHH
Q 047017 273 SLCRDG--------K-TEDAVDVLRAA-KEKGLTPDAYSYDPLISAY 309 (534)
Q Consensus 273 ~~~~~~--------~-~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 309 (534)
+|...| + .++|+.+++.+ .+.+ +.....|..+...+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 318 IYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 777653 2 47788888887 5542 22333444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=132.42 Aligned_cols=203 Identities=9% Similarity=0.068 Sum_probs=145.6
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
......|..+...+...|++++|+..|+++++.. +.+...+..++..+...|++++|...++.+....+.+..++..++
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4566778888888999999999999999998865 567888888999999999999999999999988888888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTD 193 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (534)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999888763 3467778888888888899999999988888764 556777778888888888888
Q ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 194 KAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
+|...++++ .... +.+..++..+..++...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~------------------~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAV------------------TEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHH------------------HHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------HHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 887777765 2221 235666777777777777777777777777765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-14 Score=122.90 Aligned_cols=202 Identities=11% Similarity=0.031 Sum_probs=126.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+..+...+...|++++|+..|+++.+.. +.+...+..++.++...|++++|...++.+....+.+..++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4456666667777777777777777766654 445666667777777777777777777777766666666777777777
Q ss_pred Hhc-CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 117 CKA-NQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 117 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 777 777777777777665222222 4556666666667777777777776666553 4445566666666666666666
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
|...++++ .......+...+..+...+...|+.+.+..+++.+...
T Consensus 166 A~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKY------------------QSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHH------------------HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------HHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666554 22211134444555555556666666666666665543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-13 Score=121.90 Aligned_cols=225 Identities=12% Similarity=0.005 Sum_probs=199.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR----DGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
++.++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56778889999999999999999999998842 56778889999999 999999999999999875 778888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 047017 304 PLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK----NGNADQALEIFEKLSDVGCPPNVSSYNTM 375 (534)
Q Consensus 304 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 375 (534)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 77888999999999 999999999999999875 67778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 376 FSALWS----SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR----DGMVDEAVGLLVDMESTRFRPTVISYNIIIL 447 (534)
Q Consensus 376 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 447 (534)
...|.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 899999999999999864 56778888999999 999999999999998864 3667788889
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCC
Q 047017 448 GFCK----TRRINESIEVLAAMFEKGC 470 (534)
Q Consensus 448 ~~~~----~g~~~~A~~~~~~~~~~~~ 470 (534)
.|.. .+++++|...++++.+.+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 9998 9999999999999999863
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=134.32 Aligned_cols=247 Identities=10% Similarity=-0.053 Sum_probs=170.8
Q ss_pred hcCChhHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHH
Q 047017 49 RAGKFDESLYFIESMVANGC---KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA 125 (534)
Q Consensus 49 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 125 (534)
..|++++|+..|+++.+... +.+..++..++.++...|++++|...|+.+...+|.+..++..++.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45789999999999987632 235677888999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc
Q 047017 126 NKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC 205 (534)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 205 (534)
.+.|+++.+.. +.+...+..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...+.+.
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--- 170 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH--- 170 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH---
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH---
Confidence 99999988763 3367788888899999999999999999988764 33333333334445556777776666554
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhCCChhH
Q 047017 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP---NVVTYSILISSLCRDGKTED 282 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 282 (534)
.... +++...+ .++..+...++.++|...+.......... +...+..+...+...|++++
T Consensus 171 ---------------~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 171 ---------------FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp ---------------HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 3321 2233333 35666667777777877777766542110 13556666777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHH
Q 047017 283 AVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFL 322 (534)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (534)
|...++++.+.. |+. +.....++...|++++|++.+
T Consensus 234 A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 234 ATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 777777776652 211 222344555566666665544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-15 Score=139.98 Aligned_cols=214 Identities=13% Similarity=0.090 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA-DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMIS 393 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (534)
++++...++...... +.+...+..+...+...|++ ++|+..|+++.+.. |.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666655442 44677777888888888888 88888888887764 6667788888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CChH
Q 047017 394 EMLSKGIEPDEITYNSLISCLCRD---------GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT--------RRIN 456 (534)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 456 (534)
++.+. .|+...+..+..++... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88875 46667777888888888 88888888888887753 33577788888888888 8899
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 457 ESIEVLAAMFEKGCK--PNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
+|+..|+++++..+. .+...+..++.+|...|++++|.+.|+++++.+|..+.++..++.++...+++++|...+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999886431 37888888999999999999999999999999999999999999999999999888875543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=144.17 Aligned_cols=298 Identities=13% Similarity=0.065 Sum_probs=224.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCC-
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN----VVTYSILISSLCRDGKTEDAVDVLRAAKEK----GLT- 296 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 296 (534)
......+......+...|++++|...|+++...... + ...+..+...+...|++++|...++++... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566777888899999999999999999887422 3 356778888999999999999999887643 111
Q ss_pred CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCC--------------------HH
Q 047017 297 PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL-PD----IVNYNTILAAFCKNGN--------------------AD 351 (534)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 351 (534)
.....+..+...+...|++++|...++++...... ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 12446777888899999999999999888764100 11 3477888889999999 99
Q ss_pred HHHHHHHHHhhC----C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 047017 352 QALEIFEKLSDV----G-CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPD----EITYNSLISCLCRDGMVD 421 (534)
Q Consensus 352 ~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~ 421 (534)
+|...+++.... + .+....++..+...+...|++++|...++++.+... .++ ..++..+..++...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998877543 1 112234678888999999999999999998875310 111 237788889999999999
Q ss_pred HHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHH
Q 047017 422 EAVGLLVDMEST----RFRP-TVISYNIIILGFCKTRRINESIEVLAAMFEKGCK-PN----ETTYVLLIEGIGYGGWRA 491 (534)
Q Consensus 422 ~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 491 (534)
+|...+++..+. +..+ ...++..+...+...|++++|...++++++.... ++ ..++..++..+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887643 1111 1457778899999999999999999998863111 12 557778899999999999
Q ss_pred HHHHHHHHHHHcCC------CchHHHHHHHhhcchHHHH
Q 047017 492 EAMELANALVSMHA------ISRDTFKRLNRTFPLLDVY 524 (534)
Q Consensus 492 ~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~ 524 (534)
+|..+++++++..+ ....++..++.++...|+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999999988632 2245777788888777765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-15 Score=140.57 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=175.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCCh
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDV----VMCTKLIKKFFQERKSNKAVRVMEILEKYG------EPDV 106 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~ 106 (534)
...+..+...+...|++++|+..|+++++.+ +.+. .++..++.++...|++++|...++++.... +...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445567778889999999999999998864 3343 478888899999999999999998887652 4455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHcCCC-----------------HHHHHHHH
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLRSR----GF-SPDVVTYNIMIGSLCSRGM-----------------IESAFKVF 164 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 164 (534)
.++..+...+...|++++|...++++.+. +- +....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888889999999999999998887654 11 1124567778888888888 88888888
Q ss_pred HHHHhC----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047017 165 DQLLRD----NC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL 239 (534)
Q Consensus 165 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (534)
++..+. +. +....++..+...|...|++++|...+++. +.+.... .........+..+...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~--~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER-----------LRIAREF--GDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-----------HHHHHhc--CCcHHHHHHHHHHHHHH
Confidence 776542 11 112346677777888888888888877765 1221110 00000123566677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-----CCCHhcHHHHHHHH
Q 047017 240 LNMGKWEEGEKLMTEMISRGLE-----PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL-----TPDAYSYDPLISAY 309 (534)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 309 (534)
...|++++|...+++....... ....++..+...+...|++++|...++++.+... ......+..+..+|
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 7777777777777766543110 0133455555556666666666666655543200 00012333444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 047017 310 CKDGRLDLAIEFLDYMIS 327 (534)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~ 327 (534)
...|++++|...+++..+
T Consensus 354 ~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 444555554444444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-15 Score=138.12 Aligned_cols=276 Identities=14% Similarity=0.109 Sum_probs=172.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCC
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD----VVMCTKLIKKFFQERKSNKAVRVMEILEKYG------EPD 105 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~ 105 (534)
....+......+...|++++|+..|+++++.. +.+ ..++..++..+...|++++|...++.+.... +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44556777888899999999999999988864 333 3567788888999999999999988876542 223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHcCCC--------------------HHHH
Q 047017 106 VFAYNALISGFCKANQIELANKVLDRLRSRGF-SPD----VVTYNIMIGSLCSRGM--------------------IESA 160 (534)
Q Consensus 106 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a 160 (534)
..++..+...+...|++++|...++++.+... .++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 55778888888889999999988888765410 011 3467777788888888 8888
Q ss_pred HHHHHHHHhC----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCC-CCHhhHHH
Q 047017 161 FKVFDQLLRD----NC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQ-PDVISYNM 234 (534)
Q Consensus 161 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 234 (534)
...+++.... +. +....++..++..|...|++++|...+++. +.+.. ..+.. ....++..
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~---~~~~~~~~~~~~~~ 232 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR-----------LLIAK---EFGDKAAERRAYSN 232 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH-----------HHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-----------HHHHH---hcCCcHHHHHHHHH
Confidence 8887776542 11 112345667777777778877777777664 11111 11100 01235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CC----HhcHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLE-PN----VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLT-PD----AYSYDP 304 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 304 (534)
+...+...|++++|...+++....... ++ ..++..+...+...|++++|...++++.+.... .+ ..++..
T Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3sf4_A 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS 312 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 667777777777777777766543100 01 334555556666666666666666555432100 01 223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 047017 305 LISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
+...|...|++++|...+++..
T Consensus 313 la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-16 Score=151.73 Aligned_cols=114 Identities=11% Similarity=0.145 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSD---VGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
.+|+.++.+|++.|+.++|..+|..|.+ .|+.||..+|+.|+.+|++.|+.++|.++|++|.+.|+.||..||+.+|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4566666666666666666666655432 2455566666666666666666666666666666666666666666666
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 412 SCLCRDGM-VDEAVGLLVDMESTRFRPTVISYNIIILG 448 (534)
Q Consensus 412 ~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 448 (534)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 66655554 34555666666655666666655555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-15 Score=140.83 Aligned_cols=280 Identities=15% Similarity=0.102 Sum_probs=212.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHC----C-CCCCH
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV----VTYSILISSLCRDGKTEDAVDVLRAAKEK----G-LTPDA 299 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 299 (534)
...+..+...+...|++++|+..|+++++.... +. ..+..+...+...|++++|...++++.+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778889999999999999999887432 33 46788889999999999999999988753 1 12234
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhCCC-----------------HHHHHHHH
Q 047017 300 YSYDPLISAYCKDGRLDLAIEFLDYMISD----G-CLPDIVNYNTILAAFCKNGN-----------------ADQALEIF 357 (534)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 357 (534)
..+..+...|...|++++|...++++... + .+....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56778888999999999999999988764 1 11234577888889999999 99999998
Q ss_pred HHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 047017 358 EKLSDV----GC-PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIE-PD----EITYNSLISCLCRDGMVDEAVGLL 427 (534)
Q Consensus 358 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~ 427 (534)
++..+. +. +....++..+...+...|++++|...+++..+.... ++ ...+..+..++...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887543 11 122347778888999999999999999988764110 11 236778888999999999999999
Q ss_pred HHHHhCCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHH
Q 047017 428 VDMESTRFR-P----TVISYNIIILGFCKTRRINESIEVLAAMFEKGCK-PN----ETTYVLLIEGIGYGGWRAEAMELA 497 (534)
Q Consensus 428 ~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~ 497 (534)
++....... . ...++..+...+...|++++|..+++++++.... ++ ..++..++..+...|++++|..++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988765211 1 1456778888999999999999999998874111 11 346778889999999999999999
Q ss_pred HHHHHcCCCchH
Q 047017 498 NALVSMHAISRD 509 (534)
Q Consensus 498 ~~~~~~~~~~~~ 509 (534)
+++++.......
T Consensus 367 ~~al~~~~~~~~ 378 (411)
T 4a1s_A 367 EQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHCCHHHH
T ss_pred HHHHHHHhhccc
Confidence 999988765544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.8e-14 Score=114.96 Aligned_cols=164 Identities=17% Similarity=0.159 Sum_probs=152.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...|..+...+...|++++|+..|+++++.+ |.+..++..++.++...|++++|...++.+....+.+..++..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999999999999886 67899999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+...++++.|.+.+.+..... +.+...+..+..++...|++++|++.|+++.+.. |.+..++..++.+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999988763 3467889999999999999999999999999886 77888999999999999999999
Q ss_pred HHHHHHh
Q 047017 196 MKLLDEM 202 (534)
Q Consensus 196 ~~~~~~~ 202 (534)
++.|+++
T Consensus 161 ~~~~~~a 167 (184)
T 3vtx_A 161 VKYFKKA 167 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-14 Score=114.88 Aligned_cols=172 Identities=15% Similarity=0.071 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLIS 412 (534)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 412 (534)
+..+|..++..|...|++++|+..|+++.+.. |.+..++..++.++...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56677788888888888888888888887775 6677888888888888888888888888877653 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAE 492 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 492 (534)
.+...++++.|...+.+..... +.+...+..+..++...|++++|++.++++++.++ .+..++..++.++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888887653 33567788888888999999999999999888753 367888889999999999999
Q ss_pred HHHHHHHHHHcCCCch
Q 047017 493 AMELANALVSMHAISR 508 (534)
Q Consensus 493 A~~~~~~~~~~~~~~~ 508 (534)
|++.|+++++.+|.++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999998877543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-13 Score=119.09 Aligned_cols=188 Identities=9% Similarity=-0.025 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 316 DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVS-SYNTMFSALWSSGDKIRALGMISE 394 (534)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 394 (534)
++|..+|++.+..-.+.+...|..++..+...|++++|..+|+++.+.. |.+.. .|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555555555552112234455555555555555555555555555532 22232 455555555555555566655555
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 047017 395 MLSKGIEPDEITYNSLISCLC-RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG-CKP 472 (534)
Q Consensus 395 ~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 472 (534)
+.+.. +++...|...+.... ..|++++|..+|++..+.. +.+...|..++..+...|++++|..+|+++++.. ++|
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 55432 222233322222211 2456666666665555431 2244555555555555666666666666665542 222
Q ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 473 --NETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 473 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
....|..++......|+.++|..+++++++..|.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 3445555555555556666666666666665554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-14 Score=128.38 Aligned_cols=275 Identities=14% Similarity=0.109 Sum_probs=165.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCChh
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD----VVMCTKLIKKFFQERKSNKAVRVMEILEKYG------EPDVF 107 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~ 107 (534)
..+......+...|++++|+..|+++++.. +.+ ...+..++..+...|++++|...++.+.... +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345566778888999999999999988864 333 3567788888899999999999888876542 23356
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHcCCC--------------------HHHHHH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSRGF-SPD----VVTYNIMIGSLCSRGM--------------------IESAFK 162 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 162 (534)
++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888888888999998888888764310 112 3366777778888888 788887
Q ss_pred HHHHHHhC----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCC-CCCHhhHHHHH
Q 047017 163 VFDQLLRD----NC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGC-QPDVISYNMLL 236 (534)
Q Consensus 163 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 236 (534)
.+++.... +. +....++..+...+...|++++|...+++. ..+... .+. .....++..+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-----------~~~~~~---~~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR-----------LLIAKE---FGDKAAERRAYSNLG 230 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHHHHH---HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----------HHHHHh---cCChHHHHHHHHHHH
Confidence 77776532 11 112335666777777777777777777654 111111 110 01123556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-----CCCHhcHHHHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLE-PN----VVTYSILISSLCRDGKTEDAVDVLRAAKEKGL-----TPDAYSYDPLI 306 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~ 306 (534)
..+...|++++|...+++....... .+ ..++..+...+...|++++|...++++.+... .....++..+.
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 310 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 310 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 6667777777777776665543100 01 23444555555555555555555555443200 00012333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 047017 307 SAYCKDGRLDLAIEFLDYMIS 327 (534)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~ 327 (534)
..|...|++++|...++++.+
T Consensus 311 ~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 444444444444444444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-13 Score=118.43 Aligned_cols=217 Identities=11% Similarity=0.049 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------cCCH-------hHHHHHHHHHHH-cCCCChhhHHHHHHHHHh
Q 047017 54 DESLYFIESMVANGCKPDVVMCTKLIKKFFQ-------ERKS-------NKAVRVMEILEK-YGEPDVFAYNALISGFCK 118 (534)
Q Consensus 54 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 118 (534)
++|+..|++++... +.+...|..++..+.. .|++ ++|..+|+++.. ..|.+..+|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888888764 6678888888877653 4775 788888888888 467777888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcCCHhHH
Q 047017 119 ANQIELANKVLDRLRSRGFSPD-VV-TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATM-LEGQTDKA 195 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 195 (534)
.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+.+ +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888875 443 33 78888888888888888888888888764 444444443333322 24666666
Q ss_pred HHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHHHH
Q 047017 196 MKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG-LEP--NVVTYSILIS 272 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~ 272 (534)
..+|++. .... +.+...|..++..+.+.|++++|..+|++.+... .+| ....|..++.
T Consensus 189 ~~~~~~a------------------l~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~ 249 (308)
T 2ond_A 189 FKIFELG------------------LKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp HHHHHHH------------------HHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred HHHHHHH------------------HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 6666654 3321 2356677777777777788888888888877752 233 3456677777
Q ss_pred HHHhCCChhHHHHHHHHHHHC
Q 047017 273 SLCRDGKTEDAVDVLRAAKEK 293 (534)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (534)
.....|+.+.|..+++++.+.
T Consensus 250 ~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 250 FESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.1e-15 Score=133.88 Aligned_cols=277 Identities=13% Similarity=0.075 Sum_probs=193.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCC-CCH
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN----VVTYSILISSLCRDGKTEDAVDVLRAAKEK----GLT-PDA 299 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 299 (534)
...+......+...|++++|...++++.+.... + ...+..+...+...|++++|...++++.+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344566677888999999999999998887422 3 356778888899999999999999887653 111 124
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCC--------------------HHHHH
Q 047017 300 YSYDPLISAYCKDGRLDLAIEFLDYMISDGC-LPD----IVNYNTILAAFCKNGN--------------------ADQAL 354 (534)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~ 354 (534)
..+..+...+...|++++|...++++.+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 4667778888889999999998888765410 112 2367777888888888 88888
Q ss_pred HHHHHHhhC----C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 047017 355 EIFEKLSDV----G-CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPD----EITYNSLISCLCRDGMVDEAV 424 (534)
Q Consensus 355 ~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~ 424 (534)
..+++.... + .+.....+..+...+...|++++|...++++.+... .++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888876442 1 011234667777888888888888888888775310 011 236677777888888888888
Q ss_pred HHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHH
Q 047017 425 GLLVDMESTRFR-PT----VISYNIIILGFCKTRRINESIEVLAAMFEKGCK-PN----ETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 425 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~ 494 (534)
..+++..+.... ++ ..++..+...+...|++++|...++++++.... .+ ..++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888877643111 11 446667778888888888888888887763111 11 345667788888888888888
Q ss_pred HHHHHHHHcCCC
Q 047017 495 ELANALVSMHAI 506 (534)
Q Consensus 495 ~~~~~~~~~~~~ 506 (534)
.+++++++..+.
T Consensus 324 ~~~~~a~~~~~~ 335 (338)
T 3ro2_A 324 HFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-14 Score=134.24 Aligned_cols=213 Identities=9% Similarity=-0.035 Sum_probs=175.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-hHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 53 FDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKS-NKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDR 131 (534)
Q Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 131 (534)
+++++..++...... +.+...+..++.++...|++ ++|+..|+++.+.+|.+..+|..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556666777665543 56788999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHcC---------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc--------CCHhH
Q 047017 132 LRSRGFSPDVVTYNIMIGSLCSR---------GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE--------GQTDK 194 (534)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 194 (534)
+.+. .|+...+..+..++... |++++|...|+++.+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9987 57788889999999999 99999999999999876 66788999999998887 77777
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQ--PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILIS 272 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 272 (534)
|+..|+++ ...... .+...|..+..++...|++++|+..|++..+... .+...+..+..
T Consensus 240 A~~~~~~a------------------l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~ 300 (474)
T 4abn_A 240 ALSAYAQA------------------EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHH------------------HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHH------------------HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 77777665 443210 3677888888888888888888888888887642 25566777777
Q ss_pred HHHhCCChhHHHHHHH
Q 047017 273 SLCRDGKTEDAVDVLR 288 (534)
Q Consensus 273 ~~~~~~~~~~a~~~~~ 288 (534)
++...|++++|+..+.
T Consensus 301 ~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 301 LLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777787777776553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-13 Score=126.95 Aligned_cols=234 Identities=10% Similarity=0.027 Sum_probs=132.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHH
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRD----NCKP-TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLE 221 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 221 (534)
....+...|++++|...|++..+. +-++ ...++..++.+|...|++++|...+.+. +.++..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a-----------l~~~~~-- 175 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA-----------YEIYKE-- 175 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHT--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHh--
Confidence 556677788888888888888754 1111 3357788888888899999888888765 222211
Q ss_pred HcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-
Q 047017 222 SRGC--QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE-PN----VVTYSILISSLCRDGKTEDAVDVLRAAKEK- 293 (534)
Q Consensus 222 ~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 293 (534)
.+. +....+++.+..++...|++++|+..+++....... ++ ..++..+..+|...|++++|...++++.+.
T Consensus 176 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 176 -HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp -CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 110 112346777888888889999998888887654111 11 235666677777777777777777766651
Q ss_pred ---CC-CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhh
Q 047017 294 ---GL-TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG----CLPDIVNYNTILAAFCKNGN---ADQALEIFEKLSD 362 (534)
Q Consensus 294 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~ 362 (534)
+. +....++..++..+...|++++|...+++..... .+.....+..+...+...|+ .++|+.++++...
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~ 334 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML 334 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC
Confidence 11 2233455666666666666666666666655421 01111123334444445555 4444444443311
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 363 VGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396 (534)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 396 (534)
.+.....+..+...|...|++++|...+++..
T Consensus 335 --~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 335 --YADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01122233444444555555555555544443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-15 Score=146.80 Aligned_cols=151 Identities=14% Similarity=0.180 Sum_probs=124.3
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMIS---DGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNT 374 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 374 (534)
...+|+.++.+|++.|++++|..+|+.|.+ .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 446899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHH
Q 047017 375 MFSALWSSGD-KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT------VISYNIIIL 447 (534)
Q Consensus 375 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 447 (534)
++.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. ..++.++++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999997 478999999999999999999999998765553 344444444 2234443 334444555
Q ss_pred HHHhcC
Q 047017 448 GFCKTR 453 (534)
Q Consensus 448 ~~~~~g 453 (534)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-13 Score=126.60 Aligned_cols=232 Identities=9% Similarity=-0.045 Sum_probs=175.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 047017 270 LISSLCRDGKTEDAVDVLRAAKEK----GLTP-DAYSYDPLISAYCKDGRLDLAIEFLDYMISDG--C----LPDIVNYN 338 (534)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 338 (534)
....+...|++++|...++++.+. +..+ ...++..++..|...|+++.|...+.+..+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999998864 1111 23567888899999999999999998887631 1 11235778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 047017 339 TILAAFCKNGNADQALEIFEKLSDVGC-PPN----VSSYNTMFSALWSSGDKIRALGMISEMLSK----GI-EPDEITYN 408 (534)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 408 (534)
.++..|...|++++|+..++++.+... .++ ..++..++.+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998865410 011 247788999999999999999999988862 22 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMEST----RFRPTVISYNIIILGFCKTRR---INESIEVLAAMFEKGCKP-NETTYVLL 480 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 480 (534)
.+..++...|++++|...+++..+. +.+.....+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999887653 111122335667888888888 77777777766 2222 34566788
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC
Q 047017 481 IEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
+..|...|++++|..+++++++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-14 Score=126.11 Aligned_cols=167 Identities=13% Similarity=0.089 Sum_probs=138.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVAN-------GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG------ 102 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 102 (534)
....+..+...+...|++++|+.+|+++.+. ..+....++..++..+...|++++|...++.+....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566888999999999999999999998873 234556778899999999999999999999988752
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---
Q 047017 103 --EPDVFAYNALISGFCKANQIELANKVLDRLRSR------GFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD--- 170 (534)
Q Consensus 103 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 170 (534)
+....++..++..+...|++++|.+.++++.+. +..| ....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999998764 2122 3566788899999999999999999998865
Q ss_pred ---C-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 171 ---N-CKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 171 ---~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+ .+....++..++.+|...|++++|...++++
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1334457888999999999999999999876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-12 Score=110.52 Aligned_cols=211 Identities=10% Similarity=-0.005 Sum_probs=169.0
Q ss_pred CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047017 297 PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMF 376 (534)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 376 (534)
.++..+...+..+...|++++|...|+++++...+++...+..++.++...|++++|+..+++..+.. |.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888999999999999999999999987633677888889999999999999999999999875 66788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPDE-------ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISYNIII 446 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 446 (534)
.++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...++++.+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998853 3344 45778888899999999999999999875 444 46677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.++...| ..+++++...+. .+...+.... ....+.+++|+..++++++..|.++.+...+..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7776544 455666666542 2444444433 334567999999999999999999998888876654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=124.74 Aligned_cols=248 Identities=16% Similarity=0.055 Sum_probs=118.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------CC
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMISR-------GLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEK------GL 295 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 295 (534)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666667777777666666552 11222344555555566666666666666555432 10
Q ss_pred -CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 047017 296 -TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNT 374 (534)
Q Consensus 296 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 374 (534)
+.....+..+...+...|++++|...++++.+... .......+.....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCChHHHHHHHH
Confidence 11122334444444444455544444444433200 0000000112234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-h
Q 047017 375 MFSALWSSGDKIRALGMISEMLSK------GIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMEST-------RFRPT-V 439 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~ 439 (534)
+...+...|++++|...++++.+. +..| ...++..+..++...|++++|...++++.+. ...+. .
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555555555555555555555432 1111 2234555566666666666666666655431 01111 1
Q ss_pred hh------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 440 IS------YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 440 ~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.. +..+...+...+.+.++...++...... +....++..++.+|...|++++|.++++++++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11 1122222334455555666666665432 22456777888888899999999999988887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-13 Score=132.37 Aligned_cols=172 Identities=16% Similarity=0.062 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047017 331 LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSL 410 (534)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (534)
+.+..+++.+...|.+.|++++|+..|+++.+.. |.+..++..+..+|.+.|++++|+..|+++++.. +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3456788889999999999999999999998875 6778889999999999999999999999888753 3357788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047017 411 ISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWR 490 (534)
Q Consensus 411 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 490 (534)
..++...|++++|.+.|++..+.. +.+...|..+..+|...|++++|++.|+++++..+. +...+..++.++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 999999999999999999888753 235778888999999999999999999999887533 678888899999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 047017 491 AEAMELANALVSMHAI 506 (534)
Q Consensus 491 ~~A~~~~~~~~~~~~~ 506 (534)
++|.+.++++++..+.
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999988886543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-11 Score=111.48 Aligned_cols=269 Identities=12% Similarity=0.019 Sum_probs=149.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCH----hcHHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPNVV----TYSILISSLCRDGKTEDAVDVLRAAKEKGL-TPDA----YSYDPL 305 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l 305 (534)
....+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+. ..+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556777777777777766653221211 344555666667777777777766654210 0111 123455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC----CCHhhHHH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISD----GCL--P-DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCP----PNVSSYNT 374 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ 374 (534)
...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66667777777777777666542 111 1 2234555666677777777777777766543211 11234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEP--DEITYN----SLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISYNII 445 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 445 (534)
+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 6666777777777777777665421111 111111 222335567777777777776654322111 1234556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 446 ILGFCKTRRINESIEVLAAMFEK----GCKPNE-TTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
...+...|++++|...++++... +..++. ..+..+..++...|+.++|...+++++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66677777777777777766542 111111 24455666677777777777777776654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-12 Score=105.36 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=147.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++.+.+..+.+..++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567788899999999999999999988764 567888999999999999999999999999999888999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 196 (534)
...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998763 4467888899999999999999999999999875 667889999999999999999999
Q ss_pred HHHHHh
Q 047017 197 KLLDEM 202 (534)
Q Consensus 197 ~~~~~~ 202 (534)
..++.+
T Consensus 165 ~~~~~~ 170 (186)
T 3as5_A 165 PHFKKA 170 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-12 Score=128.21 Aligned_cols=164 Identities=10% Similarity=0.027 Sum_probs=152.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...|..+...+.+.|++++|+..|+++++.. +.+..++..++.++.+.|++++|+..|+++.+.+|.+..+|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678999999999999999999999999875 66789999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|+++++.. +.+...+..++.++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999873 3368899999999999999999999999999886 66788999999999999999999
Q ss_pred HHHHHHh
Q 047017 196 MKLLDEM 202 (534)
Q Consensus 196 ~~~~~~~ 202 (534)
.+.++++
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-12 Score=104.39 Aligned_cols=170 Identities=15% Similarity=0.078 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL 414 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 414 (534)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777778888888888888877654 5567778888888888888888888888887652 34567777888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
...|++++|...++++.+.. +.+...+..++.++...|++++|...++++++.. +.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887653 3466778888888889999999999999888875 336778888888999999999999
Q ss_pred HHHHHHHHcCCCch
Q 047017 495 ELANALVSMHAISR 508 (534)
Q Consensus 495 ~~~~~~~~~~~~~~ 508 (534)
.+++++++..|.++
T Consensus 165 ~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 165 PHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCch
Confidence 99999988776655
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-11 Score=111.47 Aligned_cols=272 Identities=13% Similarity=0.046 Sum_probs=180.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCh----hhH
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVV----MCTKLIKKFFQERKSNKAVRVMEILEKYG--EPDV----FAY 109 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~ 109 (534)
.......+...|++++|...+++++......+.. ++..+...+...|++++|...++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445566778999999999999998865322322 46677788899999999999999987654 2222 336
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC----CCHhh
Q 047017 110 NALISGFCKANQIELANKVLDRLRSR----GFS--P-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCK----PTVIT 178 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~ 178 (534)
..+...+...|++++|.+.+++.... +.. | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67888899999999999999987653 221 2 2345667888999999999999999998765321 12356
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHH----HHHHHHHhcCCHHHHHHHHHH
Q 047017 179 YTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYN----MLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 179 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~ 254 (534)
+..+...+...|++++|...+++.. .+. ...+. + ..... ..+..+...|++++|...++.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~-----------~~~---~~~~~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLE-----------NLL---GNGKY-H-SDWISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-----------HHH---TTSCC-C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----------HHH---hccCc-c-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7788888999999999999888751 000 01111 1 11111 233446788999999998888
Q ss_pred HHHCCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCCH-hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 255 MISRGLEPN---VVTYSILISSLCRDGKTEDAVDVLRAAKEK----GLTPDA-YSYDPLISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 255 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
.......+. ...+..+...+...|++++|...++.+... +..++. ..+..+..++...|+.++|...+++..
T Consensus 241 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 765432111 123455666777777777777777766542 111111 134444555566666666666666554
Q ss_pred H
Q 047017 327 S 327 (534)
Q Consensus 327 ~ 327 (534)
.
T Consensus 321 ~ 321 (373)
T 1hz4_A 321 K 321 (373)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-12 Score=117.50 Aligned_cols=158 Identities=10% Similarity=0.013 Sum_probs=67.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CC----CCHhhHHHHHH
Q 047017 309 YCKDGRLDLAIEFLDYMISDGC-LP----DIVNYNTILAAFCKNGNADQALEIFEKLSDVG--CP----PNVSSYNTMFS 377 (534)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~~l~~ 377 (534)
+...|++++|...++++.+... .+ ...++..++..|...|+++.|+..++++.+.. .+ ....++..+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3444555555555554443200 01 12234444445555555555555554443220 00 01223444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChhhHHHHHH
Q 047017 378 ALWSSGDKIRALGMISEMLSK----GIE-PDEITYNSLISCLCRDGMVDEAVGLLVDMES-----TRFRPTVISYNIIIL 447 (534)
Q Consensus 378 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~ 447 (534)
+|...|++++|...+.+..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....++..++.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHH
Confidence 555555555555555444431 000 0112344444455555555555555544443 21 111334444455
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 047017 448 GFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 448 ~~~~~g~~~~A~~~~~~~~~ 467 (534)
++...|++++|...++++++
T Consensus 270 ~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-11 Score=113.21 Aligned_cols=234 Identities=12% Similarity=0.022 Sum_probs=132.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCC-CC----CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHH
Q 047017 146 IMIGSLCSRGMIESAFKVFDQLLRDNC-KP----TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220 (534)
Q Consensus 146 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 220 (534)
.....+...|++++|...|+++.+... .+ ...++..++.+|...|+++.|...+.+. +.++.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a-----------l~~~~-- 172 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA-----------LDIYQ-- 172 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHH--
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-----------HHHHH--
Confidence 445566788888888888888875411 11 2356778888899999999998888765 22221
Q ss_pred HHcCC-C-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHH-
Q 047017 221 ESRGC-Q-PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG----LE-PNVVTYSILISSLCRDGKTEDAVDVLRAAKE- 292 (534)
Q Consensus 221 ~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 292 (534)
..+. . ....+++.+..++...|++++|...+++..... .. ....++..+..+|...|++++|...+++..+
T Consensus 173 -~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 173 -NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp -TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1110 1 124567788888888999999988888776531 11 1123455666667777777777777766655
Q ss_pred ----CCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHh
Q 047017 293 ----KGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGC----LPDIVNYNTILAAFCKNGN---ADQALEIFEKLS 361 (534)
Q Consensus 293 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~ 361 (534)
.. +....++..++.++...|++++|...+++..+... +.....+..+...+...++ ..+|+..+++..
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 22 11244555566666666666666666666554311 1112233334444444444 444444444321
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 362 DVGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396 (534)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 396 (534)
. .+.....+..++..|...|++++|...++++.
T Consensus 331 ~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 L--HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 01122233444455555555555555554443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-12 Score=109.05 Aligned_cols=213 Identities=13% Similarity=0.071 Sum_probs=131.9
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC--CCCHhhH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPD---IVNYNTILAAFCKNGNADQALEIFEKLSDVGC--PPNVSSY 372 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 372 (534)
+...+..++..+...|++++|...|+.+++.. +.+ ...+..++.+|...|++++|+..|+++.+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555566666666666666666666542 222 44555566666666666666666666655420 1113344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047017 373 NTMFSALWS--------SGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYN 443 (534)
Q Consensus 373 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 443 (534)
..+..++.. .|++++|+..|+++.+. .|+ ......+...... ...+ ...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~-------~~~~-----------~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIREL-------RAKL-----------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHH-------HHHH-----------HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHH-------HHHH-----------HHHHH
Confidence 455555555 56666666666665553 122 1111111100000 0000 01135
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCch---
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCKP--NETTYVLLIEGIGYG----------GWRAEAMELANALVSMHAISR--- 508 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--- 508 (534)
.+..+|...|++++|+..++++++..+.. ....+..++.++... |++++|...++++++..|.++
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 67888999999999999999999864332 345777888888866 899999999999999999886
Q ss_pred HHHHHHHhhcchHHHHHHhhhhh
Q 047017 509 DTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 509 ~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.+...+..++...+++++...+.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHh
Confidence 56777888888899988877654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.3e-12 Score=107.74 Aligned_cols=191 Identities=8% Similarity=-0.049 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 332 PDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
.++..+...+..+...|++++|+..|+++.+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35567777777777888888888888877776522666666667777777888888888887777652 22456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 047017 412 SCLCRDGMVDEAVGLLVDMESTRFRPTV-------ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN---ETTYVLLI 481 (534)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 481 (534)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..++++++. .|+ ...+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 77777788888888877777642 2233 34666667777777777777777777765 233 45555666
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 482 EGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.++... +...++++....+..+..+... .....+.|++|...++|
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~ 205 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGE 205 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 665433 3344556666655554443322 23345666777766543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-11 Score=108.27 Aligned_cols=211 Identities=11% Similarity=0.020 Sum_probs=133.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC---CC--CHhhHHHHHH
Q 047017 308 AYCKDGRLDLAIEFLDYMISD----GCLPD-IVNYNTILAAFCKNGNADQALEIFEKLSDVGC---PP--NVSSYNTMFS 377 (534)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~ 377 (534)
.|...|++++|...|.+.... +.+++ ..++..+..+|...|++++|+..|++..+... .+ ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555554432 11111 34556666666666666666666666544310 00 1345677777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHH
Q 047017 378 ALWSS-GDKIRALGMISEMLSKGIE-PD----EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVI------SYNII 445 (534)
Q Consensus 378 ~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l 445 (534)
+|... |++++|+..+++..+.... .+ ..++..+...+...|++++|...+++..+........ .|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888887753100 01 3467788888889999999999999888764332221 46677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHH--ccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKP-N---ETTYVLLIEGIG--YGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
..++...|++++|...+++.++..+.. + ...+..++.++. ..+++++|+..|+++...+|.....+.++.+.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 788888999999999999887642211 1 113444556664 567899999999888888777766666665544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-10 Score=98.44 Aligned_cols=252 Identities=12% Similarity=0.025 Sum_probs=173.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
+-..-.|++..++.-.. +.+.........-+.+++...|++... ....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 34455788888887332 222121223334455778788877642 112233333333333 33322
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 317 LAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC-PPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
+...++++...+ .++...+..++.++...|++++|++++.+....+. ..+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677888777654 45666667888999999999999999999877652 246778888899999999999999999999
Q ss_pred HHCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 396 LSKGIEP-----DEITYNSLISC--LCRDG--MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 396 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
.+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 874 56 34555566655 33334 899999999998765 3442333344448889999999999999776
Q ss_pred HcC-----C----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 467 EKG-----C----KPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 467 ~~~-----~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
+.. . +.++.++..++......|+ +|.++++++.+..|.+|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 531 0 2366777677777777887 899999999999999985544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-11 Score=108.57 Aligned_cols=230 Identities=12% Similarity=0.006 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHCCCCCCHhcHHHHHHHHHhc--C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 047017 282 DAVDVLRAAKEKGLTPDAYSYDPLISAYCKD--G-RLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFE 358 (534)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 358 (534)
+|.+++.+..+. .+++...+ . +.+. + ++++|...+.++ +..|...|++++|...|+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 567777777765 22222222 2 2233 2 488888888776 446778999999999999
Q ss_pred HHhhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHH
Q 047017 359 KLSDV----GCPPN-VSSYNTMFSALWSSGDKIRALGMISEMLSKGI---EP--DEITYNSLISCLCRD-GMVDEAVGLL 427 (534)
Q Consensus 359 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~ 427 (534)
++.+. +-+++ ..++..+..+|...|++++|+..+++..+... .+ ...++..+..+|... |++++|...+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 88654 21111 46888999999999999999999998875310 11 135788899999996 9999999999
Q ss_pred HHHHhCCCCC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHH
Q 047017 428 VDMESTRFRP-T----VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNE------TTYVLLIEGIGYGGWRAEAMEL 496 (534)
Q Consensus 428 ~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~ 496 (534)
++..+..... + ..++..+...+...|++++|+..++++++..+.... ..+..++.++...|++++|+..
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987641111 1 356888999999999999999999999986543322 2567788899999999999999
Q ss_pred HHHHHHcCCCchHH-----HHHHHhhcc--hHHHHHHhhhhhc
Q 047017 497 ANALVSMHAISRDT-----FKRLNRTFP--LLDVYKEISHLAT 532 (534)
Q Consensus 497 ~~~~~~~~~~~~~~-----~~~l~~~~~--~~~~~~~~~~~~~ 532 (534)
+++.++..|..... +..++..+. ..++|+++...+.
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 99999988875542 444555554 4567888877664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=109.26 Aligned_cols=155 Identities=13% Similarity=0.039 Sum_probs=124.3
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCChhhHHHH
Q 047017 48 FRAGKFDESLYFIESMVAN-------GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG--------EPDVFAYNAL 112 (534)
Q Consensus 48 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l 112 (534)
...|++++|+.+|+++++. +.+....++..++..+...|++++|...++.+.... +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 223456788999999999999999999999988662 4456789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC------C-CCCCHhh
Q 047017 113 ISGFCKANQIELANKVLDRLRSR------GF-SPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD------N-CKPTVIT 178 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 178 (534)
+.++...|++++|.+.++++... .. +....++..+..+|...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 11 223667888999999999999999999998875 1 1334567
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 179 YTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 179 ~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+..++.+|...|++++|...++++
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999999876
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-11 Score=120.58 Aligned_cols=171 Identities=11% Similarity=-0.074 Sum_probs=111.0
Q ss_pred HhCCCHHHHHHHHHHHh--------hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 345 CKNGNADQALEIFEKLS--------DVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR 416 (534)
Q Consensus 345 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 416 (534)
...|++++|++.++++. +.. |.+...+..+..++...|++++|+..++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45666777777777666 332 4555666666667777777777777777666542 3345666666666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047017 417 DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMEL 496 (534)
Q Consensus 417 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 496 (534)
.|++++|...|+++.+.. +.+...+..+..++...|++++ +..|+++++.++. +...+..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766542 2245566666667777777777 7777777665432 556666677777777777777777
Q ss_pred HHHHHHcCCCchHHHHHHHhhcch
Q 047017 497 ANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
|+++++.+|....++..++.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 777777777777777777766644
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-11 Score=107.98 Aligned_cols=229 Identities=15% Similarity=0.051 Sum_probs=159.4
Q ss_pred HHhCCChhHHHHHHHHHHHC-------CCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHH
Q 047017 274 LCRDGKTEDAVDVLRAAKEK-------GLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD------GC-LPDIVNYNT 339 (534)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 339 (534)
....|++++|+..+++..+. ..+....++..+...|...|++++|...++++.+. +. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34678888888888877652 21224567788899999999999999999998764 21 223567888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHH
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVG-------CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK------GIEP-DEI 405 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~ 405 (534)
++..|...|++++|...++++.+.. .+....++..+...+...|++++|...++++.+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999987641 1334567888899999999999999999998864 1122 346
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-ChhhHHHHHHHHHhcCChHHHHH------HHHHHHHcCCC
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMEST-------RFRP-TVISYNIIILGFCKTRRINESIE------VLAAMFEKGCK 471 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~ 471 (534)
++..+..++...|++++|...++++.+. ...+ ....|..+...+...+....+.. .++.... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7888899999999999999999988653 1122 23344444444444333332222 2221111 111
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 472 PNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
....++..++..|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23456778899999999999999999998864
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-09 Score=99.58 Aligned_cols=374 Identities=11% Similarity=-0.024 Sum_probs=164.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC-HHHHHHHHHH
Q 047017 53 FDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ-IELANKVLDR 131 (534)
Q Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~ 131 (534)
++.|+.+|+.++.. -|. |+++.+..+|+..... .|+...|...+....+.++ .+....+|+.
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 56666666666543 122 5667777777776664 3466666666666665553 3445556665
Q ss_pred HHhC-CCC-CChhhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc
Q 047017 132 LRSR-GFS-PDVVTYNIMIGSLCS----RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC 205 (534)
Q Consensus 132 ~~~~-~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 205 (534)
+... |.. .+...|...+..+.. .++.+.+..+|++++......-...|...... ........+.+++...
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~--- 149 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT--- 149 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH---
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH---
Confidence 5543 322 245566666554432 34566677777777653211111122222111 1111222233322221
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 047017 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG--K-----WEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG 278 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (534)
.+.+..|..++..+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+...|
T Consensus 150 -~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 150 -LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 1122222322222221100012234444333322211 0 234566777766643 334666777777777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHh
Q 047017 279 KTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG---------C---LPDIVNYNTILAAFCK 346 (534)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~ 346 (534)
+.+.|..+++++... +.+...+. .|....+.++. ++.+.+.- . ......|...+....+
T Consensus 228 ~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp CHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 777777777777776 22222111 12221111111 12211110 0 0011234444444444
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047017 347 NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG-DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVG 425 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 425 (534)
.++.+.|..+|+.+ ... +.+...|...+..-...+ +.+.|..+|+...+.. +.+...+..++......|+.+.|..
T Consensus 299 ~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555566666555 211 122233322222222222 4555555555555431 1123333444444455555555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 426 LLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555541 123444444444444555555555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-09 Score=98.54 Aligned_cols=379 Identities=8% Similarity=-0.039 Sum_probs=238.7
Q ss_pred hcC-CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HHHHH
Q 047017 84 QER-KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM-IESAF 161 (534)
Q Consensus 84 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~ 161 (534)
+.| +++.|+.+|+.+...-|. |+++.+..+|++.+.. .|+...|...+....+.++ .+...
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 446 478888888888765433 8899999999999986 6799999998888777664 46677
Q ss_pred HHHHHHHhC-CC-CCCHhhHHHHHHHHH----hcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047017 162 KVFDQLLRD-NC-KPTVITYTILIQATM----LEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNML 235 (534)
Q Consensus 162 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 235 (534)
.+|+.++.. |. +.+...|...+..+. ..|+.+.+..+|+++......+.+.-+..+..+... .+..+...+
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~---~~~~~~~~~ 145 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE---LNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---HCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH---hccccHHHH
Confidence 888887764 32 446677777776643 245677888888887444444455555555444432 122222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC--C-----hhHHHHHHHHHHHCCCCCCHhcHHHHHHH
Q 047017 236 LRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG--K-----TEDAVDVLRAAKEKGLTPDAYSYDPLISA 308 (534)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (534)
+... .+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++.... +.++..|...+..
T Consensus 146 ~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 146 VGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEY 222 (493)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHH
T ss_pred HHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 2221 2344555555555443210113345555555432211 1 345678898888753 4467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC---C------C---CCCHhhHHHHH
Q 047017 309 YCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDV---G------C---PPNVSSYNTMF 376 (534)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~------~---~~~~~~~~~l~ 376 (534)
+.+.|+.+.|..+++++... |.+...+.. |....+.++. ++.+... . . +.....|...+
T Consensus 223 ~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 88999999999999999987 444433332 2221111221 2222211 0 0 11124566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR-DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRI 455 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 455 (534)
....+.++.+.|..+|..+ .. ...+...|...+..-.. .++.+.|..+|+...+.- +.+...|...++.....|+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 7777788899999999998 32 22344555433333223 336999999999988752 22455666777777889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 456 NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999972 2567788888777778999999999988886
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-10 Score=97.68 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH----------------HHHHHHhcCCHhHHHHHHHHHHHc
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTK----------------LIKKFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 101 (534)
..+......+...|++++|+..|+++++.. |.+...+.. ++.++...|++++|+..|+.+.+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445566778889999999999999999875 456777888 999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCCHhhH
Q 047017 102 GEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM--IESAFKVFDQLLRDNCKPTVITY 179 (534)
Q Consensus 102 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~ 179 (534)
+|.+..++..+..++...|++++|.+.|+++.+.. +.+..+|..+..+|...|+ ...+...+..+.. ..|....+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 99999999999999999999999999999999873 3367888888888866654 3455666666542 23333445
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHh
Q 047017 180 TILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 180 ~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+..++...|++++|+..|+++
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 55666777788888888888876
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-10 Score=100.53 Aligned_cols=184 Identities=9% Similarity=0.062 Sum_probs=118.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD---VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAY 109 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 109 (534)
+...+..+...+.+.|++++|+..|+++++.. |.+ ..++..++.++...|++++|+..|+.+....|. ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566677777777777777777777777653 333 566777777777777777777777777776532 24556
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 110 NALISGFCK--------ANQIELANKVLDRLRSRGFSPDV-VTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 110 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
..+..++.. .|++++|...|+++.+. .|+. .....+.. +..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 667777777 77777777777777665 3332 22211111 1111000 011245
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhc----------CCHHHH
Q 047017 181 ILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP--DVISYNMLLRTLLNM----------GKWEEG 248 (534)
Q Consensus 181 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a 248 (534)
.++.+|...|++++|+..|+++ ....... ....+..+..++... |++++|
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~------------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAV------------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH------------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 6777888888888888888776 4332111 245677777788766 888999
Q ss_pred HHHHHHHHHC
Q 047017 249 EKLMTEMISR 258 (534)
Q Consensus 249 ~~~~~~~~~~ 258 (534)
...|+.+++.
T Consensus 215 ~~~~~~~~~~ 224 (261)
T 3qky_A 215 VELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988876
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-10 Score=96.91 Aligned_cols=171 Identities=12% Similarity=0.093 Sum_probs=116.6
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA----------------LISGFCKANQIELANKVLDRLRS 134 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~ 134 (534)
+...+...+..+...|++++|+..|+.+...+|.+..++.. +..++.+.|++++|...|++..+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455666777889999999999999999988878888877 78888888888888888888777
Q ss_pred CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh--HHHHHHHHhcccccCChHH
Q 047017 135 RGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTD--KAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 135 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~ 212 (534)
.. +.+...+..+..++...|++++|...|+++++.. |.+..++..++.+|...|+.+ .+...+..+
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~---------- 150 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL---------- 150 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------
Confidence 63 3356777788888888888888888888887765 566777777777765554322 223333222
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047017 213 AFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV 265 (534)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 265 (534)
. ...|....+.....++...|++++|+..|++.++. .|+..
T Consensus 151 --------~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 151 --------S--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred --------h--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 1 11222223344455566667777777777777765 44543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=96.80 Aligned_cols=146 Identities=11% Similarity=0.045 Sum_probs=121.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
|...+...|++++|+..++.+.... +.+...+..++..|...|++++|+..|+++.+.+|.+..+|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3445567789999999999987653 445667888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH-HHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKV-FDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++|...|++..+.. +-+...|..+..+|.+.|++++|.+. ++++.+.. |.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999999873 33678899999999999999876665 58888775 6677888888877777664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.28 E-value=4.8e-10 Score=97.49 Aligned_cols=237 Identities=11% Similarity=-0.039 Sum_probs=166.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 047017 271 ISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (534)
++-..-.|.+..++.-.. +............+.++|...|+++.. ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 344556899988887333 222222333444556888888887642 11234444555444443 322
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPDEITYNSLISCLCRDGMVDEAVGLLVD 429 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 429 (534)
|+..+++....+ +++..++..++.++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788888887765 56666777889999999999999999999877643 23667888889999999999999999999
Q ss_pred HHhCCCCC-----ChhhHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 430 MESTRFRP-----TVISYNIIILG--FCKTR--RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 430 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
|.+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9874 55 34555566655 33344 899999999999765 355333344445899999999999999988
Q ss_pred HHc----------CCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 501 VSM----------HAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 501 ~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.+. +|.+++++..++.+....|+ ++.+++
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHH
Confidence 776 47889999777767666665 555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.1e-09 Score=90.89 Aligned_cols=231 Identities=9% Similarity=0.038 Sum_probs=156.4
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 40 FMKLIKRSFRAGKF-DESLYFIESMVANGCKPDVVMCTKLIKKFFQER--KSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 40 ~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
....+++..+.|.+ ++|+.+++.++..+ |.+..+|+.-..++...| ++++++..++.+...+|.+..+|+.-..++
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 34455556667766 58999999999876 667889999999999999 999999999999999999999998877777
Q ss_pred ----Hhc---CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--HHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 047017 117 ----CKA---NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE--SAFKVFDQLLRDNCKPTVITYTILIQATM 187 (534)
Q Consensus 117 ----~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (534)
... +++++++++++++.+.. +.+..+|+.-..++.+.|.++ ++++.++++++.+ +.|...|+.-..+..
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 555 78999999999999874 447888888888888888888 9999999999886 677778877666655
Q ss_pred hcCC------HhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-
Q 047017 188 LEGQ------TDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEE-GEKLMTEMISRG- 259 (534)
Q Consensus 188 ~~g~------~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~- 259 (534)
..|. ++++++.+ +.+.... +-|...|+.+...+.+.|+... +..+..++...+
T Consensus 192 ~l~~~~~~~~~~eEl~~~------------------~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYV------------------KDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp SSGGGCCHHHHHHHHHHH------------------HHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred hccccchhhhHHHHHHHH------------------HHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 5443 33333333 2223332 2355555555555555554222 233333333221
Q ss_pred -CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047017 260 -LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 260 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (534)
-..+...+..++..+.+.|+.++|.++++.+.+
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 012334444444555555555555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-10 Score=86.86 Aligned_cols=130 Identities=10% Similarity=0.177 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
.|..+...+...|++++|+.+++++.+.+ +.+...+..++..+...|++++|...++.+....+.+...+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56777888888899999999999888764 55677888888888888999999999998888878788888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 119 ANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
.|++++|.+.++++.... +.+...+..++.++...|++++|...++++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999888887763 335677788888888889999998888888765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.4e-09 Score=91.12 Aligned_cols=234 Identities=10% Similarity=0.015 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhC---CCHH
Q 047017 281 EDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDG--RLDLAIEFLDYMISDGCLPDIVNYNTILAAF----CKN---GNAD 351 (534)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 351 (534)
++|+.+++.++..+. -+...++.-..++...+ ++++++.+++.++..+ +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 467777777666532 24445555556666666 7777777777777654 33455555544444 444 6677
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 047017 352 QALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKI--RALGMISEMLSKGIEPDEITYNSLISCLCRDGM------VDEA 423 (534)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 423 (534)
+++.+++.+.+.. |.+..+|..-.-.+...+.++ ++++.++++.+.+ +-+...|+.........|. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 7778887777764 667777777777777777777 7788888877754 2356666666666666665 7888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 424 VGLLVDMESTRFRPTVISYNIIILGFCKTRRINE-SIEVLAAMFEKG--CKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
++.+++++... +-|...|+.+...+...|+..+ +..+..++.+.+ -..+...+..++.++.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888887764 3377788888878877777444 455666666543 1236778888899999999999999999999
Q ss_pred HH-cCCCchHHHHHHHhhcc
Q 047017 501 VS-MHAISRDTFKRLNRTFP 519 (534)
Q Consensus 501 ~~-~~~~~~~~~~~l~~~~~ 519 (534)
.+ .+|.....|...++.+.
T Consensus 285 ~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp HHTTCGGGHHHHHHHHHTCC
T ss_pred HhccChHHHHHHHHHHhhcc
Confidence 97 69988888887766543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=98.11 Aligned_cols=144 Identities=9% Similarity=-0.012 Sum_probs=108.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 453 (534)
|...+...|++++|+..+...... .| +...+..+..+|...|++++|.+.|++.++.. +.+..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344455667788888888877653 23 34456677888888899999999988888763 336778888888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH-HHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 454 RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAME-LANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 454 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
++++|+..|+++++.++. +..++..++..+.+.|++++|.+ +++++++.+|.++.++...++++...|
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 999999999999887533 67888888888988888877655 468999999999988888777766544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-10 Score=114.99 Aligned_cols=173 Identities=13% Similarity=0.017 Sum_probs=147.4
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 48 FRAGKFDESLYFIESMV--------ANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 48 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
...|++++|++.+++++ +.. +.+...+..++.++...|++++|+..|+.+.+.+|.+..+|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78999999999999998 543 567888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLL 199 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 199 (534)
|++++|.+.|+++.+.. +.+...|..+..++...|++++ .+.|+++++.+ +.+...+..+..++...|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999873 3367888999999999999999 99999999886 678889999999999999999999999
Q ss_pred HHhcccccCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCC
Q 047017 200 DEMGMCKKGMVGQAFQFVRSLESRGCQPD-VISYNMLLRTLLNMGK 244 (534)
Q Consensus 200 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 244 (534)
+++ .+ ..|+ ...+..+..++...++
T Consensus 558 ~~a------------------l~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEV------------------PP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTS------------------CT--TSTTHHHHHHHHHHHTC----
T ss_pred Hhh------------------cc--cCcccHHHHHHHHHHHHccCC
Confidence 987 22 2343 4566666666655444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.4e-10 Score=93.74 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=131.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh---hHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKP--DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF---AYN 110 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 110 (534)
++..+..+...+...|++++|+..|+++++..+.. ...++..++.++...|++++|+..|+.+.+..|.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45677788889999999999999999999864221 2467889999999999999999999999998866654 566
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCh-hhH-----------------HHHHHHHHcC
Q 047017 111 ALISGFCK------------------ANQIELANKVLDRLRSRGFSPDV-VTY-----------------NIMIGSLCSR 154 (534)
Q Consensus 111 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~-----------------~~l~~~~~~~ 154 (534)
.+..++.. .|++++|...|+++.+. .|+. ..+ ..+...|.+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666654 57899999999999987 4443 222 2456678899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 155 GMIESAFKVFDQLLRDNCKPTV---ITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
|++++|...|+++++.. |.+. ..+..++.+|.+.|++++|.+.++.+
T Consensus 161 ~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999999999874 3333 56888999999999999999988876
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-09 Score=84.88 Aligned_cols=128 Identities=11% Similarity=0.139 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLC 152 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (534)
.++..++..+...|++++|..+++.+....+.+..++..++..+...|++++|...++++...+ +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3577888999999999999999999999888889999999999999999999999999998764 346778889999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 153 SRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..|++++|.+.++++.... +.+..++..++.++...|++++|...++++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 9999999999999998875 567788899999999999999999988876
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-10 Score=94.00 Aligned_cols=162 Identities=10% Similarity=0.038 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH-H
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG-F 116 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~ 116 (534)
..+......+...|++++|+..|+++++.. |.+..++..++.++...|++++|+..++.+....| ++..+...... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 356778889999999999999999987764 66789999999999999999999999999988777 76555443323 2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHhHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP-TVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 195 (534)
...++...|...+++..+.. +.+...+..+..++...|++++|...|+++++....+ +...+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 23333445788899988762 3358889999999999999999999999999875322 356888999999999999999
Q ss_pred HHHHHHh
Q 047017 196 MKLLDEM 202 (534)
Q Consensus 196 ~~~~~~~ 202 (534)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988865
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-09 Score=89.47 Aligned_cols=176 Identities=13% Similarity=0.014 Sum_probs=96.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHHH
Q 047017 318 AIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG----DKIRALGMIS 393 (534)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 393 (534)
|+..|++..+.+ ++..+..+...|...+++++|+.+|++..+.+ ++..+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555443 44555555555555556666666665555543 44455555555554 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHH
Q 047017 394 EMLSKGIEPDEITYNSLISCLCR----DGMVDEAVGLLVDMESTRFR-PTVISYNIIILGFCK----TRRINESIEVLAA 464 (534)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 464 (534)
+..+.+ +...+..+...|.. .+++++|..+|++..+.+.. .....+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655533 34445555555554 55666666666666554321 014455556666655 5666667777666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHcCC
Q 047017 465 MFEKGCKPNETTYVLLIEGIGYG-G-----WRAEAMELANALVSMHA 505 (534)
Q Consensus 465 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 505 (534)
..+. ..+...+..|...|... | ++++|..+|+++.+.+.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6665 12333455555555432 2 67777777777766654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-10 Score=84.08 Aligned_cols=117 Identities=8% Similarity=0.013 Sum_probs=103.1
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047017 400 IEPD-EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYV 478 (534)
Q Consensus 400 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 478 (534)
+.|+ ...+...+..+.+.|++++|.+.|++.++.. +.+...|..+..++...|++++|+..++++++.++ .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHH
Confidence 3444 3567788899999999999999999998763 34688899999999999999999999999999764 3788899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
.++.++...|++++|++.|+++++.+|.+++++..+++++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988775
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-09 Score=88.97 Aligned_cols=177 Identities=14% Similarity=0.053 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHH
Q 047017 282 DAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNG----NADQALEIF 357 (534)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 357 (534)
+|...|++..+.| ++..+..+...|...+++++|+..|++..+.+ ++..+..+...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666653 56666677777777777777777777777654 55666666666666 5 677777777
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 047017 358 EKLSDVGCPPNVSSYNTMFSALWS----SGDKIRALGMISEMLSKGIE-PDEITYNSLISCLCR----DGMVDEAVGLLV 428 (534)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 428 (534)
++..+.+ ++..+..+...|.. .+++++|+..|++..+.+.. .....+..|..+|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 56666677777765 67777888888777765421 125666677777776 677888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCC
Q 047017 429 DMESTRFRPTVISYNIIILGFCKT-R-----RINESIEVLAAMFEKGC 470 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 470 (534)
+..+. ..+...+..|...|... | ++++|..++++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87765 23444566666666543 2 78888888888877763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5e-10 Score=99.30 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=133.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+..+...+...|++++|+..|+++++.. |.+..++..++.++...|++++|...++.+....|............+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3456677788889999999999999998875 667889999999999999999999999999887664444444445557
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHhH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT--VITYTILIQATMLEGQTDK 194 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 194 (534)
...++.+.|.+.+++..... +.+...+..+...+...|++++|...|.++++.. |.+ ...+..++.++...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCCc
Confidence 77888888999999888773 4467888899999999999999999999999875 333 6688899999999999999
Q ss_pred HHHHHHHh
Q 047017 195 AMKLLDEM 202 (534)
Q Consensus 195 a~~~~~~~ 202 (534)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-10 Score=100.93 Aligned_cols=167 Identities=10% Similarity=0.001 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HH
Q 047017 331 LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITY-NS 409 (534)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 409 (534)
+.+...+..+...+...|++++|+..|+++.+.. |.+...+..++..+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344555666666667777777777777766654 556666666666777777777777777666553 2333222 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 047017 410 LISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKP-NETTYVLLIEGIGYGG 488 (534)
Q Consensus 410 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 488 (534)
....+...++.++|...+++..... +.+...+..+...+...|++++|...+.++++..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223445555666666666665542 2245556666666666666666666666666653321 1455566666666666
Q ss_pred CHHHHHHHHHHHH
Q 047017 489 WRAEAMELANALV 501 (534)
Q Consensus 489 ~~~~A~~~~~~~~ 501 (534)
+.++|...|++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666666666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-10 Score=92.06 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS-L 151 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 151 (534)
..+...+..+...|++++|...|+.+.+.+|.+..++..+..++...|++++|...++++... .|+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 455667777788888888888888887777788888888888888888888888888877655 3343332222211 1
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC-CHh
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP-DVI 230 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 230 (534)
...+....|...+++..+.. |.+...+..+..++...|++++|...|+++ ......+ +..
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------l~~~p~~~~~~ 145 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNI------------------LKVNLGAQDGE 145 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTCTTTTTTH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HHhCcccChHH
Confidence 11122233555666665543 444555566666666666666655555544 2222111 233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
.+..+..++...|+.++|...|++.+
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45555555555555555555555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-09 Score=88.91 Aligned_cols=191 Identities=10% Similarity=0.032 Sum_probs=117.5
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh---hH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL-P-DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVS---SY 372 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~ 372 (534)
+...+..++..+...|++++|...|+++++.... + ....+..++.++...|++++|+..|+++.+.. |.+.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 3445666777888889999999999988875311 1 13567778888889999999999999888763 33332 44
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhh----------
Q 047017 373 NTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT-VIS---------- 441 (534)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~---------- 441 (534)
..+..++...+.. .+ ..+..+...+...|++++|...|+++++. .|+ ...
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHH
Confidence 4455555432100 00 00111112222334444555555544443 111 111
Q ss_pred -------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 442 -------YNIIILGFCKTRRINESIEVLAAMFEKGCKPN--ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 442 -------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
...+...+...|++++|+..++++++..+... ...+..++.++.+.|++++|++.++++...+|.+.
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12456677888889999998888888643311 25677788888888999999998888888877654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=107.57 Aligned_cols=152 Identities=9% Similarity=-0.001 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 313 GRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMI 392 (534)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 392 (534)
|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. |.+...+..+..++...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44455555555554432 2234445555555555555555555555555443 334445555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 047017 393 SEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT---RRINESIEVLAAMFEK 468 (534)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 468 (534)
++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.++++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5554431 2234444444555555555555555555544431 11334444444444444 5555555555555443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-09 Score=106.85 Aligned_cols=150 Identities=10% Similarity=-0.075 Sum_probs=94.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 50 AGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVL 129 (534)
Q Consensus 50 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 129 (534)
.|++++|+..|+++.+.. +.+...+..++..+...|++++|...++++.+..|.+..++..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777776654 4456777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCHhHHHHHHHHh
Q 047017 130 DRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE---GQTDKAMKLLDEM 202 (534)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~ 202 (534)
++..+.. +.+...+..+..+|...|++++|.+.|+++.+.. +.+...+..++.++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7776652 2346667777777777777777777777777664 45566677777777777 7777777777665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.5e-10 Score=99.37 Aligned_cols=226 Identities=12% Similarity=0.008 Sum_probs=151.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHH
Q 047017 241 NMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR-DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAI 319 (534)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (534)
..|++++|.+++++..+... . .+.. .++++.|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 35678888888887765421 1 1223 57788888777664 45677889999999
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHH
Q 047017 320 EFLDYMISD----GCLP-DIVNYNTILAAFCKNGNADQALEIFEKLSDV----GCPP-NVSSYNTMFSALWSSGDKIRAL 389 (534)
Q Consensus 320 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~ 389 (534)
..+.++... +... -..++..+..+|...|++++|+..|++..+. |-+. ...++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 988887653 1111 1346778888898999999999999987553 2111 13467778888877 9999999
Q ss_pred HHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChHHHH
Q 047017 390 GMISEMLSKGI---EP--DEITYNSLISCLCRDGMVDEAVGLLVDMEST----RFRPT-VISYNIIILGFCKTRRINESI 459 (534)
Q Consensus 390 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~ 459 (534)
..+++..+... .+ ...++..+..++...|++++|...|++..+. +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99988875311 11 1356778888888999999999999888653 11111 225566667777789999999
Q ss_pred HHHHHHHHcCCCC-C---HHHHHHHHHHHHccCCHHHHHH
Q 047017 460 EVLAAMFEKGCKP-N---ETTYVLLIEGIGYGGWRAEAME 495 (534)
Q Consensus 460 ~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~ 495 (534)
..+++.+ ..+.. + ......++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9998887 43211 1 12334455544 5677766655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-09 Score=80.44 Aligned_cols=95 Identities=6% Similarity=0.053 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+......+.+.|++++|++.|+++++.. |.+..+|..++.++...|++++|+..|+.+.+.+|.+..+|..++.++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444445555555555555555554443 334445555555555555555555555555554444555555555555555
Q ss_pred CCHHHHHHHHHHHHhC
Q 047017 120 NQIELANKVLDRLRSR 135 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~ 135 (534)
|++++|.+.|++..+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5555555555554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-09 Score=92.54 Aligned_cols=224 Identities=8% Similarity=0.027 Sum_probs=158.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHH
Q 047017 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLN-MGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
..|++++|..++++..+.... .+.. .+++++|...|..+ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 467888999999887764221 1233 57888888888765 44677889999999
Q ss_pred HHHHHHHHCCCC-CC----HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhCCCHHHHH
Q 047017 285 DVLRAAKEKGLT-PD----AYSYDPLISAYCKDGRLDLAIEFLDYMISDG--C-LPD--IVNYNTILAAFCKNGNADQAL 354 (534)
Q Consensus 285 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~~~~~~A~ 354 (534)
..+.++.+.... .+ ...+..+..+|...|++++|+..+++.++.. . .+. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887753110 01 3467888889999999999999999887641 0 111 3567788888888 9999999
Q ss_pred HHHHHHhhCCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 047017 355 EIFEKLSDVGCPP-----NVSSYNTMFSALWSSGDKIRALGMISEMLSK----GIEPD-EITYNSLISCLCRDGMVDEAV 424 (534)
Q Consensus 355 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~ 424 (534)
..|++..+..... ...++..+...+...|++++|+..+++..+. +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999987642111 1457788899999999999999999998863 21111 235666777788889999999
Q ss_pred HHHHHHHhCCCCCCh------hhHHHHHHHHHhcCChHHHHH
Q 047017 425 GLLVDMESTRFRPTV------ISYNIIILGFCKTRRINESIE 460 (534)
Q Consensus 425 ~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 460 (534)
..|++.. . .|+. .....++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999988 4 2321 1233445544 5677665555
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=78.85 Aligned_cols=121 Identities=7% Similarity=-0.009 Sum_probs=95.2
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
...+...|..+...+...|++++|+..|+++.... +.+..++..++.++...|++++|...++.+....+.+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34567778888888999999999999999988764 55778888888888888999999999998888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG 155 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 155 (534)
..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 888888888888888888887652 223455555655555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.6e-08 Score=83.11 Aligned_cols=128 Identities=9% Similarity=-0.027 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
.+..+...+...|++++|+..|+++. .++..++..++.++...|++++|...|+.+....|.+..++..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 45677888899999999999998874 56888999999999999999999999999999989999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 119 ANQIELANKVLDRLRSRGFSPDV----------------VTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
.|++++|.+.|+++.+.. +.+. ..+..+..++...|++++|...|+++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999998862 1122 677888899999999999999999998764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.2e-07 Score=80.78 Aligned_cols=189 Identities=7% Similarity=0.007 Sum_probs=139.8
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 41 MKLIKRSFRAGK-FDESLYFIESMVANGCKPDVVMCTKLIKKFFQER-KSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 41 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
...++...+.+. .++|+++++.++..+ +.+..+|+.-..++...| .+++++..++.+...+|.+..+|+.-..++.+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 344555555554 468999999999986 667888999888888888 59999999999999999999999998888888
Q ss_pred c-C-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 047017 119 A-N-QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE--------SAFKVFDQLLRDNCKPTVITYTILIQATML 188 (534)
Q Consensus 119 ~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (534)
. + ++++++++++++.+.. +.|..+|+.-..++.+.|.++ ++++.++++++.+ +.|...|+....++.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 7 7 8999999999999874 347778877666666666666 8999999999886 7788889888887777
Q ss_pred cCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 047017 189 EGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGK 244 (534)
Q Consensus 189 ~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (534)
.+.... ....++++++.+++..... +-|...|+.+-..+.+.|.
T Consensus 214 l~~~~~-----------~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAET-----------SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCC-----------CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccccc-----------chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 665110 0001233344444445543 3466777766666655554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.8e-09 Score=81.30 Aligned_cols=126 Identities=11% Similarity=-0.004 Sum_probs=93.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
..+...+...+...+-+.+++. .. |.+...+..++..+...|++++|...|+.+...+|.++..|..+..++
T Consensus 9 ~~~~~~l~~~~~~~~~l~~al~-------l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDINA-------IP-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY 80 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGGCC-------SC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHhC-------CC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444555555555555444432 22 445667788888888888888888888888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
...|++++|.+.|+++.+.. +.+...|..+..+|...|++++|...|+++++..
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888887763 3357778888888888888888888888888763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.98 E-value=6.7e-09 Score=91.62 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=61.0
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
+...+..++..+...|++++|...|++++... +.+...+..+..+|...|++++|+..++++.+.. |.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666666553 3355566666666666666666666666666653 455566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047017 378 ALWSSGDKIRALGMISEMLS 397 (534)
Q Consensus 378 ~~~~~~~~~~a~~~~~~~~~ 397 (534)
++...|++++|...++++.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-08 Score=80.50 Aligned_cols=95 Identities=11% Similarity=0.080 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK 451 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 451 (534)
+..++..+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..++.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444455555555555555544431 2234444444444555555555555555444431 1233444444444555
Q ss_pred cCChHHHHHHHHHHHHc
Q 047017 452 TRRINESIEVLAAMFEK 468 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~ 468 (534)
.|++++|...++++++.
T Consensus 94 ~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 94 LGKFRAALRDYETVVKV 110 (166)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 55555555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-09 Score=82.92 Aligned_cols=122 Identities=11% Similarity=-0.114 Sum_probs=93.9
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 391 MISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 391 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
.++++... .| +...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|+..++++++.+
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 33 44566777888888999999999998887753 3367788888889999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 470 CKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 470 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
+. +...+..++.++...|++++|+..|+++++..|.++.......+
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 33 66778888999999999999999999999988877755443333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-08 Score=80.47 Aligned_cols=130 Identities=7% Similarity=0.033 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+...|++++|...|+++++.. +.+..++..++.++...|++++|...++.+....|.+..++..++.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4456777777888888888888888877764 556777778888888888888888888888877777777888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHcCCCHHHHHHHHHHHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYN--IMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
...|++++|.+.|+++.+.. +.+...+. ..+..+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888877652 22344443 33333666777777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=78.33 Aligned_cols=119 Identities=7% Similarity=-0.030 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLI 481 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 481 (534)
.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++++... .+...+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 345677888888889999999999999888763 33677888888899999999999999999988753 3678888999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 482 EGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.++...|++++|.+.++++++..|.++..+..++.++...+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999899998888887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-08 Score=75.86 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|..+++++.+..+ .+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4667777888888899999999998887653 33567788888889999999999999999988653 367788889999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 484 IGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
+...|++++|..+++++++..|..+..+..++.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 99999999999999999999999998888888776543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-08 Score=77.71 Aligned_cols=120 Identities=7% Similarity=-0.068 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047017 403 DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIE 482 (534)
Q Consensus 403 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 482 (534)
+...+..+...+...|++++|...+++..... +.+...+..++.++...|++++|...++++++..+ .+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 34567777788888899999999998887653 33677788888899999999999999999988753 36778888999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHH
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVY 524 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 524 (534)
.+...|++++|...++++++..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999888877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-07 Score=82.49 Aligned_cols=163 Identities=10% Similarity=0.007 Sum_probs=116.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVS------SYNTMFSALWSSGDKIRALGMISEMLSKGIE-PD----EITYN 408 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 408 (534)
.+..+...|++++|...+++..+.. +.++. .+..+...+...+++++|+..++++.+.... ++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4566777888888888888877642 21221 2234556666677888888888888864222 22 23678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMEST-----RFRP-TVISYNIIILGFCKTRRINESIEVLAAMFEK----GCKPN-ETTY 477 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~ 477 (534)
.++.+|...|++++|...++++.+. +..+ ...++..++.+|...|++++|+.+++++++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888899999999988887631 1111 2346778888999999999999999888763 22222 6778
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHc
Q 047017 478 VLLIEGIGYGG-WRAEAMELANALVSM 503 (534)
Q Consensus 478 ~~l~~~~~~~g-~~~~A~~~~~~~~~~ 503 (534)
..++.++...| ++++|.+.+++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999 469999999998874
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.6e-09 Score=88.43 Aligned_cols=188 Identities=7% Similarity=-0.109 Sum_probs=92.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHH-------HHHHHhcCCHhHHHHHHHHHHHcCCCC----------------
Q 047017 49 RAGKFDESLYFIESMVANGCKPDVVMCTKL-------IKKFFQERKSNKAVRVMEILEKYGEPD---------------- 105 (534)
Q Consensus 49 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 105 (534)
..+++..|++.|.++.+.. |.....|..+ ..++...++..++...+.......|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566666666666666654 4455666655 445555555555555554444422110
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--Hhh
Q 047017 106 -----VFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT--VIT 178 (534)
Q Consensus 106 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 178 (534)
......++..+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 112333455555566666666666555543 2322244444455556666666666665443321 111 124
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 179 YTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP--DVISYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 179 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
+..+..++...|++++|+..|++. ......| ..........++.+.|+.++|..+|+++.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a------------------~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEA------------------NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------------HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH------------------hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555555543 2111102 12234444455555555555555555555
Q ss_pred HC
Q 047017 257 SR 258 (534)
Q Consensus 257 ~~ 258 (534)
..
T Consensus 236 a~ 237 (282)
T 4f3v_A 236 TT 237 (282)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=7.2e-09 Score=81.34 Aligned_cols=110 Identities=13% Similarity=-0.081 Sum_probs=76.1
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047017 59 FIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFS 138 (534)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 138 (534)
.|++++... +.+...+..++..+...|++++|...|+.+...+|.+...|..+..++...|++++|.+.|+++.... +
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 344444433 33555666677777777777777777777777777777777777777777777777777777776652 2
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 139 PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 139 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
.+...+..+..+|...|++++|...|++.++.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-08 Score=79.97 Aligned_cols=98 Identities=9% Similarity=0.040 Sum_probs=73.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+..+...+.+.|++++|+..|++++..+ |.+...|..++.++...|++++|+..|+.+...+|.++.+|..+..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3456666777777777777777777777765 556777777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 047017 117 CKANQIELANKVLDRLRSR 135 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~ 135 (534)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777766
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.2e-08 Score=80.88 Aligned_cols=128 Identities=11% Similarity=-0.020 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 336 NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLC 415 (534)
Q Consensus 336 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 415 (534)
.+..++..+...|++++|+..|+++. +|+...+..+..++...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556666777777777777777663 4466777777777777777777777777777652 335566777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTV----------------ISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
..|++++|...++++.+.... +. ..+..+..++...|++++|...++++++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777777665221 22 455666666777777777777777766653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-08 Score=90.04 Aligned_cols=87 Identities=11% Similarity=-0.097 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
..|..+..++...|++++|+..++++++..+ .+...+..++.+|...|++++|+..|+++++..|.++.++..++.++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4555666666666666666666666666542 255556666666666666666666666666666666666666666666
Q ss_pred hHHHHHHh
Q 047017 520 LLDVYKEI 527 (534)
Q Consensus 520 ~~~~~~~~ 527 (534)
..++++++
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-08 Score=87.38 Aligned_cols=199 Identities=6% Similarity=-0.067 Sum_probs=142.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhCCCHHHHHHHHHHHhhCCCCCC---------------
Q 047017 311 KDGRLDLAIEFLDYMISDGCLPDIVNYNTI-------LAAFCKNGNADQALEIFEKLSDVGCPPN--------------- 368 (534)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------- 368 (534)
..++...|.+.|.++.... +.....|..+ ...+...++..+++..++..... +|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5788888888888888764 3455666666 44555555555555555555442 111
Q ss_pred -------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--h
Q 047017 369 -------VSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--V 439 (534)
Q Consensus 369 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 439 (534)
......+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 223445677788899999999999888764 3443355666668889999999999998665431 111 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN--ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...+|. +.+...|..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 3677788899999999999999999985432243 346677888899999999999999999999998 777766643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-08 Score=75.97 Aligned_cols=114 Identities=13% Similarity=-0.031 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..++++++.++. +...+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4566777888889999999999999888763 336778888999999999999999999999987533 67888899999
Q ss_pred HHccCCHHHHHHHHHHHHHcC------CCchHHHHHHHhhcc
Q 047017 484 IGYGGWRAEAMELANALVSMH------AISRDTFKRLNRTFP 519 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~ 519 (534)
+...|++++|...++++++.+ |.++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999998 888888877776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-08 Score=81.83 Aligned_cols=123 Identities=9% Similarity=0.117 Sum_probs=105.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH-HHhcCCH--H
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG-FCKANQI--E 123 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 123 (534)
+...|++++|+..++++++.. +.+...+..++.++...|++++|...|+.+....|.+..++..++.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 456889999999999998875 66889999999999999999999999999999888899999999999 8899998 9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
+|...++++.+.. +.+...+..+..++...|++++|...|+++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998873 3357788899999999999999999999999875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.91 E-value=6.5e-09 Score=91.73 Aligned_cols=97 Identities=12% Similarity=-0.028 Sum_probs=52.6
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSL 151 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (534)
...+..++..+...|++++|+..|+.+....|.+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555442 22344555555555
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 047017 152 CSRGMIESAFKVFDQLLR 169 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~ 169 (534)
...|++++|...|+++.+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.1e-08 Score=77.22 Aligned_cols=119 Identities=8% Similarity=-0.160 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|+..++++++.++. +...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 4556667778888999999999999888753 336778888899999999999999999999987643 66778888999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHH
Q 047017 484 IGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVY 524 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 524 (534)
+...|++++|...|+++++..|.++.......++....+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999888776666555555444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-07 Score=80.40 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=124.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHH
Q 047017 77 KLIKKFFQERKSNKAVRVMEILEKYGEPDVF------AYNALISGFCKANQIELANKVLDRLRSRGFS-PD----VVTYN 145 (534)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 145 (534)
..+..+...|++++|..+++.+....+.++. .+..+...+...|++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788999999999999999886543333 2335677777888999999999999875322 22 23688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC-----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHH
Q 047017 146 IMIGSLCSRGMIESAFKVFDQLLRD-----NCKP-TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRS 219 (534)
Q Consensus 146 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~ 219 (534)
.+..+|...|++++|...|+++++. +..+ ...++..++.+|.+.|++++|...+++. +.+.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a-----------l~~~-- 226 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA-----------IEIS-- 226 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHH--
Confidence 9999999999999999999998842 1112 2347888999999999999999998875 2222
Q ss_pred HHHcCCCCC-HhhHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 047017 220 LESRGCQPD-VISYNMLLRTLLNMG-KWEEGEKLMTEMIS 257 (534)
Q Consensus 220 ~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 257 (534)
...+..+. ..+|..+..++...| ++++|.+.+++...
T Consensus 227 -~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 227 -CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 22222222 567888888999999 46999988887764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-06 Score=77.17 Aligned_cols=180 Identities=11% Similarity=0.038 Sum_probs=130.5
Q ss_pred CCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-C-CHHHHHH
Q 047017 86 RKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN-QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR-G-MIESAFK 162 (534)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~ 162 (534)
+..++|+.+++.++..+|.+..+|+.-..++...| .++++++.++.+.... +-+..+|+.-..++... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44568999999999999999999999999998888 5999999999999874 33677888777777666 6 8899999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047017 163 VFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNM 242 (534)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (534)
.++.+++.. +.|..+|+.-..+..+.|.++.+ ....+.+++..++++.+.. +.|...|+.....+.+.
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~----------~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRI----------SEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCC----------CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhcccccc----------chhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 999999876 77888887766665555544400 0001123444444446654 34777888888887777
Q ss_pred CC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 047017 243 GK-------WEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGK 279 (534)
Q Consensus 243 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (534)
+. ++++++.+++++...+. |...|+.+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 76 67888888888876433 66667666555555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-08 Score=75.57 Aligned_cols=115 Identities=11% Similarity=-0.022 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
.+..++..+...|++++|...++.+....+.+..++..++.++...|++++|.+.+++..... +.+...+..+..++..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444331 1223444444444445
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 047017 154 RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG 190 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 190 (534)
.|++++|...+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555444432 333444444444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.89 E-value=8.5e-08 Score=72.61 Aligned_cols=96 Identities=9% Similarity=0.138 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
.+..++..+...|++++|...++.+....+.+..++..++.++...|++++|...++++.... +.+...+..+..++..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444445555544444444331 2233444444444555
Q ss_pred CCCHHHHHHHHHHHHhC
Q 047017 154 RGMIESAFKVFDQLLRD 170 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~ 170 (534)
.|++++|...++++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 55555555555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=7e-09 Score=86.34 Aligned_cols=123 Identities=11% Similarity=0.027 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT---------------VISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
..+..+...+...|++++|...|++..+...... ...+..+..++...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455666667777777777777777766421111 2677888889999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhh
Q 047017 470 CKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEIS 528 (534)
Q Consensus 470 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 528 (534)
+ .+...+..++.++...|++++|+..|+++++..|.++.++..++.++...++.+++.
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3 467888899999999999999999999999999999999999999999998888776
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-06 Score=73.32 Aligned_cols=201 Identities=9% Similarity=0.075 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNG--NADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD-KIRALGM 391 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 391 (534)
+++++.+++.+...+ +.+..+|..-..++...+ .+++++.+++.+.+.. |.|..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555555442 334455554444444444 2455555555555543 4455555555544445554 3555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----
Q 047017 392 ISEMLSKGIEPDEITYNSLISCLCRD--------------GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT----- 452 (534)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 452 (534)
+..+.+.. +-|...|+.....+... +.++++++.+.+.+... +-|...|+-+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 55555442 22344444443333332 33566666666666542 22555555444444333
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcch
Q 047017 453 ------RRINESIEVLAAMFEKGCKPNETTYVLLIE---GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 453 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
+.++++++.++++++..+. +...+..++. .....|..+++..+++++++.+|.-...|..+...+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~~ 321 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 321 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 3467888889999886432 3333333322 22256788999999999999999988777777655443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-07 Score=82.55 Aligned_cols=162 Identities=7% Similarity=-0.008 Sum_probs=124.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--C----hh
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDV------VMCTKLIKKFFQERKSNKAVRVMEILEKYGEP--D----VF 107 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~ 107 (534)
+...+..+...|++++|.+.+++.++.... .. ..+..++..+...|++++|...++.+....+. + ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 456677888999999999999998876422 22 23445667778889999999999998865421 1 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCC-CH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSR-GFSPD-----VVTYNIMIGSLCSRGMIESAFKVFDQLLRDN----CKP-TV 176 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~ 176 (534)
+++.++..|...|++++|...|+++.+. ...|+ ..++..+..+|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8889999999999999999999998732 00122 2578889999999999999999999987542 111 15
Q ss_pred hhHHHHHHHHHhcCCHhHH-HHHHHHh
Q 047017 177 ITYTILIQATMLEGQTDKA-MKLLDEM 202 (534)
Q Consensus 177 ~~~~~l~~~~~~~g~~~~a-~~~~~~~ 202 (534)
.++..++.+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6788999999999999999 6767664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=71.14 Aligned_cols=114 Identities=10% Similarity=-0.038 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047017 403 DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIE 482 (534)
Q Consensus 403 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 482 (534)
....+..++..+...|++++|...+++..... +.+...+..++.++...|++++|...++++++..+ .+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 34566777888888999999999998887753 33677788888889999999999999999988753 36788888999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
++...|++++|...++++++.+|.++..+..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999988887776653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=79.01 Aligned_cols=96 Identities=13% Similarity=-0.100 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLC 152 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (534)
..+..++..+...|++++|...|+.+...+|.+...|..+..++...|++++|...|+++...+ +.+...+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3344444445555555555555555555545555555555555555555555555555554442 223344444555555
Q ss_pred cCCCHHHHHHHHHHHHh
Q 047017 153 SRGMIESAFKVFDQLLR 169 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~ 169 (534)
..|++++|...|+.+.+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.2e-08 Score=73.04 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..|..+...+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..++.+...+|.+..++..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666666777777777777777776654 4566677777777777777777777777777776667777777777777
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSR 135 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~ 135 (534)
..|++++|.+.|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777766654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.6e-07 Score=80.52 Aligned_cols=167 Identities=8% Similarity=0.015 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--H
Q 047017 336 NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV------SSYNTMFSALWSSGDKIRALGMISEMLSKGI---EPD--E 404 (534)
Q Consensus 336 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 404 (534)
.+...+..+...|++++|...+.+..+.. +... ..+..+...+...|++++|+..++++.+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34445556667777777777777666542 2121 1233345556677788888888877765311 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-C
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMEST-RFRPT-----VISYNIIILGFCKTRRINESIEVLAAMFEKG----CKP-N 473 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~ 473 (534)
.+++.++..|...|++++|...++++.+. ...|+ ..++..++.+|...|++++|+.+++++++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777888888888888888888877621 00111 2477788888888888888888888887531 111 1
Q ss_pred HHHHHHHHHHHHccCCHHHH-HHHHHHHHHc
Q 047017 474 ETTYVLLIEGIGYGGWRAEA-MELANALVSM 503 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 503 (534)
..++..++.++...|++++| ..++++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56777888888899999988 7778887764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.4e-08 Score=73.94 Aligned_cols=123 Identities=12% Similarity=-0.056 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLI 481 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 481 (534)
.+...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...++++++.++. +...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 456777788888888888888888888887753 335677888888888899999999999888887533 677888888
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCC-----chHHHHHHHhhcchHHHHHH
Q 047017 482 EGIGYGGWRAEAMELANALVSMHAI-----SRDTFKRLNRTFPLLDVYKE 526 (534)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 526 (534)
.++...|++++|+..++++++..|. .......+..+........+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999888776 56666666666555444333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.2e-08 Score=79.31 Aligned_cols=129 Identities=9% Similarity=0.051 Sum_probs=91.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCh--H
Q 047017 380 WSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILG-FCKTRRI--N 456 (534)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 456 (534)
...|++++|...+++..+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776642 3456777777778888888888888888777653 2356666777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 457 ESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
+|...++++++.++ .+...+..++..+...|++++|...++++++..|.++...
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 88888888887653 3567777888888888888888888888888888766443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-08 Score=81.57 Aligned_cols=155 Identities=11% Similarity=-0.028 Sum_probs=116.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCChhhHHHHHHHHHhcC
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG------EPDVFAYNALISGFCKAN 120 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g 120 (534)
++..|++++|.+.++.+.. .......++..++..+...|++++|...++...... +....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4578999999996665544 323567788999999999999999999999988732 344567888999999999
Q ss_pred CHHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCC--HhhHHHHHHHHHhc
Q 047017 121 QIELANKVLDRLRSR----GFSP--DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN---CKPT--VITYTILIQATMLE 189 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~ 189 (534)
++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..... ..+. ..++..+..++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999987654 2111 24457788899999999999999999887431 0111 23467888899999
Q ss_pred CCHhHHHHHHHHh
Q 047017 190 GQTDKAMKLLDEM 202 (534)
Q Consensus 190 g~~~~a~~~~~~~ 202 (534)
|++++|...+++.
T Consensus 161 g~~~~A~~~~~~a 173 (203)
T 3gw4_A 161 KNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9999999988875
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.7e-08 Score=76.85 Aligned_cols=110 Identities=9% Similarity=-0.110 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047017 403 DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIE 482 (534)
Q Consensus 403 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 482 (534)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|+..++++++.++. +...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777778888888888888888887753 236777888888888888888888888888887533 6778888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
++...|++++|+..|+++++..|.++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 88888888888888888888888887754443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.9e-08 Score=86.48 Aligned_cols=123 Identities=12% Similarity=-0.014 Sum_probs=68.9
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD---------------VFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+...+..++..+...|++++|+..|+.+....|.+ ..++..+..++.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555554444 355555666666666666666666665554
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 136 GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
. +.+...|..+..+|...|++++|...|+++++.. |.+...+..+..++...|+.+++
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 2245555555566666666666666666655553 44455555555555555655555
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=4.5e-08 Score=73.69 Aligned_cols=97 Identities=11% Similarity=0.013 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..+..+...+.+.|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|+.+.+.+|.+..++..+..++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356777888899999999999999998875 6688889999999999999999999999999998889999999999999
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSR 135 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~ 135 (534)
..|++++|...++++.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998865
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7e-06 Score=72.66 Aligned_cols=212 Identities=7% Similarity=-0.021 Sum_probs=147.1
Q ss_pred hHHHHHH---HHHhcCChh-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCC
Q 047017 39 QFMKLIK---RSFRAGKFD-ESLYFIESMVANGCKPDVVMCTKLIKKFFQERK----------SNKAVRVMEILEKYGEP 104 (534)
Q Consensus 39 ~~~~l~~---~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~ 104 (534)
.|..+.. ...+.|+++ +|+.+++.++..+ |.+..+|+.-..++...+. +++++.+++.+...+|.
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 4544443 345678777 7999999999876 5677888876666655554 68899999999999999
Q ss_pred ChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHhhHHH
Q 047017 105 DVFAYNALISGFCKAN--QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM-IESAFKVFDQLLRDNCKPTVITYTI 181 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 181 (534)
+..+|+.-..++.+.| ++++++++++++.+.. +.|..+|+.-..++...|. ++++++.++.+++.+ +.|...|+.
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~ 184 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY 184 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 9999999998888888 4899999999999874 4478888888888888888 699999999999887 778888888
Q ss_pred HHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----------CCHHHHHH
Q 047017 182 LIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNM-----------GKWEEGEK 250 (534)
Q Consensus 182 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~ 250 (534)
...++...+....+- .......+.+++++..+....... +-|...|+-+-..+.+. +.++++++
T Consensus 185 R~~ll~~l~~~~~~~----~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 185 RSCLLPQLHPQPDSG----PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHSCCC----------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccc----cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 777665542211000 000001123445555555556553 33666676554444443 23556666
Q ss_pred HHHHHHHC
Q 047017 251 LMTEMISR 258 (534)
Q Consensus 251 ~~~~~~~~ 258 (534)
.++++.+.
T Consensus 260 ~~~elle~ 267 (331)
T 3dss_A 260 SCKELQEL 267 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66666655
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-07 Score=68.58 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..+..+...+...|++++|...|+++.... +.+...+..++.++...|++++|...++.+....|.+..++..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345555666666666666666666665543 3455566666666666666666666666666665555666666666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSR 135 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~ 135 (534)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.1e-08 Score=72.73 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----hhhHHHH
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGF--SPD----VVTYNIM 147 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 147 (534)
++..++..+.+.|++++|+..|+++...+|.+..+|..+..+|...|++++|++.+++.++.+. .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445555555566666666666655555555555565566666666666666665555544310 001 1244555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 148 IGSLCSRGMIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 148 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
..++...|++++|++.|++.+.. .|++.+..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 56666666666666666666553 34444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.8e-08 Score=80.64 Aligned_cols=157 Identities=7% Similarity=-0.136 Sum_probs=90.3
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCH
Q 047017 346 KNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK----GIE-PDEITYNSLISCLCRDGMV 420 (534)
Q Consensus 346 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 420 (534)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +.. .....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666543333221 1223445555666666666666666666655541 111 1234556666677777777
Q ss_pred HHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHccCC
Q 047017 421 DEAVGLLVDMEST----RFRP--TVISYNIIILGFCKTRRINESIEVLAAMFEKG---CKPN--ETTYVLLIEGIGYGGW 489 (534)
Q Consensus 421 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~ 489 (534)
++|...+++..+. +..+ ....+..+...+...|++++|...+++.++.. ..+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665432 1111 13345667777777788888887777776421 1111 2335677778888888
Q ss_pred HHHHHHHHHHHHHc
Q 047017 490 RAEAMELANALVSM 503 (534)
Q Consensus 490 ~~~A~~~~~~~~~~ 503 (534)
+++|.+.++++++.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888775
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.8e-08 Score=72.68 Aligned_cols=96 Identities=9% Similarity=-0.094 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
.+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..++++++.++. +...+..++.++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 33444445555555555555554431 123444445555555555555555555555554322 3444445555555555
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 047017 489 WRAEAMELANALVSMHAI 506 (534)
Q Consensus 489 ~~~~A~~~~~~~~~~~~~ 506 (534)
++++|+..++++++.+|.
T Consensus 100 ~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 555555555555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-07 Score=72.13 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-------hhhHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD-------VFAYN 110 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 110 (534)
..+..+...+.+.|++++|+..|+++++.. |.+..+|..++.++...|++++|+..++...+..|.+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356788899999999999999999999875 6678899999999999999999999999988776332 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 047017 111 ALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNI 146 (534)
Q Consensus 111 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 146 (534)
.+..++...|++++|++.|++.+.. .||......
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 7888888999999999999998875 566655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-07 Score=72.48 Aligned_cols=115 Identities=10% Similarity=-0.055 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT----VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTY 477 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 477 (534)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|+..++++++..+ .+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence 35667777788888888888888888888775 444 56777888888899999999999999888643 367788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
..++.++...|++++|...++++++..|.++..+..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 888889999999999999999999999998888877766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.7e-07 Score=70.45 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=93.2
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD---VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
.+...+..+...+...|++++|+..|+++++.. +.+ ...+..++.++...|++++|+..++.+....|.+..++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 356778889999999999999999999998864 222 6788889999999999999999999999888888899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHH
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIG 149 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 149 (534)
+..++...|++++|.+.|++..+. .| +...+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 999999999999999999998876 34 3444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-07 Score=73.48 Aligned_cols=99 Identities=6% Similarity=0.027 Sum_probs=88.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...|..+...+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..|+.+...+|.+..+|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888889999999999999999998875 56788899999999999999999999999999988889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 047017 116 FCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~ 135 (534)
+...|++++|.+.|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 99999999999999998876
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=75.56 Aligned_cols=122 Identities=14% Similarity=0.011 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMEST--------R---------FRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
.+...+..+.+.|++++|...|.+.+.. . .+.+...|..+..+|...|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555566666666666555432 0 0113467888899999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch-HHHHHHHhhcchHHHHHHhh
Q 047017 469 GCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR-DTFKRLNRTFPLLDVYKEIS 528 (534)
Q Consensus 469 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 528 (534)
++ .+...|..++.++...|++++|...|+++++.+|.++ .+...+..+....+++++..
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 3788899999999999999999999999999999988 66777777777776665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-07 Score=76.82 Aligned_cols=120 Identities=12% Similarity=-0.036 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDV----------------VMCTKLIKKFFQERKSNKAVRVMEILEKYGE 103 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 103 (534)
+..+...+...|++++|+..|++++... +.+. .++..++.++...|++++|+..++.+....|
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 5555666666777777777777766643 1122 4555666666666666666666666666666
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 047017 104 PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAF 161 (534)
Q Consensus 104 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 161 (534)
.+..++..+..++...|++++|.+.|++..+.. +.+...+..+..++...++..++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666665542 223445555555555444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-07 Score=88.11 Aligned_cols=123 Identities=10% Similarity=-0.045 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--------------VISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
.+..+...+.+.|++++|...|+++++...... ...|..+..+|.+.|++++|+..++++++..+.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444555555555666666666655554311111 356777777778888888888888888776533
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhh
Q 047017 472 PNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 529 (534)
+...+..+..+|...|++++|+..|+++++..|.+..++..++.++...++++++.+
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777888888888888888888888888888888888888888777776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-07 Score=70.83 Aligned_cols=118 Identities=12% Similarity=0.081 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----HHHH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK--PN----ETTY 477 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 477 (534)
...+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++++.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777778888888888888877653 335667777888888888888888888888775321 12 6677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
..++.++...|++++|...++++++..| ++.....+..+....++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 7888888899999999999999998887 57777777776655544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-07 Score=67.70 Aligned_cols=99 Identities=6% Similarity=-0.109 Sum_probs=58.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP--DVVTYNIMI 148 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 148 (534)
+...+..++..+...|++++|...|+.+....+.+..++..+..++...|++++|.+.+++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344555555566666666666666666665555555566666666666666666666666665542 22 345555566
Q ss_pred HHHHcC-CCHHHHHHHHHHHHhC
Q 047017 149 GSLCSR-GMIESAFKVFDQLLRD 170 (534)
Q Consensus 149 ~~~~~~-g~~~~a~~~~~~~~~~ 170 (534)
.++... |++++|.+.++.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-07 Score=69.25 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=90.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--ChhhHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP--DVFAYNALI 113 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 113 (534)
+...+..+...+...|++++|+..|+++.+.. +.+...+..++.++...|++++|...++.+.+..+. +..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34567788899999999999999999998875 567889999999999999999999999999999888 899999999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC
Q 047017 114 SGFCKA-NQIELANKVLDRLRSR 135 (534)
Q Consensus 114 ~~~~~~-g~~~~a~~~~~~~~~~ 135 (534)
.++... |++++|.+.++.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999 9999999999999877
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=72.10 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-------hhhHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD-------VFAYNA 111 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~ 111 (534)
.|..+...+...|++++|...|+++.... +.+...+..++.++...|++++|...++.+....+.+ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555555443 3344555555555555555555555555554443222 444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 112 LISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
++.++...|++++|.+.|+++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 455555555555555555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-07 Score=69.73 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+...|++++|+..|+.++... +.+..++..++.++...|++++|...++.+...+|.+..++..+..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555555555555555555555555443 334455555555555555555555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 047017 117 CKANQIELANKVLDRLRS 134 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~ 134 (534)
...|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.4e-07 Score=68.26 Aligned_cols=95 Identities=13% Similarity=0.051 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---hhhHHHHH
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDV---VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD---VFAYNALI 113 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 113 (534)
+..+...+...|++++|+..|+.+.+.. +.+. .++..++.++...|++++|...|+.+....|.+ ..++..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4456666777777777777777777653 2233 466677777777777777777777777766655 56677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 047017 114 SGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
.++...|++++|...|+.+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.6e-07 Score=67.27 Aligned_cols=108 Identities=12% Similarity=0.004 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFRPTV---ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN--ETTYVLLIE 482 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 482 (534)
..+...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...++++++..+... ...+..++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34566777888899999988888775322 23 4677788888899999999999999888653311 567778888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
++...|++++|...++++++..|.++.+.....+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8999999999999999999998888766554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.8e-07 Score=83.58 Aligned_cols=93 Identities=10% Similarity=-0.066 Sum_probs=83.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
+...|..+..+|.+.|++++|+..++++++..+ .+...+..+..+|...|++++|+..|+++++..|.++.++..++.+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456788899999999999999999999998753 3688889999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhhhh
Q 047017 518 FPLLDVYKEISHLA 531 (534)
Q Consensus 518 ~~~~~~~~~~~~~~ 531 (534)
+...++++++.+..
T Consensus 351 ~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 351 KQKIKAQKDKEKAA 364 (370)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-07 Score=86.54 Aligned_cols=174 Identities=10% Similarity=0.020 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047017 349 NADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD----------KIRALGMISEMLSKGIEPDEITYNSLISCLCRDG 418 (534)
Q Consensus 349 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 418 (534)
..++|++.++++...+ |.+..+|+.-..++...++ +++++..++.+.+.. +-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456677777777764 5566667666666666655 778888888887753 336677777777777777
Q ss_pred --CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------
Q 047017 419 --MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR-RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG-------- 487 (534)
Q Consensus 419 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 487 (534)
+++++++.++++.+.... +...|+.-..++...| .++++++.++++++.++. +...|......+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 668888888888876433 6777777777777777 788888888888877644 677777666665542
Q ss_pred ------CCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHH
Q 047017 488 ------GWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKE 526 (534)
Q Consensus 488 ------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 526 (534)
+.++++.+++++++..+|.+.++|..+..++...+++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999988777555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-07 Score=87.56 Aligned_cols=121 Identities=9% Similarity=-0.002 Sum_probs=96.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047017 410 LISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGW 489 (534)
Q Consensus 410 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 489 (534)
+...+...|++++|.+.+++..+.. +.+...|..+..+|...|++++|+..++++++..+ .+...+..++.+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3445567888899999988887752 33577888888999999999999999999988753 367888888999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHhh--cchHHHHHHhhhhhc
Q 047017 490 RAEAMELANALVSMHAISRDTFKRLNRT--FPLLDVYKEISHLAT 532 (534)
Q Consensus 490 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~ 532 (534)
+++|++.++++++..|.++.++..++.+ +...+++++|...+.
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999888888888888 778899999888765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-06 Score=79.20 Aligned_cols=202 Identities=8% Similarity=-0.054 Sum_probs=141.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDV----------------VMCTKLIKKFFQERKSNKAVRVMEILEKYG-EP 104 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 104 (534)
.-.+.+.+.|++++|++.|..+++....... .++..++..|...|++++|...+..+.... ..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3467789999999999999999886422211 247789999999999999999999887654 11
Q ss_pred -Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhC--C-
Q 047017 105 -DV----FAYNALISGFCKANQIELANKVLDRLRSR----GFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRD--N- 171 (534)
Q Consensus 105 -~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~- 171 (534)
+. .+...+...+...|+++.|.++++..... +..+. ..++..+...|...|++++|..+++.+... +
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 11 23334444555678999999999887543 22222 456778999999999999999999988653 1
Q ss_pred --CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHH
Q 047017 172 --CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD--VISYNMLLRTLLNMGKWEE 247 (534)
Q Consensus 172 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 247 (534)
.+....++..++..|...|++++|...+++. ..+ ....+.++. ...+..++..+...+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-----------l~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA-----------RTA---ANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHH---HHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH-----------HHH---hhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 1223457888999999999999999998875 111 112211111 2345556666777888888
Q ss_pred HHHHHHHHHH
Q 047017 248 GEKLMTEMIS 257 (534)
Q Consensus 248 a~~~~~~~~~ 257 (534)
|...|.+...
T Consensus 235 A~~~~~~a~~ 244 (434)
T 4b4t_Q 235 AFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777766643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.55 E-value=8.4e-08 Score=90.96 Aligned_cols=149 Identities=13% Similarity=0.053 Sum_probs=109.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---------------hhhHHHHHHH
Q 047017 51 GKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD---------------VFAYNALISG 115 (534)
Q Consensus 51 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~ 115 (534)
+++++|+..|+...... +.....+..++..+.+.|++++|...|+++....+.+ ..+|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555655554443321 2345677778888888888888888888888776655 5788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..++...++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888773 3367788888889999999999999999988775 55667888888888888888776
Q ss_pred HH-HHHHh
Q 047017 196 MK-LLDEM 202 (534)
Q Consensus 196 ~~-~~~~~ 202 (534)
.+ .+..+
T Consensus 405 ~~~~~~~~ 412 (457)
T 1kt0_A 405 DRRIYANM 412 (457)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 64 34433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=68.38 Aligned_cols=95 Identities=8% Similarity=-0.047 Sum_probs=81.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------hHHH
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS------RDTF 511 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 511 (534)
+...+..+...+...|++++|+..++++++..+ .+...+..++.++...|++++|+..++++++..|.+ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 455677888889999999999999999998753 378888899999999999999999999999999988 7888
Q ss_pred HHHHhhcchHHHHHHhhhhhcc
Q 047017 512 KRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 512 ~~l~~~~~~~~~~~~~~~~~~k 533 (534)
..++.++...|+++++...+.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 8999999998888777766543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-06 Score=70.35 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC--------C---------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVAN--------G---------CKPDVVMCTKLIKKFFQERKSNKAVRVMEILE 99 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 99 (534)
...+......+.+.|++++|+..|++++.. . .+.+...|..++.++...|++++|+..++.+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345777888899999999999999998764 1 02233566667777777777777777777777
Q ss_pred HcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 100 KYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 100 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
..+|.+..+|..++.++...|++++|...|++....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.9e-08 Score=72.29 Aligned_cols=94 Identities=13% Similarity=0.003 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 417 DGMVDEAVGLLVDMESTR--FRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 417 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|+..++++++..+. +..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 577788888888887653 1224566777888888888888888888888887543 5777788888888888888888
Q ss_pred HHHHHHHHcCCCchHHH
Q 047017 495 ELANALVSMHAISRDTF 511 (534)
Q Consensus 495 ~~~~~~~~~~~~~~~~~ 511 (534)
..++++++..|.++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888777543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-05 Score=75.26 Aligned_cols=197 Identities=12% Similarity=0.037 Sum_probs=91.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCH----------------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC
Q 047017 270 LISSLCRDGKTEDAVDVLRAAKEKGLTPDA----------------YSYDPLISAYCKDGRLDLAIEFLDYMISDGC-LP 332 (534)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 332 (534)
-...+...|++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+...-. .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345566677777777777777765322111 1244556666666666666666655543210 11
Q ss_pred CHH----HHHHHHHHHHhCCCHHHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC
Q 047017 333 DIV----NYNTILAAFCKNGNADQALEIFEKLSDV----GC-PPNVSSYNTMFSALWSSGDKIRALGMISEMLSK--GIE 401 (534)
Q Consensus 333 ~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 401 (534)
+.. +.+.+...+...|+.+.|..+++..... +. ..-..++..++..+...|++++|..+++++... +..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 1122222333345555665555554321 11 111234445555555555555555555554432 111
Q ss_pred --C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C-C--hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 402 --P-DEITYNSLISCLCRDGMVDEAVGLLVDMEST--RFR-P-T--VISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 402 --~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
+ ....+..++..|...|++++|..++++.... .+. | . ...+..++..+...|++++|...+.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1234445555555555555555555544321 011 1 0 1223334444444555555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-07 Score=68.56 Aligned_cols=87 Identities=15% Similarity=-0.005 Sum_probs=71.2
Q ss_pred hcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047017 49 RAGKFDESLYFIESMVANG--CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELAN 126 (534)
Q Consensus 49 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 126 (534)
..|++++|+..|+++++.+ -+.+..++..++.++...|++++|+..|+.+.+..|.+..++..+..++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688899999999988763 24456788889999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHhC
Q 047017 127 KVLDRLRSR 135 (534)
Q Consensus 127 ~~~~~~~~~ 135 (534)
+.+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988766
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.3e-07 Score=86.44 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=84.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
...+.+.|++++|++.|+++++.. +.+..++..++.++.+.|++++|+..++++.+.+|.+..++..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344567788888888888887764 5567778888888888888888888888888877777888888888888888888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHH--HHcCCCHHHHHHHHH
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGS--LCSRGMIESAFKVFD 165 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 165 (534)
+|.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877652 2234445555444 667777777777777
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.46 E-value=7.1e-07 Score=68.93 Aligned_cols=91 Identities=11% Similarity=-0.119 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-------C
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFEKGCKP------N-----ETTYVLLIEGIGYGGWRAEAMELANALVSM-------H 504 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 504 (534)
......+...|++++|+..|+++++..+.. + ...|..+..++.+.|++++|+..++++++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344445555666666666666666543221 2 237788888888888888888888888888 8
Q ss_pred CCchHHH----HHHHhhcchHHHHHHhhhhhcc
Q 047017 505 AISRDTF----KRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 505 ~~~~~~~----~~l~~~~~~~~~~~~~~~~~~k 533 (534)
|....+| ...+.++..+|++++|...+.|
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 8888888 8888888888888888877654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=79.21 Aligned_cols=136 Identities=4% Similarity=-0.119 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+..+...+.+.|++++|+..|+++++.. +... .... .+......+.+..+|..+..++.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666777777888888888887776510 0000 0000 0000111233344455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 196 (534)
|++++|.+.++++++.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++.
T Consensus 287 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555442 1234445555555555555555555555555443 334444444555554444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-06 Score=65.52 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------CH-----hhHHHHHHHHHhcCCHhHHHHHHHHHHHc-----
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKP------DV-----VMCTKLIKKFFQERKSNKAVRVMEILEKY----- 101 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 101 (534)
..+......+...|++++|+..|+++++..+.. +. ..|..+..++...|++++|+..++..+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345667778888999999999999988764221 22 27777777888888888888888777777
Q ss_pred --CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 102 --GEPDVFAY----NALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 102 --~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+|.+..+| .....++...|++++|+..|++..+.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666677 77777777777777777777776544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.7e-07 Score=80.64 Aligned_cols=130 Identities=10% Similarity=-0.041 Sum_probs=66.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 369 VSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILG 448 (534)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 448 (534)
...+..+...+...|++++|...|++++.. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666677777788888888888887764 344321 111222222221110 1245556666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 449 FCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 449 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
|...|++++|+..++++++..+ .+...+..+..+|...|++++|+..|+++++..|.++.++..++.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 6666666666666666666542 25566666666666666666666666666666666666666666553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.6e-07 Score=70.94 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-Ch
Q 047017 370 SSYNTMFSALWSSGDKIRALGMISEMLSKGIE-PD----EITYNSLISCLCRDGMVDEAVGLLVDMEST----RFRP-TV 439 (534)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~ 439 (534)
.++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46677788888899999999999887753110 11 136677788888889999999988887643 1111 13
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEK----GCK-PNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
..+..+..++...|++++|...+++.++. +.. ....++..+...+...|++++|.+.++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45667788888889999998888888763 111 1134566777888888889999888888876543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=69.10 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCC----h
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCK-PD----VVMCTKLIKKFFQERKSNKAVRVMEILEKYG--EPD----V 106 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~ 106 (534)
..+..+...+...|++++|+..++++.+.... .+ ..++..++..+...|++++|...++...... ..+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777777788888888888776653111 01 1355666667777777777777776665443 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLRSR----GFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
.++..+..++...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34555566666666666666666655432 1000 12334445555555555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-06 Score=78.11 Aligned_cols=130 Identities=11% Similarity=0.089 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-----------------hhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDV-----------------VMCTKLIKKFFQERKSNKAVRVMEILEK 100 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 100 (534)
..+..+...+.+.|++++|+..|++++... +.+. .+|..++.++.+.|++++|+..++.+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346667777888999999999999988753 2222 2677777777888888888888888877
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHH-HHcCCCHHHHHHHHHHHHhC
Q 047017 101 YGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGS-LCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 101 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 170 (534)
.+|.+..++..+..+|...|++++|...|+++.+. .| +...+..+... ....+..+++...|..+...
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 77777778888888888888888888888877655 33 34444444444 23345566667777776654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.2e-06 Score=58.91 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 439 VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 439 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
...+..+...+...|++++|...++++++..+ .+...+..+..++...|++++|...++++++.+|.++.++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45677788888889999999999999888753 36778888999999999999999999999999999999998888877
Q ss_pred chH
Q 047017 519 PLL 521 (534)
Q Consensus 519 ~~~ 521 (534)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-06 Score=66.62 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=81.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH----------hHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKS----------NKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
.-+.+.+++|++.++..++.. |.+...|..++.++...+++ ++|+..|+++++.+|.+..+|..+..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 445678899999999999876 77899999999999888775 4999999999999999999999999999
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 117 CKAN-----------QIELANKVLDRLRSRGFSPDVVTYNIMIG 149 (534)
Q Consensus 117 ~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 149 (534)
...| ++++|.+.|++.++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8875 788888888888876 666555544433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00014 Score=70.53 Aligned_cols=193 Identities=6% Similarity=-0.020 Sum_probs=144.4
Q ss_pred HHHhcCCh-hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 46 RSFRAGKF-DESLYFIESMVANGCKPDVVMCTKLIKKFFQERK----------SNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 46 ~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
...+.|++ ++|++.++.++..+ |.+..+|+.-..++...|+ +++++..++.+...+|.+..+|..-..
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w 115 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 115 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455555 57799999999876 6678889988888888887 999999999999999999999999999
Q ss_pred HHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 115 GFCKAN--QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG-MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 115 ~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++.+.| +++++++.++++.+.. +.+..+|+.-..++...| .++++++.++++++.+ +.+...|+....++...+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSC
T ss_pred HHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcc
Confidence 999999 7799999999999884 347888998888888889 8999999999999886 7788888888777665422
Q ss_pred HhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 047017 192 TDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWE 246 (534)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (534)
..++.. ......+.++++++.++...... +.+...|+.+...+.+.+..+
T Consensus 194 ~~~~~~----~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 194 QPDSGP----QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCCSSS----CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccc----cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 100000 00001133455556665556553 336677777777776666543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=55.61 Aligned_cols=80 Identities=11% Similarity=0.183 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..+..+...+...|++++|+..|+++++.. +.+...+..++.++...|++++|...|+++....|.+..++..+..++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445556666666666666666666666553 4455566666666666666666666666666666666666665555554
Q ss_pred h
Q 047017 118 K 118 (534)
Q Consensus 118 ~ 118 (534)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=64.50 Aligned_cols=87 Identities=8% Similarity=0.091 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC------hhhHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD------VFAYNA 111 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 111 (534)
..|..+...+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++.+....|.+ ..++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344555555555566666666665555543 3345555555555555555555555555555554444 334444
Q ss_pred HHHHHHhcCCHHHH
Q 047017 112 LISGFCKANQIELA 125 (534)
Q Consensus 112 l~~~~~~~g~~~~a 125 (534)
+..++...|+.+.|
T Consensus 84 ~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 84 LELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhHhhh
Confidence 44444444443333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.16 E-value=2e-05 Score=58.40 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 422 EAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
+|...+++..+.. +.+...+..+..++...|++++|+..++++++.++ .+...+..++.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666643 23566777777788888888888888888877653 356677778888888888888888888888
Q ss_pred HcCCC--chHHHHHHHhhcchHHHHH
Q 047017 502 SMHAI--SRDTFKRLNRTFPLLDVYK 525 (534)
Q Consensus 502 ~~~~~--~~~~~~~l~~~~~~~~~~~ 525 (534)
+..|. .......+...+...++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhcccc
Confidence 77653 3344455555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-05 Score=58.64 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRS 134 (534)
Q Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 134 (534)
+|+..|+++++.. +.+...+..++.++...|++++|+..|+.+....|.+..++..+..++...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666677766654 456667777777777777777777777777777676777777777777777777777777777654
Q ss_pred C
Q 047017 135 R 135 (534)
Q Consensus 135 ~ 135 (534)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00012 Score=56.07 Aligned_cols=111 Identities=6% Similarity=-0.088 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHH
Q 047017 384 DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----TRRINESI 459 (534)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 459 (534)
++++|+..|++..+.| .++.. +...|...+.+++|.+.|++..+.| +......|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666554 22222 4455555555666666666666542 44555556666655 56677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCC
Q 047017 460 EVLAAMFEKGCKPNETTYVLLIEGIGY----GGWRAEAMELANALVSMHA 505 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 505 (534)
.+|++..+.| +...+..|...|.. .+++++|.++|+++.+.+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777766654 45556666666666 6677777777777776643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=61.09 Aligned_cols=98 Identities=8% Similarity=-0.104 Sum_probs=65.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047017 417 DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR----------INESIEVLAAMFEKGCKPNETTYVLLIEGIGY 486 (534)
Q Consensus 417 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 486 (534)
.+.+++|.+.+++..+.. +.+...|..+..++...++ +++|+..|+++++.++. +..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 345566666666665542 2245555555555555544 45888888888887543 66777778888876
Q ss_pred cC-----------CHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 487 GG-----------WRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 487 ~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
.| ++++|++.|+++++++|.+......+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 64 8999999999999999987755555433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-05 Score=75.37 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=96.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHH
Q 047017 150 SLCSRGMIESAFKVFDQLLRD-----N--CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES 222 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~ 222 (534)
.+...|++++|+.++++.++. | .+....+++.|+.+|...|++++|..++++. +.++.....
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----------L~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM-----------VDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHHcC
Confidence 356789999999999988753 2 1223457899999999999999999998865 555555444
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-hhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047017 223 RGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR-----GLE-PN-VVTYSILISSLCRDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (534)
.+.+....+++.|...|...|++++|+.++++.++. |.. |+ ..+...+..++...+.+++|..++..+.+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444567899999999999999999999887643 321 21 23445566667777788888888877765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=75.48 Aligned_cols=134 Identities=8% Similarity=-0.003 Sum_probs=100.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---CCC---C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CCCCHhhH
Q 047017 114 SGFCKANQIELANKVLDRLRSR---GFS---P-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-----N--CKPTVITY 179 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~---~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~ 179 (534)
..+..+|++++|..++++.++. -+. | ...+++.|+.+|...|++++|..++++.+.. | .+....++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999999887653 111 2 2457888999999999999999999887753 2 22334578
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 180 TILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 180 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
+.|+..|...|++++|..+++++ +.++......+.+....+.+.+..++...+.+++|+.++..+.+.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~A-----------l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKA-----------YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-----------HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 666665544443334455677778888899999999999988653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00018 Score=55.13 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=4.5
Q ss_pred CHHHHHHHHHHH
Q 047017 349 NADQALEIFEKL 360 (534)
Q Consensus 349 ~~~~A~~~~~~~ 360 (534)
++++|+.+|++.
T Consensus 76 d~~~A~~~~~~A 87 (138)
T 1klx_A 76 DLRKAAQYYSKA 87 (138)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 333333333333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.89 E-value=6.1e-05 Score=54.00 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=31.9
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLR 133 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 133 (534)
+..++..++.++...|++++|+..|+.+.+.+|.+..+|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555555555444444555555555555555555555555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00012 Score=52.30 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=46.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPNET-TYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
.+..+...|++++|+..++++++..+. +.. .+..++.++...|++++|+..|+++++.+|.++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566777777777777777776422 455 677777777777777777777777777777777665
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=8.5e-05 Score=53.23 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=30.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047017 103 EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 103 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
|.++.++..+..++...|++++|...|+++.+.. +.+...|..+..+|...|++++|.+.|++.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555555555555544432 1133444444555555555555555555444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00032 Score=53.34 Aligned_cols=94 Identities=10% Similarity=0.024 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 047017 420 VDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR---RINESIEVLAAMFEKGCKP--NETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
...+.+.|.+....+. ++..+...+.+++++.+ +.++++.+++...+.+ .| +...+..+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666554 67888888899999988 6669999999998875 23 4566677888899999999999
Q ss_pred HHHHHHHHcCCCchHHHHHHH
Q 047017 495 ELANALVSMHAISRDTFKRLN 515 (534)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~ 515 (534)
++++++++..|.+..+.....
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999887766543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=52.22 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVV-MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY 109 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (534)
....+...|++++|+..|+++++.. +.+.. .+..++.++...|++++|...|+.+...+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4555667777777777777776654 44555 667777777777777777777777777666555554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.69 E-value=1.7e-06 Score=77.98 Aligned_cols=217 Identities=14% Similarity=0.094 Sum_probs=142.8
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG 149 (534)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 149 (534)
..+..|..++++....++..+|++.|-+ ..|+..|..++.+..+.|.+++-..++....+. ..++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3566788888888888888777765533 346667788888888888888888888777655 234455567888
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh--------cccccCChHHHHHHHHHHH
Q 047017 150 SLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM--------GMCKKGMVGQAFQFVRSLE 221 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~a~~~~~~~~ 221 (534)
+|++.++..+-.+.+. .||..-...++.-|...|.++.|.-+|..+ .+...|++..|.+.-+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr--- 194 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR--- 194 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT---
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH---
Confidence 8888888665444322 466666677888888888888888887776 4555666666553322
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhc
Q 047017 222 SRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYS 301 (534)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (534)
...++.||-.+-.+|...+++.-|.-.--.++-. +.....++..|...|-+++.+.+++...... .....+
T Consensus 195 ---KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGm 265 (624)
T 3lvg_A 195 ---KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 265 (624)
T ss_dssp ---TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHH
T ss_pred ---hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHH
Confidence 2347788998888988888887765543333321 1223344555666777777777776655331 234555
Q ss_pred HHHHHHHHHhc
Q 047017 302 YDPLISAYCKD 312 (534)
Q Consensus 302 ~~~l~~~~~~~ 312 (534)
|+.|.-.|.+-
T Consensus 266 FTELaILYsKY 276 (624)
T 3lvg_A 266 FTELAILYSKF 276 (624)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 66666555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0016 Score=57.88 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=62.0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 436 RPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++++.++|..+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 4567788887777777899999999999999985 67778888889999999999999999999999997763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00075 Score=47.15 Aligned_cols=67 Identities=7% Similarity=-0.015 Sum_probs=49.7
Q ss_pred CCCHhhHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 69 KPDVVMCTKLIKKFFQERK---SNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+.++..+..++.++...++ .++|..++++..+.+|.++.+...+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777777777654444 577778888887777777777777777777888888888888877766
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0021 Score=57.22 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=78.1
Q ss_pred CCCHhhHHHHHHHH--HhcCC---HhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc---C-----CHHHHHHHHHHHHhC
Q 047017 69 KPDVVMCTKLIKKF--FQERK---SNKAVRVMEILEKYGEPDVFAYNALISGFCKA---N-----QIELANKVLDRLRSR 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~--~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-----~~~~a~~~~~~~~~~ 135 (534)
+.+..+|...+++. ...++ ..+|+.+|+++.+.+|....++..+..++... + ........++.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 55666666655543 22222 36677777777777777777666555554321 1 111111222222111
Q ss_pred -CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 136 -GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 136 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 114456666666666666677777777777777764 56666667777777777777777777766
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00099 Score=47.88 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=59.8
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANG------CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF 107 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (534)
.++...+..+...+.+.|++..|...|+.+++.. .......+..++.++.+.|+++.|...++.+.+..|.+..
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3566778888888899999999999998877631 1345667788888888888888888888888887777766
Q ss_pred hHHHH
Q 047017 108 AYNAL 112 (534)
Q Consensus 108 ~~~~l 112 (534)
+...+
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 54443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0014 Score=47.00 Aligned_cols=78 Identities=9% Similarity=-0.066 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKG------CKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
+......++..+...|+++.|...++.+++.. -.+...++..++.++.+.|++++|..+++++++..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444566777777788888887777776631 123467778888888889999999999999988888888776
Q ss_pred HHHH
Q 047017 512 KRLN 515 (534)
Q Consensus 512 ~~l~ 515 (534)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0013 Score=61.12 Aligned_cols=100 Identities=9% Similarity=-0.069 Sum_probs=66.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCC-C-CHHHHH
Q 047017 413 CLCRDGMVDEAVGLLVDMEST---RFRPT----VISYNIIILGFCKTRRINESIEVLAAMFE-----KGCK-P-NETTYV 478 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~ 478 (534)
.+...|++++|..++++..+. -..|+ ..+++.++.+|...|++++|..++++++. .|.. | ...++.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344667777887777777643 11222 34667777788888888888888877764 2321 1 134566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH-----cCCCchHHHH
Q 047017 479 LLIEGIGYGGWRAEAMELANALVS-----MHAISRDTFK 512 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 512 (534)
.|+..|...|++++|+.+++++++ .|+..|.+..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 788888888888888888888776 4677764443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0017 Score=45.30 Aligned_cols=70 Identities=13% Similarity=-0.008 Sum_probs=51.8
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 436 RPTVISYNIIILGFCKTRR---INESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
+.+...+..+..++...++ .++|..+++++++.++. +......++..+...|++++|+.+|+++++..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456667777777755444 67888888888887643 6777777788888888888888888888887776
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0016 Score=60.49 Aligned_cols=95 Identities=4% Similarity=-0.171 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCC-C-CHHHHHHHHH
Q 047017 417 DGMVDEAVGLLVDMEST---RFRPT----VISYNIIILGFCKTRRINESIEVLAAMFE-----KGCK-P-NETTYVLLIE 482 (534)
Q Consensus 417 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~~l~~ 482 (534)
.|++++|..++++..+. -+.|+ ..+++.++.+|...|++++|..+++++++ .|.. | ...+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777665431 11222 35677777778888888888887777764 2322 1 2345677888
Q ss_pred HHHccCCHHHHHHHHHHHHH-----cCCCchHHH
Q 047017 483 GIGYGGWRAEAMELANALVS-----MHAISRDTF 511 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 511 (534)
.|...|++++|+.+++++++ .|+..|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 88888888888888888776 466666443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0097 Score=50.67 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCH
Q 047017 420 VDEAVGLLVDMESTRFRPT---VISYNIIILGFCKT-----RRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG-GWR 490 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 490 (534)
...|...+++.++. .|+ -..|..+...|... |+.++|.+.|+++++.++.-+..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666677777664 454 44677777777773 88888888888888875433466777777777774 888
Q ss_pred HHHHHHHHHHHHcCCC
Q 047017 491 AEAMELANALVSMHAI 506 (534)
Q Consensus 491 ~~A~~~~~~~~~~~~~ 506 (534)
++|.++++++++..|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887776
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00065 Score=63.05 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=71.8
Q ss_pred cCCCHHHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCC
Q 047017 153 SRGMIESAFKVFDQLLRD-----N--CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 225 (534)
..|++++|+.++++.++. | .+....+++.|+.+|...|++++|..+++++ +.++++......
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----------L~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI-----------IKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHHcCCCC
Confidence 468899999999988753 2 1223457899999999999999999999875 555555444433
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
+....+++.|...|...|++++|+.++++.++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 33456788999999999999999999988765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.016 Score=59.51 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=92.6
Q ss_pred HHHHHhcCChhHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 44 IKRSFRAGKFDESLY-FIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
.......+++++|.+ ++..+ + +......++..+.+.|..++|.++.+... .-.......|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCH
Confidence 455567889999877 54111 1 12233666677777788777776553211 112344567777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...|...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 7777765432 2567777777777778888888777777642 223333344444444433333222
Q ss_pred cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 203 GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (534)
...|++..|...+... .-+...+..|.+.+++++|..+-+.
T Consensus 734 --~~~~~~~~A~~~~~~~---------g~~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 734 --ETTGKFNLAFNAYWIA---------GDIQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp --HHTTCHHHHHHHHHHH---------TCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHcCchHHHHHHHHHc---------CCHHHHHHHHHHcCChHHHHHHHHH
Confidence 2234444444443221 1133445556666667776665554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.24 E-value=3.4e-05 Score=69.82 Aligned_cols=233 Identities=10% Similarity=0.097 Sum_probs=163.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
.+.+|..+.++.+..|+..+|++.|- + ..|+..|..++.+..+.|++++-.+++....+. ..++.+=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 56789999999999999999988762 2 237778899999999999999999998877765 4555666788999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC--------------------CCCC
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN--------------------CKPT 175 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~ 175 (534)
|++.++..+-.+++. .||......+..-|...|.++.|.-+|..+.... -..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999998766433321 3566666677777777777777777766543211 1346
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHh------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047017 176 VITYTILIQATMLEGQTDKAMKLLDEM------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG 243 (534)
Q Consensus 176 ~~~~~~l~~~~~~~g~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (534)
+.||-.+..+|...+++.-|.-.--.+ .|...|.+++-+.+++.-.... ......|+.|.-.|++-
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF- 276 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-
Confidence 778999999999999888776554433 6777899999888888766432 34677888888777764
Q ss_pred CHHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHhCCChhHHH
Q 047017 244 KWEEGEKLMTEMISR-GLE------PNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 244 ~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
++++..+.++..-.+ +++ -....|..++-.|..-.+++.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 455555555443222 111 13445666666676666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0036 Score=45.71 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHH
Q 047017 418 GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE---SIEVLAAMFEKGCKP--NETTYVLLIEGIGYGGWRAE 492 (534)
Q Consensus 418 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 492 (534)
.....+.+.+.+....|. ++..+-..++++++++.+... ++.+++...+.+ .| .......+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555566655555443 677777788888988887666 888888888764 22 34555577888999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHH
Q 047017 493 AMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 493 A~~~~~~~~~~~~~~~~~~~~l 514 (534)
|+++++.+++..|.+..+....
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999998766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=61.02 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=74.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC---C----CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHH
Q 047017 148 IGSLCSRGMIESAFKVFDQLLRDN---C----KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220 (534)
Q Consensus 148 ~~~~~~~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 220 (534)
+..+...|++++|+.++++.++.. . +....+++.|+.+|...|++++|+.+++++ +.+++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~-----------L~i~~~~ 362 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT-----------MEPYRIF 362 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH-----------HHhHHHH
Confidence 445667899999999999998641 1 122457889999999999999999998875 5555554
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 221 ESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
.....+....+++.|...|...|++++|+.++++..+
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443333456788899999999999999998888764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.12 Score=52.99 Aligned_cols=127 Identities=20% Similarity=0.200 Sum_probs=77.6
Q ss_pred HHHhcCCHHHHHH-HHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 238 TLLNMGKWEEGEK-LMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 238 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
.....+++++|.+ ++..+ + +......++..+.+.|.++.|.++.+ ++ ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHH
Confidence 3445788888766 44211 1 12233666777778888888876652 11 11233456778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 317 LAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396 (534)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 396 (534)
.|.++.+. ..+...|..+...+.+.++++.|.+.|.++.. +..+...+...++.+....+.+.+.
T Consensus 670 ~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 88877543 23667888888888888888888888887643 3344444555666555444444333
Q ss_pred H
Q 047017 397 S 397 (534)
Q Consensus 397 ~ 397 (534)
.
T Consensus 735 ~ 735 (814)
T 3mkq_A 735 T 735 (814)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0051 Score=46.82 Aligned_cols=81 Identities=16% Similarity=0.012 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHHHcC-C-CChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 54 DESLYFIESMVANGCKPDVVMCTKLIKKFFQER---KSNKAVRVMEILEKYG-E-PDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 54 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
..+.+.|++..+.+ +++..+...+.-++++++ +.++++.+|+.+.+.+ | .....+..+.-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555555554 466777777777777766 4457777777777665 3 2455666666777777777777777
Q ss_pred HHHHHhC
Q 047017 129 LDRLRSR 135 (534)
Q Consensus 129 ~~~~~~~ 135 (534)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.016 Score=43.32 Aligned_cols=62 Identities=8% Similarity=-0.041 Sum_probs=38.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
.++.++|.++|+.+++.+-.- ..+|...++.-.+.|+...|++++.+++..+|.+.+.+...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 356666777777666542222 55566666666667777777777777777776666555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.093 Score=41.04 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=45.3
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFK 162 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 162 (534)
...|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+...+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445555555554443 2444555555555555555555555555431 2223333344455444444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 163 VFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+-+.....| -++.....+...|+++++.++|.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433333332 123333344445555555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.016 Score=49.42 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCC-ChhhHHHHHHHHHhc-CCHHHH
Q 047017 54 DESLYFIESMVANGCKP-DVVMCTKLIKKFFQ-----ERKSNKAVRVMEILEKYGEP-DVFAYNALISGFCKA-NQIELA 125 (534)
Q Consensus 54 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~a 125 (534)
..|..+++++++.+... +..+|..++..|.. -|+.++|.+.|++..+.+|. +..++....+.++.. |+.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 45666777777654111 35567777777776 37777777777777777764 377777777777764 777777
Q ss_pred HHHHHHHHhCCC
Q 047017 126 NKVLDRLRSRGF 137 (534)
Q Consensus 126 ~~~~~~~~~~~~ 137 (534)
.+.+++......
T Consensus 260 ~~~L~kAL~a~p 271 (301)
T 3u64_A 260 DEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHCCG
T ss_pred HHHHHHHHcCCC
Confidence 777777777633
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.021 Score=42.78 Aligned_cols=101 Identities=8% Similarity=0.097 Sum_probs=66.6
Q ss_pred cChhhHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHh-hHHHHHH------HHHhcCCHhHHHHHHHHHHHc
Q 047017 35 VKETQFMKLIKRSFRAGKF------DESLYFIESMVANGCKPDVV-MCTKLIK------KFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 101 (534)
-++.+|...+..+-+.|+. ++.+++|+++... +||+.. .|..-+. .+...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3677888888888888999 8888999988875 355422 1111111 112336777777777777665
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047017 102 GEPDVFAYNALISGFCKANQIELANKVLDRLRSRG 136 (534)
Q Consensus 102 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 136 (534)
++.-..+|...+..-.++|+...|.+++.+....+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 53336666666666677777777777777777664
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.15 Score=39.88 Aligned_cols=130 Identities=12% Similarity=0.200 Sum_probs=96.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
+...+..|+++.|.++.+.+ .+...|..++......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHH
Confidence 45577899999999998765 3788999999999999999999999998764 566667778889988
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
...++-+.....| -++....++...|+++++.++|.+.-+ -| .........|..+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 8777766666553 355666677789999999999865432 11 1111223356777777777665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.095 Score=38.41 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=63.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 434 RFRPTVISYNIIILGFCKTRRI---NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
+..|+..+--.++++++++.+. .+++.+++...+.+..-....+-.+.-++.+.|++++|+++.+.+++..|.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3466777777788888887764 5688899998886533345666678889999999999999999999999999876
Q ss_pred HHHH
Q 047017 511 FKRL 514 (534)
Q Consensus 511 ~~~l 514 (534)
....
T Consensus 115 ~~Lk 118 (134)
T 3o48_A 115 GALK 118 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.21 Score=37.16 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=62.1
Q ss_pred CCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 436 RPTVISYNIIILGFCKTRRI---NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
.|+..+--.+.+++.++.+. .+++.+++...+.+..-.....-.+.-++.+.|++++|+++.+.+++..|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56777777788888887754 568888888888654334555567788999999999999999999999999987665
Q ss_pred HH
Q 047017 513 RL 514 (534)
Q Consensus 513 ~l 514 (534)
..
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.026 Score=43.27 Aligned_cols=119 Identities=8% Similarity=0.072 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC-------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCC
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANG-CKPD-------VVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPD 105 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~ 105 (534)
-..+..-++.+...|.|+.|+-+.+.++... .+++ ..++..++.++...|++..|...|+.+++.. +..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457788899999999999999888865431 1222 1256778889999999999999999875543 111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047017 106 VFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 106 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
......+. ....... ......+...-.-+..+|.+.+++++|+.+++.+.
T Consensus 100 ~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11110000 0000000 00112234444456677777777777777777654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.031 Score=40.81 Aligned_cols=82 Identities=13% Similarity=-0.006 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHH
Q 047017 88 SNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL---ANKVLDRLRSRGFSP--DVVTYNIMIGSLCSRGMIESAFK 162 (534)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 162 (534)
...+.+.|......++++..+-..++.++++..+... ++.+++.+...+ .| .......|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444444445555555555555555554444 555555555442 12 22333344555666666666666
Q ss_pred HHHHHHhC
Q 047017 163 VFDQLLRD 170 (534)
Q Consensus 163 ~~~~~~~~ 170 (534)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.22 Score=36.48 Aligned_cols=67 Identities=25% Similarity=0.234 Sum_probs=42.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL 295 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (534)
+...+...+..+...|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3445555666666677777777777665432 355666667777777777777777777777766664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.58 E-value=2.3 Score=43.15 Aligned_cols=158 Identities=14% Similarity=0.098 Sum_probs=85.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 047017 269 ILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLI--SAYCKDGRLDLAIEFLDYMISDGCLPDIVN--YNTILAAF 344 (534)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 344 (534)
.+...+...|+.+....++..+.+.. +......+. -++...|+.+.+..+++.+.... .|.... ...+..+|
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAy 570 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHh
Confidence 33444567777777777777766531 333333333 33446788888888877776642 222211 22344556
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 047017 345 CKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMV-DEA 423 (534)
Q Consensus 345 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A 423 (534)
+..|+.....+++..+.... ..+..-...+.-++...|+.+.+..++..+.+.+ .|....-..+..+....|.. .++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 67778766666887776642 2233333333334445666666666666555542 34443333333333444443 567
Q ss_pred HHHHHHHHh
Q 047017 424 VGLLVDMES 432 (534)
Q Consensus 424 ~~~~~~~~~ 432 (534)
..++..+..
T Consensus 649 id~L~~L~~ 657 (963)
T 4ady_A 649 IDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 777777764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.18 E-value=3.2 Score=42.23 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH---------HCCCCCC-HhhHHH----HHHHHHhcCCHh----HHHHHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMV---------ANGCKPD-VVMCTK----LIKKFFQERKSN----KAVRVMEILEK 100 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~-~~~~~~----l~~~~~~~~~~~----~a~~~~~~~~~ 100 (534)
....++..|++.|.+.+|+.+.-++. ...+..+ ...+.. ++.+....-..+ +.+++.-.+..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 35677778888899988887654432 1100001 122222 222222222222 22222222221
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 101 YGEPDVFAYNALISGFCKANQIELANKVLDRLRS 134 (534)
Q Consensus 101 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 134 (534)
.. ...-|..++.+..+.++.+.+.++|..+..
T Consensus 227 k~--~~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 227 NM--PNCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HS--SSCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hC--CchhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 122466777888889999999999999874
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.67 Score=34.03 Aligned_cols=64 Identities=9% Similarity=0.018 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.+...+......|+-+.-.+++..++. +.+|++.....+..+|.+.|+..+|.+++.++.+.|.
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344445555666666666666655443 2345566666666666666666666666666666554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=2.8 Score=40.82 Aligned_cols=325 Identities=9% Similarity=0.020 Sum_probs=166.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDV-VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
....+.|++..+..+...+... +... ..|..+...+ ......+....+...... |.....-...+..+.+.+++.
T Consensus 14 ~~a~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~-p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 14 KQAWDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTL-PPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHhCCCHH
Confidence 3456678888777775554221 2111 1222221111 112334333333322210 222233455566667777877
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhc
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMG 203 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 203 (534)
....++.. .+.+...-.....+....|+..+|......+-..| ...+.....++..+.+.|.+....-.-+--.
T Consensus 90 ~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~ 163 (618)
T 1qsa_A 90 GLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRL 163 (618)
T ss_dssp HHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 76664443 14456666667777888888888888777776665 4455667778888877776654432222223
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhCCC
Q 047017 204 MCKKGMVGQAFQFVRSLESRGCQPDVI-SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV---TYSILISSLCRDGK 279 (534)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 279 (534)
....|+...|..+...+ +++.. ....++....+ ...+...... . .++.. .+...+.-+.+ .+
T Consensus 164 al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~---~--~~~~~~~~~~~~~~~rlar-~d 229 (618)
T 1qsa_A 164 AMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFART---T--GATDFTRQMAAVAFASVAR-QD 229 (618)
T ss_dssp HHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhc---c--CCChhhHHHHHHHHHHHHh-cC
Confidence 34455555555554322 22221 12222222222 2222222111 1 22222 11112222333 37
Q ss_pred hhHHHHHHHHHHHCCCCCCHhcHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 047017 280 TEDAVDVLRAAKEKGLTPDAYSYDPLIS----AYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALE 355 (534)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 355 (534)
.+.|...+....+.. ..+......+-. .....+...++...+...... ..+.....-.+....+.|+++.|..
T Consensus 230 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 788888888776543 223332222222 222334345666666665544 2344334444444556789999998
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 356 IFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS 397 (534)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 397 (534)
.|..+.... .......--+..++...|+.++|..+|..+..
T Consensus 307 ~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888876532 12334444566677788898899888888764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.29 Score=37.61 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=73.9
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYG--EPDV-------FAYNALISGFCKANQIELANKVLDRLRSR--GFSPD 140 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~ 140 (534)
...+..-++.+...|.++.|+-+...+.... +++. .++..++.++...|++..|...|++.++. .+..+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566778888999999999888876655 2331 26778889999999999999999997543 11111
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 141 VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 141 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+...+. ....... ......+...-..+..+|.+.+++++|+.+++.+
T Consensus 100 ~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11111110 0000000 0112345566667899999999999999999986
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.68 E-value=2.8 Score=39.05 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=78.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--H
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDV--GCPPN---VSSYNTMFSALWSSGDKIRALGMISEMLS----KGIEPDE--I 405 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~--~ 405 (534)
...+...+...|++.+|..++..+... +..+. ...+..-++.|...+++.+|..++.++.. ...+|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 344566666666666666666665422 11111 23444455666666777777766666532 1112221 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMEST-RFRPTVISYN----IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLL 480 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 480 (534)
.+...+..+...+++.+|...|.++.+. ....+...+. .++.+..-.+....-..++........-++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 3455555666667777766666555321 0111221111 1111111122111112222222221112345666677
Q ss_pred HHHHHcc--CCHHHHHHHHHHHHHcC
Q 047017 481 IEGIGYG--GWRAEAMELANALVSMH 504 (534)
Q Consensus 481 ~~~~~~~--g~~~~A~~~~~~~~~~~ 504 (534)
+.+|... .+++.+.+.|+..+..+
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHHhchHhhhHHHHHHHHHHhccc
Confidence 7776643 35666666665554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.12 Score=51.26 Aligned_cols=52 Identities=10% Similarity=-0.102 Sum_probs=31.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 448 GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 448 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
.|...|+++-|+++.++++..- +.+..+|..|+.+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445666666666666666642 235666666666666666666666655544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.37 Score=44.00 Aligned_cols=130 Identities=10% Similarity=0.039 Sum_probs=70.0
Q ss_pred ccChhhHHHHHHHHH---hcCChhHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHh-HHHHHHHHHHHcCCCChh
Q 047017 34 DVKETQFMKLIKRSF---RAGKFDESLYFIESMVAN--GCKPDVVMCTKLIKKFFQERKSN-KAVRVMEILEKYGEPDVF 107 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~ 107 (534)
.+|-..|..++.... ..|+.+.|...+++++.. |... .... ...+- .....++... ..
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L-~~~~---------~~~w~~~~r~~l~~~~------~~ 172 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVL-DDLR---------DFQFVEPFATALVEDK------VL 172 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT-GGGT---------TSTTHHHHHHHHHHHH------HH
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC-CCCC---------chhHHHHHHHHHHHHH------HH
Confidence 445566766665443 468999999999998764 3111 1100 00010 0011111111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLR-----DNCKPTVITYT 180 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 180 (534)
+...++..+...|++.++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 33445556666666666666666665541 23555666666667777777776666666543 36666665433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.02 E-value=2.3 Score=45.24 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 144 YNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTV----ITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 144 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
|..++..+.+.|.++.+.+.-...++...+.+. ..|..+...+...|++++|...+..+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 445555555556666555555554443211111 13455555666666666665555443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.47 E-value=3 Score=44.35 Aligned_cols=164 Identities=9% Similarity=0.069 Sum_probs=96.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCC--hHHHHHHHHHHHHcC
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGM--VGQAFQFVRSLESRG 224 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~ 224 (534)
++..+...+.++-+.++... .+.++..-..++.++...|++++|...|.+....-... .-....-+..+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34444455555555443322 23455555678888999999999999999873221110 000111111222211
Q ss_pred C--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 047017 225 C--QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV----VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPD 298 (534)
Q Consensus 225 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (534)
. ..-..-|..++..+-+.+.++.+.++-...++...+-+. ..|..+++.+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 1 112345677888888888888888887777664322121 2467778888888888888888877665432 3
Q ss_pred HhcHHHHHHHHHhcCCHHH
Q 047017 299 AYSYDPLISAYCKDGRLDL 317 (534)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~ 317 (534)
...+..++..++..|..+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhCCChhh
Confidence 4556666666666665443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.48 Score=47.00 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 453 (534)
.=|..|+....+.+.+++|.+.|+..... +-++..+..|+..|...+
T Consensus 614 lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 614 LEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 33555555555555555555555555542 344455555555555444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=7 Score=38.05 Aligned_cols=258 Identities=11% Similarity=0.042 Sum_probs=140.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
.-..-+..+.+.+++......+.. .|.+...-.....+....|+..+|......+-..| .........++..+.+
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHH
Confidence 334455667777887766664443 25677777777888888899888877777766554 2234444455555544
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc---------C
Q 047017 154 RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR---------G 224 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~---------~ 224 (534)
.|.+ +....-.-+......|+...|..+...+. .........+..+... .
T Consensus 149 ~g~l-----------------t~~~~~~R~~~al~~~~~~~a~~l~~~l~----~~~~~~a~~~~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 149 SGKQ-----------------DPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANNPNTVLTFART 207 (618)
T ss_dssp TTCS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred CCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHhCC----HHHHHHHHHHHHHHhChHhHHHHHhc
Confidence 4432 22112222233344455555544444331 0010000111111111 0
Q ss_pred CCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 047017 225 CQPDVIS---YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY----SILISSLCRDGKTEDAVDVLRAAKEKGLTP 297 (534)
Q Consensus 225 ~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (534)
..++... +...+.-+. ..+.+.|...+....... ..+.... ..++......+...++...+...... ..
T Consensus 208 ~~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~ 283 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQ 283 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CC
T ss_pred cCCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CC
Confidence 1222221 111222223 347899999998886543 2233322 23333344455355666666665543 23
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
+.......+....+.|+++.|...|..+.... .......--+..++...|+.++|..+|+.+..
T Consensus 284 ~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44445555555667899999999998886542 22344445566778889999999999999854
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.15 E-value=2 Score=29.63 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 457 ESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
+..+-++.+...++.|++.+..+.+++|.+.+++.-|.++++.+..+-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555555555555555555443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.13 E-value=6.7 Score=35.56 Aligned_cols=167 Identities=11% Similarity=0.015 Sum_probs=101.1
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC---CCHhhHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCChhhH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVAN-GCK---PDVVMCTKLIKKFFQE-RKSNKAVRVMEILEKYGEPDVFAY 109 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~ 109 (534)
..+.....+.+.|...|+.++..+++...... +.- -.......++..+... +..+.-.++.....+........|
T Consensus 17 ~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 17 IKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999999999999998775431 001 1222344556655443 334444444444443221122233
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCH
Q 047017 110 ------NALISGFCKANQIELANKVLDRLRSR--GFSPD---VVTYNIMIGSLCSRGMIESAFKVFDQLLRD--NCKPTV 176 (534)
Q Consensus 110 ------~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~ 176 (534)
..++..|...|++.+|.+++..+.+. ..... ...+..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 26789999999999999998888763 11111 234555667888999999999999887643 222333
Q ss_pred hhHHH----HHHHHH-hcCCHhHHHHHHHH
Q 047017 177 ITYTI----LIQATM-LEGQTDKAMKLLDE 201 (534)
Q Consensus 177 ~~~~~----l~~~~~-~~g~~~~a~~~~~~ 201 (534)
..... -+..+. ..+++..|...|-+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 32211 122344 56777777666654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.80 E-value=6.3 Score=34.58 Aligned_cols=127 Identities=14% Similarity=0.112 Sum_probs=69.9
Q ss_pred HHHHHhcCCh---hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 44 IKRSFRAGKF---DESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 44 ~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
++..+..|+| =+|.+.++.+ ..-|.+.+++++|++++..-. ..+.+.|
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~RTi---------------~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~ 69 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETRLV---------------AARYSKQGNWAAAVDILASVS--------------QTLLRSG 69 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHH--------------HHHHHTT
T ss_pred HHHHHhCCCCccccHHHHHHHHH---------------HHHHHhhcCHHHHHHHHHHHH--------------HHHHHCC
Confidence 4455667777 6666665443 334677788888888764422 2344556
Q ss_pred CHHHHHHHH----HHHHhCCCCCChhhHHHHHHHHHcCCCHH-HHHHHHHHHHh----CC--CCCCHhhHHHHHHHHHhc
Q 047017 121 QIELANKVL----DRLRSRGFSPDVVTYNIMIGSLCSRGMIE-SAFKVFDQLLR----DN--CKPTVITYTILIQATMLE 189 (534)
Q Consensus 121 ~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~ 189 (534)
+...|.++. +-..+.++++|......++..+.....-+ .-..+.+.+++ .| ..-++.....++..|.+.
T Consensus 70 Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e 149 (336)
T 3lpz_A 70 QGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEE 149 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc
Confidence 655554443 44444566677666666666655544311 11223333322 11 233555666677777777
Q ss_pred CCHhHHHHHH
Q 047017 190 GQTDKAMKLL 199 (534)
Q Consensus 190 g~~~~a~~~~ 199 (534)
+++.+|...|
T Consensus 150 ~~~~~Ae~H~ 159 (336)
T 3lpz_A 150 GEFEAAEKHL 159 (336)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7777666655
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.78 E-value=8.2 Score=35.88 Aligned_cols=194 Identities=12% Similarity=0.138 Sum_probs=116.9
Q ss_pred cCChhHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH----hcC
Q 047017 50 AGKFDESLYFIESMVAN-----GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC----KAN 120 (534)
Q Consensus 50 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 120 (534)
.|++++|++.+-.+.+. +..........++..+...|+++...+.+..+.+.......+...++..+. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777555431 234456667888999999999999988887777655433444444444332 223
Q ss_pred CHHH--HHHHHHHHHhC--C-CCC---ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHH
Q 047017 121 QIEL--ANKVLDRLRSR--G-FSP---DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD--NCKPT---VITYTILIQATM 187 (534)
Q Consensus 121 ~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 187 (534)
..+. -..+.+.+... | +.. .......|...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2222 11222211111 1 111 1123356788899999999999999998643 21111 346677788899
Q ss_pred hcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 188 LEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD--VISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 188 ~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
..+++.+|..++.++. ........+|+ ...+...+..+...+++.+|-..|.++..
T Consensus 189 ~~~d~~~a~~~~~ki~--------------~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKIL--------------KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHH--------------HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH--------------HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999988887751 01112222222 13455566677778888888777766643
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.72 E-value=2.3 Score=31.68 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=55.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHh---HHHHHHHHHHHcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047017 69 KPDVVMCTKLIKKFFQERKSN---KAVRVMEILEKYGE-PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV 141 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 141 (534)
.++..+.....-++.++.+.. +++.+++.+...++ ........++-++.+.|++++|.++.+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 567777777777888877654 67888888887664 45567777888899999999999999999987 6653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.53 E-value=8.2 Score=33.59 Aligned_cols=131 Identities=10% Similarity=0.090 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
..-++..+..|++=+|.+.++.+. .-|.+++++++|++++..-. ..+.+.|
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~---------------~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~ 67 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIA---------------NRYVRSKSYEHAIELISQGA--------------LSFLKAK 67 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHH--------------HHHHHTT
T ss_pred HHHHHHHhhccChHHHHHHHHHHH---------------HHHHHhcCHHHHHHHHHHHH--------------HHHHHCC
Confidence 334556667777777777765543 34677788888887765432 2344556
Q ss_pred CHHHHHHH----HHHHHhCCCCCChhhHHHHHHHHHcCCCHH-HHHHHHHHHHh----CC--CCCCHhhHHHHHHHHHhc
Q 047017 121 QIELANKV----LDRLRSRGFSPDVVTYNIMIGSLCSRGMIE-SAFKVFDQLLR----DN--CKPTVITYTILIQATMLE 189 (534)
Q Consensus 121 ~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~ 189 (534)
+...|.++ ++-..+.+++++......++..+.....-+ .-.++++.+++ .| ..-++.....++..|.+.
T Consensus 68 Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e 147 (312)
T 2wpv_A 68 QGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG 147 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc
Confidence 65555443 444555577777777777776665533211 12333333332 22 123667788888888888
Q ss_pred CCHhHHHHHHH
Q 047017 190 GQTDKAMKLLD 200 (534)
Q Consensus 190 g~~~~a~~~~~ 200 (534)
|++.+|...|-
T Consensus 148 ~~~~~A~~H~i 158 (312)
T 2wpv_A 148 DFVYEAERYFM 158 (312)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88888877664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.48 E-value=2.2 Score=31.30 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=56.4
Q ss_pred CCCCHhhHHHHHHHHHhcCCH---hHHHHHHHHHHHcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047017 68 CKPDVVMCTKLIKKFFQERKS---NKAVRVMEILEKYGE-PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV 141 (534)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 141 (534)
..++..+-....-+++++.+. .+++.+++.+.+.++ .....+..++-++.+.|++++|.+..+.+.+. .|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 366777777777788877765 467888888887764 45677788888999999999999999999987 6653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=2.4 Score=38.66 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=28.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 396 (534)
++..+...|++.+++..+..+.... |.+...+..++.++.+.|+..+|+..|+.+.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555554442 4445555555555555555555555555443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.93 E-value=3.4 Score=28.31 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=50.9
Q ss_pred cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 047017 85 ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVF 164 (534)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 164 (534)
....++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++...+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 3455666666666665433 22222223345566777777777766554 667777766544 4566667777777
Q ss_pred HHHHhCCCCCCHhhH
Q 047017 165 DQLLRDNCKPTVITY 179 (534)
Q Consensus 165 ~~~~~~~~~~~~~~~ 179 (534)
.++...| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666665 4444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.43 E-value=3.3 Score=28.36 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=52.0
Q ss_pred cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 047017 85 ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVF 164 (534)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 164 (534)
....++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++...+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 3456667666666665443 22222223445667788888777665554 667777766544 4667777777777
Q ss_pred HHHHhCCCCCCHhhH
Q 047017 165 DQLLRDNCKPTVITY 179 (534)
Q Consensus 165 ~~~~~~~~~~~~~~~ 179 (534)
.++...| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6776665 4444444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.96 E-value=4.5 Score=29.64 Aligned_cols=55 Identities=5% Similarity=-0.014 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 458 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
..+-++.+...++.|++.+....+++|.+.+|+.-|.++++-+..+-....+.|.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~ 126 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYP 126 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHH
Confidence 4444555555666666666666666666666666666666666655433343343
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.93 E-value=4 Score=34.36 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=38.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
...+.|+++++++.+..-++.. +-|...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456777888887777766653 335666667777778888888888777777765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.85 E-value=14 Score=32.52 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHhcHHHHHH
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVL----RAAKEKGLTPDAYSYDPLIS 307 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~ 307 (534)
|.++..-|.+.+++++|++++..-. ..+.+.|+...+.++. +-..+.+++++......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4445555777777777777664422 2244555554444433 44445667777777667776
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 047017 308 AYCKDGRLD-LAIEFLDYMIS----DG--CLPDIVNYNTILAAFCKNGNADQALEIF 357 (534)
Q Consensus 308 ~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 357 (534)
.+.....-+ .=..+++.+++ .+ ..-|+.....+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 665544311 11222222221 11 2235566666777777777777776655
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.64 E-value=5.3 Score=27.58 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=16.4
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 355 EIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
+-++.+.....-|++......+.+|.+.+++..|..+++.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444333
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.99 E-value=2.5 Score=35.50 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=31.5
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 82 FFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+.+.|++++|+.....-.+..|.|...-..++..++-.|++++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345555666666555555555556665566666666666666666655555544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.66 E-value=3.5 Score=28.24 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=18.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
-||...|..+. -.+.|-.+++...+..+...|
T Consensus 68 ~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 68 YPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 45666665543 345666666666666665554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.25 E-value=15 Score=33.89 Aligned_cols=99 Identities=10% Similarity=-0.081 Sum_probs=69.8
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhh--
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSR---GFSPDVVT-- 143 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~-- 143 (534)
..+...++..+.+.|+++.|.+.+..+...- ..-...+..+++.+...+++..+...+.++... +..|+...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 4467788899999999999999998887654 334567888889999999999999998887543 22222211
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 144 YNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 144 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
...-+..+...+++..|-..|-++...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111223345678898888888776543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.29 E-value=10 Score=27.82 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
+..+-++.+...+.-|++......++++.+.+++..|.++|+-++..-.+...+|..+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 4444444444445555555555555555555555555555555554432333334433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.99 E-value=3.4 Score=28.27 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=19.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
-||...|..+. -.+.|-.+.+...+..+...|
T Consensus 67 ~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 67 WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 45655555443 346677777776666665554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.56 E-value=9.2 Score=35.37 Aligned_cols=116 Identities=12% Similarity=-0.043 Sum_probs=79.6
Q ss_pred CHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHcCCCHHHHH
Q 047017 87 KSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSR--GFSPDVVTYNIMIGSLCSRGMIESAF 161 (534)
Q Consensus 87 ~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~ 161 (534)
..++-........+.. ..-..+...++..|.+.|+++.|.+.|.++... +...-...+...++.+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3444445555555533 224457888999999999999999999999865 22334667888899999999999999
Q ss_pred HHHHHHHhC---CCCCCHhh--HHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 162 KVFDQLLRD---NCKPTVIT--YTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 162 ~~~~~~~~~---~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+.++... +..++... ...-+..+...+++..|...|-++
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 999987643 22222211 111122344678999998888775
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.31 E-value=16 Score=29.20 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047017 418 GMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 418 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
+...++.++|..|...|+-.. ...|...+..+...|++.+|.++|+..++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666554433 3345555666666666666666666666665555
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.16 E-value=15 Score=29.34 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047017 382 SGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRP 437 (534)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (534)
.++...+..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446788888888887765443 4567777777888899999999988888776555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 534 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 7e-10
Identities = 63/392 (16%), Positives = 127/392 (32%), Gaps = 29/392 (7%)
Query: 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMC-TKLIKKFFQERKSNKAVRVMEILE 99
M+L R ++AG F+ + + +PD L FQ R+ +++ +
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 100 KYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIES 159
K AY+ L G + +L + + PD + I + +
Sbjct: 61 KQNPLLAEAYSNL--GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 160 AFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRS 219
+ L G+ ++A + +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 220 LESRGC--------------QPDVI-SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV 264
++G P+ + +Y L L ++ +S +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237
Query: 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPD-AYSYDPLISAYCKDGRLDLAIEFLD 323
V + L G + A+D R A E L P +Y L +A + G + A + +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 324 YMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG 383
+ C + N + + GN ++A+ ++ K +V P ++++ + S L G
Sbjct: 296 TALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQG 353
Query: 384 DKIRALGMISEMLSKGIEPDEI-TYNSLISCL 414
AL E + I P Y+++ + L
Sbjct: 354 KLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 1e-07
Identities = 36/249 (14%), Positives = 76/249 (30%), Gaps = 29/249 (11%)
Query: 139 PDVVTYNIMIGS-LCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMK 197
P+ +G ++G I A F++ + + + Y L D+A+
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVA 224
Query: 198 LLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257
+ + L G + I
Sbjct: 225 AYLRALSLSPNHA-------------------VVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 258 RGLEPNVV-TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316
L+P+ Y L ++L G +A D A A S + L + + G ++
Sbjct: 266 --LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322
Query: 317 LAIEFLDYMISDGCLPDIVN-YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTM 375
A+ + P+ ++ + + + G +AL +++ + P +Y+ M
Sbjct: 323 EAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNM 379
Query: 376 FSALWSSGD 384
+ L D
Sbjct: 380 GNTLKEMQD 388
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.8 bits (95), Expect = 2e-04
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 8/124 (6%)
Query: 276 RDGKTEDAVDVLRAAKEKGLTP-DAYSYDPLISAYCKDGRLDLAIEFLDYMISD--GCLP 332
+G+ + A+++L A + +P DA I C DG + A E L I LP
Sbjct: 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMI 392
++ A + +G ++ F+ S D + +
Sbjct: 66 GASQLRHLVKAAQAR---KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 393 SEML 396
++
Sbjct: 123 LQIE 126
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 534 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.45 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.44 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.39 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.34 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.33 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.33 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.31 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.05 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.99 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.98 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.98 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.91 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.9 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.88 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.87 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.86 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.85 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.85 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.83 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.82 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.74 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.71 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.64 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.62 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.59 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.31 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.18 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.17 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.98 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.73 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.64 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.54 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.2 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.1 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.76 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.3 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.98 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.49 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 83.55 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 81.24 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3e-25 Score=206.14 Aligned_cols=383 Identities=15% Similarity=0.081 Sum_probs=255.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 047017 78 LIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMI 157 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 157 (534)
++..+.+.|++++|++.++.+.+..|.++.++..++.++.+.|++++|...|+++.+.. +.+..+|..++.+|...|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 45566677777777777777777767777777777777777777777777777776652 22456666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 047017 158 ESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLR 237 (534)
Q Consensus 158 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (534)
++|...+..+.... +.+..............+....+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 123 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQA--------------------------------------- 123 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHH---------------------------------------
T ss_pred cccccccccccccc-cccccccccccccccccccccccccc---------------------------------------
Confidence 77777777666554 33333333333333333333222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHH
Q 047017 238 TLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDL 317 (534)
Q Consensus 238 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (534)
........ .................+....+...+....... +.+...+..+...+...|+++.
T Consensus 124 --------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 187 (388)
T d1w3ba_ 124 --------------YVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp --------------HHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred --------------cccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHH
Confidence 22222211 1122233333333444455555555555544432 2244455556666666666777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 318 AIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS 397 (534)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 397 (534)
|...++++.+.. +.+...+..++..+...|++++|+..+++..... +.+...+..+...+...|++++|+..++++.+
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 265 (388)
T d1w3ba_ 188 AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 776666666543 3355666677777777777777777777776654 55666777777777788888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047017 398 KGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTY 477 (534)
Q Consensus 398 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 477 (534)
.. +.+..++..+..++...|++++|.+.++..... .+.+...+..+...+...|++++|+..++++++..+ .+..++
T Consensus 266 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 342 (388)
T d1w3ba_ 266 LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAH 342 (388)
T ss_dssp TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 52 334667777888888888888888888877765 344667778888888889999999999998887643 267788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
..++.++...|++++|+..|+++++.+|..++++..++.+|...|
T Consensus 343 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 889999999999999999999999999999999999998887655
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-24 Score=202.09 Aligned_cols=384 Identities=15% Similarity=0.089 Sum_probs=232.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ 121 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 121 (534)
.+...+.+.|++++|++.++++++.. |.+..++..++.++...|++++|+..|+.+.+.+|.+..++..++.++.+.|+
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 36678899999999999999998875 66788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 122 IELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+++|.+.+....... +.+...+..........+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 999999999998773 3344555555555555666666666555555443 33344444444455555555555554444
Q ss_pred hcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChh
Q 047017 202 MGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTE 281 (534)
Q Consensus 202 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (534)
. ... .+.+...+..+...+...|++++|...++..+.... -+...+..+...+...|+++
T Consensus 161 ~------------------~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~ 220 (388)
T d1w3ba_ 161 A------------------IET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp H------------------HHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTT
T ss_pred h------------------hcc-CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHH
Confidence 3 222 123445555666666666666666666666655421 13445555555555666666
Q ss_pred HHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 047017 282 DAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLS 361 (534)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 361 (534)
+|...++.....+ +.+...+..+...+.+.|++++|...++++.+.. +.+..++..++..+...|++++|+..++...
T Consensus 221 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 221 RAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 6666555555442 2233444445555555555555555555554442 2234444444445555555555555554444
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 047017 362 DVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVIS 441 (534)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 441 (534)
... |.+.. .+..+..++...|++++|...+++..+.. +.+..+
T Consensus 299 ~~~-~~~~~-----------------------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 341 (388)
T d1w3ba_ 299 RLC-PTHAD-----------------------------------SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAA 341 (388)
T ss_dssp HHC-TTCHH-----------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred ccC-Cccch-----------------------------------hhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 432 33444 44444444555555555555555544431 113344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 442 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
+..++.++...|++++|...++++++..+. +..++..++.+|.+.|
T Consensus 342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 342 HSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 445555555555555555555555544221 3445555555555444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=6.1e-16 Score=138.71 Aligned_cols=254 Identities=13% Similarity=0.054 Sum_probs=162.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcC
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDG 313 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (534)
..+..+.+.|++++|+..|+++++..+. +..+|..++.++...|++++|...+.++.+.. +-+...+..++..|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 4555666677777777777776665322 45566666666677777777777776666653 224555666666666667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 314 RLDLAIEFLDYMISDGCLPDIVN-YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMI 392 (534)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 392 (534)
++++|.+.++.+.... |+... ........ . ..+.......+..+...+.+.++...+
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 7777766666666542 11100 00000000 0 000001111122233445567777888
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 393 SEMLSKG-IEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 393 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
.++.+.. -.++..++..+...+...|++++|...+++..... +.+...|..++.++...|++++|++.++++++..+
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP- 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-
Confidence 7776542 23356777888888999999999999999987753 33577888899999999999999999999998753
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHH
Q 047017 472 PNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKR 513 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 513 (534)
-+..++..++.+|.+.|++++|+..|+++++..|.+......
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 279 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence 367788899999999999999999999999987776654443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=6.4e-16 Score=138.55 Aligned_cols=240 Identities=12% Similarity=0.025 Sum_probs=152.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 047017 270 LISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGN 349 (534)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (534)
.+..+.+.|++++|+..|+++.+.. +.+...+..++.++...|++++|...+.++.+.. +.+...+..++.+|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 3444555555555555555555542 2234455555555555555555555555555442 2334445555555555555
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 350 ADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVD 429 (534)
Q Consensus 350 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 429 (534)
+++|...++.+.... +.....+........ ..+.......+..+...+.+.+|...+.+
T Consensus 103 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYT-PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTS-TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc-cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 555555555554432 111111000000000 00000011112233455677888888888
Q ss_pred HHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 430 MESTRF-RPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 430 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
..+... .++..++..+...+...|++++|+..+++++...+. +..+|..++.++...|++++|.+.|+++++.+|..+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 776432 235667888899999999999999999999987533 688899999999999999999999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 509 DTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 509 ~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.++..++.+|...|++++|+..+.|
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLE 265 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=1e-12 Score=117.64 Aligned_cols=281 Identities=10% Similarity=-0.005 Sum_probs=206.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHH---HH-------HHhCCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPNV-VTYSILI---SS-------LCRDGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~---~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
++......+..++|+++++.+++. .|+. ..|+... .. +...|++++|+.+++.+.+.. +-+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333444458999999999876 3443 3343222 22 223445788999999988864 33666777
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047017 304 PLISAYCKDG--RLDLAIEFLDYMISDGCLPDIVNY-NTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALW 380 (534)
Q Consensus 304 ~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (534)
.+..++...+ ++++|...+..+.... +++...+ ......+...+.++.|+..++.+.+.. |.+...|..+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 7777777665 4889999999998874 4455554 455577778899999999999999886 778899999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047017 381 SSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIE 460 (534)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 460 (534)
..|++++|...+....+. .|+. ..+...+...+..+++...+....... +++...+..++..+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHH
Confidence 999988876665544432 1111 123334455677788888888877653 3455566677778888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHh
Q 047017 461 VLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEI 527 (534)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 527 (534)
.+.+..+.++ .+..++..++.++...|++++|.++++++++.+|.....|..|+..+...+.+.++
T Consensus 264 ~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~~~~ 329 (334)
T d1dcea1 264 ELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 329 (334)
T ss_dssp HHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHHHHH
Confidence 9999877642 25677888999999999999999999999999999999999999888866655554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.6e-11 Score=106.75 Aligned_cols=203 Identities=5% Similarity=0.004 Sum_probs=157.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQER-KSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
.|..+...+.+.+.+++|+.+++++++.+ |.+..+|+..+.++...| ++++|+..++.+...+|.+..+|..+..++.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 34455566778899999999999999986 778889999999988876 4899999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
+.|++++|++.++++.+.. +.+...|..+..++...|++++|++.++++++.+ +.+...|+.+..++.+.+....
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~--- 198 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND--- 198 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS---
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch---
Confidence 9999999999999999873 3468899999999999999999999999999986 6778888888777666554321
Q ss_pred HHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 198 LLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 198 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
.+.+++|+..+....... +.+...|+.+...+. ....+++.+.++...+.
T Consensus 199 ---------~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 199 ---------RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDL 248 (315)
T ss_dssp ---------HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH
T ss_pred ---------hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHh
Confidence 122333444444445543 235566666655443 33456666666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.9e-10 Score=99.85 Aligned_cols=216 Identities=9% Similarity=0.023 Sum_probs=169.3
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN-QIELANKVLDRLRSRGFSPDVVTYNIMIGS 150 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (534)
..++..+...+.+.+.+++|+.+++.++..+|.+..+|+....++...| ++++|+..++.+.+.. +-+..+|..+..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 4566677778888999999999999999999999999999999998876 5899999999998773 3468899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHh
Q 047017 151 LCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVI 230 (534)
Q Consensus 151 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 230 (534)
+.+.|++++|+..++++++.. |.+...|..++.++...|++++|++.++++ .+.+ +.+..
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~a------------------l~~~-p~n~~ 181 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQL------------------LKED-VRNNS 181 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH------------------HHHC-TTCHH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHH------------------HHHC-CccHH
Confidence 999999999999999999886 778999999999999999999999888876 4443 33667
Q ss_pred hHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhcHH
Q 047017 231 SYNMLLRTLLNMGK------WEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTP-DAYSYD 303 (534)
Q Consensus 231 ~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 303 (534)
.|+.+..++.+.+. +++|+..+..++... +.+...|..+...+. ....+++...++...+....+ +...+.
T Consensus 182 a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 259 (315)
T d2h6fa1 182 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIA 259 (315)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHH
Confidence 78877777766555 578888888888774 236666776666554 444677788887777643222 333444
Q ss_pred HHHHHHH
Q 047017 304 PLISAYC 310 (534)
Q Consensus 304 ~l~~~~~ 310 (534)
.++..|.
T Consensus 260 ~l~~~y~ 266 (315)
T d2h6fa1 260 FLVDIYE 266 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.7e-10 Score=104.19 Aligned_cols=273 Identities=12% Similarity=0.033 Sum_probs=189.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CC----HhcH
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN----VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLT-PD----AYSY 302 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 302 (534)
.......+...|++++|+.++++.+......+ ...+..+...+...|++++|...++++.+.... ++ ...+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33445667889999999999999887632211 235667778888999999999999887653111 11 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC----CCCHhh
Q 047017 303 DPLISAYCKDGRLDLAIEFLDYMISD----GCLP---DIVNYNTILAAFCKNGNADQALEIFEKLSDVGC----PPNVSS 371 (534)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~ 371 (534)
..+...+...|++..+...+...... .... ....+..+...+...|+++.+...+........ ......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 55667788889999999888776542 1111 123455677788889999999998888765421 222344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhH
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSK----GIEP--DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISY 442 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 442 (534)
+......+...+++..+...+.+.... +..+ ....+..+...+...|++++|...+++........+ ...+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 556667778888888888887766532 1111 123455666778889999999999988765433222 3345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFE----KGCKPN-ETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
..+..++...|++++|...+++++. .+..|+ ..++..+..++...|++++|.+.+++++++.
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 5678888999999999999988874 233332 4567778889999999999999999988753
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=3.3e-10 Score=102.24 Aligned_cols=271 Identities=11% Similarity=0.062 Sum_probs=161.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHH
Q 047017 78 LIKKFFQERKSNKAVRVMEILEKYGEPD-----VFAYNALISGFCKANQIELANKVLDRLRSRGF-SPD----VVTYNIM 147 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 147 (534)
....+...|++++|+.+++......|.+ ..++..+..++...|++++|...|++..+... .++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3445555666666666666655544332 12455556666666677766666666543210 011 2334455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC----CCCC---CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHH
Q 047017 148 IGSLCSRGMIESAFKVFDQLLRD----NCKP---TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220 (534)
Q Consensus 148 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 220 (534)
...+...|++..+...+...... +.+. ....+..+...+...|+++.+...+.... ...
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~--------------~~~ 163 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI--------------EVL 163 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH--------------HHh
Confidence 66677778888777777765532 1111 12345566777888888888888777651 000
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047017 221 ESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG--LEP----NVVTYSILISSLCRDGKTEDAVDVLRAAKEKG 294 (534)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (534)
...+.......+......+...+++..+...+....... ... ....+......+...|+++.|...++......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 243 (366)
T d1hz4a_ 164 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243 (366)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 111122233455566667778888888888777665431 111 12234555667778888888888887766543
Q ss_pred CCCC---HhcHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 295 LTPD---AYSYDPLISAYCKDGRLDLAIEFLDYMISD----GCLP-DIVNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 295 ~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
...+ ...+..+..++...|++++|...++.+... +..| ...++..+..+|...|++++|.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2222 223445677788888888888888776532 2222 234566677788888888888888877654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=5.6e-12 Score=112.78 Aligned_cols=250 Identities=4% Similarity=-0.092 Sum_probs=153.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----------hcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 51 GKFDESLYFIESMVANGCKPDVVMCTKLIKKFF----------QERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 51 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
+..++|+.+++++++.. |.+..+|+.....+. ..|++++|+..++.+.+.+|.+..+|..+..++...+
T Consensus 43 ~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence 34589999999998865 455666654443332 3344778899999998888888888888888877765
Q ss_pred C--HHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 047017 121 Q--IELANKVLDRLRSRGFSPDVVTYN-IMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 121 ~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
+ +++|...+.++.+.. +++...+. .....+...+.+++|+..++.++..+ |.+...|..+..++...|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 4 788998998888763 33455554 44467777888999999999888876 6678888888888888888877655
Q ss_pred HHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC
Q 047017 198 LLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRD 277 (534)
Q Consensus 198 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (534)
.+... ..++.. .......+...+..+++...+....... +++...+..++..+...
T Consensus 200 ~~~~~-----------~~~~~~------------~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 200 QGRLP-----------ENVLLK------------ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVL 255 (334)
T ss_dssp CCSSC-----------HHHHHH------------HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHH
T ss_pred HHHHh-----------HHhHHH------------HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH
Confidence 44332 111100 0111222333344444555555544442 22333444444445555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 278 GKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD 328 (534)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (534)
+++++|...+.+..+.. +.+...+..++.++...|++++|.+.++.+.+.
T Consensus 256 ~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 256 QSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555555555554432 113334444555555555555555555555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=5.6e-10 Score=98.05 Aligned_cols=194 Identities=8% Similarity=-0.038 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 313 GRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMI 392 (534)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 392 (534)
+..++|..++++.++...+.+...+...+......|+++.|..+|+++.+.........|...+..+.+.++.+.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888754455667788888888889999999999999887642222446788888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-
Q 047017 393 SEMLSKGIEPDEITYNSLISC-LCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGC- 470 (534)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 470 (534)
..+.+.+ +.+...|...+.. +...|+.+.|..+|+.+.+. .+.+...|..++..+...|+++.|..+|+++++...
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9988764 3344444444433 34468899999999998875 344677888899999999999999999999988542
Q ss_pred CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 471 KP--NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 471 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
.| ....|...+..-...|+.+.+..+++++.+..|...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 33 245777777777788999999999999988877543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=2.2e-10 Score=100.74 Aligned_cols=180 Identities=9% Similarity=0.025 Sum_probs=141.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047017 349 NADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLV 428 (534)
Q Consensus 349 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 428 (534)
..++|..+|+++.+...|.+...+...+..+...|+++.|..+++++++........+|..++..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45788999999987655667778888899999999999999999999986433335678899999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 429 DMESTRFRPTVISYNIIILG-FCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
++.+... .+...|...+.. +...|+.+.|..+|+.+++.. +.+...|..+++.+...|+.+.|+.+|+++++..+.+
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 9987643 244445444433 345689999999999999874 3468899999999999999999999999999988765
Q ss_pred hH----HHHHHHhhcchHHHHHHhhhh
Q 047017 508 RD----TFKRLNRTFPLLDVYKEISHL 530 (534)
Q Consensus 508 ~~----~~~~l~~~~~~~~~~~~~~~~ 530 (534)
+. .|......-...|+.+.+..+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~ 263 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 53 566666555555665555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=3.9e-11 Score=102.95 Aligned_cols=222 Identities=14% Similarity=-0.030 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHCCCCC---CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 047017 280 TEDAVDVLRAAKEKGLTP---DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEI 356 (534)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 356 (534)
.+.++.-++++....... ...++..++.+|.+.|++++|...|++++... +.++.++..++.++...|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344455555554432111 12355566777777888888888887777764 45667777788888888888888888
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047017 357 FEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFR 436 (534)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 436 (534)
|+++.+.. |.+..++..++.++...|++++|...++...+.. +.+......+..++.+.+..+.+..+....... .
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 169 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--D 169 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--C
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--c
Confidence 88877764 5566777777777888888888888887777653 223444444444455555555555555444443 2
Q ss_pred CChhhHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 437 PTVISYNIIILGFCKTRR----INESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
+....+. ++..+..... .+.+...+....... +-...++..++..+...|++++|...|++++..+|.+-
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 2222222 2222222111 122222221111110 01234566788889999999999999999999888654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=5.8e-11 Score=101.85 Aligned_cols=143 Identities=10% Similarity=-0.090 Sum_probs=107.7
Q ss_pred ChhHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 52 KFDESLYFIESMVANGCK---PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 52 ~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
+.+.|+.-+++++..... ....++..++.++.+.|++++|+..|++....+|.++.+|..++.++.+.|++++|++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 445666666776654211 13457788889999999999999999999999899999999999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 047017 129 LDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 196 (534)
|+++.+.. +.+..++..+..+|...|++++|...|+..++.. +.+......+...+.+.+..+.+.
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKE 159 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHH
Confidence 99998873 3356778888899999999999999999988775 445554444444444444443333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=3.8e-09 Score=77.06 Aligned_cols=108 Identities=10% Similarity=-0.030 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
.-+..+...|++++|...|++.++.. +.+...|..+..++...|++++|+..+.++++.++ .+...|..++.++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHcc
Confidence 44667889999999999999998863 44678899999999999999999999999999864 48889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 489 WRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 489 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
++++|+..|+++++..|.++..+..+.++-
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 999999999999999999999988887653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=1.3e-08 Score=79.20 Aligned_cols=121 Identities=10% Similarity=0.033 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047017 407 YNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGY 486 (534)
Q Consensus 407 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 486 (534)
+...+..|.+.|++++|...|+++++.. +.+...|..+..+|...|++++|+..|+++++.++. +..+|..++.++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence 3344667888999999999999998864 336778888999999999999999999999987633 67888899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcch--HHHHHHhhh
Q 047017 487 GGWRAEAMELANALVSMHAISRDTFKRLNRTFPL--LDVYKEISH 529 (534)
Q Consensus 487 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 529 (534)
.|++++|...++++++..|.++.++..+..+... .+.++++..
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888887766543 344555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.4e-08 Score=73.95 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
..-...++..|++++|+..|+++++.. |.+...|..++.++...|++++|+..++.+...+|.++.+|..++.++...|
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 344556667777777777777776654 5566667777777777777777777777777766777777777777777777
Q ss_pred CHHHHHHHHHHHHhC
Q 047017 121 QIELANKVLDRLRSR 135 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~ 135 (534)
++++|+..|++..+.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2.3e-08 Score=80.22 Aligned_cols=123 Identities=9% Similarity=-0.024 Sum_probs=102.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
...+...|++++|++.|+++ .++++.+|..++.++...|++++|+..|++..+.+|.++.+|..+..++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 56678899999999999864 25678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 124 LANKVLDRLRSRGFSPD----------------VVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
+|.+.|++..... +.+ ..++..+..++...|++++|.+.++......
T Consensus 88 ~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 88 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999987541 111 2345566777888888888888888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=2e-08 Score=87.05 Aligned_cols=202 Identities=12% Similarity=0.017 Sum_probs=133.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC----CC-CCCHhhHHH
Q 047017 305 LISAYCKDGRLDLAIEFLDYMISD----GCLP-DIVNYNTILAAFCKNGNADQALEIFEKLSDV----GC-PPNVSSYNT 374 (534)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~ 374 (534)
.+..|...+++++|.+.|.++.+. +.++ -..+|..++.+|.+.|++++|+..+++..+. +. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355677788888888888777652 1111 1356777888888888898888888876543 10 011344556
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhH
Q 047017 375 MFSALWS-SGDKIRALGMISEMLSK----GIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTV------ISY 442 (534)
Q Consensus 375 l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~ 442 (534)
++..|.. .|++++|+..+.++.+. +.++ ...++..++..+...|++++|...++++......... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6666644 58999999999887642 2111 1345777888999999999999999998765322211 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHc--cCCHHHHHHHHHHHHHcCCC
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFEKGCK-PN---ETTYVLLIEGIGY--GGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~ 506 (534)
...+.++...|+++.|...++++.+..+. ++ ......++.++.. .+.+++|+..|+++.++++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence 44556677889999999999998775322 11 2344566666654 34688999988877666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.90 E-value=6.4e-06 Score=69.76 Aligned_cols=223 Identities=12% Similarity=0.000 Sum_probs=107.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 267 YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILA 342 (534)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (534)
+..+...+...+|+++|++.|++..+.| +...+..|...|.. ..+...|...+......+ ++.....+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3334444444444555555554444433 33333344444433 334445555554444433 2222222222
Q ss_pred HHHh----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 343 AFCK----NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS----SGDKIRALGMISEMLSKGIEPDEITYNSLISCL 414 (534)
Q Consensus 343 ~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 414 (534)
.+.. ..+.+.|...++...+.| .......+...+.. ......+...+...... .+...+..+...+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 2221 234445555555554443 11222222222221 22344455555444442 2344444455544
Q ss_pred Hh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047017 415 CR----DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGY 486 (534)
Q Consensus 415 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 486 (534)
.. ..+...+...++...+.| +......+...|.. ..++++|+.+|++..+.| ++..+..|+..|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN 226 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred ccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHc
Confidence 43 344555666666655533 44444445544443 456777888887777765 34555566666654
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCc
Q 047017 487 ----GGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 487 ----~g~~~~A~~~~~~~~~~~~~~ 507 (534)
..+.++|.++|+++.+.+..+
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCCccCHHHHHHHHHHHHHCcCHH
Confidence 336777888888887776543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.88 E-value=8.5e-09 Score=74.42 Aligned_cols=91 Identities=11% Similarity=-0.091 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 442 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
+..++..+.+.|++++|+..++++++..+. +..+|..++.++.+.|++++|+..++++++.+|..+.++..++.+|...
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 345677788999999999999999998643 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcc
Q 047017 522 DVYKEISHLATK 533 (534)
Q Consensus 522 ~~~~~~~~~~~k 533 (534)
|++++|.+.++|
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999988764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=9.1e-09 Score=75.10 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=90.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR---INESIEVLAAMFEKGCKPN-ETTYVLLIEG 483 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 483 (534)
..++..+...+++++|.+.|++....+ +.+..++..++.++.+.++ +++|+.++++++..+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777888899999999999998864 4467888888988887554 4579999999988654444 3467889999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 484 IGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
|.+.|++++|+++|+++++.+|.+..+...+..+....
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887776555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.86 E-value=6.8e-06 Score=69.59 Aligned_cols=226 Identities=12% Similarity=0.012 Sum_probs=165.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR----DGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
|+..+..|...+...+++++|+++|++..+.| +...+..|...|.. ..+...|...+......+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45567778888889999999999999998876 56667777777765 668899999999988865 444455
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 047017 304 PLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK----NGNADQALEIFEKLSDVGCPPNVSSYNTM 375 (534)
Q Consensus 304 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 375 (534)
.+...+.. ..+.+.|...++...+.+. ......+...+.. ......+...+...... .+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 55555543 4678889999999888762 3333334444433 44567777777777664 366777778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 376 FSALWS----SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR----DGMVDEAVGLLVDMESTRFRPTVISYNIIIL 447 (534)
Q Consensus 376 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 447 (534)
...+.. ..+...+...++...+.| +......+...|.. ..++++|..+|.+..+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 777775 457778888888888754 55666667666665 568999999999998875 4556667777
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCC
Q 047017 448 GFCK----TRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 448 ~~~~----~g~~~~A~~~~~~~~~~~~~ 471 (534)
.|.. ..+.++|.++|+++.+.|..
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 7765 44889999999999988744
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=6.9e-08 Score=75.63 Aligned_cols=87 Identities=11% Similarity=-0.091 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.+|..+..+|.+.|++++|+..++++++.++. +..++..++.++...|++++|+..|+++++++|.++.+...+..+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35667888899999999999999999998643 78889999999999999999999999999999999999999998887
Q ss_pred hHHHHHHh
Q 047017 520 LLDVYKEI 527 (534)
Q Consensus 520 ~~~~~~~~ 527 (534)
..+.+.+.
T Consensus 142 ~~~~~~~~ 149 (170)
T d1p5qa1 142 RIRRQLAR 149 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=6.3e-08 Score=75.12 Aligned_cols=93 Identities=10% Similarity=0.146 Sum_probs=57.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 047017 78 LIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMI 157 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 157 (534)
.+..+.+.|++++|+..|+++.+.+|.+...|..+..++...|++++|.+.|+++++.. +.+..+|..++.++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 34555666666666666666666666666666666666666666666666666666552 22445666666666666666
Q ss_pred HHHHHHHHHHHhCC
Q 047017 158 ESAFKVFDQLLRDN 171 (534)
Q Consensus 158 ~~a~~~~~~~~~~~ 171 (534)
++|...+++.....
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666666553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=1e-08 Score=83.61 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=76.3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047017 367 PNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIII 446 (534)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 446 (534)
|+...+...+..+...|++++|+..|.++++.. +.+...|..++.+|.+.|++++|...|+++++.. +-+...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 566677777888888888888888888877753 4467778888888888888888888888887642 22466777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 047017 447 LGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
.+|...|++++|+..|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888887764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2.2e-07 Score=74.36 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=75.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
...+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.+ |.+...|..++.+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 334455566666666555432 3455555556666666666666666666665554 44555566666666666666
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcC--CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRG--CQP-DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 262 (534)
++|++.|++......++.... ....+ ... ...++..+..++.+.|++++|.+.+.........+
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~------~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLID------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCccCchHH------HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 666655555410000000000 00000 011 12445667778888999999999998888764443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.82 E-value=1.9e-08 Score=72.48 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+......+.+.|++++|+..|++++... |.+..+|..++.++.+.|++++|+..|+.+.+.+|.+..++..++.+|...
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 4556777888999999999999988875 567888999999999999999999999999998888999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 047017 120 NQIELANKVLDRLR 133 (534)
Q Consensus 120 g~~~~a~~~~~~~~ 133 (534)
|++++|.+.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999888754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=4.2e-08 Score=79.77 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=56.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+......+++.|++++|+..|++++... |.++.+|..++.+|.+.|++++|+..|+.+.+.+|.+..+|..++.+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444555555666666666666666555544 44555555566666666666666666666655555555556666666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 047017 116 FCKANQIELANKVLDRLRS 134 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~ 134 (534)
|...|++++|...|+++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666665555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=8.2e-08 Score=83.00 Aligned_cols=192 Identities=10% Similarity=-0.036 Sum_probs=132.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDV----GCP-PNVSSYNTMFSALWSSGDKIRALGMISEMLSK----GI-EPDEITYNS 409 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 409 (534)
.+..|...+++++|...|.++.+. +-+ .-..+|..++.+|.+.|++++|...+++..+. +. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 466788999999999999988653 111 12357888999999999999999999987643 11 111345666
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHH
Q 047017 410 LISCLCR-DGMVDEAVGLLVDMEST----RFRP-TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN------ETTY 477 (534)
Q Consensus 410 l~~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 477 (534)
+...|.. .|++++|.+.+++..+. +.++ ...++..++..+...|++++|+..++++........ ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6666754 69999999999887542 1111 134678889999999999999999999987532221 1234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchH-----HHHHHHhhcch--HHHHHHhhhhh
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAISRD-----TFKRLNRTFPL--LDVYKEISHLA 531 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~~~~~~~~~~~ 531 (534)
...+.++...|+++.|...++++.+..|..+. ....++.++.. .+.+++++..+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y 263 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45566777899999999999999998875443 23444444433 34466666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.71 E-value=3.8e-07 Score=69.79 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.+|..++.+|.+.|++++|++.++++++.++ .+..+|..++.++...|++++|+..|+++++.+|.++.+...+..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4667788999999999999999999999863 478999999999999999999999999999999999999998888776
Q ss_pred hHHHH
Q 047017 520 LLDVY 524 (534)
Q Consensus 520 ~~~~~ 524 (534)
..++.
T Consensus 147 kl~~~ 151 (153)
T d2fbna1 147 KLKEA 151 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.64 E-value=3.3e-07 Score=71.73 Aligned_cols=91 Identities=9% Similarity=-0.072 Sum_probs=80.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
....|..+..++.+.|++++|+..+.++++..+ .+..+|..++.++...|++++|+..|+++++..|.++.+...+..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345677788899999999999999999999764 4788999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhh
Q 047017 518 FPLLDVYKEISH 529 (534)
Q Consensus 518 ~~~~~~~~~~~~ 529 (534)
+.......+..+
T Consensus 155 ~~~l~~~~~~~k 166 (169)
T d1ihga1 155 KQKIKAQKDKEK 166 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888777653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.62 E-value=0.00012 Score=62.98 Aligned_cols=219 Identities=9% Similarity=0.076 Sum_probs=126.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+......+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. .+..+|..+...
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~ 78 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA 78 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHH
Confidence 44445567788889999999999997543 3677888889999999998887754 367899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+.+......+ .+...+...+......++..|-..|.+++...+++...... +.+...++.++.+|++.+ .++.
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl 151 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKM 151 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHH
Confidence 9888766553 22233334466667788999999999999999999887553 667778889999888764 4444
Q ss_pred HHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047017 196 MKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC 275 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (534)
.+.+... ...=+...+..+.+ + ...|..++..|.+.|+++.|..++ ... .++..-...++..+.
T Consensus 152 ~e~l~~~--s~~y~~~k~~~~c~---~------~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~ 215 (336)
T d1b89a_ 152 REHLELF--WSRVNIPKVLRAAE---Q------AHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIIT 215 (336)
T ss_dssp HHHHHHH--STTSCHHHHHHHHH---T------TTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHH
T ss_pred HHHHHhc--cccCCHHHHHHHHH---H------cCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHH
Confidence 4444432 01112233332221 1 112444555555666666554443 222 233333444444555
Q ss_pred hCCChhHHHHHHHHHH
Q 047017 276 RDGKTEDAVDVLRAAK 291 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~~ 291 (534)
+..+.+...+++....
T Consensus 216 k~~N~e~~~~~i~~yL 231 (336)
T d1b89a_ 216 KVANVELYYRAIQFYL 231 (336)
T ss_dssp HCSSTHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHH
Confidence 5555554444444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.8e-07 Score=66.97 Aligned_cols=95 Identities=11% Similarity=0.012 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCC-hhhHHHHHHHHH
Q 047017 77 KLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI---ELANKVLDRLRSRGFSPD-VVTYNIMIGSLC 152 (534)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 152 (534)
.+++.+...+++++|.+.|+.....+|.++.++..++.++.+.++. ++|+.+|+++...+..|+ ..+|..+..+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666666666666554433 346666666655421121 224555666666
Q ss_pred cCCCHHHHHHHHHHHHhCC
Q 047017 153 SRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~~~ 171 (534)
+.|++++|.+.|+++++..
T Consensus 84 ~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHhC
Confidence 6666666666666666653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.59 E-value=1.3e-06 Score=67.99 Aligned_cols=86 Identities=9% Similarity=-0.022 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.+|..+..+|...|++++|+..++++++.++ .+...|..++.++...|++++|+..|+++++.+|.++.+...+..+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3466678889999999999999999999764 478889999999999999999999999999999999999999998887
Q ss_pred hHHHHHH
Q 047017 520 LLDVYKE 526 (534)
Q Consensus 520 ~~~~~~~ 526 (534)
..+.+.+
T Consensus 144 ~~~~~~e 150 (168)
T d1kt1a1 144 KAKEHNE 150 (168)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
Confidence 7776654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=6.8e-07 Score=65.93 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=45.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh-------hHHHHHH
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF-------AYNALIS 114 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~ 114 (534)
.+...+...|+|++|+..|+++++.+ |.+..++..++.++...|++++|+..++.+...+|.+.. +|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555543 344555555555555555555555555555544422222 2333333
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047017 115 GFCKANQIELANKVLDRLR 133 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~ 133 (534)
.+...+++++|++.|++..
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444444555555444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.1e-06 Score=66.91 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPD--------------VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD 105 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 105 (534)
+......+.+.|++++|+..|++++....... ..+|..++.+|.+.|++++|+..++.++..+|.+
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~ 95 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 95 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence 34555678899999999999999876421110 1334556666667777777777777777766667
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 106 VFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 106 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+.++..++.++...|++++|...|+.+.+.
T Consensus 96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 96 EKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 777777777777777777777777776665
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2e-06 Score=63.36 Aligned_cols=104 Identities=8% Similarity=0.117 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-----hhhHHHH
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGF-SPD-----VVTYNIM 147 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l 147 (534)
.+..++..+...|++++|+..|..++..+|.+..++..+..+|.+.|++++|++.++++++... .+. ..+|..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999876510 011 2356667
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhH
Q 047017 148 IGSLCSRGMIESAFKVFDQLLRDNCKPTVITY 179 (534)
Q Consensus 148 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 179 (534)
...+...+++++|++.|++.+.. .++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 77888889999999999988765 3444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.7e-07 Score=87.60 Aligned_cols=112 Identities=8% Similarity=-0.132 Sum_probs=38.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 368 NVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIIL 447 (534)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 447 (534)
+...+..+...+.+.++.+.|...+...... . ....+..++..+...|++++|...|++..+.. +.+...|+.++.
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHH--H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 3334444444444455555554444433321 0 12334444444445555555555555544431 112344445555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047017 448 GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGI 484 (534)
Q Consensus 448 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 484 (534)
.+...|+..+|+..|.+.+... +|-..++..|...+
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 5555555555555555554432 23344444444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.38 E-value=6.9e-06 Score=62.54 Aligned_cols=96 Identities=15% Similarity=0.057 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----C-----------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKP----D-----------VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP 104 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 104 (534)
+..-...+++.|++.+|+..|++++..-... + ..++..++.++.+.|++++|+..++.+...+|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 4556678889999999999999988642111 1 112333444444455555555555555444444
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 105 DVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+..+|..++.++...|++++|...|++..+.
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555555555555555555555544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.36 E-value=1.1e-06 Score=66.30 Aligned_cols=112 Identities=10% Similarity=-0.083 Sum_probs=77.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----------TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
+.+.+++|...++...+.. +.+..++..+..++.. .+.+++|+..++++++.++. +..+|..++.+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence 3344555555555555442 2234445455444442 23456778888888876533 6677777777776
Q ss_pred ccC-----------CHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhh
Q 047017 486 YGG-----------WRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529 (534)
Q Consensus 486 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 529 (534)
..| ++++|.+.|+++++.+|.++..+..|+.+....+.+.++.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k 141 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK 141 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 46899999999999999999999999999998888888754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.34 E-value=1.5e-06 Score=65.46 Aligned_cols=116 Identities=12% Similarity=0.032 Sum_probs=84.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----------CCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQE----------RKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
+-+.+.|++|+..|+.+++.. |.+..++..++.++... +.+++|+..|+.+.+.+|.+..+|..+..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 456677999999999999886 77888999988888744 4457899999999998899999999998888
Q ss_pred HhcCC-----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 117 CKANQ-----------IELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 117 ~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
...|+ +++|.+.|++..+. .|+...+...+..+ .+|.+++.++.+.|
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 77653 46677777777665 55555544433332 45556666655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.32 E-value=3.9e-06 Score=65.37 Aligned_cols=128 Identities=5% Similarity=-0.110 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+......+...|++.+|+..|+++++.. ......... .......+.....+..+..++.+.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~-------~~~~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAED-------ADGAKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCH-------HHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhh-------HHHHHhChhhHHHHHHHHHHHHhh
Confidence 4556667888999999999998876420 000000000 000111133444555566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATML 188 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (534)
|++++|+..+.++++.. +.+...|..+..++...|++++|+..|+++++.. |.+......+..+..+
T Consensus 91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQK 157 (169)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 66666666666666552 2345566666666666666666666666666654 4455555555544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.31 E-value=6.1e-06 Score=64.05 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCC-----------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVAN---GCKPD-----------VVMCTKLIKKFFQERKSNKAVRVMEILEKYGE 103 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 103 (534)
..+......+++.|++.+|+..|++++.. ....+ ...|..+..++.+.|++++|+..++.+...+|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 34566778899999999999999987752 11111 12344456666777777777777777777777
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 104 PDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 104 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
.+..+|..++.++...|++++|...|+++.+.
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=6.4e-07 Score=83.60 Aligned_cols=228 Identities=8% Similarity=-0.059 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRS 134 (534)
Q Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 134 (534)
+|.+.|+++.+.. +....++..++.++...|++++| |+++...++......+.....+ ...+..+.+.++...+
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence 6888888887753 34466777788888888888766 6666655432222222111111 1124456666776665
Q ss_pred CCCCCChhhHHHHH--HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHH
Q 047017 135 RGFSPDVVTYNIMI--GSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 135 ~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 212 (534)
....++..-..... ......+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+...
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------- 146 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSS---------- 146 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHH----------
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHH----------
Confidence 43233322222111 12223455566655555544433 445566777777787888887777665543
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047017 213 AFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (534)
... . ...++..++..+...|++++|...|++..+.. +-+...|+.++..+...|+..+|...|.+...
T Consensus 147 --------l~~--~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 147 --------CSY--I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp --------HHH--H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred --------hCC--C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 0 12456677888888899999999998888874 23567888888888889999999998888887
Q ss_pred CCCCCCHhcHHHHHHHHHhc
Q 047017 293 KGLTPDAYSYDPLISAYCKD 312 (534)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~ 312 (534)
.. +|-+.++..|...+.+.
T Consensus 215 ~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 215 VK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp SS-BCCHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHh
Confidence 64 45667777777766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.21 E-value=3e-05 Score=60.35 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=74.6
Q ss_pred cChhhHHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 35 VKETQFMK---LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 35 ~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
+|-..|.. ....+...|++++|.+.|.+++..- +-+... ......-+...-..+. +....++..
T Consensus 6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l~---------~~~~~~w~~~~r~~l~---~~~~~a~~~ 72 (179)
T d2ff4a2 6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW-RGPVLD---------DLRDFQFVEPFATALV---EDKVLAHTA 72 (179)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTTG---------GGTTSTTHHHHHHHHH---HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccccc---------cCcchHHHHHHHHHHH---HHHHHHHHH
Confidence 34444444 4467889999999999999998752 111000 0000000111111111 112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHhh
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLR-----DNCKPTVIT 178 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 178 (534)
++.++...|++++|+..++++.... +-+...|..++.+|...|+..+|++.|+++.+ .|+.|...+
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 6777777777777777777776652 33566677777777777777777777776533 366666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=5.2e-06 Score=57.10 Aligned_cols=81 Identities=7% Similarity=-0.116 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 439 VISYNIIILGFCKTRRINESIEVLAAMFEKG-----CKPN-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 439 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
...+-.+...+.+.|++++|+..|+++++.. ..++ ..++..++.++.+.|++++|+..++++++.+|.++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3344467788888999999999988887631 1122 567888999999999999999999999999999999988
Q ss_pred HHHhhcc
Q 047017 513 RLNRTFP 519 (534)
Q Consensus 513 ~l~~~~~ 519 (534)
.++.+..
T Consensus 85 Nl~~~~~ 91 (95)
T d1tjca_ 85 NLKYFEY 91 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8865543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=0.0015 Score=55.92 Aligned_cols=136 Identities=10% Similarity=0.057 Sum_probs=82.0
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG 149 (534)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 149 (534)
++..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 4555556677888888999999998886553 6778888888899998888877653 6778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCH
Q 047017 150 SLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV 229 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 229 (534)
.+.......-+ .+...+....+.....++..|-..|.+++...+++.. ... -..+.
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~------------------~~~-~~~~~ 133 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA------------------LGL-ERAHM 133 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------TTS-TTCCH
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHH------------------HcC-Cccch
Confidence 88877665443 2222233445555667777777778777777777654 211 23466
Q ss_pred hhHHHHHHHHHhcC
Q 047017 230 ISYNMLLRTLLNMG 243 (534)
Q Consensus 230 ~~~~~l~~~~~~~~ 243 (534)
..++.++..|++.+
T Consensus 134 ~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 134 GMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 67777887777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.17 E-value=1.4e-06 Score=72.95 Aligned_cols=125 Identities=10% Similarity=-0.004 Sum_probs=90.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL 124 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 124 (534)
+..++.|++++|+..+++.++.. |.+...+..++..++..|++++|...|+.+.+..|.+...+..+...+...+..++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45677899999999999999886 77889999999999999999999999999998888777777777666654444443
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 125 ANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
+..-.......+-+++...+...+..+...|+.++|.+.++++.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3222111111111222333444556677889999999999888765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.98 E-value=0.00016 Score=56.14 Aligned_cols=136 Identities=10% Similarity=-0.006 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
....+......|++++|...|.......+.+.... .....-+...-..+... ....+..++..+...
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~---------~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD---------LRDFQFVEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG---------GTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc---------CcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 34456678899999999999999988653221110 00001111111122211 345677889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcc-----cccCChHHHHHHHHHHHHcC
Q 047017 155 GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGM-----CKKGMVGQAFQFVRSLESRG 224 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~ 224 (534)
|++++|+..+++++... |.+...|..++.++...|+.++|++.|+++.. ....-..+...++..+....
T Consensus 81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~~~ 154 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQ 154 (179)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhCC
Confidence 99999999999999886 78899999999999999999999999998711 11122244556666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=3.8e-05 Score=52.60 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=61.2
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhh
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANG------CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFA 108 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (534)
++...+..+...+.+.|++++|+..|+++++.. ......++..++.++.+.|++++|+..++++.+.+|.++.+
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a 82 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence 456677788888999999999999998887531 11124567888888888999999999999988888888877
Q ss_pred HHHHH
Q 047017 109 YNALI 113 (534)
Q Consensus 109 ~~~l~ 113 (534)
++.+.
T Consensus 83 ~~Nl~ 87 (95)
T d1tjca_ 83 NGNLK 87 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.89 E-value=8.8e-06 Score=67.96 Aligned_cols=120 Identities=10% Similarity=0.035 Sum_probs=85.1
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHH
Q 047017 81 KFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIES 159 (534)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 159 (534)
-..+.|++++|+..++...+..|.+...+..++..++..|++++|.+.|+...+. .|+ ...+..+...+...+..++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 3467899999999999999999999999999999999999999999999999987 554 4444444444443333333
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 160 AFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+..-.......+.+++...+...+..+...|+.++|.+.+.++
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2222111111121333344455566778889999999988876
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.73 E-value=9.7e-05 Score=56.18 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=66.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCC----------hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-
Q 047017 411 ISCLCRDGMVDEAVGLLVDMESTRF-RPT----------VISYNIIILGFCKTRRINESIEVLAAMFEK-----GCKPN- 473 (534)
Q Consensus 411 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~- 473 (534)
+..+...|++++|+..|++.++... .|+ ...|+.+..+|...|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 4455567788888888877764211 111 346777888888889999888888887752 11222
Q ss_pred ----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 474 ----ETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 474 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
...+..++.+|...|++++|...|++++++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 22466778899999999999999999888654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.64 E-value=0.00011 Score=55.77 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=29.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCC-CC----------HhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCK-PD----------VVMCTKLIKKFFQERKSNKAVRVMEILE 99 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 99 (534)
...++..|++++|+..|+++++.... |+ ...|+.++.++...|++++|...++...
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 44555667777777777776653211 11 2334445555555555555555555444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.028 Score=50.62 Aligned_cols=136 Identities=8% Similarity=-0.012 Sum_probs=63.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHhHHHHHHHHHHHcCCCChh---hHHHHHHHH
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ--ERKSNKAVRVMEILEKYGEPDVF---AYNALISGF 116 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~ 116 (534)
..+...++.|++.++.++...+.. .| ...|...-..-.. .....+.... .+..|..+. .-...+..+
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~d---yp-L~pYl~~~~l~~~~~~~~~~~i~~F----l~~~p~~P~~~~lr~~~l~~L 82 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKD---YP-LYPYLEYRQITDDLMNQPAVTVTNF----VRANPTLPPARTLQSRFVNEL 82 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTT---ST-THHHHHHHHHHHTGGGCCHHHHHHH----HHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcC---CC-CHHHHHHHHHHhccccCCHHHHHHH----HHHCCCChhHHHHHHHHHHHH
Confidence 445556777777777777666521 12 2223322222111 2233332222 222222222 223334555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
.+.++++.....+. ..+.+...-..++.+....|+.++|...+..+-..| ...+.....+...+...|.
T Consensus 83 ~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~ 151 (450)
T d1qsaa1 83 ARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (450)
T ss_dssp HHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCC
Confidence 66666655443321 113344444455666666777777776666665554 2333334444444444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.20 E-value=0.0036 Score=43.73 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=63.1
Q ss_pred CCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 435 FRPTVISYNIIILGFCKTR---RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 435 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
..++..+--.++++++++. +.++++.++++..+.++.-....+..+.-+|.+.|++++|+++++++++..|.+..+.
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 3456667677788888765 4578999999998764322235667888899999999999999999999999999776
Q ss_pred HHHHh
Q 047017 512 KRLNR 516 (534)
Q Consensus 512 ~~l~~ 516 (534)
.....
T Consensus 111 ~L~~~ 115 (124)
T d2pqrb1 111 ALKSM 115 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.083 Score=47.44 Aligned_cols=392 Identities=11% Similarity=0.019 Sum_probs=182.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC--KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM 156 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 156 (534)
+....+.|+...+.++...+.. .|.- .|...-..-. ......+...++++-... +.........+..+.+.++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~d-ypL~--pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKD-YPLY--PYLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTT-STTH--HHHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhhhcC-CCCH--HHHHHHHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhccC
Confidence 3345566777777776666632 1322 2222222222 223444444433331110 0011122233455666677
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 047017 157 IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLL 236 (534)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (534)
++.....+. ..+.+...-...+.+....|+.+.|...+..+-.......+.+-.++..+...+. .+...+-.-+
T Consensus 88 w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~-lt~~~~~~R~ 161 (450)
T d1qsaa1 88 WRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK-QDPLAYLERI 161 (450)
T ss_dssp HHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC-SCHHHHHHHH
T ss_pred HHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 665443331 1244455445566666777777777777766644444445555555665555433 3444444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh--cCC
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK--DGR 314 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 314 (534)
......|++..|..+...+-.. ........+.... +...+..... .. ..+......+..++.+ ..+
T Consensus 162 ~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~---~p~~~~~~~~---~~--~~~~~~~~~~~~~l~rla~~d 229 (450)
T d1qsaa1 162 RLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLAN---NPNTVLTFAR---TT--GATDFTRQMAAVAFASVARQD 229 (450)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHH---CGGGHHHHHH---HS--CCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHh---ChHhHHHHHh---cC--CCChhhhHHHHHHHHHHhccC
Confidence 5556667777666665432110 1111222222221 1222221111 11 1122222222222211 234
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTI----LAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALG 390 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 390 (534)
.+.+...+....... ..+...+..+ .......+..+.+...+......+ .+.......+......+++..+..
T Consensus 230 ~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~ 306 (450)
T d1qsaa1 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (450)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHH
Confidence 555555555544332 1111111111 111122334445555554444332 233333333334444555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------CCCCC---------C-hhh-----HH
Q 047017 391 MISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES------------TRFRP---------T-VIS-----YN 443 (534)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~---------~-~~~-----~~ 443 (534)
.+..|... .........-+..++...|+.++|...|..+.. .|.++ + ... -.
T Consensus 307 ~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 385 (450)
T d1qsaa1 307 WLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM 385 (450)
T ss_dssp HHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH
T ss_pred HHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHH
Confidence 55554322 111233334455555555666665555554421 11110 0 011 11
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
.-+..+...|....|...+..+... .+......++....+.|.++.|+....+.
T Consensus 386 ~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 386 ARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 2356677899999999999888753 24556677888888999999999877665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.10 E-value=0.012 Score=42.61 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q 047017 350 ADQALEIFEKLSD 362 (534)
Q Consensus 350 ~~~A~~~~~~~~~ 362 (534)
.++|.++|++..+
T Consensus 75 ~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 75 LRKAAQYYSKACG 87 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhc
Confidence 3444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.05 E-value=0.018 Score=41.64 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHH
Q 047017 244 KWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAI 319 (534)
Q Consensus 244 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 319 (534)
|+++|+++|++..+.| +......+. .....+.++|..++++..+.| ++.....+...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4556666666665554 222222222 223456677777777776665 44555555555554 34677778
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCC
Q 047017 320 EFLDYMISDGCLPDIVNYNTILAAFCK----NGNADQALEIFEKLSDVG 364 (534)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 364 (534)
++|++..+.+ ++.....+...|.. ..+.++|..+|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8887777765 44455556666554 346777777777777665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.76 E-value=0.16 Score=34.83 Aligned_cols=67 Identities=25% Similarity=0.251 Sum_probs=43.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL 295 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (534)
+...++..+......|+-+.-.++++.+.+.+ +|++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33445555666667777777777777766543 55666677777777777777777777777766654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.30 E-value=0.25 Score=33.92 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 442 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
+...++....+|+-+.-.+++..+.+.+ +|++.....++.+|.+.|...++-+++.++.+.|.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3444555566666666666666655533 55666666666666666666666666666666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.98 E-value=0.087 Score=36.56 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=49.2
Q ss_pred CCCHhhHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047017 69 KPDVVMCTKLIKKFFQERK---SNKAVRVMEILEKYGEPD-VFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV 141 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 141 (534)
.+...+....+-+++++.+ ..+++.+|+.+.+.+|.+ ...+..+..+|.+.|++++|.+.++.+++. .|+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n 106 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 106 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCc
Confidence 3455566666666665544 457788888887766544 356777788888888888888888888876 5543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.49 E-value=0.81 Score=29.61 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 457 ESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
+..+-++.+...++.|++.+..+.+++|.+.+++.-|.++++.+..+-
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~ 71 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 71 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 344445555555556666666666666666666666666666555543
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.55 E-value=3.9 Score=29.01 Aligned_cols=141 Identities=12% Similarity=0.017 Sum_probs=86.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 50 AGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVL 129 (534)
Q Consensus 50 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 129 (534)
.++.+-|+++ +.+.|.+--...|..-...+...|++++|-++.....+.--.++.+.+.+-..-..-|+..-...+|
T Consensus 12 l~n~~la~~l---A~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~giLRt~~Ti~rFk~~~~~pGq~spLL~YF 88 (157)
T d1bpoa1 12 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 88 (157)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHH---HHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccccCHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 4556555544 4556666677778888888888888888888776655544556666666555444567777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 130 DRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+.+.| ..|..--..+++.-...|+.+-....+.+ .....+. ....++. .-+..-|..+|.+.
T Consensus 89 ~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~Wl~e---~KL~~SE-eLGDlv~----~~d~~lAl~IY~ka 152 (157)
T d1bpoa1 89 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSE-ELGDLVK----SVDPTLALSVYLRA 152 (157)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCH-HHHHHHH----HHCSHHHHHHHHHH
T ss_pred HHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHHHHc---CCccCcH-HHHHHHH----HcCHHHHHHHHHHc
Confidence 7777765 34555445666766777776665555433 2223332 2233332 23555666666554
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.24 E-value=7.2 Score=27.63 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=55.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 103 EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 103 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
|.....|..-...+...|++++|.++-....+ |+-.+..|.+.+-.+-...|...-.+.+|..+.+.| ..|..--..+
T Consensus 28 pGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~-~LN~~ESlEl 105 (157)
T d1bpoa1 28 AGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLEL 105 (157)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCchHHhHHH
Confidence 44445566666666667777777666544332 333355555444433334555556666666666665 4455444555
Q ss_pred HHHHHhcCCHhHHHHHHHHh
Q 047017 183 IQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~ 202 (534)
++.-...|+.+-..+++.+=
T Consensus 106 ~r~vL~q~r~~lve~Wl~e~ 125 (157)
T d1bpoa1 106 CRPVLQQGRKQLLEKWLKED 125 (157)
T ss_dssp HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHcC
Confidence 66666666666666666554
|