Citrus Sinensis ID: 047067

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
Protein Sequence
KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHcccccHHHHHHHHHHHHcccccccEEHHHHHHHHHHHccHHHHHHHHHHHHHHcccccEEEHHHHHHHHHccccHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccEEEEEcccHEEEcccccccccccc
Coil and Loop (DISEMBL)
KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARklfdempvkdMVTWTALISgysqndqpenAIILFSQMLrlglkpnqftLSSVLKasgagatddkfgRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLregfepthfsYSSVFTALAstgsleqgkWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLrngiapnqVTFLCVLTacshaglldeGQGYFALMKkhgvepeeahYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERifeldphdsgphiLLANIYASAGRLNDAARARKMMKesgvkkepacswvetkNAVHMFVanddahpqraMIHKKWREISEKIKqigyvpdsshvlsyADQQEREAKLQVHSEKLALAFAListppgstihikknirvcgDCHSAFKFASKVVEReiivrdtnrfhhfrdgfcscgdyw
Flexible Loop (DISEMBL)
kcthlkklkearIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASgagatddkfGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMkesgvkkepacswvETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIgyvpdsshVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFaskvvereiivrdtnrfhhfrdgfcscgdyw
Low Complexity Region (SEG)
KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVdllgraglldralKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW
Disordered region (IsUnstruct)
*******LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHA*********RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL*******************ACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYA********LQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDY*
Disordered Region (DISOPRED)
KCTH*KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW
Disordered Region (DISEMBL)
KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAA****************CSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW
Disordered Region (DISPRO)
KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	566	2.2.26 [Sep-21-2011]
Q9LIQ7	633	Pentatricopeptide repeat-	yes	no	0.998	0.892	0.699	0.0
Q9LIC3	628	Putative pentatricopeptid	no	no	0.987	0.890	0.429	1e-142
Q9ZUW3	868	Pentatricopeptide repeat-	no	no	0.989	0.645	0.425	1e-139
Q9LW63	715	Putative pentatricopeptid	no	no	0.996	0.788	0.410	1e-138
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.989	0.692	0.429	1e-138
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.996	0.812	0.416	1e-136
Q9SI53	630	Pentatricopeptide repeat-	no	no	0.987	0.887	0.406	1e-135
Q9STF3	657	Pentatricopeptide repeat-	no	no	0.998	0.859	0.413	1e-133
Q9SMZ2	990	Pentatricopeptide repeat-	no	no	0.984	0.562	0.410	1e-133
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.996	0.530	0.401	1e-132

>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/566 (69%), Positives = 465/566 (82%), Gaps = 1/566 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
           KCT  K L + RIVHAHIL S F++DI M NT+LN YAKCG L+EARK+F++MP +D VT
Sbjct: 69  KCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVT 128

Query: 61  WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
           WT LISGYSQ+D+P +A++ F+QMLR G  PN+FTLSSV+KA+ A       G Q+H FC
Sbjct: 129 WTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA-ERRGCCGHQLHGFC 187

Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
           +K G+D NV+VGS+LLD+Y R+  MDDA  +F ALES+N+VSWNALIAGHAR+S  EKAL
Sbjct: 188 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKAL 247

Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
             F  MLR+GF P+HFSY+S+F A +STG LEQGKWVHA++IKSG +LVAF GNTL+DMY
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307

Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
           AKSGSI DA K+F+RL KRDVVSWNS+LT  AQHG GK  V WFE+M R GI PN+++FL
Sbjct: 308 AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFL 367

Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
            VLTACSH+GLLDEG  Y+ LMKK G+ PE  HYVT VDLLGRAG L+RAL+FI EMPIE
Sbjct: 368 SVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIE 427

Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
           PTAA+W ALL ACRMHKN ELGAYAAE +FELDP D GPH++L NIYAS GR NDAAR R
Sbjct: 428 PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVR 487

Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
           K MKESGVKKEPACSWVE +NA+HMFVAND+ HPQR  I +KW E+  KIK++GYVPD+S
Sbjct: 488 KKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTS 547

Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
           HV+ + DQQERE  LQ HSEK+ALAFAL++TPPGSTIHIKKNIRVCGDCH+A K ASKVV
Sbjct: 548 HVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVV 607

Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
            REIIVRDTNRFHHF+DG CSC DYW
Sbjct: 608 GREIIVRDTNRFHHFKDGNCSCKDYW 633

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1

 Score =  504 bits (1297), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/573 (42%), Positives = 367/573 (64%), Gaps = 14/573 (2%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
           C   + L++ + VHAH++ + +     ++  +L  Y KC CL++ARK+ DEMP K++V+W
Sbjct: 62  CLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 121

Query: 62  TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVL----KASGAGATDDKFGRQVH 117
           TA+IS YSQ      A+ +F++M+R   KPN+FT ++VL    +ASG G      G+Q+H
Sbjct: 122 TAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLG-----LGKQIH 176

Query: 118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGE 177
              +K+ YD +++VGSSLLDMYA+  Q+ +A  +F  L  ++ VS  A+IAG+A+    E
Sbjct: 177 GLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDE 236

Query: 178 KALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237
           +AL  F  +  EG  P + +Y+S+ TAL+    L+ GK  H HV++      A + N+L+
Sbjct: 237 EALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLI 296

Query: 238 DMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG--IAPN 295
           DMY+K G++  A ++F+ + +R  +SWN+ML G ++HGLG+  +  F +++R+   + P+
Sbjct: 297 DMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF-RLMRDEKRVKPD 355

Query: 296 QVTFLCVLTACSHAGLLDEGQGYFALM--KKHGVEPEEAHYVTFVDLLGRAGLLDRALKF 353
            VT L VL+ CSH  + D G   F  M   ++G +P   HY   VD+LGRAG +D A +F
Sbjct: 356 AVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEF 415

Query: 354 IREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL 413
           I+ MP +PTA V G+LLGACR+H +V++G     R+ E++P ++G +++L+N+YASAGR 
Sbjct: 416 IKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRW 475

Query: 414 NDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQI 473
            D    R MM +  V KEP  SW++ +  +H F AND  HP+R  +  K +EIS K+KQ 
Sbjct: 476 ADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQA 535

Query: 474 GYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAF 533
           GYVPD S VL   D++++E  L  HSEKLAL F LI+T  G  I + KN+R+C DCH+  
Sbjct: 536 GYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFA 595

Query: 534 KFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
           K  SKV ERE+ +RD NRFH   DG CSCGDYW
Sbjct: 596 KIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/569 (42%), Positives = 367/569 (64%), Gaps = 9/569 (1%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP-VKDMVT 60
           C +LK+L+    +H  ++   F  D  ++  ++ AY+KC  + +A +LF E+  V ++V+
Sbjct: 305 CANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVS 364

Query: 61  WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
           WTA+ISG+ QND  E A+ LFS+M R G++PN+FT S +L A    +       +VHA  
Sbjct: 365 WTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPS-----EVHAQV 419

Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
           +K  Y+ +  VG++LLD Y +  ++++A  +F+ ++ K+ V+W+A++AG+A+  E E A+
Sbjct: 420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAI 479

Query: 181 RTFSEMLREGFEPTHFSYSSVFTALAST-GSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
           + F E+ + G +P  F++SS+    A+T  S+ QGK  H   IKS       V + L+ M
Sbjct: 480 KMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 539

Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
           YAK G+IE AE+VF R  ++D+VSWNSM++G AQHG     +  F++M +  +  + VTF
Sbjct: 540 YAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTF 599

Query: 300 LCVLTACSHAGLLDEGQGYFALMKKH-GVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP 358
           + V  AC+HAGL++EG+ YF +M +   + P + H    VDL  RAG L++A+K I  MP
Sbjct: 600 IGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP 659

Query: 359 IEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR 418
               + +W  +L ACR+HK  ELG  AAE+I  + P DS  ++LL+N+YA +G   + A+
Sbjct: 660 NPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAK 719

Query: 419 ARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPD 478
            RK+M E  VKKEP  SW+E KN  + F+A D +HP +  I+ K  ++S ++K +GY PD
Sbjct: 720 VRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPD 779

Query: 479 SSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASK 538
           +S+VL   D + +EA L  HSE+LA+AF LI+TP GS + I KN+RVCGDCH   K  +K
Sbjct: 780 TSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAK 839

Query: 539 VVEREIIVRDTNRFHHF-RDGFCSCGDYW 566
           + EREI+VRD+NRFHHF  DG CSCGD+W
Sbjct: 840 IEEREIVVRDSNRFHHFSSDGVCSCGDFW 868

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1

 Score =  493 bits (1270), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/602 (41%), Positives = 366/602 (60%), Gaps = 38/602 (6%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKC--------------------- 40
           CT +  L+    VH  I+      D+   N ++N YAK                      
Sbjct: 115 CTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTS 174

Query: 41  ----------GCL-----DEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQML 85
                      C+     D  R++F+ MP KD+V++  +I+GY+Q+   E+A+ +  +M 
Sbjct: 175 NSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMG 234

Query: 86  RLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQM 145
              LKP+ FTLSSVL    +   D   G+++H + ++ G D +VY+GSSL+DMYA+  ++
Sbjct: 235 TTDLKPDSFTLSSVLPIF-SEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARI 293

Query: 146 DDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL 205
           +D+  +F+ L  ++ +SWN+L+AG+ +     +ALR F +M+    +P   ++SSV  A 
Sbjct: 294 EDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPAC 353

Query: 206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWN 265
           A   +L  GK +H +V++ G     F+ + LVDMY+K G+I+ A K+F+R+   D VSW 
Sbjct: 354 AHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWT 413

Query: 266 SMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKK- 324
           +++ G A HG G   V  FE+M R G+ PNQV F+ VLTACSH GL+DE  GYF  M K 
Sbjct: 414 AIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKV 473

Query: 325 HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAY 384
           +G+  E  HY    DLLGRAG L+ A  FI +M +EPT +VW  LL +C +HKN+EL   
Sbjct: 474 YGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEK 533

Query: 385 AAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVH 444
            AE+IF +D  + G ++L+ N+YAS GR  + A+ R  M++ G++K+PACSW+E KN  H
Sbjct: 534 VAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTH 593

Query: 445 MFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLAL 504
            FV+ D +HP    I++  + + E++++ GYV D+S VL   D++ +   L  HSE+LA+
Sbjct: 594 GFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAV 653

Query: 505 AFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCGD 564
           AF +I+T PG+TI + KNIR+C DCH A KF SK+ EREIIVRD +RFHHF  G CSCGD
Sbjct: 654 AFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGD 713

Query: 565 YW 566
           YW
Sbjct: 714 YW 715

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  491 bits (1263), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/563 (42%), Positives = 349/563 (61%), Gaps = 3/563 (0%)

Query: 5   LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTAL 64
           L+ +   + +H + + S F + + +   +++ YAKCG L+ AR+LFD M  +++V+W ++
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query: 65  ISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYG 124
           I  Y QN+ P+ A+++F +ML  G+KP   ++   L A  A   D + GR +H   ++ G
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHAC-ADLGDLERGRFIHKLSVELG 367

Query: 125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFS 184
            D NV V +SL+ MY +  ++D A  +F  L+S+  VSWNA+I G A+      AL  FS
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427

Query: 185 EMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG 244
           +M     +P  F+Y SV TA+A        KW+H  V++S      FV   LVDMYAK G
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487

Query: 245 SIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304
           +I  A  +F+ + +R V +WN+M+ G   HG GKA +  FE+M +  I PN VTFL V++
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVIS 547

Query: 305 ACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTA 363
           ACSH+GL++ G   F +MK+ + +E    HY   VDLLGRAG L+ A  FI +MP++P  
Sbjct: 548 ACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607

Query: 364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423
            V+GA+LGAC++HKNV     AAER+FEL+P D G H+LLANIY +A       + R  M
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 424 KESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVL 483
              G++K P CS VE KN VH F +   AHP    I+    ++   IK+ GYVPD++ VL
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL 727

Query: 484 SYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVERE 543
              +   +E  L  HSEKLA++F L++T  G+TIH++KN+RVC DCH+A K+ S V  RE
Sbjct: 728 G-VENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGRE 786

Query: 544 IIVRDTNRFHHFRDGFCSCGDYW 566
           I+VRD  RFHHF++G CSCGDYW
Sbjct: 787 IVVRDMQRFHHFKNGACSCGDYW 809

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  487 bits (1253), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/567 (41%), Positives = 356/567 (62%), Gaps = 3/567 (0%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPV--KDMV 59
           C+ L  L+  R VHA +    F  D+ +QN ++  YAKC  L  AR +F+ +P+  + +V
Sbjct: 129 CSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188

Query: 60  TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAF 119
           +WTA++S Y+QN +P  A+ +FSQM ++ +KP+   L SVL A      D K GR +HA 
Sbjct: 189 SWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC-LQDLKQGRSIHAS 247

Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
            +K G +    +  SL  MYA+  Q+  A  LF  ++S N + WNA+I+G+A+     +A
Sbjct: 248 VVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREA 307

Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
           +  F EM+ +   P   S +S  +A A  GSLEQ + ++ +V +S  +   F+ + L+DM
Sbjct: 308 IDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDM 367

Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
           +AK GS+E A  VF+R L RDVV W++M+ G   HG  +  +  +  M R G+ PN VTF
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTF 427

Query: 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPI 359
           L +L AC+H+G++ EG  +F  M  H + P++ HY   +DLLGRAG LD+A + I+ MP+
Sbjct: 428 LGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPV 487

Query: 360 EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419
           +P   VWGALL AC+ H++VELG YAA+++F +DP ++G ++ L+N+YA+A   +  A  
Sbjct: 488 QPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEV 547

Query: 420 RKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479
           R  MKE G+ K+  CSWVE +  +  F   D +HP+   I ++   I  ++K+ G+V + 
Sbjct: 548 RVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANK 607

Query: 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
              L   + +E E  L  HSE++A+A+ LISTP G+ + I KN+R C +CH+A K  SK+
Sbjct: 608 DASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKL 667

Query: 540 VEREIIVRDTNRFHHFRDGFCSCGDYW 566
           V+REI+VRDTNRFHHF+DG CSCGDYW
Sbjct: 668 VDREIVVRDTNRFHHFKDGVCSCGDYW 694

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1

 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/566 (40%), Positives = 357/566 (63%), Gaps = 7/566 (1%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
           C   + + E  ++  H+  +  +  + + N ++N Y K   L++A +LFD+MP +++++W
Sbjct: 71  CISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISW 130

Query: 62  TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
           T +IS YS+    + A+ L   MLR  ++PN +T SSVL+ S  G +D    R +H   +
Sbjct: 131 TTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLR-SCNGMSD---VRMLHCGII 186

Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
           K G + +V+V S+L+D++A+  + +DA  +F  + + + + WN++I G A+ S  + AL 
Sbjct: 187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246

Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
            F  M R GF     + +SV  A      LE G   H H++K    L+  + N LVDMY 
Sbjct: 247 LFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLI--LNNALVDMYC 304

Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
           K GS+EDA +VFN++ +RDV++W++M++G AQ+G  +  ++ FE+M  +G  PN +T + 
Sbjct: 305 KCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364

Query: 302 VLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
           VL ACSHAGLL++G  YF  MKK +G++P   HY   +DLLG+AG LD A+K + EM  E
Sbjct: 365 VLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECE 424

Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
           P A  W  LLGACR+ +N+ L  YAA+++  LDP D+G + LL+NIYA++ + +     R
Sbjct: 425 PDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIR 484

Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
             M++ G+KKEP CSW+E    +H F+  D++HPQ   + KK  ++  ++  IGYVP+++
Sbjct: 485 TRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETN 544

Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
            VL   + ++ E  L+ HSEKLALAF L++ P    I I+KN+R+CGDCH   K ASK+ 
Sbjct: 545 FVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLE 604

Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
            R I++RD  R+HHF+DG CSCGDYW
Sbjct: 605 IRSIVIRDPIRYHHFQDGKCSCGDYW 630

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1

 Score =  476 bits (1225), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/571 (41%), Positives = 357/571 (62%), Gaps = 6/571 (1%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
           C H   L +A  VH HIL +    D  +   ++  Y+  G +D ARK+FD+   + +  W
Sbjct: 87  CGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVW 146

Query: 62  TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKF---GRQVHA 118
            AL    +     E  + L+ +M R+G++ ++FT + VLKA  A          G+++HA
Sbjct: 147 NALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHA 206

Query: 119 FCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEK 178
              + GY  +VY+ ++L+DMYARF  +D A ++F  +  +N VSW+A+IA +A+  +  +
Sbjct: 207 HLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFE 266

Query: 179 ALRTFSEMLREGFE--PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236
           ALRTF EM+RE  +  P   +  SV  A AS  +LEQGK +H ++++ G   +  V + L
Sbjct: 267 ALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISAL 326

Query: 237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296
           V MY + G +E  ++VF+R+  RDVVSWNS+++    HG GK  ++ FE+ML NG +P  
Sbjct: 327 VTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTP 386

Query: 297 VTFLCVLTACSHAGLLDEGQGYFALM-KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIR 355
           VTF+ VL ACSH GL++EG+  F  M + HG++P+  HY   VDLLGRA  LD A K ++
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446

Query: 356 EMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND 415
           +M  EP   VWG+LLG+CR+H NVEL   A+ R+F L+P ++G ++LLA+IYA A   ++
Sbjct: 447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDE 506

Query: 416 AARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGY 475
             R +K+++  G++K P   W+E +  ++ FV+ D+ +P    IH    +++E +K+ GY
Sbjct: 507 VKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGY 566

Query: 476 VPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKF 535
           +P +  VL   + +E+E  +  HSEKLALAF LI+T  G  I I KN+R+C DCH   KF
Sbjct: 567 IPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKF 626

Query: 536 ASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
            SK +E+EI+VRD NRFH F++G CSCGDYW
Sbjct: 627 ISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657

Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1

 Score =  474 bits (1220), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/560 (41%), Positives = 356/560 (63%), Gaps = 3/560 (0%)

Query: 8   LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISG 67
           L  ++ VH H +     +D  +   +++AY++  C+ EA  LF+     D+V W A+++G
Sbjct: 433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAG 491

Query: 68  YSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDW 127
           Y+Q+      + LF+ M + G + + FTL++V K  G     ++ G+QVHA+ +K GYD 
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQ-GKQVHAYAIKSGYDL 550

Query: 128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187
           +++V S +LDMY +   M  A F F ++   ++V+W  +I+G     E E+A   FS+M 
Sbjct: 551 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMR 610

Query: 188 REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247
             G  P  F+ +++  A +   +LEQG+ +HA+ +K       FVG +LVDMYAK GSI+
Sbjct: 611 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSID 670

Query: 248 DAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307
           DA  +F R+   ++ +WN+ML G AQHG GK T++ F++M   GI P++VTF+ VL+ACS
Sbjct: 671 DAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACS 730

Query: 308 HAGLLDEGQGYFALMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVW 366
           H+GL+ E   +   M   +G++PE  HY    D LGRAGL+ +A   I  M +E +A+++
Sbjct: 731 HSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMY 790

Query: 367 GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426
             LL ACR+  + E G   A ++ EL+P DS  ++LL+N+YA+A + ++   AR MMK  
Sbjct: 791 RTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGH 850

Query: 427 GVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYA 486
            VKK+P  SW+E KN +H+FV +D ++ Q  +I++K +++   IKQ GYVP++   L   
Sbjct: 851 KVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDV 910

Query: 487 DQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIV 546
           +++E+E  L  HSEKLA+AF L+STPP + I + KN+RVCGDCH+A K+ +KV  REI++
Sbjct: 911 EEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970

Query: 547 RDTNRFHHFRDGFCSCGDYW 566
           RD NRFH F+DG CSCGDYW
Sbjct: 971 RDANRFHRFKDGICSCGDYW 990

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  471 bits (1213), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/566 (40%), Positives = 357/566 (63%), Gaps = 2/566 (0%)

Query: 2    CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
            C  L  L+    +H+ I+ + F+ +  + + +++ YAK G LD A  +      KD+V+W
Sbjct: 500  CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSW 559

Query: 62   TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
            T +I+GY+Q +  + A+  F QML  G++ ++  L++ + A  AG    K G+Q+HA   
Sbjct: 560  TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSAC-AGLQALKEGQQIHAQAC 618

Query: 122  KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
              G+  ++   ++L+ +Y+R  ++++++  F   E+ + ++WNAL++G  +    E+ALR
Sbjct: 619  VSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALR 678

Query: 182  TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
             F  M REG +  +F++ S   A + T +++QGK VHA + K+G      V N L+ MYA
Sbjct: 679  VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYA 738

Query: 242  KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
            K GSI DAEK F  +  ++ VSWN+++   ++HG G   +  F++M+ + + PN VT + 
Sbjct: 739  KCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVG 798

Query: 302  VLTACSHAGLLDEGQGYFALMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
            VL+ACSH GL+D+G  YF  M  ++G+ P+  HYV  VD+L RAGLL RA +FI+EMPI+
Sbjct: 799  VLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIK 858

Query: 361  PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
            P A VW  LL AC +HKN+E+G +AA  + EL+P DS  ++LL+N+YA + + +     R
Sbjct: 859  PDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTR 918

Query: 421  KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
            + MKE GVKKEP  SW+E KN++H F   D  HP    IH+ +++++++  +IGYV D  
Sbjct: 919  QKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCF 978

Query: 481  HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
             +L+    ++++  + +HSEKLA++F L+S P    I++ KN+RVC DCH+  KF SKV 
Sbjct: 979  SLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVS 1038

Query: 541  EREIIVRDTNRFHHFRDGFCSCGDYW 566
             REIIVRD  RFHHF  G CSC DYW
Sbjct: 1039 NREIIVRDAYRFHHFEGGACSCKDYW 1064

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
224089505	590	predicted protein [Populus trichocarpa]	1.0	0.959	0.726	0.0
449443492	678	PREDICTED: pentatricopeptide repeat-cont	0.998	0.833	0.708	0.0
449527343	677	PREDICTED: LOW QUALITY PROTEIN: pentatri	0.996	0.833	0.706	0.0
359496846	1286	PREDICTED: uncharacterized protein LOC10	0.984	0.433	0.713	0.0
75273443	633	RecName: Full=Pentatricopeptide repeat-c	0.998	0.892	0.699	0.0
297835482	624	pentatricopeptide repeat-containing prot	0.998	0.905	0.692	0.0
240255401	665	pentatricopeptide repeat-containing prot	0.984	0.837	0.697	0.0
147766033	724	hypothetical protein VITISV_038740 [Viti	0.954	0.745	0.710	0.0
356515406	647	PREDICTED: pentatricopeptide repeat-cont	0.998	0.873	0.650	0.0
222612904	637	hypothetical protein OsJ_31684 [Oryza sa	0.996	0.885	0.617	0.0

>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa] gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/567 (72%), Positives = 479/567 (84%), Gaps = 1/567 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
           +CTHL KL E +I+HA +L S F++D+ MQNT+LN YAKCG L  ARKLFDEM  +D+VT
Sbjct: 24  RCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVT 83

Query: 61  WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-SGAGATDDKFGRQVHAF 119
           WTALI+GYSQ+D+P++A++L  +MLR+GLKPNQFTL+S+LKA SG G+TD   GRQ+H  
Sbjct: 84  WTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGL 143

Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
           CL+YGYD NVYV  ++LDMYAR   +++A  +F  + SKNEVSWNALIAG+ARK +G+KA
Sbjct: 144 CLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKA 203

Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
              FS MLRE  +PTHF+YSSV  A AS GSLEQGKWVHA +IK G +LVAFVGNTL+DM
Sbjct: 204 FCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDM 263

Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
           YAKSGSIEDA+KVF+RL KRDVVSWNSMLTG +QHGLGK  ++ FE+MLR  IAPN +TF
Sbjct: 264 YAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITF 323

Query: 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPI 359
           LCVLTACSHAGLLDEG+ YF +MKK+ VEP+ +HYVT VDLLGRAG LDRA++FI EMPI
Sbjct: 324 LCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPI 383

Query: 360 EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419
           +PTAAVWGALLGACRMHKN+ELG YAAE IFELD H  G H+LL NIYA AGR NDAA+ 
Sbjct: 384 KPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKV 443

Query: 420 RKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479
           RKMMKESGVKKEPACSWVE +N VH+FVA+DDAHPQR  IH  W +IS+KIK+IGYVPDS
Sbjct: 444 RKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDS 503

Query: 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
           SHVL   DQQEREAKLQ HSEKLALAFAL++TPPGSTI IKKNIR+CGDCHSAFKF SK+
Sbjct: 504 SHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKL 563

Query: 540 VEREIIVRDTNRFHHFRDGFCSCGDYW 566
           VEREIIVRDTNRFHHF DG CSC DYW
Sbjct: 564 VEREIIVRDTNRFHHFCDGACSCEDYW 590

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Cucumis sativus]

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/566 (70%), Positives = 480/566 (84%), Gaps = 1/566 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
           KCT+L+KLK+ R +HAHI  S F++D+ + N ILN YAKCG L+EA+ LFD+MP KDMV+
Sbjct: 114 KCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVS 173

Query: 61  WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
           WT LISGYSQ+ Q   A+ LF +ML LG +PN+FTLSS+LKASG G +D   GRQ+HAF 
Sbjct: 174 WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHH-GRQLHAFS 232

Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
           LKYGYD NV+VGSSLLDMYAR+  M +A  +F +L +KN VSWNALIAGHARK EGE  +
Sbjct: 233 LKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVM 292

Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
           R F +MLR+GFEPTHF+YSSVFTA AS+GSLEQGKWVHAHVIKSGGQ +A++GNTL+DMY
Sbjct: 293 RLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMY 352

Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
           AKSGSI+DA+KVF RL+K+D+VSWNS+++G AQHGLG   ++ FE+ML+  + PN++TFL
Sbjct: 353 AKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFL 412

Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
            VLTACSH+GLLDEGQ YF LMKKH +E + AH+VT VDLLGRAG L+ A KFI EMPI+
Sbjct: 413 SVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIK 472

Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
           PTAAVWGALLG+CRMHKN++LG YAAE+IFELDPHDSGPH+LL+NIYASAGRL+DAA+ R
Sbjct: 473 PTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVR 532

Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
           KMMKESGVKKEPACSWVE +N VH+FVANDD+HP R  I + W +IS KIK+IGYVPD+S
Sbjct: 533 KMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTS 592

Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
           HVL + +QQ+RE KLQ HSEKLALAFA++ TPPG TI IKKNIR+CGDCHSAFKFAS+V+
Sbjct: 593 HVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVL 652

Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
            REIIVRDTNRFHHF  G CSC DYW
Sbjct: 653 GREIIVRDTNRFHHFLHGMCSCRDYW 678

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Cucumis sativus]

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/566 (70%), Positives = 478/566 (84%), Gaps = 2/566 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
           KCT+L+KLK+ R +HAHI  S F++D+ + N ILN YAKCG L+EA+ LFD+MP KDMV+
Sbjct: 114 KCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVS 173

Query: 61  WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
           WT LISGYSQ+ Q   A+ LF +ML LG +PN+FTLSS+LKASG G +D   GRQ+HAF 
Sbjct: 174 WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHH-GRQLHAFS 232

Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
           LKYGYD NV+VGSSLLDMYAR+  M +A  +F +L +KN VSWNALIAGHARK EGE  +
Sbjct: 233 LKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVM 292

Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
           R F +MLR+GFEPTHF+YSSV  A AS+GSLEQGKWVHAHVIKSGGQ +A++GNTL+DMY
Sbjct: 293 RLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMY 351

Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
           AKSGSI+DA+KVF RL+K+D+VSWNS+++G AQHGLG   ++ FE+ML+  + PN++TFL
Sbjct: 352 AKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFL 411

Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
            VLTACSH+GLLDEGQ YF LMKKH +E + AH+VT VDLLGRAG L+ A KFI EMPI+
Sbjct: 412 SVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIK 471

Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
           PTAAVWGALLGACRMHKN++LG YAAE+IFELDPHDSGPH+LL+NIYASAGRL+DAA+ R
Sbjct: 472 PTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVR 531

Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
           KMMKESGVKKEPACSWVE +N VH+FVANDD+HP R  I + W +IS KIK+IGYVPD+S
Sbjct: 532 KMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTS 591

Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
           HVL + +QQ+RE KLQ HSEKLALAFA++ TPPG TI IKKNIR+CGDCHSAFKFAS+V+
Sbjct: 592 HVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVL 651

Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
            REIIVRDTNRFHHF  G CSC DYW
Sbjct: 652 GREIIVRDTNRFHHFLHGMCSCRDYW 677

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/559 (71%), Positives = 472/559 (84%), Gaps = 2/559 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAF-KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMV 59
           +CT L K+++ RIVHAH++ S F  N + +QN I+N YAKCGCLD+AR++FDEMP KDMV
Sbjct: 96  ECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMV 155

Query: 60  TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAF 119
           TWTALI+G+SQN++P +A++LF QMLRLG +PN FTLSS+LKASG+    D  G Q+HAF
Sbjct: 156 TWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDP-GTQLHAF 214

Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
           CLKYGY  +VYVGS+L+DMYAR   MD A   F  + +K+EVSWNALI+GHARK EGE A
Sbjct: 215 CLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHA 274

Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
           L    +M R+ F+PTHF+YSSV +A AS G+LEQGKWVHAH+IKSG +L+AF+GNTL+DM
Sbjct: 275 LHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDM 334

Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
           YAK+GSI+DA++VF+RL+K DVVSWN+MLTGCAQHGLGK T+  FE+MLR GI PN+++F
Sbjct: 335 YAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISF 394

Query: 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPI 359
           LCVLTACSH+GLLDEG  YF LMKK+ VEP+  HYVTFVDLLGR GLLDRA +FIREMPI
Sbjct: 395 LCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPI 454

Query: 360 EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419
           EPTAAVWGALLGACRMHKN+ELG YAAER FELDPHDSGP +LL+NIYASAGR  D A+ 
Sbjct: 455 EPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKV 514

Query: 420 RKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479
           RKMMKESGVKK+PACSWVE +NAVH+FVAND+ HP+   I  KW EIS KIK+IGYVPD+
Sbjct: 515 RKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDT 574

Query: 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
           SHVL + DQQERE KLQ HSEKLALAFAL++TP GS I IKKNIRVCGDCH+A KF SKV
Sbjct: 575 SHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKV 634

Query: 540 VEREIIVRDTNRFHHFRDG 558
           V+REIIVRDTNRFH FRDG
Sbjct: 635 VDREIIVRDTNRFHRFRDG 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g24000, mitochondrial; Flags: Precursor gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/566 (69%), Positives = 465/566 (82%), Gaps = 1/566 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
           KCT  K L + RIVHAHIL S F++DI M NT+LN YAKCG L+EARK+F++MP +D VT
Sbjct: 69  KCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVT 128

Query: 61  WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
           WT LISGYSQ+D+P +A++ F+QMLR G  PN+FTLSSV+KA+ A       G Q+H FC
Sbjct: 129 WTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA-ERRGCCGHQLHGFC 187

Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
           +K G+D NV+VGS+LLD+Y R+  MDDA  +F ALES+N+VSWNALIAGHAR+S  EKAL
Sbjct: 188 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKAL 247

Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
             F  MLR+GF P+HFSY+S+F A +STG LEQGKWVHA++IKSG +LVAF GNTL+DMY
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307

Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
           AKSGSI DA K+F+RL KRDVVSWNS+LT  AQHG GK  V WFE+M R GI PN+++FL
Sbjct: 308 AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFL 367

Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
            VLTACSH+GLLDEG  Y+ LMKK G+ PE  HYVT VDLLGRAG L+RAL+FI EMPIE
Sbjct: 368 SVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIE 427

Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
           PTAA+W ALL ACRMHKN ELGAYAAE +FELDP D GPH++L NIYAS GR NDAAR R
Sbjct: 428 PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVR 487

Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
           K MKESGVKKEPACSWVE +NA+HMFVAND+ HPQR  I +KW E+  KIK++GYVPD+S
Sbjct: 488 KKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTS 547

Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
           HV+ + DQQERE  LQ HSEK+ALAFAL++TPPGSTIHIKKNIRVCGDCH+A K ASKVV
Sbjct: 548 HVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVV 607

Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
            REIIVRDTNRFHHF+DG CSC DYW
Sbjct: 608 GREIIVRDTNRFHHFKDGNCSCKDYW 633

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/566 (69%), Positives = 461/566 (81%), Gaps = 1/566 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
           KCT  K L + RIVH H++ S F++D+ M NT+LN YAKCG L+EARK+FD+MP +D VT
Sbjct: 60  KCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVT 119

Query: 61  WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
           WT LISGYSQ+D+P +A++LF+QMLR G  PN+FTLSSV+KA+ A       G Q+H FC
Sbjct: 120 WTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAA-ERRGCCGHQLHGFC 178

Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
           +K G+D NV+VGS+LLD+Y R+  MDDA  +F ALES+N+VSWNALIAGHAR+   EKAL
Sbjct: 179 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKAL 238

Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
             F  MLREGF P+HFSY+S+F A +STG LEQGKWVHA++IKSG +LVAF GNTL+DMY
Sbjct: 239 ELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 298

Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
           AKSGSI DA K+F+RL KRDVVSWNS+LT  AQHG G   V WFE+M R GI PN+++FL
Sbjct: 299 AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFL 358

Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
            VLTACSH+GLLDEG  Y+ LMKK G+  E  HYVT VDLLGRAG L+RAL+FI EMPIE
Sbjct: 359 SVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIE 418

Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
           PTAA+W ALL ACRMHKN ELGAYAAE +FELDP D GPH++L NIYAS GR NDAAR R
Sbjct: 419 PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVR 478

Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
           K MKESGVKKEPACSWVE +NA+HMFVAND+ HPQR  I +KW E+  KIK++GYVPD+S
Sbjct: 479 KKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTS 538

Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
           HV+ + DQQERE  LQ HSEK+ALAFAL++TPPGSTIHIKKNIRVCGDCHSA K ASK V
Sbjct: 539 HVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAV 598

Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
            REIIVRDTNRFHHF+DG CSC DYW
Sbjct: 599 GREIIVRDTNRFHHFKDGACSCKDYW 624

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/558 (69%), Positives = 458/558 (82%), Gaps = 1/558 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
           KCT  K L + RIVHAHIL S F++DI M NT+LN YAKCG L+EARK+F++MP +D VT
Sbjct: 69  KCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVT 128

Query: 61  WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
           WT LISGYSQ+D+P +A++ F+QMLR G  PN+FTLSSV+KA+ A       G Q+H FC
Sbjct: 129 WTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA-ERRGCCGHQLHGFC 187

Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
           +K G+D NV+VGS+LLD+Y R+  MDDA  +F ALES+N+VSWNALIAGHAR+S  EKAL
Sbjct: 188 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKAL 247

Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
             F  MLR+GF P+HFSY+S+F A +STG LEQGKWVHA++IKSG +LVAF GNTL+DMY
Sbjct: 248 ELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMY 307

Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
           AKSGSI DA K+F+RL KRDVVSWNS+LT  AQHG GK  V WFE+M R GI PN+++FL
Sbjct: 308 AKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFL 367

Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
            VLTACSH+GLLDEG  Y+ LMKK G+ PE  HYVT VDLLGRAG L+RAL+FI EMPIE
Sbjct: 368 SVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIE 427

Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
           PTAA+W ALL ACRMHKN ELGAYAAE +FELDP D GPH++L NIYAS GR NDAAR R
Sbjct: 428 PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVR 487

Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
           K MKESGVKKEPACSWVE +NA+HMFVAND+ HPQR  I +KW E+  KIK++GYVPD+S
Sbjct: 488 KKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTS 547

Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
           HV+ + DQQERE  LQ HSEK+ALAFAL++TPPGSTIHIKKNIRVCGDCH+A K ASKVV
Sbjct: 548 HVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVV 607

Query: 541 EREIIVRDTNRFHHFRDG 558
            REIIVRDTNRFHHF+D 
Sbjct: 608 GREIIVRDTNRFHHFKDA 625

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/542 (71%), Positives = 457/542 (84%), Gaps = 2/542 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAF-KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMV 59
           +CT L K+++ RIVHAH++ S F  N + +QN I+N YAKCGCLD+AR++FDEMP KDMV
Sbjct: 96  ECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMV 155

Query: 60  TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAF 119
           TWTALI+G+SQN++P +A++LF QMLRLGL+PN FTLSS+LKASG+    D  G Q+HAF
Sbjct: 156 TWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDP-GTQLHAF 214

Query: 120 CLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKA 179
           CLKYGY  +VYVGS+L+DMYAR   MD A   F  + +K+EVSWNALI+GHARK EGE A
Sbjct: 215 CLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHA 274

Query: 180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
           L    +M R+ F+PTHF+YSSVF+A AS G+LEQGKWVHAH+IKSG +L+AF+GNTL+DM
Sbjct: 275 LHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDM 334

Query: 240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
           YAK+GSI+DA++VF+RL+K DVVSWN+MLTGCAQHGLGK T+  FE+MLR GI PN+++F
Sbjct: 335 YAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISF 394

Query: 300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPI 359
           LCVLTACSH+GLLDEG  YF LMKK+ VEP+  HYVTFVDLLGR GLLDRA +FIREMPI
Sbjct: 395 LCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPI 454

Query: 360 EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419
           EPTAAVWGALLGACRMHKN+ELG YAAER FELDPHDSGP +LL+NIYASAGR  D A+ 
Sbjct: 455 EPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKV 514

Query: 420 RKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479
           RKMMKESGVKK+PACSWVE +NAVH+FVAND+ HPQ   I  KW EIS KIK+IGYVPD+
Sbjct: 515 RKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDT 574

Query: 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
           SHVL + DQQERE KLQ HSEKLALAFAL++TP GS I IKKNIRVCGDCH+A KF SK+
Sbjct: 575 SHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKI 634

Query: 540 VE 541
            E
Sbjct: 635 YE 636

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Glycine max]

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/566 (65%), Positives = 458/566 (80%), Gaps = 1/566 (0%)

Query: 1   KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVT 60
           +CT L KLKE ++VH H+L S FK+D+ +QN++L  YA+CG L+ AR+LFDEMP +DMV+
Sbjct: 83  RCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVS 142

Query: 61  WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
           WT++I+GY+QND+  +A++LF +ML  G +PN+FTLSS++K  G  A+ +  GRQ+HA C
Sbjct: 143 WTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYN-CGRQIHACC 201

Query: 121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
            KYG   NV+VGSSL+DMYAR   + +A  +F  L  KNEVSWNALIAG+ARK EGE+AL
Sbjct: 202 WKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEAL 261

Query: 181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY 240
             F  M REG+ PT F+YS++ ++ +S G LEQGKW+HAH++KS  +LV +VGNTL+ MY
Sbjct: 262 ALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMY 321

Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
           AKSGSI DAEKVF++L+K DVVS NSML G AQHGLGK   + F++M+R GI PN +TFL
Sbjct: 322 AKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFL 381

Query: 301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
            VLTACSHA LLDEG+ YF LM+K+ +EP+ +HY T VDLLGRAGLLD+A  FI EMPIE
Sbjct: 382 SVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIE 441

Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
           PT A+WGALLGA +MHKN E+GAYAA+R+FELDP   G H LLANIYASAGR  D A+ R
Sbjct: 442 PTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVR 501

Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
           K+MK+SGVKKEPACSWVE +N+VH+FVAND AHPQ+  IHK W ++++KIK+IGYVPD+S
Sbjct: 502 KIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTS 561

Query: 481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
           HVL + DQQE+E  LQ HSEKLAL+FAL++TPPGSTI I KNIRVCGDCHSA K+ S VV
Sbjct: 562 HVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVV 621

Query: 541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
           +REIIVRDTNRFHHF DGFCSCGDYW
Sbjct: 622 KREIIVRDTNRFHHFCDGFCSCGDYW 647

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/565 (61%), Positives = 445/565 (78%), Gaps = 1/565 (0%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
           C   + L +AR +HAH+ GS F   + + N++++ Y KCG + +AR++FD MP +DM +W
Sbjct: 74  CARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSW 133

Query: 62  TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
           T+LI+GY+QND P+ A+ L   MLR   KPN FT +S+LKA+GA A+    G Q+HA  +
Sbjct: 134 TSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASS-GIGEQIHALTV 192

Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
           KY +  +VYVGS+LLDMYAR  +MD A  +F  LESKN VSWNALIAG ARK +GE  L 
Sbjct: 193 KYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLL 252

Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
            F+EM R GFE THF+YSSVF+A+A  G+LEQGKWVHAH+IKSG +L AFVGNT++DMYA
Sbjct: 253 MFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYA 312

Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
           KSGS+ DA KVF+R+ K+DVV+WNSMLT  AQ+GLG+  V  FE+M + G+  NQ+TFL 
Sbjct: 313 KSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLS 372

Query: 302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP 361
           +LTACSH GL+ EG+ YF +MK++ +EPE  HYVT VDLLGRAGLL+ AL FI +MP++P
Sbjct: 373 ILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKP 432

Query: 362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARK 421
           TAAVWGALLG+CRMHKN ++G +AA+ +FELDP D+GP +LL NIYAS G+ + AAR RK
Sbjct: 433 TAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRK 492

Query: 422 MMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSH 481
           MMK +GVKKEPACSWVE +N+VHMFVANDD HP+   I+KKW EIS +I++ GYVP++ +
Sbjct: 493 MMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDY 552

Query: 482 VLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVE 541
           VL + D+QER+AKLQ HSEK+ALAFALI+ P G+TI I KNIR+CGDCHSAF++ SKV +
Sbjct: 553 VLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFK 612

Query: 542 REIIVRDTNRFHHFRDGFCSCGDYW 566
           REI+VRDTNRFHHF  G CSCGDYW
Sbjct: 613 REIVVRDTNRFHHFSSGSCSCGDYW 637

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
TAIR|locus:2115130	691	AT4G37170 "AT4G37170" [Arabido	0.954	0.781	0.388	7.9e-129
TAIR|locus:2091546	628	AT3G13770 [Arabidopsis thalian	0.989	0.891	0.416	2.7e-123
TAIR|locus:2038603	868	AT2G27610 "AT2G27610" [Arabido	0.989	0.645	0.413	3.1e-122
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.989	0.692	0.413	5.2e-120
TAIR|locus:2149664	588	MEF1 "mitochondrial RNA editin	0.975	0.938	0.412	6e-119
TAIR|locus:2056794	630	REME1 "required for efficiency	0.987	0.887	0.388	2.6e-118
TAIR|locus:2205425	743	AT1G68930 "AT1G68930" [Arabido	0.952	0.725	0.4	5.9e-118
TAIR|locus:2082886	850	EMB2261 "embryo defective 2261	0.992	0.661	0.396	7.9e-117
TAIR|locus:2102852	657	CRR2 "AT3G46790" [Arabidopsis	0.998	0.859	0.399	2.1e-116
TAIR|locus:2125899	990	AT4G33170 [Arabidopsis thalian	0.984	0.562	0.396	3.4e-116

TAIR|locus:2115130 AT4G37170 "AT4G37170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1101 (392.6 bits), Expect = 7.9e-129, Sum P(2) = 7.9e-129
 Identities = 211/543 (38%), Positives = 335/543 (61%)

Query:    26 DIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQML 85
             D+   N ++N YA+ G L+EARKLFDEM  KD  +WTA+++GY + DQPE A++L+S M 
Sbjct:   150 DLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQ 209

Query:    86 RL-GLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQ 144
             R+   +PN FT+S +  A+ A     + G+++H   ++ G D +  + SSL+DMY +   
Sbjct:   210 RVPNSRPNIFTVS-IAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGC 268

Query:   145 MDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA 204
             +D+A  +F  +  K+ VSW ++I  + + S   +    FSE++     P  ++++ V  A
Sbjct:   269 IDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNA 328

Query:   205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSW 264
              A   + E GK VH ++ + G    +F  ++LVDMY K G+IE A+ V +   K D+VSW
Sbjct:   329 CADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSW 388

Query:   265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF-ALMK 323
              S++ GCAQ+G     +++F+ +L++G  P+ VTF+ VL+AC+HAGL+++G  +F ++ +
Sbjct:   389 TSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITE 448

Query:   324 KHGVEPEEAHYVTFVXXXXXXXXXXXXXKFIREMPIEPTAAVWGALLGACRMHKNVELGA 383
             KH +     HY   V               I EMP++P+  +W ++LG C  + N++L  
Sbjct:   449 KHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAE 508

Query:   384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAV 443
              AA+ +F+++P +   ++ +ANIYA+AG+  +  + RK M+E GV K P  SW E K   
Sbjct:   509 EAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKR 568

Query:   444 HMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLA 503
             H+F+A D +HP    I +  RE+ +K+K+ GYVP +S VL   + +++E  L  HSEKLA
Sbjct:   569 HVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLA 628

Query:   504 LAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCSCG 563
             +AFA++ST  G+ I + KN+R C DCH A KF S + +R+I VRD+ RFH F +G CSCG
Sbjct:   629 VAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCG 688

Query:   564 DYW 566
             DYW
Sbjct:   689 DYW 691

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)]

 Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
 Identities = 238/572 (41%), Positives = 353/572 (61%)

Query:     2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
             C   + L++ + VHAH++ + +     ++  +L  Y KC CL++ARK+ DEMP K++V+W
Sbjct:    62 CLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSW 121

Query:    62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVL----KASGAGATDDKFGRQVH 117
             TA+IS YSQ      A+ +F++M+R   KPN+FT ++VL    +ASG G      G+Q+H
Sbjct:   122 TAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLG-----LGKQIH 176

Query:   118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGE 177
                +K+ YD +++VGSSLLDMYA+  Q+ +A  +F  L  ++ VS  A+IAG+A+    E
Sbjct:   177 GLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDE 236

Query:   178 KALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV 237
             +AL  F  +  EG  P + +Y+S+ TAL+    L+ GK  H HV++      A + N+L+
Sbjct:   237 EALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLI 296

Query:   238 DMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKML-RNGIAPNQ 296
             DMY+K G++  A ++F+ + +R  +SWN+ML G ++HGLG+  +  F  M     + P+ 
Sbjct:   297 DMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDA 356

Query:   297 VTFLCVLTACSHAGLLDEGQGYFALMK--KHGVEPEEAHYVTFVXXXXXXXXXXXXXKFI 354
             VT L VL+ CSH  + D G   F  M   ++G +P   HY   V             +FI
Sbjct:   357 VTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFI 416

Query:   355 REMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLN 414
             + MP +PTA V G+LLGACR+H +V++G     R+ E++P ++G +++L+N+YASAGR  
Sbjct:   417 KRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWA 476

Query:   415 DAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIG 474
             D    R MM +  V KEP  SW++ +  +H F AND  HP+R  +  K +EIS K+KQ G
Sbjct:   477 DVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAG 536

Query:   475 YVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFK 534
             YVPD S VL   D++++E  L  HSEKLAL F LI+T  G  I + KN+R+C DCH+  K
Sbjct:   537 YVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAK 596

Query:   535 FASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
               SKV ERE+ +RD NRFH   DG CSCGDYW
Sbjct:   597 IFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
 Identities = 235/569 (41%), Positives = 357/569 (62%)

Query:     2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP-VKDMVT 60
             C +LK+L+    +H  ++   F  D  ++  ++ AY+KC  + +A +LF E+  V ++V+
Sbjct:   305 CANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVS 364

Query:    61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFC 120
             WTA+ISG+ QND  E A+ LFS+M R G++PN+FT S +L A    +  +     VHA  
Sbjct:   365 WTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE-----VHAQV 419

Query:   121 LKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKAL 180
             +K  Y+ +  VG++LLD Y +  ++++A  +F+ ++ K+ V+W+A++AG+A+  E E A+
Sbjct:   420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAI 479

Query:   181 RTFSEMLREGFEPTHFSYSSVFTALASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDM 239
             + F E+ + G +P  F++SS+    A+T  S+ QGK  H   IKS       V + L+ M
Sbjct:   480 KMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 539

Query:   240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF 299
             YAK G+IE AE+VF R  ++D+VSWNSM++G AQHG     +  F++M +  +  + VTF
Sbjct:   540 YAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTF 599

Query:   300 LCVLTACSHAGLLDEGQGYFALMKKH-GVEPEEAHYVTFVXXXXXXXXXXXXXKFIREMP 358
             + V  AC+HAGL++EG+ YF +M +   + P + H    V             K I  MP
Sbjct:   600 IGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP 659

Query:   359 IEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR 418
                 + +W  +L ACR+HK  ELG  AAE+I  + P DS  ++LL+N+YA +G   + A+
Sbjct:   660 NPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAK 719

Query:   419 ARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPD 478
              RK+M E  VKKEP  SW+E KN  + F+A D +HP +  I+ K  ++S ++K +GY PD
Sbjct:   720 VRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPD 779

Query:   479 SSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASK 538
             +S+VL   D + +EA L  HSE+LA+AF LI+TP GS + I KN+RVCGDCH   K  +K
Sbjct:   780 TSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAK 839

Query:   539 VVEREIIVRDTNRFHHFR-DGFCSCGDYW 566
             + EREI+VRD+NRFHHF  DG CSCGD+W
Sbjct:   840 IEEREIVVRDSNRFHHFSSDGVCSCGDFW 868

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 233/563 (41%), Positives = 339/563 (60%)

Query:     5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTAL 64
             L+ +   + +H + + S F + + +   +++ YAKCG L+ AR+LFD M  +++V+W ++
Sbjct:   249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query:    65 ISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYG 124
             I  Y QN+ P+ A+++F +ML  G+KP   ++   L A  A   D + GR +H   ++ G
Sbjct:   309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHAC-ADLGDLERGRFIHKLSVELG 367

Query:   125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFS 184
              D NV V +SL+ MY +  ++D A  +F  L+S+  VSWNA+I G A+      AL  FS
Sbjct:   368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427

Query:   185 EMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG 244
             +M     +P  F+Y SV TA+A        KW+H  V++S      FV   LVDMYAK G
Sbjct:   428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487

Query:   245 SIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT 304
             +I  A  +F+ + +R V +WN+M+ G   HG GKA +  FE+M +  I PN VTFL V++
Sbjct:   488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVIS 547

Query:   305 ACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVXXXXXXXXXXXXXKFIREMPIEPTA 363
             ACSH+GL++ G   F +MK+ + +E    HY   V              FI +MP++P  
Sbjct:   548 ACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607

Query:   364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM 423
              V+GA+LGAC++HKNV     AAER+FEL+P D G H+LLANIY +A       + R  M
Sbjct:   608 NVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSM 667

Query:   424 KESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVL 483
                G++K P CS VE KN VH F +   AHP    I+    ++   IK+ GYVPD++ VL
Sbjct:   668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL 727

Query:   484 SYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVERE 543
                +   +E  L  HSEKLA++F L++T  G+TIH++KN+RVC DCH+A K+ S V  RE
Sbjct:   728 G-VENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGRE 786

Query:   544 IIVRDTNRFHHFRDGFCSCGDYW 566
             I+VRD  RFHHF++G CSCGDYW
Sbjct:   787 IVVRDMQRFHHFKNGACSCGDYW 809

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:2149664 MEF1 "mitochondrial RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1171 (417.3 bits), Expect = 6.0e-119, P = 6.0e-119
 Identities = 228/553 (41%), Positives = 341/553 (61%)

Query:    14 VHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQ 73
             +H +++ S       + N ++N Y+K     ++R+ F++ P K   TW+++IS ++QN+ 
Sbjct:    37 LHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNEL 96

Query:    74 PENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS 133
             P  ++    +M+   L+P+   L S  K+    +  D  GR VH   +K GYD +V+VGS
Sbjct:    97 PWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCD-IGRSVHCLSMKTGYDADVFVGS 155

Query:   134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP 193
             SL+DMYA+  ++  A  +F  +  +N V+W+ ++ G+A+  E E+AL  F E L E    
Sbjct:   156 SLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAV 215

Query:   194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVF 253
               +S+SSV +  A++  LE G+ +H   IKS     +FVG++LV +Y+K G  E A +VF
Sbjct:   216 NDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVF 275

Query:   254 NRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD 313
             N +  +++  WN+ML   AQH   +  +  F++M  +G+ PN +TFL VL ACSHAGL+D
Sbjct:   276 NEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVD 335

Query:   314 EGQGYFALMKKHGVEPEEAHYVTFVXXXXXXXXXXXXXKFIREMPIEPTAAVWGALLGAC 373
             EG+ YF  MK+  +EP + HY + V             + I  MPI+PT +VWGALL +C
Sbjct:   336 EGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSC 395

Query:   374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPA 433
              +HKN EL A+AA+++FEL P  SG HI L+N YA+ GR  DAA+ARK++++ G KKE  
Sbjct:   396 TVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETG 455

Query:   434 CSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREA 493
              SWVE +N VH F A +  H +   I++K  E+ E++++ GY+ D+S+VL   D  E+  
Sbjct:   456 LSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQ 515

Query:   494 KLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFH 553
              ++ HSE+LA+AF LI+ P    I + KN+RVCGDCH+A KF S    R IIVRD NRFH
Sbjct:   516 TIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFH 575

Query:   554 HFRDGFCSCGDYW 566
              F DG CSC DYW
Sbjct:   576 RFEDGKCSCNDYW 588

GO:0005739 "mitochondrion" evidence=ISM

GO:0016554 "cytidine to uridine editing" evidence=IMP

TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 220/566 (38%), Positives = 346/566 (61%)

Query:     2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
             C   + + E  ++  H+  +  +  + + N ++N Y K   L++A +LFD+MP +++++W
Sbjct:    71 CISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISW 130

Query:    62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
             T +IS YS+    + A+ L   MLR  ++PN +T SSVL++   G +D    R +H   +
Sbjct:   131 TTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCN-GMSDV---RMLHCGII 186

Query:   122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
             K G + +V+V S+L+D++A+  + +DA  +F  + + + + WN++I G A+ S  + AL 
Sbjct:   187 KEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALE 246

Query:   182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
              F  M R GF     + +SV  A      LE G   H H++K    L+  + N LVDMY 
Sbjct:   247 LFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLI--LNNALVDMYC 304

Query:   242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
             K GS+EDA +VFN++ +RDV++W++M++G AQ+G  +  ++ FE+M  +G  PN +T + 
Sbjct:   305 KCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364

Query:   302 VLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVXXXXXXXXXXXXXKFIREMPIE 360
             VL ACSHAGLL++G  YF  MKK +G++P   HY   +             K + EM  E
Sbjct:   365 VLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECE 424

Query:   361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
             P A  W  LLGACR+ +N+ L  YAA+++  LDP D+G + LL+NIYA++ + +     R
Sbjct:   425 PDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIR 484

Query:   421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS 480
               M++ G+KKEP CSW+E    +H F+  D++HPQ   + KK  ++  ++  IGYVP+++
Sbjct:   485 TRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETN 544

Query:   481 HVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVV 540
              VL   + ++ E  L+ HSEKLALAF L++ P    I I+KN+R+CGDCH   K ASK+ 
Sbjct:   545 FVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLE 604

Query:   541 EREIIVRDTNRFHHFRDGFCSCGDYW 566
              R I++RD  R+HHF+DG CSCGDYW
Sbjct:   605 IRSIVIRDPIRYHHFQDGKCSCGDYW 630

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009451 "RNA modification" evidence=IMP

TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1098 (391.6 bits), Expect = 5.9e-118, Sum P(2) = 5.9e-118
 Identities = 218/545 (40%), Positives = 325/545 (59%)

Query:    24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQ 83
             +N + M N+++     CG +++A +LF  M  KD V+W A+I G +QN   + AI  F +
Sbjct:   203 RNTV-MYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFRE 260

Query:    84 MLRLGLKPNQFTLSSVLKASGA-GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARF 142
             M   GLK +Q+   SVL A G  GA ++  G+Q+HA  ++  +  ++YVGS+L+DMY + 
Sbjct:   261 MKVQGLKMDQYPFGSVLPACGGLGAINE--GKQIHACIIRTNFQDHIYVGSALIDMYCKC 318

Query:   143 DQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVF 202
               +  A  +F  ++ KN VSW A++ G+ +    E+A++ F +M R G +P H++     
Sbjct:   319 KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAI 378

Query:   203 TALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVV 262
             +A A+  SLE+G   H   I SG      V N+LV +Y K G I+D+ ++FN +  RD V
Sbjct:   379 SACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAV 438

Query:   263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALM 322
             SW +M++  AQ G    T++ F+KM+++G+ P+ VT   V++ACS AGL+++GQ YF LM
Sbjct:   439 SWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLM 498

Query:   323 -KKHGVEPEEAHYVTFVXXXXXXXXXXXXXKFIREMPIEPTAAVWGALLGACRMHKNVEL 381
               ++G+ P   HY   +             +FI  MP  P A  W  LL ACR   N+E+
Sbjct:   499 TSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEI 558

Query:   382 GAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKN 441
             G +AAE + ELDPH    + LL++IYAS G+ +  A+ R+ M+E  VKKEP  SW++ K 
Sbjct:   559 GKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKG 618

Query:   442 AVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEK 501
              +H F A+D++ P    I+ K  E++ KI   GY PD+S V    ++  +   L  HSE+
Sbjct:   619 KLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSER 678

Query:   502 LALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGFCS 561
             LA+AF LI  P G  I + KN+RVC DCH+A K  S V  REI+VRD  RFH F+DG CS
Sbjct:   679 LAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCS 738

Query:   562 CGDYW 566
             CGD+W
Sbjct:   739 CGDFW 743

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)]

 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 228/575 (39%), Positives = 343/575 (59%)

Query:     2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKC---GCLDEARKLFDEMPVKDM 58
             C  L+ L   + +H+  + S   +D+  + ++++ YAKC   G +D+ RK+FD M    +
Sbjct:   279 CAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336

Query:    59 VTWTALISGYSQN-DQPENAIILFSQMLRLG-LKPNQFTLSSVLKASGAGATDDKFGRQV 116
             ++WTALI+GY +N +    AI LFS+M+  G ++PN FT SS  KA G   +D + G+QV
Sbjct:   337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACG-NLSDPRVGKQV 395

Query:   117 HAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEG 176
                  K G   N  V +S++ M+ + D+M+DA   F +L  KN VS+N  + G  R    
Sbjct:   396 LGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455

Query:   177 EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236
             E+A +  SE+       + F+++S+ + +A+ GS+ +G+ +H+ V+K G      V N L
Sbjct:   456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query:   237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296
             + MY+K GSI+ A +VFN +  R+V+SW SM+TG A+HG     +  F +M+  G+ PN+
Sbjct:   516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575

Query:   297 VTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVXXXXXXXXXXXXXKFIR 355
             VT++ +L+ACSH GL+ EG  +F ++ + H ++P+  HY   V             +FI 
Sbjct:   576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query:   356 EMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND 415
              MP +    VW   LGACR+H N ELG  AA +I ELDP++   +I L+NIYA AG+  +
Sbjct:   636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEE 695

Query:   416 AARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGY 475
             +   R+ MKE  + KE  CSW+E  + +H F   D AHP    I+ +   +  +IK+ GY
Sbjct:   696 STEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGY 755

Query:   476 VPDSSHVLSYA----DQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHS 531
             VPD+  VL       D+ E+E  L  HSEK+A+AF LIST     + + KN+RVCGDCH+
Sbjct:   756 VPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHN 815

Query:   532 AFKFASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
             A K+ S V  REI++RD NRFHHF+DG CSC DYW
Sbjct:   816 AMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 228/571 (39%), Positives = 350/571 (61%)

Query:     2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
             C H   L +A  VH HIL +    D  +   ++  Y+  G +D ARK+FD+   + +  W
Sbjct:    87 CGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVW 146

Query:    62 TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAG-ATDDKF--GRQVHA 118
              AL    +     E  + L+ +M R+G++ ++FT + VLKA  A   T +    G+++HA
Sbjct:   147 NALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHA 206

Query:   119 FCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEK 178
                + GY  +VY+ ++L+DMYARF  +D A ++F  +  +N VSW+A+IA +A+  +  +
Sbjct:   207 HLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFE 266

Query:   179 ALRTFSEMLREGFE--PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL 236
             ALRTF EM+RE  +  P   +  SV  A AS  +LEQGK +H ++++ G   +  V + L
Sbjct:   267 ALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISAL 326

Query:   237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ 296
             V MY + G +E  ++VF+R+  RDVVSWNS+++    HG GK  ++ FE+ML NG +P  
Sbjct:   327 VTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTP 386

Query:   297 VTFLCVLTACSHAGLLDEGQGYFALM-KKHGVEPEEAHYVTFVXXXXXXXXXXXXXKFIR 355
             VTF+ VL ACSH GL++EG+  F  M + HG++P+  HY   V             K ++
Sbjct:   387 VTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQ 446

Query:   356 EMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND 415
             +M  EP   VWG+LLG+CR+H NVEL   A+ R+F L+P ++G ++LLA+IYA A   ++
Sbjct:   447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDE 506

Query:   416 AARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGY 475
               R +K+++  G++K P   W+E +  ++ FV+ D+ +P    IH    +++E +K+ GY
Sbjct:   507 VKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGY 566

Query:   476 VPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKF 535
             +P +  VL   + +E+E  +  HSEKLALAF LI+T  G  I I KN+R+C DCH   KF
Sbjct:   567 IPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKF 626

Query:   536 ASKVVEREIIVRDTNRFHHFRDGFCSCGDYW 566
              SK +E+EI+VRD NRFH F++G CSCGDYW
Sbjct:   627 ISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657

GO:0009507 "chloroplast" evidence=ISS

GO:0031425 "chloroplast RNA processing" evidence=IMP

GO:0031426 "polycistronic mRNA processing" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 222/560 (39%), Positives = 346/560 (61%)

Query:     8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISG 67
             L  ++ VH H +     +D  +   +++AY++  C+ EA  LF+     D+V W A+++G
Sbjct:   433 LSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAG 491

Query:    68 YSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDW 127
             Y+Q+      + LF+ M + G + + FTL++V K  G     ++ G+QVHA+ +K GYD 
Sbjct:   492 YTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQ-GKQVHAYAIKSGYDL 550

Query:   128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML 187
             +++V S +LDMY +   M  A F F ++   ++V+W  +I+G     E E+A   FS+M 
Sbjct:   551 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMR 610

Query:   188 REGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE 247
               G  P  F+ +++  A +   +LEQG+ +HA+ +K       FVG +LVDMYAK GSI+
Sbjct:   611 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSID 670

Query:   248 DAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307
             DA  +F R+   ++ +WN+ML G AQHG GK T++ F++M   GI P++VTF+ VL+ACS
Sbjct:   671 DAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACS 730

Query:   308 HAGLLDEGQGYFALMK-KHGVEPEEAHYVTFVXXXXXXXXXXXXXKFIREMPIEPTAAVW 366
             H+GL+ E   +   M   +G++PE  HY                   I  M +E +A+++
Sbjct:   731 HSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMY 790

Query:   367 GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES 426
               LL ACR+  + E G   A ++ EL+P DS  ++LL+N+YA+A + ++   AR MMK  
Sbjct:   791 RTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGH 850

Query:   427 GVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYA 486
              VKK+P  SW+E KN +H+FV +D ++ Q  +I++K +++   IKQ GYVP++   L   
Sbjct:   851 KVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDV 910

Query:   487 DQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIV 546
             +++E+E  L  HSEKLA+AF L+STPP + I + KN+RVCGDCH+A K+ +KV  REI++
Sbjct:   911 EEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970

Query:   547 RDTNRFHHFRDGFCSCGDYW 566
             RD NRFH F+DG CSCGDYW
Sbjct:   971 RDANRFHRFKDGICSCGDYW 990

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LIQ7	PP252_ARATH	No assigned EC number	0.6996	0.9982	0.8925	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	566
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-176
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-166
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-55
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-33
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	1e-23
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-12
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-06
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	8e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.004
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.004

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  512 bits (1321), Expect = e-176
 Identities = 223/567 (39%), Positives = 339/567 (59%), Gaps = 4/567 (0%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
           C  LK ++  + V+ H+  S F+ D  M N +L  + KCG L +AR+LFDEMP +++ +W
Sbjct: 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASW 192

Query: 62  TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
             +I G         A  LF +M   G      T   +L+AS AG    + G+Q+H   L
Sbjct: 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS-AGLGSARAGQQLHCCVL 251

Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
           K G   + +V  +L+DMY++   ++DA  +F  +  K  V+WN+++AG+A     E+AL 
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311

Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNT-LVDMY 240
            + EM   G     F++S +    +    LE  K  HA +I++G  L   V NT LVD+Y
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLY 370

Query: 241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL 300
           +K G +EDA  VF+R+ +++++SWN+++ G   HG G   V  FE+M+  G+APN VTFL
Sbjct: 371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430

Query: 301 CVLTACSHAGLLDEGQGYFALMKK-HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPI 359
            VL+AC ++GL ++G   F  M + H ++P   HY   ++LLGR GLLD A   IR  P 
Sbjct: 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490

Query: 360 EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA 419
           +PT  +W ALL ACR+HKN+ELG  AAE+++ + P     +++L N+Y S+GR  +AA+ 
Sbjct: 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550

Query: 420 RKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS 479
            + +K  G+   PAC+W+E K   H F + D  HPQ   I++K  E+ ++I + GYV + 
Sbjct: 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610

Query: 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
           + +L   D+ E +   + HSEKLA+AF LI+T   + + I ++ R+C DCH   KF + V
Sbjct: 611 NELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALV 670

Query: 540 VEREIIVRDTNRFHHFRDGFCSCGDYW 566
            +REI+VRD +RFHHF+ G CSCGDYW
Sbjct: 671 TKREIVVRDASRFHHFKLGKCSCGDYW 697

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  493 bits (1271), Expect = e-166
 Identities = 229/565 (40%), Positives = 342/565 (60%), Gaps = 7/565 (1%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
           C  L   +  R +H +++ + F  D+++ N+++  Y   G   EA K+F  M  KD V+W
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357

Query: 62  TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
           TA+ISGY +N  P+ A+  ++ M +  + P++ T++SVL A  A   D   G ++H    
Sbjct: 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC-ACLGDLDVGVKLHELAE 416

Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
           + G    V V ++L++MY++   +D A  +F  +  K+ +SW ++IAG    +   +AL 
Sbjct: 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476

Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
            F +ML    +P   +  +  +A A  G+L  GK +HAHV+++G     F+ N L+D+Y 
Sbjct: 477 FFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535

Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
           + G +  A   FN   ++DVVSWN +LTG   HG G   V  F +M+ +G+ P++VTF+ 
Sbjct: 536 RCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594

Query: 302 VLTACSHAGLLDEGQGYFALMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE 360
           +L ACS +G++ +G  YF  M+ K+ + P   HY   VDLLGRAG L  A  FI +MPI 
Sbjct: 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT 654

Query: 361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR 420
           P  AVWGALL ACR+H++VELG  AA+ IFELDP+  G +ILL N+YA AG+ ++ AR R
Sbjct: 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714

Query: 421 KMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGY-VPDS 479
           K M+E+G+  +P CSWVE K  VH F+ +D++HPQ   I+       EK+K  G    +S
Sbjct: 715 KTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774

Query: 480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKV 539
           S       +  ++     HSE+LA+AF LI+T PG  I + KN+ +C +CH+  KF SK+
Sbjct: 775 SS--MDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKI 832

Query: 540 VEREIIVRDTNRFHHFRDGFCSCGD 564
           V REI VRDT +FHHF+DG CSCGD
Sbjct: 833 VRREISVRDTEQFHHFKDGECSCGD 857

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  200 bits (510), Expect = 2e-55
 Identities = 109/399 (27%), Positives = 209/399 (52%), Gaps = 11/399 (2%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTW 61
           C   + ++E   V +  L S     + + N +L+ + + G L  A  +F +MP +D+ +W
Sbjct: 96  CEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSW 155

Query: 62  TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL 121
             L+ GY++    + A+ L+ +ML  G++P+ +T   VL+  G G  D   GR+VHA  +
Sbjct: 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG-GIPDLARGREVHAHVV 214

Query: 122 KYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALR 181
           ++G++ +V V ++L+ MY +   +  A  +F  +  ++ +SWNA+I+G+    E  + L 
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274

Query: 182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA 241
            F  M     +P   + +SV +A    G    G+ +H +V+K+G  +   V N+L+ MY 
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334

Query: 242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLC 301
             GS  +AEKVF+R+  +D VSW +M++G  ++GL    +  +  M ++ ++P+++T   
Sbjct: 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394

Query: 302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYV----TFVDLLGRAGLLDRALKFIREM 357
           VL+AC+  G LD G     L ++ G+      YV      +++  +   +D+AL+    +
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGL----ISYVVVANALIEMYSKCKCIDKALEVFHNI 450

Query: 358 PIEPTAAVWGALL-GACRMHKNVELGAYAAERIFELDPH 395
           P E     W +++ G    ++  E   +  + +  L P+
Sbjct: 451 P-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN 488

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  134 bits (340), Expect = 2e-33
 Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 1/277 (0%)

Query: 100 LKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKN 159
           L  +       +  + V+      G++ + Y+ + +L M+ +   + DA  LF  +  +N
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN 188

Query: 160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHA 219
             SW  +I G        +A   F EM  +G +    ++  +  A A  GS   G+ +H 
Sbjct: 189 LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248

Query: 220 HVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKA 279
            V+K+G     FV   L+DMY+K G IEDA  VF+ + ++  V+WNSML G A HG  + 
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308

Query: 280 TVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339
            +  + +M  +G++ +Q TF  ++   S   LL+  +   A + + G   +       VD
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368

Query: 340 LLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMH 376
           L  + G ++ A      MP +   + W AL+     H
Sbjct: 369 LYSKWGRMEDARNVFDRMPRKNLIS-WNALIAGYGNH 404

Length = 697

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score = 95.5 bits (238), Expect = 1e-23
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 21/131 (16%)

Query: 432 PACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSS------HVLSY 485
           P C W E        ++ D +HP          E+ ++IK  G VP++           +
Sbjct: 1   PGCVWSE----GKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50

Query: 486 ADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREII 545
            D   +   L  H+EK ALA+ L++T       IK   R+CGDCH  F++ +K   REII
Sbjct: 51  RDNGIKGKLLASHAEKQALAYGLLTTRI-----IKVLKRMCGDCHEFFRYIAKYTGREII 105

Query: 546 VRDTNRFHHFR 556
           VRD +RFHHF+
Sbjct: 106 VRDPSRFHHFK 116

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 43/210 (20%)

Query: 234 NTLVDMYAKSGSIEDAEKVF----NRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR 289
           N L+ + A S  I+ A +V        LK D   + ++++ CA+ G   A    F +M+ 
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500

Query: 290 NGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDR 349
            G+  N  TF  ++  C+ AG + +  G + +M+   V+P+   +   +   G++G +DR
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560

Query: 350 ALKFIREM-----PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA 404
           A   + EM     PI+P     GAL+ AC                               
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKAC------------------------------- 589

Query: 405 NIYASAGRLNDAARARKMMKESGVKKEPAC 434
              A+AG+++ A    +M+ E  +K  P  
Sbjct: 590 ---ANAGQVDRAKEVYQMIHEYNIKGTPEV 616

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 73/320 (22%), Positives = 133/320 (41%), Gaps = 28/320 (8%)

Query: 157 SKNEVSWNALIAGHARKSEGEKALRTFSEMLREG--FEPTHFSYSSVFTALASTGSLEQG 214
            K+ VS  + I          +AL  F E+L  G  F     +Y ++  A  +  S+   
Sbjct: 84  RKSGVSLCSQIEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCV 142

Query: 215 KWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH 274
           K V+ HV  SG +   ++ N ++ M+ K G + DA ++F+ + +R++ SW +++ G    
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202

Query: 275 GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHY 334
           G  +     F +M  +G      TF+ +L A +  G    GQ     + K GV  +    
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262

Query: 335 VTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDP 394
              +D+  + G ++ A      MP E T   W ++L    +H   E    A    +E+  
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSE---EALCLYYEM-- 316

Query: 395 HDSGPHI------LLANIYASAGRLNDAARARKMMKESGVKKEPA---------CSWVET 439
            DSG  I      ++  I++    L  A +A   +  +G   +             W   
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376

Query: 440 KNAVHMFVANDDAHPQRAMI 459
           ++A ++F    D  P++ +I
Sbjct: 377 EDARNVF----DRMPRKNLI 392

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.0 bits (144), Expect = 2e-11
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 158 KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALA 206
            + V++N LI G+ +K + E+AL+ F+EM + G +P  ++YS +   L 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 72/353 (20%), Positives = 144/353 (40%), Gaps = 51/353 (14%)

Query: 34  LNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRL----GL 89
             A  K   + EA +    +    + T+  L+S  + +   + A+    ++LRL    GL
Sbjct: 413 FKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGAL----RVLRLVQEAGL 468

Query: 90  KPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDA 148
           K + +   + +   + +G  D  F  +V    +  G + NV+   +L+D  AR  Q+  A
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMF--EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526

Query: 149 WFLFTALESKN----EVSWNALIAGHARKSEGEKALRTFSEMLREG--FEPTHFSYSSVF 202
           +  +  + SKN     V +NALI+   +    ++A    +EM  E    +P H +  ++ 
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586

Query: 203 TALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVV 262
            A A+ G +++ K V+  + +   +    V    V+  ++ G  + A  +          
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI---------- 636

Query: 263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALM 322
                                ++ M + G+ P++V F  ++    HAG LD+        
Sbjct: 637 ---------------------YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675

Query: 323 KKHGVEPEEAHYVTFVDLLGRAGLLDRALKF---IREMPIEPTAAVWGALLGA 372
           +K G++     Y + +     A    +AL+    I+ + + PT +   AL+ A
Sbjct: 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 57.0 bits (139), Expect = 9e-11
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 56  KDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA 102
            D+VT+  LI GY +  + E A+ LF++M + G+KPN +T S ++  
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 62.6 bits (152), Expect = 4e-10
 Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 21/228 (9%)

Query: 166 LIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSG 225
           LI+  A+  + +     F EM+  G E    ++ ++    A  G +   K   A+ I   
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV--AKAFGAYGIMRS 535

Query: 226 GQL----VAFVGNTLVDMYAKSGSIEDAEKVFNRL------LKRDVVSWNSMLTGCAQHG 275
             +    V F  N L+    +SG+++ A  V   +      +  D ++  +++  CA  G
Sbjct: 536 KNVKPDRVVF--NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593

Query: 276 -LGKATVRWFEKMLR-NGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAH 333
            + +A  +   +M+    I      +   + +CS  G  D     +  MKK GV+P+E  
Sbjct: 594 QVDRA--KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651

Query: 334 YVTFVDLLGRAGLLDRALKFIREMP---IEPTAAVWGALLGACRMHKN 378
           +   VD+ G AG LD+A + +++     I+     + +L+GAC   KN
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH 308
           DVV++N+++ G  + G  +  ++ F +M + GI PN  T+  ++     
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.7 bits (120), Expect = 3e-08
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 31 NTILNAYAKCGCLDEARKLFDEMPVK----DMVTWTALISGYSQ 70
          NT+++ Y K G ++EA KLF+EM  +    ++ T++ LI G  +
Sbjct: 7  NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.5 bits (104), Expect = 4e-06
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 234 NTLVDMYAKSGSIEDAEKVFNRLLKR----DVVSWNSMLTGCAQ 273
           NTL+D Y K G +E+A K+FN + KR    +V +++ ++ G  +
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 59 VTWTALISGYSQNDQPENAIILFSQMLRLGL 89
          VT+ +LISGY +  + E A+ LF +M   G+
Sbjct: 1  VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 161 VSWNALIAGHARKSEGEKALRTFSEMLREGF 191
           V++N+LI+G+ +  + E+AL  F EM  +G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPT 194
           V++N LI G  +    E+AL  F EM   G EP 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 33  ILNAYAKCGCLDEAR---KLFDEMPVKDM-VTWTALISGYSQNDQPENAIILFSQMLRLG 88
           ++ A A  G +D A+   ++  E  +K     +T  ++  SQ    + A+ ++  M + G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644

Query: 89  LKPNQFTLSSVLKASG-AGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDD 147
           +KP++   S+++  +G AG  D  F   +     K G        SSL+   +       
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFE--ILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702

Query: 148 AWFLFTALES---KNEVS-WNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFT 203
           A  L+  ++S   +  VS  NALI      ++  KAL   SEM R G  P   +YS +  
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762

Query: 204 A 204
           A
Sbjct: 763 A 763

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 31 NTILNAYAKCGCLDEARKLFDEMP 54
          NT+++   + G +DEA +L DEM 
Sbjct: 11 NTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 31 NTILNAYAKCGCLDEARKLFDEM 53
          N++++ Y K G L+EA +LF EM
Sbjct: 4  NSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 8/31 (25%), Positives = 19/31 (61%)

Query: 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGI 292
           V++NS+++G  + G  +  +  F++M   G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN 295
           V++N+++ G  + G  +  +  F++M   GI P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 31 NTILNAYAKCGCLDEARKLFDEMPVKDMV 59
          NT+++   K G ++EA +LF EM  + + 
Sbjct: 4  NTLIDGLCKAGRVEEALELFKEMKERGIE 32

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.0 bits (87), Expect = 0.001
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 294 PNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD 339
           P+ VT+  ++      G ++E    F  MKK G++P    Y   +D
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 59 VTWTALISGYSQNDQPENAIILFSQMLRLGLKPN 92
          VT+  LI G  +  + E A+ LF +M   G++P+
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 234 NTLVDMYAKSGSIEDAEKVFNRLLKRDVV 262
           NTL+D   K+G +E+A ++F  + +R + 
Sbjct: 4   NTLIDGLCKAGRVEEALELFKEMKERGIE 32

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 58 MVTWTALISGYSQNDQPENAIILFSQMLRLGLKP 91
          + T+ AL+   ++   P+ A+ +  +M   GLKP
Sbjct: 1  LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	566
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.88
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.8
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.75
PRK14574	822	hmsH outer membrane protein; Provisional	99.71
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.7
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.61
KOG2003	840	consensus TPR repeat-containing protein [General f	99.6
KOG2076	895	consensus RNA polymerase III transcription factor	99.58
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.55
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.54
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.53
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.52
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.51
KOG1126	638	consensus DNA-binding cell division cycle control	99.5
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.49
KOG2076	895	consensus RNA polymerase III transcription factor	99.49
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.48
KOG1126	638	consensus DNA-binding cell division cycle control	99.48
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.48
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.46
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.46
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.45
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.44
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.43
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.43
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.38
KOG2003	840	consensus TPR repeat-containing protein [General f	99.38
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.37
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.36
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.36
PF13041	50	PPR_2: PPR repeat family	99.35
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.34
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.32
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.31
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.31
PF13041	50	PPR_2: PPR repeat family	99.3
PRK12370	553	invasion protein regulator; Provisional	99.29
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.27
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.22
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.21
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.21
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.18
PRK11189	296	lipoprotein NlpI; Provisional	99.14
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.13
PRK12370	553	invasion protein regulator; Provisional	99.13
KOG1129	478	consensus TPR repeat-containing protein [General f	99.13
KOG1129	478	consensus TPR repeat-containing protein [General f	99.08
PRK11189	296	lipoprotein NlpI; Provisional	99.05
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.02
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.01
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.99
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.99
KOG1125	579	consensus TPR repeat-containing protein [General f	98.97
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.97
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.96
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.93
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.89
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.89
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.87
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.86
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.85
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.85
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.84
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.84
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.79
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.76
PRK04841	903	transcriptional regulator MalT; Provisional	98.71
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.71
PRK04841	903	transcriptional regulator MalT; Provisional	98.7
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.64
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.62
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.62
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.6
PF12854	34	PPR_1: PPR repeat	98.6
PLN02789	320	farnesyltranstransferase	98.6
PF12854	34	PPR_1: PPR repeat	98.59
PRK15359	144	type III secretion system chaperone protein SscB;	98.59
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.58
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.58
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.56
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.55
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.53
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.5
PRK15359	144	type III secretion system chaperone protein SscB;	98.5
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.47
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.46
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.42
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.4
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.39
KOG1125	579	consensus TPR repeat-containing protein [General f	98.39
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.36
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.34
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.32
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.3
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.3
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.29
PLN02789	320	farnesyltranstransferase	98.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.26
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.25
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.22
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.22
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.18
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.16
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.15
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.07
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.05
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.04
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.01
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.99
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.98
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.97
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.96
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.94
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.9
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.89
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.88
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.87
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.82
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.82
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.81
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.8
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.8
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.78
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.72
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.7
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.67
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.62
KOG0553	304	consensus TPR repeat-containing protein [General f	97.62
KOG0553	304	consensus TPR repeat-containing protein [General f	97.6
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.6
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.58
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.58
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.56
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.55
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.54
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.53
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.52
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.51
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.48
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.48
PF13371	73	TPR_9: Tetratricopeptide repeat	97.47
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.4
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.39
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.39
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.37
PRK15331	165	chaperone protein SicA; Provisional	97.34
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.28
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.26
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.25
PF13431	34	TPR_17: Tetratricopeptide repeat	97.24
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.18
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.18
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.17
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.16
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.14
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.13
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.13
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.1
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.08
PF12688	120	TPR_5: Tetratrico peptide repeat	97.04
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.02
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.0
PF12688	120	TPR_5: Tetratrico peptide repeat	96.98
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.97
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.92
PRK10803	263	tol-pal system protein YbgF; Provisional	96.92
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.88
PF13371	73	TPR_9: Tetratricopeptide repeat	96.84
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.84
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.82
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.79
PF13428	44	TPR_14: Tetratricopeptide repeat	96.74
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.58
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.43
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.3
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.29
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.24
KOG4555	175	consensus TPR repeat-containing protein [Function	96.21
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.21
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.18
PRK10803	263	tol-pal system protein YbgF; Provisional	96.11
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.1
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.97
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.94
PF13512	142	TPR_18: Tetratricopeptide repeat	95.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.79
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.79
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.7
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.65
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.61
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.55
PRK11906	458	transcriptional regulator; Provisional	95.44
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.39
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.39
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.38
KOG3941	406	consensus Intermediate in Toll signal transduction	95.28
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.24
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.04
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.87
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.86
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.84
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.73
KOG3941	406	consensus Intermediate in Toll signal transduction	94.69
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.62
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.6
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.54
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.39
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.33
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.32
PRK11906	458	transcriptional regulator; Provisional	94.23
PRK15331	165	chaperone protein SicA; Provisional	94.17
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.13
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.8
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.8
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.63
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.45
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.28
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.02
KOG4234	271	consensus TPR repeat-containing protein [General f	92.8
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	92.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.44
KOG1258	577	consensus mRNA processing protein [RNA processing	92.39
PRK09687	280	putative lyase; Provisional	92.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	92.16
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.12
KOG4555	175	consensus TPR repeat-containing protein [Function	92.1
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.09
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.96
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.91
KOG1585	308	consensus Protein required for fusion of vesicles	91.77
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.67
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.32
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.31
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.86
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.7
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	90.47
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.44
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.4
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	89.84
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.79
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	89.57
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.53
KOG2610	491	consensus Uncharacterized conserved protein [Funct	89.48
PF13428	44	TPR_14: Tetratricopeptide repeat	89.45
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.38
PRK11619	644	lytic murein transglycosylase; Provisional	89.25
KOG1941	518	consensus Acetylcholine receptor-associated protei	89.09
PRK09687	280	putative lyase; Provisional	89.05
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	89.02
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	88.76
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.56
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	88.55
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.38
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	88.37
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.27
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.12
PF13512	142	TPR_18: Tetratricopeptide repeat	88.03
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.01
PRK10941	269	hypothetical protein; Provisional	87.94
COG4105	254	ComL DNA uptake lipoprotein [General function pred	87.84
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.84
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	87.46
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.07
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.81
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.51
PF13431	34	TPR_17: Tetratricopeptide repeat	86.28
KOG1586	288	consensus Protein required for fusion of vesicles	85.91
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.87
KOG4570	418	consensus Uncharacterized conserved protein [Funct	85.55
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	85.34
KOG1550	552	consensus Extracellular protein SEL-1 and related	84.91
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	84.18
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.18
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	84.11
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	83.94
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.68
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	83.29
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	82.97
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.47
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.04
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	82.02
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	81.59
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	81.4
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.38
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	81.33
KOG1586	288	consensus Protein required for fusion of vesicles	81.1
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	80.78
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	80.72
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	80.55
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	80.5
COG3947	361	Response regulator containing CheY-like receiver a	80.23
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	80.11
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	80.09
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	80.04

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.2e-118  Score=957.56  Aligned_cols=565  Identities=39%  Similarity=0.720  Sum_probs=557.7

Q ss_pred             CCCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067            1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIIL   80 (566)
Q Consensus         1 ac~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l   80 (566)
                      +|++.++++.|+++|..|.+.|+.||+.++|.|+.+|+++|++++|+++|++|+.||+++||+||.+|++.|++++|+++
T Consensus       132 a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~l  211 (697)
T PLN03081        132 ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL  211 (697)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh
Q 047067           81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE  160 (566)
Q Consensus        81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~  160 (566)
                      |++|.+.|+.||..||+.++.+|+..+... .++++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+
T Consensus       212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~-~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~  290 (697)
T PLN03081        212 FREMWEDGSDAEPRTFVVMLRASAGLGSAR-AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT  290 (697)
T ss_pred             HHHHHHhCCCCChhhHHHHHHHHhcCCcHH-HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCCh
Confidence            999999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067          161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY  240 (566)
Q Consensus       161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  240 (566)
                      ++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|+.||..++++|+++|
T Consensus       291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y  370 (697)
T PLN03081        291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY  370 (697)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       241 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      +++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus       371 ~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~  450 (697)
T PLN03081        371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ  450 (697)
T ss_pred             HHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             hHH-hhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          321 LMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       321 ~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      .|. +.|+.|+..+|++++++|++.|++++|.+++++|++.|+..+|++|+.+|..+|+++.|..+++++++++|++..+
T Consensus       451 ~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~  530 (697)
T PLN03081        451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN  530 (697)
T ss_pred             HHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc
Confidence            665 5799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCC
Q 047067          400 HILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS  479 (566)
Q Consensus       400 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~p~~  479 (566)
                      |..|+++|++.|+|++|.++++.|+++|+.+.|++||+++++.+|.|.+||..||+..+|+..+.++..+|++.||.||+
T Consensus       531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~  610 (697)
T PLN03081        531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE  610 (697)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccHHHHHhhhhhhhHHHHHHHhhhcCCCCCeEEEEccccccCCCchhhHhhhhhcCceEEEecCCccccccccc
Q 047067          480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGF  559 (566)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~  559 (566)
                      ..+++++++++|+..+..|||+||++|||+++++++||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+
T Consensus       611 ~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~  690 (697)
T PLN03081        611 NELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGK  690 (697)
T ss_pred             chhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC
Q 047067          560 CSCGDYW  566 (566)
Q Consensus       560 cs~~~~~  566 (566)
                      |||+|||
T Consensus       691 csc~d~w  697 (697)
T PLN03081        691 CSCGDYW  697 (697)
T ss_pred             ccccccC
Confidence            9999999

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.2e-113  Score=938.90  Aligned_cols=560  Identities=41%  Similarity=0.727  Sum_probs=550.4

Q ss_pred             CCCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067            1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIIL   80 (566)
Q Consensus         1 ac~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l   80 (566)
                      +|++.|+++.|+++|..+.+.|+.||+.+||+|+.+|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++
T Consensus       297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l  376 (857)
T PLN03077        297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET  376 (857)
T ss_pred             HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh
Q 047067           81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE  160 (566)
Q Consensus        81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~  160 (566)
                      |++|.+.|+.||..||++++.+|++.|+.+ .+.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+
T Consensus       377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~-~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~  455 (857)
T PLN03077        377 YALMEQDNVSPDEITIASVLSACACLGDLD-VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV  455 (857)
T ss_pred             HHHHHHhCCCCCceeHHHHHHHHhccchHH-HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence            999999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067          161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY  240 (566)
Q Consensus       161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  240 (566)
                      ++||+||.+|.++|+.++|+++|++|.. +++||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|
T Consensus       456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y  534 (857)
T PLN03077        456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY  534 (857)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence            9999999999999999999999999986 599999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       241 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      +++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus       535 ~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~  613 (857)
T PLN03077        535 VRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH  613 (857)
T ss_pred             HHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence            9999999999999999 999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             hHH-hhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          321 LMK-KHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       321 ~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      .|. +.|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++++++|+++..
T Consensus       614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~  693 (857)
T PLN03077        614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY  693 (857)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence            776 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCC
Q 047067          400 HILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDS  479 (566)
Q Consensus       400 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~p~~  479 (566)
                      |..|+++|+..|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||+.++|+..|+++..+|++.||.||+
T Consensus       694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~  773 (857)
T PLN03077        694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE  773 (857)
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccHHHHHhhhhhhhHHHHHHHhhhcCCCCCeEEEEccccccCCCchhhHhhhhhcCceEEEecCCccccccccc
Q 047067          480 SHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKFASKVVEREIIVRDTNRFHHFRDGF  559 (566)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~  559 (566)
                      ..++ +.++++|+..++.|||+||++|||+++++++||||+||||+|+|||+++|+||++.+|+|||||.+|||||+||+
T Consensus       774 ~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~  852 (857)
T PLN03077        774 SSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGE  852 (857)
T ss_pred             chhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCc
Confidence            9877 557888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 047067          560 CSCGD  564 (566)
Q Consensus       560 cs~~~  564 (566)
                      |||+|
T Consensus       853 csc~d  857 (857)
T PLN03077        853 CSCGD  857 (857)
T ss_pred             ccCCC
Confidence            99998

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=9.1e-73  Score=620.96  Aligned_cols=552  Identities=22%  Similarity=0.390  Sum_probs=487.7

Q ss_pred             CCCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067            1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIIL   80 (566)
Q Consensus         1 ac~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l   80 (566)
                      +|.+.+.++.|.++|+.+++.|..+++.++|+|+.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++
T Consensus        95 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~  174 (857)
T PLN03077         95 LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL  174 (857)
T ss_pred             HHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHH
Confidence            36677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh
Q 047067           81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE  160 (566)
Q Consensus        81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~  160 (566)
                      |++|...|+.||.+||+++|++|+..++.. .++++|..+.+.|+.||..++|+|+++|+++|++++|.++|++|+++|+
T Consensus       175 f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~  253 (857)
T PLN03077        175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLA-RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC  253 (857)
T ss_pred             HHHHHHcCCCCChhHHHHHHHHhCCccchh-hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCc
Confidence            999999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067          161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY  240 (566)
Q Consensus       161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  240 (566)
                      ++||+||.+|.+.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|
T Consensus       254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y  333 (857)
T PLN03077        254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY  333 (857)
T ss_pred             chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          241 AKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       241 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      +++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus       334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~  413 (857)
T PLN03077        334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE  413 (857)
T ss_pred             HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067          321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH  400 (566)
Q Consensus       321 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  400 (566)
                      .+.+.|+.|+..+|++|+++|+++|++++|.++|++|+ +||..+|++++.+|.++|+.++|..+|++|.+.-+.|..+|
T Consensus       414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~  492 (857)
T PLN03077        414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTL  492 (857)
T ss_pred             HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHH
Confidence            99999999999999999999999999999999999997 68999999999999999999999999999987555566788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeC-----C--------------EE---EEEEecCCCCcchHH
Q 047067          401 ILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETK-----N--------------AV---HMFVANDDAHPQRAM  458 (566)
Q Consensus       401 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~-----~--------------~~---~~f~~~~~~~~~~~~  458 (566)
                      ..++.+|++.|.++.+.+++..|.+.|+.++.......+.     +              .+   ...+.++..|++..+
T Consensus       493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~  572 (857)
T PLN03077        493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSM  572 (857)
T ss_pred             HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHH
Confidence            8888888888888888888888877777654321100000     0              00   011234456666666


Q ss_pred             HHHHHHHHHHHHHHcCcccCCCcccccccHHHHHhhhhh---hhHHHHHHHhhhcCCCCCeEEEEccccccCCCchhhHh
Q 047067          459 IHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQV---HSEKLALAFALISTPPGSTIHIKKNIRVCGDCHSAFKF  535 (566)
Q Consensus       459 ~~~~l~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  535 (566)
                      +.    +++++|.+.|+.||..++...+..+.+.+.+..   ..+.+...+|+.+...... ++++.+.++|+.++|.++
T Consensus       573 A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~  647 (857)
T PLN03077        573 AV----ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNF  647 (857)
T ss_pred             HH----HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHH
Confidence            55    678889999999999888776666666655422   3344555677766544433 688999999999999999


Q ss_pred             hhhhcCc------eEEEecCCccccccccc
Q 047067          536 ASKVVER------EIIVRDTNRFHHFRDGF  559 (566)
Q Consensus       536 ~~~~~~~------~~~~~~~~~~h~~~~g~  559 (566)
                      |.+|+.+      ..++..|+.+.+.+.|+
T Consensus       648 ~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e  677 (857)
T PLN03077        648 INKMPITPDPAVWGALLNACRIHRHVELGE  677 (857)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence            9999743      23344555544444443

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3.7e-62  Score=527.36  Aligned_cols=511  Identities=16%  Similarity=0.200  Sum_probs=254.5

Q ss_pred             CCCcHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHH
Q 047067            5 LKKLKEARIVHAHILGSAF-KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQ   83 (566)
Q Consensus         5 ~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~   83 (566)
                      .|++++|.++|+.|.+.|+ .++...++.++..|.+.|.+++|.++|+.|+.||..+||.||.+|++.|++++|.++|++
T Consensus       383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~  462 (1060)
T PLN03218        383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRL  462 (1060)
T ss_pred             CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            3445555555555555443 234444444455555555555555555555555555555555555555555555555555


Q ss_pred             HHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC
Q 047067           84 MLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES----KN  159 (566)
Q Consensus        84 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~  159 (566)
                      |.+.|+.||..+|+++|.+|++.|+.+ .+.++++.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+    ||
T Consensus       463 M~~~Gl~pD~~tynsLI~~y~k~G~vd-~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD  541 (1060)
T PLN03218        463 VQEAGLKADCKLYTTLISTCAKSGKVD-AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD  541 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCcCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence            555555555555555555555555555 5555555555555555555555555555555555555555555432    34


Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067          160 EVSWNALIAGHARKSEGEKALRTFSEMLR--EGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV  237 (566)
Q Consensus       160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  237 (566)
                      .++||.||.+|++.|++++|.++|++|..  .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI  621 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV  621 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence            45555555555555555555555555543  3445555555555555555555555555555555555555555555555


Q ss_pred             HHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067          238 DMYAKSGSIEDAEKVFNRLL----KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD  313 (566)
Q Consensus       238 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  313 (566)
                      .+|++.|++++|.++|++|.    .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+.|+.+|++.|+++
T Consensus       622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e  701 (1060)
T PLN03218        622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK  701 (1060)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence            55555555555555555552    33445555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047067          314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMHKNVELGAYAAERIF  390 (566)
Q Consensus       314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  390 (566)
                      +|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|   ++.||..+|++++.+|.+.|++++|.+++++|.
T Consensus       702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~  781 (1060)
T PLN03218        702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK  781 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            55555544444455555555555555555555555555555544   444555555555555555555555555555554


Q ss_pred             hcC-CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcch-HHHHHHHHHHHH
Q 047067          391 ELD-PHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQR-AMIHKKWREISE  468 (566)
Q Consensus       391 ~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~-~~~~~~l~~~~~  468 (566)
                      +.+ ..+..+|..|+.+|.  ++++++..+.+.+..                    |-.+   ++.. ..-......+++
T Consensus       782 k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~--------------------f~~g---~~~~~n~w~~~Al~lf~  836 (1060)
T PLN03218        782 EDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS--------------------FDSG---RPQIENKWTSWALMVYR  836 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh--------------------hhcc---ccccccchHHHHHHHHH
Confidence            432 112234444443332  123333322222211                    1000   0000 000122347889


Q ss_pred             HHHHcCcccCCCcccccccHHHHHhhhhhhhHHHHHHHhhhcCCCCCeE--EEEccccccCCC-chhhHhhhhhcCceEE
Q 047067          469 KIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTI--HIKKNIRVCGDC-HSAFKFASKVVEREII  545 (566)
Q Consensus       469 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~c~~~-~~~~~~~~~~~~~~~~  545 (566)
                      +|.+.|+.||..++...+....+.+.. .....+-..+++.+.+++...  .+++.+   +.. ++|..++.+|..+.|+
T Consensus       837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~  912 (1060)
T PLN03218        837 ETISAGTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVV  912 (1060)
T ss_pred             HHHHCCCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCC
Confidence            999999999977665444221121111 123344455666665554332  344543   322 5799999988877544

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2e-61  Score=521.73  Aligned_cols=430  Identities=19%  Similarity=0.251  Sum_probs=402.3

Q ss_pred             CCCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC----CCCcchHHHHHHHHHhCCCccH
Q 047067            1 KCTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP----VKDMVTWTALISGYSQNDQPEN   76 (566)
Q Consensus         1 ac~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~   76 (566)
                      +|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|.    .||..+||+||.+|++.|++++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            477889999999999999999999999999999999999999999999999998    6899999999999999999999


Q ss_pred             HHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067           77 AIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLK--YGYDWNVYVGSSLLDMYARFDQMDDAWFLFTA  154 (566)
Q Consensus        77 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~  154 (566)
                      |+++|++|.+.|+.||..||+.+|.+|++.|+.+ .+.++++.|.+  .|+.||..+|++||.+|+++|++++|.++|+.
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d-eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD-RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999 99999999987  67899999999999999999999999999999


Q ss_pred             CCC----CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH
Q 047067          155 LES----KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA  230 (566)
Q Consensus       155 ~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  230 (566)
                      |.+    ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+.
T Consensus       605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~  684 (1060)
T PLN03218        605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT  684 (1060)
T ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence            986    4679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhc----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067          231 FVGNTLVDMYAKSGSIEDAEKVFNRL----LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC  306 (566)
Q Consensus       231 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  306 (566)
                      .+|++||++|+++|++++|.++|++|    ..||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~  764 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS  764 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999    47899999999999999999999999999999999999999999999999


Q ss_pred             HccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh----hcC-------------------CHHHHHHHHHhC---CCC
Q 047067          307 SHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG----RAG-------------------LLDRALKFIREM---PIE  360 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~---~~~  360 (566)
                      ++.|++++|.++|..|.+.|+.||..+|++++.++.    +++                   ..++|..+|++|   ++.
T Consensus       765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~  844 (1060)
T PLN03218        765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL  844 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999999999997643    222                   246799999999   899


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 047067          361 PTAAVWGALLGACRMHKNVELGAYAAERIFE-LDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPA  433 (566)
Q Consensus       361 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  433 (566)
                      ||..+|+.++.++...+..+.+..+++.+.. -.+.+..+|..|++.+.+.  .++|..++++|.+.|+.|+..
T Consensus       845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            9999999999888888888888888877653 3455667999999988432  368999999999999988764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=9.9e-62  Score=521.39  Aligned_cols=489  Identities=20%  Similarity=0.249  Sum_probs=426.1

Q ss_pred             CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCC-CCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHH
Q 047067           55 VKDMVTWTALISGYSQNDQPENAIILFSQMLRLG-LKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS  133 (566)
Q Consensus        55 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~  133 (566)
                      .++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+ .+.++|..+.+.|+.||..++|
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~-~a~~l~~~m~~~g~~~~~~~~n  162 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIR-CVKAVYWHVESSGFEPDQYMMN  162 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHhCCCcchHHHH
Confidence            3467799999999999999999999999998864 7899999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067          134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ  213 (566)
Q Consensus       134 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~  213 (566)
                      .|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~  242 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA  242 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047067          214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA  293 (566)
Q Consensus       214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  293 (566)
                      +.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus       243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047067          294 PNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGAC  373 (566)
Q Consensus       294 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~  373 (566)
                      ||..||+.++.+|++.|++++|.+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|. +||..+||+||.+|
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y  401 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY  401 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999997 78999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-CCCccCCceeEEEeCCEEEEEEecCC
Q 047067          374 RMHKNVELGAYAAERIFELD-PHDSGPHILLANIYASAGRLNDAARARKMMKE-SGVKKEPACSWVETKNAVHMFVANDD  451 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~f~~~~~  451 (566)
                      .++|+.++|.++|++|.+.+ ..|..+|..++.+|++.|.+++|.++|+.|.+ .|+.|+.....        ..+.+..
T Consensus       402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li~~l~  473 (697)
T PLN03081        402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMIELLG  473 (697)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHHHHHH
Confidence            99999999999999999754 33457999999999999999999999999986 68877653211        1112223


Q ss_pred             CCcchHHHHHHHHHHHHHHHHcCcccCCCcccccccHHHHHhhhhhhhHHHHHHHhhhcCCCCCeEEEEccccccCCCch
Q 047067          452 AHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPPGSTIHIKKNIRVCGDCHS  531 (566)
Q Consensus       452 ~~~~~~~~~~~l~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  531 (566)
                      ..+..++       ..+.+++.++.||..++..-+..+.+.+.+..-.+.....+++.+...++.+.+++.+..+|+..+
T Consensus       474 r~G~~~e-------A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~  546 (697)
T PLN03081        474 REGLLDE-------AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE  546 (697)
T ss_pred             hcCCHHH-------HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence            3344444       445566789999977665444444443332211111222345544444555667888999999999


Q ss_pred             hhHhhhhhcCceEEE-------ecCCcccccccccc
Q 047067          532 AFKFASKVVEREIIV-------RDTNRFHHFRDGFC  560 (566)
Q Consensus       532 ~~~~~~~~~~~~~~~-------~~~~~~h~~~~g~c  560 (566)
                      |.+++.+|..+.+-.       --.+..|.|-.|-.
T Consensus       547 A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~  582 (697)
T PLN03081        547 AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR  582 (697)
T ss_pred             HHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence            999999999886532       12345677765543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=3.2e-26  Score=256.73  Aligned_cols=416  Identities=14%  Similarity=0.106  Sum_probs=341.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHH
Q 047067            3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAII   79 (566)
Q Consensus         3 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~   79 (566)
                      .+.|+.+.|..++..+.+.. ++++.+++.+...|...|++++|.+.|+++.   +.+...+..+...+...|++++|.+
T Consensus       442 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  520 (899)
T TIGR02917       442 LRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ  520 (899)
T ss_pred             HhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            35688899999999888753 5678889999999999999999999999764   3456678888889999999999999


Q ss_pred             HHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--
Q 047067           80 LFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES--  157 (566)
Q Consensus        80 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--  157 (566)
                      .|+++.+.. +.+..++..+...+...|+.+ .+...+..+.+.. +.+...+..++..|.+.|++++|..+++.+.+  
T Consensus       521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  597 (899)
T TIGR02917       521 RFEKVLTID-PKNLRAILALAGLYLRTGNEE-EAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA  597 (899)
T ss_pred             HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            999998754 345677888888888888888 8888888887764 45667788889999999999999999988764  


Q ss_pred             -CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHH
Q 047067          158 -KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL  236 (566)
Q Consensus       158 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  236 (566)
                       .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..+
T Consensus       598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  675 (899)
T TIGR02917       598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL  675 (899)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence             367789999999999999999999999988753 3456677788888889999999999999888765 5567788888


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067          237 VDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD  313 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  313 (566)
                      ...+...|++++|.++++.+..   .+...|..+...+...|++++|+..|+++...  .|+..++..+..++.+.|+++
T Consensus       676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~  753 (899)
T TIGR02917       676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTA  753 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHH
Confidence            9999999999999999988843   35677888888888999999999999998885  455577778888888899999


Q ss_pred             HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      +|.+.+..+.... +.+...+..+...|.+.|++++|.+.|+++ ...| +..+++.+...+...|+ .+|+..++++++
T Consensus       754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~  831 (899)
T TIGR02917       754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK  831 (899)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence            9998886655543 456778888888888999999999998887 3333 56788888888888888 778888888888


Q ss_pred             cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          392 LDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       392 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      +.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus       832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            8888888888888888888888888888888887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=1.1e-25  Score=252.36  Aligned_cols=414  Identities=13%  Similarity=0.027  Sum_probs=355.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHH
Q 047067            3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAII   79 (566)
Q Consensus         3 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~   79 (566)
                      ...|+.+.|...+..+.+... .+......++..|.+.|++++|.++++.+.   ++++.+|+.+...|...|++++|.+
T Consensus       408 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  486 (899)
T TIGR02917       408 LSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE  486 (899)
T ss_pred             HhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence            356888999999999988753 345566778889999999999999999876   3467789999999999999999999


Q ss_pred             HHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--
Q 047067           80 LFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES--  157 (566)
Q Consensus        80 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--  157 (566)
                      .|+++.+.. +.+...+..+...+...|+.+ .+...+..+.+.. +.+..++..+...|.+.|+.++|...|+++..  
T Consensus       487 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  563 (899)
T TIGR02917       487 AFEKALSIE-PDFFPAAANLARIDIQEGNPD-DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN  563 (899)
T ss_pred             HHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999998753 334556777788888899999 8999999988765 45778899999999999999999999998754  


Q ss_pred             -CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHH
Q 047067          158 -KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL  236 (566)
Q Consensus       158 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  236 (566)
                       .+...+..++..|.+.|++++|+.+++++.... +.+..+|..+..++...|++++|...+..+.+.. +.+...+..+
T Consensus       564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  641 (899)
T TIGR02917       564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL  641 (899)
T ss_pred             ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence             356788889999999999999999999998753 5577889999999999999999999999998875 5567788889


Q ss_pred             HHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067          237 VDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD  313 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  313 (566)
                      ..+|.+.|++++|...|+++.   ..+..+|..++..+...|++++|..+++.+.+.. +++...+..+...+...|+++
T Consensus       642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~  720 (899)
T TIGR02917       642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYP  720 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHH
Confidence            999999999999999999874   3367899999999999999999999999998874 456778888889999999999


Q ss_pred             HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      +|...+..+....  |+..++..+...+.+.|++++|.+.++++ ...| +...+..+...+...|+.++|...++++++
T Consensus       721 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  798 (899)
T TIGR02917       721 AAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK  798 (899)
T ss_pred             HHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999997766654  55577788999999999999999999888 3334 667888889999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          392 LDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       392 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ..|+++.++..++.+|...|+ ++|..+++++.+.
T Consensus       799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence            999999999999999999999 8899999998775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.96  E-value=1.3e-29  Score=201.74  Aligned_cols=106  Identities=58%  Similarity=1.021  Sum_probs=95.7

Q ss_pred             ceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccccHHHH--------HhhhhhhhHHHHH
Q 047067          433 ACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQER--------EAKLQVHSEKLAL  504 (566)
Q Consensus       433 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~  504 (566)
                      ++||+++    |.|++||.+||+.        ++..++...||.|++..+.++++++++        +..+..|||+||+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi   69 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI   69 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence            6899876    9999999999998        455677888999999998888777655        5678999999999


Q ss_pred             HHhhhcCCCCCeEEEEccc-cccCCCchhhHhhhhhcCceEEEecCCcccccc
Q 047067          505 AFALISTPPGSTIHIKKNI-RVCGDCHSAFKFASKVVEREIIVRDTNRFHHFR  556 (566)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  556 (566)
                      +||++++      +|+||+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus        70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk  116 (116)
T PF14432_consen   70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK  116 (116)
T ss_pred             Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence            9999998      788998 999999999999999999999999999999997

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=1.8e-20  Score=180.87  Aligned_cols=378  Identities=14%  Similarity=0.122  Sum_probs=236.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHH-
Q 047067           27 IAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-  102 (566)
Q Consensus        27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-  102 (566)
                      ..+|..+.+.+-..|++++|+.+++.+.   +..+..|..+..++...|+.+.|...|.+.++  +.|+.+...+-+.- 
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnL  193 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNL  193 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHH
Confidence            4456666666666777777777776554   22455677777777777777777777766665  34554433322222 


Q ss_pred             HccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---hHHHHHHHHHHHhCCChhHH
Q 047067          103 SGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKN---EVSWNALIAGHARKSEGEKA  179 (566)
Q Consensus       103 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A  179 (566)
                      .-..|.+. ++...+..+++.. +.-..+|+.|...+-..|++..|+..|++...-|   ..+|-.|...|-..+.+++|
T Consensus       194 lka~Grl~-ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  194 LKAEGRLE-EAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             HHhhcccc-hhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence            22234555 5555555555542 1224456666666666777777777777665433   34666666667777777777


Q ss_pred             HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 047067          180 LRTFSEMLREGFEPT-HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL-  257 (566)
Q Consensus       180 ~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-  257 (566)
                      +..|.+...  ..|+ ...+..+...|-.+|.+|.|...+++.++.. +.-...|+.|..++-..|++.+|.+.|++.. 
T Consensus       272 vs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  272 VSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR  348 (966)
T ss_pred             HHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence            776666654  2343 3455556666666777777777777766654 3345566677777777777777777776653 


Q ss_pred             --CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHH
Q 047067          258 --KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE-EAH  333 (566)
Q Consensus       258 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~  333 (566)
                        .....+.+.|...|...|.+++|..+|....+  +.|. ...++.|...|-++|++++|...+++..+  +.|+ ...
T Consensus       349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda  424 (966)
T KOG4626|consen  349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADA  424 (966)
T ss_pred             hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHH
Confidence              22455666677777777777777777777666  4554 44566666777777777777777755543  4554 346


Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067          334 YVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG  411 (566)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  411 (566)
                      |+.+...|-..|+.+.|.+.+.+. .+.|.. ...+.|...|...|++.+|+..++..+++.|+.+.+|-.++.+..-..
T Consensus       425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc  504 (966)
T KOG4626|consen  425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC  504 (966)
T ss_pred             HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence            666667777777777777777665 555643 466667777777777777777777777777777777766666665555


Q ss_pred             ChhH
Q 047067          412 RLND  415 (566)
Q Consensus       412 ~~~~  415 (566)
                      +|.+
T Consensus       505 dw~D  508 (966)
T KOG4626|consen  505 DWTD  508 (966)
T ss_pred             cccc
Confidence            5554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-20  Score=182.38  Aligned_cols=358  Identities=17%  Similarity=0.228  Sum_probs=308.4

Q ss_pred             cchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchh-HHHHH
Q 047067           58 MVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVY-VGSSL  135 (566)
Q Consensus        58 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~-~~~~l  135 (566)
                      ..+|..+...+-..|+.++|+.+|+.|++.  +|+ ...|..+-.++...|+.. .+-+.+...++.  .|+.. ..+.+
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~-~a~~~~~~alql--nP~l~ca~s~l  190 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLE-LAVQCFFEALQL--NPDLYCARSDL  190 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCc-ccHHHHHHHHhc--Ccchhhhhcch
Confidence            357888999999999999999999999985  564 568899999999999999 888888887775  45544 33456


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCh
Q 047067          136 LDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGSL  211 (566)
Q Consensus       136 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~  211 (566)
                      .......|++.+|...+.+..+.   =.+.|+.|...+..+|+...|++-|++...  +.|+ ...|..+...+...+.+
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~  268 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIF  268 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcc
Confidence            66667789999999998876553   356899999999999999999999999987  4565 36888999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047067          212 EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DVVSWNSMLTGCAQHGLGKATVRWFEKML  288 (566)
Q Consensus       212 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  288 (566)
                      +.|...+.++.... +....++..+...|...|.++-|+..|++..+  | -...||.|..++-..|+..+|...|.+.+
T Consensus       269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence            99999999887765 44566777788889999999999999999854  3 35799999999999999999999999999


Q ss_pred             HcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-H
Q 047067          289 RNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-A  364 (566)
Q Consensus       289 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~  364 (566)
                      .  +.|+ ..+.+.|...+...|.+++|..+|.....  +.|. ....+.|...|-..|++++|...+++. .++|+. .
T Consensus       348 ~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd  423 (966)
T KOG4626|consen  348 R--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD  423 (966)
T ss_pred             H--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence            8  4555 67889999999999999999999966554  3444 457888999999999999999999988 889976 6


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      .++.+.+.|...|+.+.|.+.+.++++.+|.-..++..|+.+|-..|+..+|+.-++...+..
T Consensus       424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999999999999999999999987743

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.89  E-value=1.5e-18  Score=196.39  Aligned_cols=413  Identities=11%  Similarity=0.043  Sum_probs=307.8

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC--CCc---chHHHH------------HH
Q 047067            4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPV--KDM---VTWTAL------------IS   66 (566)
Q Consensus         4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~---~~~~~l------------i~   66 (566)
                      ..|++++|...+..+++.. +.+..++..|...|.+.|++++|+..|++...  |+.   ..|..+            ..
T Consensus       281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~  359 (1157)
T PRK11447        281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD  359 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence            4577888888888888764 44677788888888888888888888887642  221   123222            23


Q ss_pred             HHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 047067           67 GYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMD  146 (566)
Q Consensus        67 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  146 (566)
                      .+.+.|++++|+..|++..+.. +.+...+..+-..+...|+.+ .+...+..+++.. +.+...+..+...|. .++.+
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~-eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~  435 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYA-AAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE  435 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence            4667888888888888888752 233455666677777888888 8888888887764 334555666777664 45678


Q ss_pred             HHHHHHHhCCCCC------------hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHH
Q 047067          147 DAWFLFTALESKN------------EVSWNALIAGHARKSEGEKALRTFSEMLREGFEP-THFSYSSVFTALASTGSLEQ  213 (566)
Q Consensus       147 ~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~  213 (566)
                      +|..+++.++...            ...+..+...+...|++++|++.|++..+.  .| +...+..+...+.+.|++++
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence            8888887765421            223455667788899999999999999875  34 45566778888999999999


Q ss_pred             HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----h---------hHHHHHHHHHHHcCCHHHH
Q 047067          214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD----V---------VSWNSMLTGCAQHGLGKAT  280 (566)
Q Consensus       214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A  280 (566)
                      |...++.+++.. +.+...+..+...+.+.|+.++|...++.+....    .         ..+..+...+...|+.++|
T Consensus       514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA  592 (1157)
T PRK11447        514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA  592 (1157)
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence            999999988765 3344455555666778899999999999875321    1         1123456678889999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 047067          281 VRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI  359 (566)
Q Consensus       281 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~  359 (566)
                      +.+++.     .+++...+..+...+.+.|++++|...|+...... +.+...+..++..|...|++++|.+.++.. ..
T Consensus       593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~  666 (1157)
T PRK11447        593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT  666 (1157)
T ss_pred             HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            999872     34456677788889999999999999997766653 345778889999999999999999999987 44


Q ss_pred             CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCChhHHHHHHHHHHh-CCCcc
Q 047067          360 EPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG------PHILLANIYASAGRLNDAARARKMMKE-SGVKK  430 (566)
Q Consensus       360 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~  430 (566)
                      .|+ ...+..+..++...|++++|.+.++++++..|+++.      .+..++.++...|++++|...+++... .|+.|
T Consensus       667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~  745 (1157)
T PRK11447        667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP  745 (1157)
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence            554 467777888899999999999999999988765543      555678999999999999999988853 44543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=5.4e-20  Score=185.66  Aligned_cols=295  Identities=15%  Similarity=0.098  Sum_probs=239.6

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccC
Q 047067          136 LDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT---HFSYSSVFTALASTG  209 (566)
Q Consensus       136 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~  209 (566)
                      ...+...|++++|...|.++.+.   +..+|..+...+.+.|++++|..+++.+...+..++   ..++..+...+...|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            34567788999999999988753   456788888999999999999999999887542222   245777888889999


Q ss_pred             ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHcCCHHHHH
Q 047067          210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD--------VVSWNSMLTGCAQHGLGKATV  281 (566)
Q Consensus       210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~  281 (566)
                      +++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+        ...|..+...+.+.|++++|+
T Consensus       122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  200 (389)
T PRK11788        122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR  200 (389)
T ss_pred             CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999998764 4567788899999999999999999999885322        124566778888999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 047067          282 RWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE  360 (566)
Q Consensus       282 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~  360 (566)
                      ..|+++.+.. +.+...+..+...+.+.|++++|.++++.+...+.......++.++.+|.+.|++++|...++++ ...
T Consensus       201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  279 (389)
T PRK11788        201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY  279 (389)
T ss_pred             HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999998853 22456777888999999999999999977766543333567888999999999999999999998 556


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCc
Q 047067          361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS---AGRLNDAARARKMMKESGVKKEPA  433 (566)
Q Consensus       361 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~  433 (566)
                      |+...+..+...+...|++++|..+++++++..|++. .+..+...+..   .|+.+++..++++|.++++.++|.
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            8777778889999999999999999999999999886 55555555543   569999999999999999999886

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.88  E-value=4.4e-18  Score=192.66  Aligned_cols=187  Identities=13%  Similarity=0.101  Sum_probs=130.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH---------
Q 047067          234 NTLVDMYAKSGSIEDAEKVFNRLLK--R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFL---------  300 (566)
Q Consensus       234 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~---------  300 (566)
                      ..+...+...|++++|++.|++..+  | +...+..+...|.+.|++++|+..|+++.+.  .|+ ...+.         
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~  542 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGS  542 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhC
Confidence            3455666666666666666666532  2 3445555666666666666666666666552  222 22222         


Q ss_pred             -----------------------------------HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC
Q 047067          301 -----------------------------------CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG  345 (566)
Q Consensus       301 -----------------------------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  345 (566)
                                                         .+...+...|+.++|..+++.     .+++...+..+...|.+.|
T Consensus       543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g  617 (1157)
T PRK11447        543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG  617 (1157)
T ss_pred             CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence                                               223344455566666655541     2345556677888889999


Q ss_pred             CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          346 LLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       346 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      ++++|.+.|++. ...| +...+..+...+...|+.++|++.++++++..|+++..+..++.++...|++++|.++++++
T Consensus       618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  697 (1157)
T PRK11447        618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL  697 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            999999999887 4455 46788888899999999999999999999988988888888999999999999999999988


Q ss_pred             HhCC
Q 047067          424 KESG  427 (566)
Q Consensus       424 ~~~g  427 (566)
                      ....
T Consensus       698 l~~~  701 (1157)
T PRK11447        698 IPQA  701 (1157)
T ss_pred             hhhC
Confidence            7654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.87  E-value=4.9e-18  Score=180.64  Aligned_cols=250  Identities=15%  Similarity=0.111  Sum_probs=205.4

Q ss_pred             CCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 047067          173 KSEGEKALRTFSEMLREG-FEP-THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE  250 (566)
Q Consensus       173 ~g~~~~A~~~~~~m~~~g-~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  250 (566)
                      .+++++|++.|++....+ ..| +...+..+...+...|++++|...++.+++.. +.....+..+..++...|++++|.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            468999999999998765 334 34567777778889999999999999998875 344667888899999999999999


Q ss_pred             HHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC
Q 047067          251 KVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHG  326 (566)
Q Consensus       251 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  326 (566)
                      ..|++..   ..+...|..+...+...|++++|+..|++.++.  .| +...+..+..++.+.|++++|...|+...+. 
T Consensus       386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-  462 (615)
T TIGR00990       386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-  462 (615)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            9999874   346789999999999999999999999999985  45 4667778888899999999999999766553 


Q ss_pred             CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067          327 VEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-------A-VWGALLGACRMHKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       327 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      .+.+...++.+...+...|++++|.+.|++. .+.|+.       . .++..+..+...|++++|...++++++++|++.
T Consensus       463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~  542 (615)
T TIGR00990       463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD  542 (615)
T ss_pred             CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            2445778889999999999999999999986 444421       1 122222334456999999999999999999999


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          398 GPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       398 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      .++..++.+|...|++++|.+.+++..+.
T Consensus       543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       543 IAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            89999999999999999999999998763

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=2.5e-18  Score=173.55  Aligned_cols=283  Identities=14%  Similarity=0.149  Sum_probs=201.8

Q ss_pred             HHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHH
Q 047067           37 YAKCGCLDEARKLFDEMPV---KDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFG  113 (566)
Q Consensus        37 ~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~  113 (566)
                      +...|++++|...|+++..   .+..+|..+...+.+.|++++|+.+++.+...+..++.                    
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------------------  104 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE--------------------  104 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH--------------------
Confidence            3445666666666665542   23334555555566666666666666555542110000                    


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047067          114 RQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREG  190 (566)
Q Consensus       114 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  190 (566)
                                   ....++..+...|.+.|++++|..+|+++.+   .+..+++.++..+.+.|++++|++.|+.+...+
T Consensus       105 -------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (389)
T PRK11788        105 -------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG  171 (389)
T ss_pred             -------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence                         0123567778888888888888888888865   356788888888888999999999998888765


Q ss_pred             CCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC--hh
Q 047067          191 FEPTH----FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--RD--VV  262 (566)
Q Consensus       191 ~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~  262 (566)
                      ..++.    ..+..+...+...|++++|...+.++.+.. +.+...+..+...|.+.|++++|.+.|+++.+  |+  ..
T Consensus       172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  250 (389)
T PRK11788        172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE  250 (389)
T ss_pred             CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence            33322    234556677788889999999988888765 34556777788888899999999999988853  32  34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG  342 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  342 (566)
                      +++.++.+|...|++++|...++++.+.  .|+...+..+...+.+.|++++|..++..+.+.  .|+...+..++..+.
T Consensus       251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~  326 (389)
T PRK11788        251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence            6788888899999999999999988884  566666788888888899999999988655543  577778887777666


Q ss_pred             h---cCCHHHHHHHHHhC
Q 047067          343 R---AGLLDRALKFIREM  357 (566)
Q Consensus       343 ~---~g~~~~A~~~~~~~  357 (566)
                      .   .|+.++|..+++++
T Consensus       327 ~~~~~g~~~~a~~~~~~~  344 (389)
T PRK11788        327 AEAEEGRAKESLLLLRDL  344 (389)
T ss_pred             hccCCccchhHHHHHHHH
Confidence            4   55888888888877

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.84  E-value=7.9e-17  Score=170.91  Aligned_cols=368  Identities=11%  Similarity=-0.011  Sum_probs=284.5

Q ss_pred             hcCChhHHHHHHccCCCC------CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHH
Q 047067           39 KCGCLDEARKLFDEMPVK------DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKF  112 (566)
Q Consensus        39 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~  112 (566)
                      +..+++.-.-.|..-++.      +..-...++..+.+.|++++|+.+++........+ ...+..+..+....|+.+ .
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~-~   94 (656)
T PRK15174         17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD-A   94 (656)
T ss_pred             hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH-H
Confidence            566777776677666532      22334556778889999999999999988763222 334445556666789999 8


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047067          113 GRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLRE  189 (566)
Q Consensus       113 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  189 (566)
                      +...++.+.+.. +.+...+..+...|.+.|++++|...|++...   .+...|..+...+...|++++|...++.+...
T Consensus        95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~  173 (656)
T PRK15174         95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE  173 (656)
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence            999999988874 44567788899999999999999999998765   36778999999999999999999999988765


Q ss_pred             CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 047067          190 GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNS  266 (566)
Q Consensus       190 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  266 (566)
                      .  |+.......+..+...|++++|...++.+++....++......+...+.+.|++++|+..|++...   .+...+..
T Consensus       174 ~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~  251 (656)
T PRK15174        174 V--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS  251 (656)
T ss_pred             C--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3  333222222345788899999999999988875444555556667889999999999999998743   36778888


Q ss_pred             HHHHHHHcCCHHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh
Q 047067          267 MLTGCAQHGLGKA----TVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL  341 (566)
Q Consensus       267 li~~~~~~g~~~~----A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  341 (566)
                      +...|.+.|++++    |+..|++..+.  .| +...+..+...+...|++++|...++...... +.+...+..+...|
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l  328 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARAL  328 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            9999999999986    89999999884  45 46688888999999999999999997766653 33455677788999


Q ss_pred             hhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067          342 GRAGLLDRALKFIREM-PIEPTAAVW-GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA  419 (566)
Q Consensus       342 ~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  419 (566)
                      .+.|++++|...++++ ...|+...+ ..+..++...|+.++|...++++++..|++.            ...+++|...
T Consensus       329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~  396 (656)
T PRK15174        329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLA  396 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHH
Confidence            9999999999999988 456765443 3456678999999999999999999999874            2344566666


Q ss_pred             HHHHHhC
Q 047067          420 RKMMKES  426 (566)
Q Consensus       420 ~~~m~~~  426 (566)
                      +....+.
T Consensus       397 ~~~~~~~  403 (656)
T PRK15174        397 LDGQISA  403 (656)
T ss_pred             HHHHHHh
Confidence            6666553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=1.3e-16  Score=172.85  Aligned_cols=395  Identities=9%  Similarity=-0.022  Sum_probs=292.9

Q ss_pred             CCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHH
Q 047067           24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPV---KDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSV   99 (566)
Q Consensus        24 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l   99 (566)
                      +.++....-.+......|+.++|++++.+...   .+...+..+...+.+.|++++|..+|++.++.  .|+ ...+..+
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   89 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL   89 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            34455556677788889999999999998763   33445888999999999999999999998875  344 4556667


Q ss_pred             HHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-ChHHHHHHHHHHHhCCCh
Q 047067          100 LKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES--K-NEVSWNALIAGHARKSEG  176 (566)
Q Consensus       100 l~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~  176 (566)
                      ...+...++.+ .+...++.+++.. +.+.. +..+..++...|+.++|...++++.+  | +...+..+...+...+..
T Consensus        90 a~~l~~~g~~~-eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049         90 ILTLADAGQYD-EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HHHHHHCCCHH-HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence            77788889999 8888888888773 44555 88889999999999999999998765  2 566777788888899999


Q ss_pred             hHHHHHHHHHHHCCCCCCHH------HHHHHHHHHh-----ccCCh---HHHHHHHHHHHHh-CCCCcHh-H-HHH---H
Q 047067          177 EKALRTFSEMLREGFEPTHF------SYSSVFTALA-----STGSL---EQGKWVHAHVIKS-GGQLVAF-V-GNT---L  236 (566)
Q Consensus       177 ~~A~~~~~~m~~~g~~pd~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---l  236 (566)
                      ++|++.++....   .|+..      ....++....     ..+.+   +.|.+.++.+++. ...|+.. . ...   .
T Consensus       167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~  243 (765)
T PRK10049        167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR  243 (765)
T ss_pred             HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence            999998876653   33320      1112222221     11223   6677788888764 2222221 1 111   1


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCC--hh--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcc
Q 047067          237 VDMYAKSGSIEDAEKVFNRLLKRD--VV--SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP---NQVTFLCVLTACSHA  309 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~  309 (566)
                      +.++...|++++|++.|+.+.+.+  ..  .--.+...|...|++++|+..|+++.+.....   .......+..++...
T Consensus       244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~  323 (765)
T PRK10049        244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES  323 (765)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence            234456799999999999986542  11  12225678999999999999999987643111   134566677788999


Q ss_pred             CCHHHHHHHHHhHHhhCC-----------Ccc---HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047067          310 GLLDEGQGYFALMKKHGV-----------EPE---EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGAC  373 (566)
Q Consensus       310 g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~  373 (566)
                      |++++|..++..+.....           .|+   ...+..+...+...|++++|.++++++ ...| +...+..+...+
T Consensus       324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~  403 (765)
T PRK10049        324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL  403 (765)
T ss_pred             ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999966554321           122   234566778899999999999999997 4455 567888999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ...|++++|++.++++++++|+++..+..++..+...|++++|..+++.+.+.
T Consensus       404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999864

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.82  E-value=2.1e-16  Score=171.25  Aligned_cols=390  Identities=10%  Similarity=0.033  Sum_probs=296.9

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC---CCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067            4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEM---PVKDMVTWTALISGYSQNDQPENAIIL   80 (566)
Q Consensus         4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l   80 (566)
                      ..|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.   .+.+...+..+...+...|++++|+..
T Consensus        27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~  105 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK  105 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3688899999999887643 455667889999999999999999999984   345677788899999999999999999


Q ss_pred             HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCh
Q 047067           81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNE  160 (566)
Q Consensus        81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~  160 (566)
                      +++..+.  .|+...+..+-.++...|+.. .+...+..+.+.. +.+..++..+..++.+.+..+.|.+.++.... ++
T Consensus       106 l~~~l~~--~P~~~~~~~la~~l~~~g~~~-~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p  180 (765)
T PRK10049        106 AKQLVSG--APDKANLLALAYVYKRAGRHW-DELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP  180 (765)
T ss_pred             HHHHHHh--CCCCHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence            9999876  454333777777888899999 9999999998875 34566667788899999999999999998776 21


Q ss_pred             H--------HHHHHHHHHH-----hCCCh---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHhccCChHHHHHHH
Q 047067          161 V--------SWNALIAGHA-----RKSEG---EKALRTFSEMLRE-GFEPTHF-SYS----SVFTALASTGSLEQGKWVH  218 (566)
Q Consensus       161 ~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~pd~~-t~~----~ll~~~~~~~~~~~a~~~~  218 (566)
                      .        ....++....     ..+++   ++|++.++.+... ...|+.. .+.    ..+.++...+++++|...|
T Consensus       181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~  260 (765)
T PRK10049        181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY  260 (765)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            1        1222233222     12234   7789999998864 2233321 111    1134556779999999999


Q ss_pred             HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047067          219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD-------VVSWNSMLTGCAQHGLGKATVRWFEKMLRNG  291 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  291 (566)
                      +.+.+.+.+........+..+|...|++++|+..|+++.+.+       ...+..+..++...|++++|+.+++++....
T Consensus       261 ~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~  340 (765)
T PRK10049        261 QRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS  340 (765)
T ss_pred             HHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence            999987632122222336789999999999999999985432       2346667778899999999999999998752


Q ss_pred             C-----------CCCH---HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          292 I-----------APNQ---VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       292 ~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      .           .|+.   ..+..+...+...|++++|+..++.+.... +.+...+..+...+...|++++|++.+++.
T Consensus       341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a  419 (765)
T PRK10049        341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKA  419 (765)
T ss_pred             CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            1           1332   244566778889999999999997666543 455778889999999999999999999988


Q ss_pred             -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067          358 -PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH  400 (566)
Q Consensus       358 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  400 (566)
                       .+.|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus       420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence             66776 45667777788999999999999999999999998543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=4.6e-16  Score=165.15  Aligned_cols=327  Identities=10%  Similarity=-0.040  Sum_probs=265.4

Q ss_pred             hHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHH
Q 047067           94 FTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGH  170 (566)
Q Consensus        94 ~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~  170 (566)
                      .-...++..+.+.|+.. .+..+....+...... ......++......|++++|...|+++..   .+...|..+...+
T Consensus        43 ~~~~~~~~~~~~~g~~~-~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l  120 (656)
T PRK15174         43 QNIILFAIACLRKDETD-VGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL  120 (656)
T ss_pred             cCHHHHHHHHHhcCCcc-hhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            34556677888899999 8998888888775433 44455556677789999999999999865   3667899999999


Q ss_pred             HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 047067          171 ARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE  250 (566)
Q Consensus       171 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  250 (566)
                      .+.|++++|+..|+++.... +.+...+..+..++...|++++|...+..+......+ ...+..+ ..+...|++++|.
T Consensus       121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~  197 (656)
T PRK15174        121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDH  197 (656)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHH
Confidence            99999999999999998752 3345677788899999999999999999887776433 3333333 3478899999999


Q ss_pred             HHHHhcCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHhH
Q 047067          251 KVFNRLLKR----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDE----GQGYFALM  322 (566)
Q Consensus       251 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~  322 (566)
                      ..++.+.+.    +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++    |...|+..
T Consensus       198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A  276 (656)
T PRK15174        198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA  276 (656)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence            999987543    33445556778899999999999999999853 2346677888899999999986    78888776


Q ss_pred             HhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067          323 KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH  400 (566)
Q Consensus       323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  400 (566)
                      .... +.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++++.+|+++..+
T Consensus       277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~  355 (656)
T PRK15174        277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN  355 (656)
T ss_pred             HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence            6543 345778899999999999999999999988 45564 46778888999999999999999999999999988777


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          401 ILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       401 ~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ..++.++...|++++|...+++..+..
T Consensus       356 ~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        356 RYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            778899999999999999999987754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.80  E-value=4.7e-15  Score=161.15  Aligned_cols=212  Identities=12%  Similarity=0.074  Sum_probs=155.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067          210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--RDVVSWNSMLTGCAQHGLGKATVRWFEKM  287 (566)
Q Consensus       210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m  287 (566)
                      +.++|...+.......  |+......+...+...|++++|...|+++..  ++...+..+...+.+.|+.++|...+++.
T Consensus       491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qA  568 (987)
T PRK09782        491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQA  568 (987)
T ss_pred             CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3344444444444332  3333223334444577888888888876642  34445666677778888888888888888


Q ss_pred             HHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HH
Q 047067          288 LRNGIAPNQ-VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-AA  364 (566)
Q Consensus       288 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~  364 (566)
                      ++..  |+. ..+..+.......|++++|...+....+.  .|+...|..+..++.+.|++++|...+++. ...|+ ..
T Consensus       569 L~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~  644 (987)
T PRK09782        569 EQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN  644 (987)
T ss_pred             HhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            7753  433 33333344445568999999998666654  456778888999999999999999999888 55674 46


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      .++.+..++...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus       645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            778888889999999999999999999999999999999999999999999999999998643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=3.5e-15  Score=158.87  Aligned_cols=418  Identities=11%  Similarity=0.012  Sum_probs=300.4

Q ss_pred             CCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHH---HHHHHhCCCccHHHH
Q 047067            3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTAL---ISGYSQNDQPENAII   79 (566)
Q Consensus         3 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~   79 (566)
                      .+.|+++.|...+..+++......+.++ .++..+...|+.++|+..+++...|+...+..+   ...|...|++++|++
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie  123 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA  123 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            3578889999999999887533223445 888888899999999999999887655444433   346778899999999


Q ss_pred             HHHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 047067           80 LFSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES-  157 (566)
Q Consensus        80 l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-  157 (566)
                      +|+++.+.  .|+ ...+..+...+...++.+ .+......+.+.  .|+...+..++..+...++..+|.+.++++.+ 
T Consensus       124 ly~kaL~~--dP~n~~~l~gLa~~y~~~~q~~-eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~  198 (822)
T PRK14574        124 LWQSSLKK--DPTNPDLISGMIMTQADAGRGG-VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL  198 (822)
T ss_pred             HHHHHHhh--CCCCHHHHHHHHHHHhhcCCHH-HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence            99999886  344 455566677778888888 777777777665  45555565666666556667669999988875 


Q ss_pred             -C-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----hccCC---hHHHHHHHHHH
Q 047067          158 -K-NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS------YSSVFTAL-----ASTGS---LEQGKWVHAHV  221 (566)
Q Consensus       158 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t------~~~ll~~~-----~~~~~---~~~a~~~~~~~  221 (566)
                       | +...+..+..+..+.|-...|+++..+-... +.|...-      ....++.-     .....   .+.|..-++.+
T Consensus       199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l  277 (822)
T PRK14574        199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL  277 (822)
T ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence             3 5667788888899999998888776653211 1111111      11111111     01112   23344444444


Q ss_pred             HHh-CC-CCcHhH-HHHH---HHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047067          222 IKS-GG-QLVAFV-GNTL---VDMYAKSGSIEDAEKVFNRLLKR----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG  291 (566)
Q Consensus       222 ~~~-~~-~~~~~~-~~~l---i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  291 (566)
                      ... +- ++.... ..+.   +-++.+.|++.++++.|+.+...    ...+--++..+|...+++++|+.+|+++....
T Consensus       278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~  357 (822)
T PRK14574        278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD  357 (822)
T ss_pred             HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence            442 11 222222 2233   44677889999999999999743    23455678899999999999999999997643


Q ss_pred             -----CCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-----------Ccc---HHHHHHHHHHhhhcCCHHHHHH
Q 047067          292 -----IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-----------EPE---EAHYVTFVDLLGRAGLLDRALK  352 (566)
Q Consensus       292 -----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~  352 (566)
                           ..++......|.-++..++++++|..+++.+.+...           .|+   ...+..++..+...|++.+|++
T Consensus       358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~  437 (822)
T PRK14574        358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK  437 (822)
T ss_pred             ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence                 122344457889999999999999999966665211           122   2244556788899999999999


Q ss_pred             HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          353 FIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       353 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      .++++ ...| |...+..+...+...|++.+|++.++.+..++|++..+...++..+...|+|.+|..+.+...+.-
T Consensus       438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~  514 (822)
T PRK14574        438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS  514 (822)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence            99998 4455 777888999999999999999999999999999999999999999999999999999998887643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.79  E-value=3.7e-15  Score=161.88  Aligned_cols=263  Identities=8%  Similarity=-0.009  Sum_probs=214.2

Q ss_pred             ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067          159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD  238 (566)
Q Consensus       159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  238 (566)
                      +...|..+..++.. +++++|+..|.+....  .|+......+..++...|++++|...++.+...  +|+...+..+..
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~  550 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN  550 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence            45567777777766 7888999988887764  477665555556667899999999999998665  344445567788


Q ss_pred             HHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047067          239 MYAKSGSIEDAEKVFNRLLKRDVVSWNSM---LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEG  315 (566)
Q Consensus       239 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  315 (566)
                      ++.+.|++++|...|+...+.++..++..   .......|++++|+..|++..+  ..|+...+..+..++.+.|++++|
T Consensus       551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA  628 (987)
T PRK09782        551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAA  628 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHH
Confidence            89999999999999998865544333333   3334455999999999999998  567888899999999999999999


Q ss_pred             HHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067          316 QGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELD  393 (566)
Q Consensus       316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  393 (566)
                      ...+....... +.+...++.+...+...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++++
T Consensus       629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            99997766654 345677888889999999999999999988 5566 56789999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067          394 PHDSGPHILLANIYASAGRLNDAARARKMMKESGVK  429 (566)
Q Consensus       394 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~  429 (566)
                      |++..+....+++.....+++.|.+-+++....++.
T Consensus       708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        708 DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            999999999999999999999999988887765543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.75  E-value=3.9e-14  Score=150.88  Aligned_cols=386  Identities=10%  Similarity=-0.038  Sum_probs=256.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHHHHHHccCC
Q 047067           31 NTILNAYAKCGCLDEARKLFDEMP--VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSVLKASGAGA  107 (566)
Q Consensus        31 ~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~  107 (566)
                      ..+...|.+.|++++|.+.|++..  .|+...|..+..+|.+.|++++|++.+.+.++.  .|+ ...+..+-.++...|
T Consensus       131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg  208 (615)
T TIGR00990       131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLG  208 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcC
Confidence            345566777788888888887654  456667777777788888888888888777764  343 446666667777777


Q ss_pred             CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 047067          108 TDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML  187 (566)
Q Consensus       108 ~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  187 (566)
                      +.+ .+..-+..+...+-..+... ..++.-+.+......+...++.-+. +..++..+.. |...........-+..-.
T Consensus       209 ~~~-eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       209 KYA-DALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             CHH-HHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence            777 56555544443321111111 1111111111112333444433222 2223332222 222222222222222111


Q ss_pred             HCCCCCCH-HHHHHHHHH---HhccCChHHHHHHHHHHHHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 047067          188 REGFEPTH-FSYSSVFTA---LASTGSLEQGKWVHAHVIKSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R  259 (566)
Q Consensus       188 ~~g~~pd~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~  259 (566)
                      .  ..|+. ..+..+...   ....+.+++|...++.+++.+  .+.....++.+...|...|++++|+..|++..+  |
T Consensus       285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P  362 (615)
T TIGR00990       285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP  362 (615)
T ss_pred             c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            1  11111 111111111   123467899999999998875  234556788889999999999999999999853  3


Q ss_pred             -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHH
Q 047067          260 -DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFV  338 (566)
Q Consensus       260 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  338 (566)
                       +..+|..+...+...|++++|+..|++.++.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+.
T Consensus       363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la  440 (615)
T TIGR00990       363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG  440 (615)
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence             45688889999999999999999999998852 2357788899999999999999999997766643 33566778889


Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH-------HHHHHHh
Q 047067          339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHIL-------LANIYAS  409 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~  409 (566)
                      ..+.+.|++++|...|++. ...| +...|+.+...+...|++++|+..+++++++.|.+...+..       ....|..
T Consensus       441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~  520 (615)
T TIGR00990       441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW  520 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999987 4455 46788999999999999999999999999999875443322       1223344


Q ss_pred             cCChhHHHHHHHHHHhC
Q 047067          410 AGRLNDAARARKMMKES  426 (566)
Q Consensus       410 ~g~~~~a~~~~~~m~~~  426 (566)
                      .|++++|.+++++..+.
T Consensus       521 ~~~~~eA~~~~~kAl~l  537 (615)
T TIGR00990       521 KQDFIEAENLCEKALII  537 (615)
T ss_pred             hhhHHHHHHHHHHHHhc
Confidence            79999999999998764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.71  E-value=4.6e-13  Score=142.82  Aligned_cols=385  Identities=14%  Similarity=0.063  Sum_probs=279.4

Q ss_pred             HHHHHhcCChhHHHHHHccCCCCCcc---hHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHH---HHHHHHHccCC
Q 047067           34 LNAYAKCGCLDEARKLFDEMPVKDMV---TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTL---SSVLKASGAGA  107 (566)
Q Consensus        34 i~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~~  107 (566)
                      +-...+.|+++.|+..|++..+.++.   ....++..+...|+.++|+..+++..    .|+...+   ..+...+...+
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g  116 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK  116 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence            44556899999999999998744433   23488899999999999999999988    3433333   33345677889


Q ss_pred             CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHh--CCChhHHHHHHHH
Q 047067          108 TDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHAR--KSEGEKALRTFSE  185 (566)
Q Consensus       108 ~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~  185 (566)
                      +.+ .|..+++.+.+.. +.++.++..++..|...++.++|++.++++...+......+..+|..  .++..+|++.+++
T Consensus       117 dyd-~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek  194 (822)
T PRK14574        117 RWD-QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE  194 (822)
T ss_pred             CHH-HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            999 9999999999875 34467777889999999999999999999887544332224444444  5666669999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHh------HHHHHHHHH---H--hcC---CHHHHHH
Q 047067          186 MLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAF------VGNTLVDMY---A--KSG---SIEDAEK  251 (566)
Q Consensus       186 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~---~--~~g---~~~~A~~  251 (566)
                      +.+.. +-+...+.....+..+.|....|.++..+-... +.+...      ....++..-   .  ...   -.+.|+.
T Consensus       195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala  272 (822)
T PRK14574        195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA  272 (822)
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence            99864 335666778888899999888887766542211 000000      000111000   0  111   2344444


Q ss_pred             HHHhcCC-----CCh-h----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067          252 VFNRLLK-----RDV-V----SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL  321 (566)
Q Consensus       252 ~~~~~~~-----~~~-~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  321 (566)
                      -++.+..     |.. .    ..--.+.++...|+..++++.|+.|...|.+....+-..+..+|...+.+++|..++..
T Consensus       273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~  352 (822)
T PRK14574        273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS  352 (822)
T ss_pred             HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            4444432     211 1    22235677889999999999999999988765556888999999999999999999966


Q ss_pred             HHhhC-----CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----C----------CCC--CHH-HHHHHHHHHHhcCCH
Q 047067          322 MKKHG-----VEPEEAHYVTFVDLLGRAGLLDRALKFIREM----P----------IEP--TAA-VWGALLGACRMHKNV  379 (566)
Q Consensus       322 ~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~----------~~p--~~~-~~~~ll~~~~~~g~~  379 (566)
                      +....     .+++......|.-+|...+++++|..+++++    |          -.|  |-. ....++..+...|++
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl  432 (822)
T PRK14574        353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL  432 (822)
T ss_pred             HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence            54432     2334555678899999999999999999988    2          012  222 334456778899999


Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          380 ELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       380 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      .+|++.+++++...|.|+.....+++++...|...+|.+.++.....
T Consensus       433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l  479 (822)
T PRK14574        433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL  479 (822)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999777654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=1.2e-12  Score=122.19  Aligned_cols=391  Identities=15%  Similarity=0.124  Sum_probs=225.3

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCCh-------------------------hHHHHHHccCCCC
Q 047067            4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNA--YAKCGCL-------------------------DEARKLFDEMPVK   56 (566)
Q Consensus         4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~--~~~~g~~-------------------------~~A~~~f~~~~~~   56 (566)
                      ..|.++++--++++|...|.+.++.+--.|+..  |....++                         +-|. ++-+..++
T Consensus       127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~~PK  205 (625)
T KOG4422|consen  127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFETLPK  205 (625)
T ss_pred             hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhhcCC
Confidence            457788888999999999988777776666543  2222111                         1133 33333455


Q ss_pred             CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047067           57 DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLL  136 (566)
Q Consensus        57 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li  136 (566)
                      +..+|..||.|+++-...+.|.++|++-.+...+.+..+||.+|.+..-.     .++.+...|+...+.||..|+|+++
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-----~~K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-----VGKKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence            67899999999999999999999999998888899999999999876433     5678899999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHH----HhCC----CCChHHHHHHHHHHHhCCChhH-HHHHHHHHHHC----CCCC----CHHHHH
Q 047067          137 DMYARFDQMDDAWFLF----TALE----SKNEVSWNALIAGHARKSEGEK-ALRTFSEMLRE----GFEP----THFSYS  199 (566)
Q Consensus       137 ~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~p----d~~t~~  199 (566)
                      ...++.|+++.|++.+    .+|+    +|...+|..+|..+.+.+++.+ |..+..+....    -++|    |...|.
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~  360 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ  360 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence            9999999988876543    2232    2455555555555555555533 22233332221    1222    334455


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhC----CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 047067          200 SVFTALASTGSLEQGKWVHAHVIKSG----GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHG  275 (566)
Q Consensus       200 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g  275 (566)
                      ..++.|.+..+.+.|.+++.-+....    +.++..                            ...-|..+....++..
T Consensus       361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------------~~fYyr~~~~licq~e  412 (625)
T KOG4422|consen  361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------------RNFYYRKFFDLICQME  412 (625)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------HHHHHHHHHHHHHHHH
Confidence            55555555555555555554432211    111100                            1122333444444445


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC-CH-------
Q 047067          276 LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG-LL-------  347 (566)
Q Consensus       276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~-------  347 (566)
                      ..+.-+.+|+.|.-.-.-|+..+...+++|....+.++-..+++..+...|.........-+...+++.. ..       
T Consensus       413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q  492 (625)
T KOG4422|consen  413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ  492 (625)
T ss_pred             HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence            5555555555555544555555555555555555555555555544444443333222222223333222 00       


Q ss_pred             -HH-----HHHHH-------HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCch--HHHHHHHHH
Q 047067          348 -DR-----ALKFI-------REM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELD---PHDSGP--HILLANIYA  408 (566)
Q Consensus       348 -~~-----A~~~~-------~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~--~~~l~~~~~  408 (566)
                       ..     |..++       .++ ..+......+..+..+.+.|..++|.+++..++...   |..+..  ..-+.+.-.
T Consensus       493 l~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~  572 (625)
T KOG4422|consen  493 LQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK  572 (625)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence             00     11111       122 122344455555666677788888888887776432   433321  223444444


Q ss_pred             hcCChhHHHHHHHHHHhCCC
Q 047067          409 SAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~~~g~  428 (566)
                      .......|..+++.|...+.
T Consensus       573 ~~~spsqA~~~lQ~a~~~n~  592 (625)
T KOG4422|consen  573 VSNSPSQAIEVLQLASAFNL  592 (625)
T ss_pred             hcCCHHHHHHHHHHHHHcCc
Confidence            55667777777777766544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.62  E-value=2.3e-12  Score=132.07  Aligned_cols=413  Identities=12%  Similarity=0.080  Sum_probs=232.6

Q ss_pred             cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCC------cchHHHHHHHHHhCCCccHHHHHH
Q 047067            8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKD------MVTWTALISGYSQNDQPENAIILF   81 (566)
Q Consensus         8 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~   81 (566)
                      +..|.+.+...-+.. ..+|.+.+.|.+.|.-.|++..+..+.+.+...+      ..+|-.+.++|-..|++++|...|
T Consensus       252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY  330 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY  330 (1018)
T ss_pred             HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            344445554444433 4566677777777777777777776666554222      234666777777777777777777


Q ss_pred             HHHHHCCCCCChhH--HHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----CHHHHHHHHHhC
Q 047067           82 SQMLRLGLKPNQFT--LSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD----QMDDAWFLFTAL  155 (566)
Q Consensus        82 ~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~f~~~  155 (566)
                      .+-.+.  .||.++  +..+-..+...|++. .+...|+.+.+.. +.+..+...|...|+..+    ..+.|..+..+.
T Consensus       331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle-~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~  406 (1018)
T KOG2002|consen  331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLE-ESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV  406 (1018)
T ss_pred             HHHHcc--CCCCccccccchhHHHHHhchHH-HHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence            655543  344433  334555566667776 6666666666552 344555555555665553    344555555544


Q ss_pred             CCC---ChHHHHHHHHHHHhCCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---C
Q 047067          156 ESK---NEVSWNALIAGHARKSEGEKALRTFSEM----LREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS---G  225 (566)
Q Consensus       156 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~  225 (566)
                      .++   |..+|-.+...+-+..-+.. +..|...    ...+-.+.....+.+.......|+++.|...|......   .
T Consensus       407 ~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~  485 (1018)
T KOG2002|consen  407 LEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV  485 (1018)
T ss_pred             HhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence            432   34444444444433322222 4444332    22333344455555555555555555555555544433   1


Q ss_pred             CCCcH------h-HHH--------------------------HHHHHHHhc-------CCHHHHHHHHHhcC---CCChh
Q 047067          226 GQLVA------F-VGN--------------------------TLVDMYAKS-------GSIEDAEKVFNRLL---KRDVV  262 (566)
Q Consensus       226 ~~~~~------~-~~~--------------------------~li~~~~~~-------g~~~~A~~~~~~~~---~~~~~  262 (566)
                      ..++.      . -||                          ..|++|.+.       +...+|...++...   ..|+.
T Consensus       486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~  565 (1018)
T KOG2002|consen  486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN  565 (1018)
T ss_pred             cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence            11111      0 111                          122222222       23334444444432   23455


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHhHHhhCCCc
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQVTFLCVLTACSH------------AGLLDEGQGYFALMKKHGVEP  329 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~p  329 (566)
                      .|.-+...+.....+..|.+-|....+.- ..+|..+...|.+.|.+            .+..+.|.++|..+.+.. +.
T Consensus       566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk  644 (1018)
T KOG2002|consen  566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK  644 (1018)
T ss_pred             HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence            56555556666666666666555544321 23566666666665543            234566777776555433 34


Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchHHHHHH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELD--PHDSGPHILLAN  405 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~  405 (566)
                      |...-|-+.-.++..|++.+|.++|.+.  ...-+..+|-.+..+|...|++-.|+++|+..+...  .+++.+...|+.
T Consensus       645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar  724 (1018)
T KOG2002|consen  645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR  724 (1018)
T ss_pred             hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence            5556666777788888888888888877  212244678888888888888888888888887643  445667778888


Q ss_pred             HHHhcCChhHHHHHHHHHHhCC
Q 047067          406 IYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       406 ~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ++.+.|++.+|.+.........
T Consensus       725 a~y~~~~~~eak~~ll~a~~~~  746 (1018)
T KOG2002|consen  725 AWYEAGKLQEAKEALLKARHLA  746 (1018)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhC
Confidence            8888888888888777776543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.61  E-value=3.3e-15  Score=143.02  Aligned_cols=257  Identities=18%  Similarity=0.134  Sum_probs=110.0

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 047067          166 LIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSS-VFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG  244 (566)
Q Consensus       166 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  244 (566)
                      +...+.+.|++++|++++++......+|+...|.. +...+...++.+.|...++++...+. .+...+..++.. ...+
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence            34556667777777777755443322344444443 33344556777777777777776653 255556666666 6788


Q ss_pred             CHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067          245 SIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQVTFLCVLTACSHAGLLDEGQGYFAL  321 (566)
Q Consensus       245 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  321 (566)
                      ++++|.+++...-  .++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|...++.
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8888888887663  3466777888888899999999999999877543 345677788888888999999999999977


Q ss_pred             HHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          322 MKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       322 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      ..+.. +.+......++..+...|+.+++.++++..  ....|...|..+..++...|+.++|+..++++.+..|+|+..
T Consensus       172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~  250 (280)
T PF13429_consen  172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW  250 (280)
T ss_dssp             HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred             HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence            66653 224667888999999999999988887766  113455678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          400 HILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       400 ~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ...++.++...|+.++|.+++.+..+
T Consensus       251 ~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  251 LLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccc
Confidence            99999999999999999999887643

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.60  E-value=1e-12  Score=123.31  Aligned_cols=204  Identities=11%  Similarity=0.071  Sum_probs=165.7

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHHcCCHHHHHHH
Q 047067          207 STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL---LKRDVVSWNSMLTGCAQHGLGKATVRW  283 (566)
Q Consensus       207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~  283 (566)
                      ..|+++.|...+.+.+...-.-....|| +.-.+-..|++++|++.|-++   ...++...-.+...|-...+..+|+++
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            4578888888888887765333334444 344577789999999999876   356777777888889999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 047067          284 FEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT  362 (566)
Q Consensus       284 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~  362 (566)
                      +.+.... ++.|+..+.-|...|-+.|+-.+|.+.+-.-- +-++.+.++..-|..-|....-+++|..+|++. -++|+
T Consensus       581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~  658 (840)
T KOG2003|consen  581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN  658 (840)
T ss_pred             HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence            8877663 44467788889999999999999999883322 235678888888888899999999999999998 67899


Q ss_pred             HHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 047067          363 AAVWGALLGA-CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL  413 (566)
Q Consensus       363 ~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  413 (566)
                      ..-|..++.. +++.|+++.|..+++......|.+......|..++...|..
T Consensus       659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            9999988866 46789999999999999999999999999999999888754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.58  E-value=2.1e-11  Score=124.27  Aligned_cols=328  Identities=13%  Similarity=0.148  Sum_probs=237.5

Q ss_pred             cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCChHHHHHHHHHHHhCCChhHHHH
Q 047067          105 AGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTAL---ESKNEVSWNALIAGHARKSEGEKALR  181 (566)
Q Consensus       105 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~  181 (566)
                      ..|+.+ .|..++..+++.. +.....|..|...|-..|+++++...+--.   ...|...|..+..-..+.|.+++|.-
T Consensus       151 arg~~e-eA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  151 ARGDLE-EAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             HhCCHH-HHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence            337777 8888888888764 455677888888888888888887766443   34567788888888888888888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHH----HHHHHHhcCCHHHHHHHHHhcC
Q 047067          182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNT----LVDMYAKSGSIEDAEKVFNRLL  257 (566)
Q Consensus       182 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~  257 (566)
                      .|.+..+.. +++...+.--...|-+.|+...|..-+.++.....+.|..-...    .+..|...++-+.|.+.++...
T Consensus       229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~  307 (895)
T KOG2076|consen  229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL  307 (895)
T ss_pred             HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            888888764 44555555666777888888888888888887754333333332    3455666677788888877764


Q ss_pred             C-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHHHHHHH
Q 047067          258 K-----RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP---------------------------NQVTFLCVLTA  305 (566)
Q Consensus       258 ~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~~~t~~~ll~a  305 (566)
                      .     -+...+|.++..|.+..+++.|......+......|                           +... ..+.-+
T Consensus       308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic  386 (895)
T KOG2076|consen  308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC  386 (895)
T ss_pred             hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence            3     144577888888888888888888888777621222                           2111 112223


Q ss_pred             HHccCCHHHHHHHHHhHHhhC--CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHH
Q 047067          306 CSHAGLLDEGQGYFALMKKHG--VEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMHKNVE  380 (566)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~  380 (566)
                      ..+....+....+.....+..  ..-+...|.-+.++|...|++.+|..+|..+   +..-+...|--+..+|...|..+
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            334444444444444444445  3345678889999999999999999999998   22235679999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 047067          381 LGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSW  436 (566)
Q Consensus       381 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~  436 (566)
                      +|.+.+++++.+.|++..+-..|+..|.+.|+.++|.+++..+..-+-...+++.|
T Consensus       467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~  522 (895)
T KOG2076|consen  467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW  522 (895)
T ss_pred             HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence            99999999999999999999999999999999999999999887333222345555

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.55  E-value=1.3e-11  Score=123.79  Aligned_cols=275  Identities=11%  Similarity=0.068  Sum_probs=210.5

Q ss_pred             cCCHHHHHHHHHhCCCC--ChH-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHH
Q 047067          142 FDQMDDAWFLFTALESK--NEV-SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYS--SVFTALASTGSLEQGKW  216 (566)
Q Consensus       142 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~  216 (566)
                      .|+++.|++.+...++.  ++. .|-....+..+.|+++.|.+.|.++.+.  .|+.....  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            69999999998876653  233 3433344558999999999999999774  56654433  33567788999999999


Q ss_pred             HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hHHHHHHHHHHHcCCHHHHHHHHH
Q 047067          217 VHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV-----------VSWNSMLTGCAQHGLGKATVRWFE  285 (566)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~  285 (566)
                      .++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+...           .+|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999998887 66678888999999999999999999998864321           234444444445556667777777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-H
Q 047067          286 KMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-A  363 (566)
Q Consensus       286 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~  363 (566)
                      .+.+. .+.+......+..++...|+.++|..++....+.  +|+....  ++......++.+++.+.+++. ...|+ .
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~  328 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP  328 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence            76543 3457778888999999999999999999666553  4444322  233334559999999999887 44664 4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .....+...|...+++++|.+.|+++++..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus       329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5677888899999999999999999999999875 678999999999999999999987754

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=9.9e-11  Score=109.60  Aligned_cols=351  Identities=13%  Similarity=0.136  Sum_probs=252.0

Q ss_pred             CCCChhHHHHHHHHHHhcCChhHHHHHHccCC----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHH
Q 047067           23 FKNDIAMQNTILNAYAKCGCLDEARKLFDEMP----VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSS   98 (566)
Q Consensus        23 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~   98 (566)
                      .+-.+.++..||...+|--..+.|.+++.+-.    +-+..++|.+|.+-.-..    ..++..+|....+.||..|||+
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa  278 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA  278 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence            35578899999999999999999999999876    337788999997654332    2789999999999999999999


Q ss_pred             HHHHHccCCCch---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhCCC------------CChHH
Q 047067           99 VLKASGAGATDD---KFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDD-AWFLFTALES------------KNEVS  162 (566)
Q Consensus        99 ll~a~~~~~~~~---~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~f~~~~~------------~~~~~  162 (566)
                      +|+..++.|++.   +.+.++...|.+.|+.|...+|..+|..+.+.++..+ |..+...+..            .|..-
T Consensus       279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F  358 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF  358 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence            999999999766   3566888999999999999999999999999988754 4444433321            25556


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHH
Q 047067          163 WNALIAGHARKSEGEKALRTFSEMLREG----FEPTH---FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNT  235 (566)
Q Consensus       163 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~pd~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  235 (566)
                      +..-++.|.+..+.+-|.++-.-.....    +.|+.   +-|..+..+.++....+.-...|+.|+-.-.-|+..+...
T Consensus       359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~  438 (625)
T KOG4422|consen  359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH  438 (625)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence            7777788888888888887755443221    33432   3466777788888899999999999988877888888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCH
Q 047067          236 LVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV---TFLCVLTACSHAGLL  312 (566)
Q Consensus       236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~  312 (566)
                      ++.+..-.|.++-..+++..+..-+            ..-+.+--.+++..|......|+..   -+.....-|.  -++
T Consensus       439 ~lrA~~v~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~  504 (625)
T KOG4422|consen  439 LLRALDVANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA--ADI  504 (625)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHH
Confidence            8888888888887777776553221            1112233344555555544445433   3333333332  233


Q ss_pred             HHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047067          313 DEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPTAAVWGALLGACRMHKNVELGAY  384 (566)
Q Consensus       313 ~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~  384 (566)
                      .++.+.- ..+.+..+  .....++..-.+.|.|..++|.+++.-.       +..|......-++.+..+.++...|..
T Consensus       505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~  582 (625)
T KOG4422|consen  505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE  582 (625)
T ss_pred             HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence            4444333 44444444  4456778888899999999999988654       445555556677778888888889998


Q ss_pred             HHHHHHhcC
Q 047067          385 AAERIFELD  393 (566)
Q Consensus       385 ~~~~~~~~~  393 (566)
                      +++-+.+.+
T Consensus       583 ~lQ~a~~~n  591 (625)
T KOG4422|consen  583 VLQLASAFN  591 (625)
T ss_pred             HHHHHHHcC
Confidence            888887654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.53  E-value=1e-10  Score=120.20  Aligned_cols=424  Identities=16%  Similarity=0.148  Sum_probs=299.1

Q ss_pred             cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC------CCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067            8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP------VKDMVTWTALISGYSQNDQPENAIILF   81 (566)
Q Consensus         8 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~   81 (566)
                      ++.|-+-|..+++.. ++|+...--=.......|++..|+.+|....      .+|+.  -.+-..+.+.|+.+.|+..|
T Consensus       146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence            477888888888765 3333222111223334689999999999843      23332  12335677899999999999


Q ss_pred             HHHHHCCCCCChhHHHHHHHHHc-cCCCch--HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 047067           82 SQMLRLGLKPNQFTLSSVLKASG-AGATDD--KFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK  158 (566)
Q Consensus        82 ~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~--~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~  158 (566)
                      .+.++.  .|+.+.-...|..+. ...+.+  ..+...+....+. -..++.+.+.|.+.|.-.|++..++.+...+...
T Consensus       223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~  299 (1018)
T KOG2002|consen  223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKN  299 (1018)
T ss_pred             HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence            998874  453332222222111 112222  1333333333332 2457788899999999999999999988877654


Q ss_pred             C------hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH
Q 047067          159 N------EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTH--FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA  230 (566)
Q Consensus       159 ~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  230 (566)
                      +      ..+|-.+..+|...|++++|...|.+..+.  .||.  ..+..+...+...|+++.+...|+.+.+.. +.+.
T Consensus       300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~  376 (1018)
T KOG2002|consen  300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY  376 (1018)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence            2      336888999999999999999999887764  4554  344567788999999999999999998875 6667


Q ss_pred             hHHHHHHHHHHhcC----CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCCHHHH
Q 047067          231 FVGNTLVDMYAKSG----SIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKML----RNGIAPNQVTF  299 (566)
Q Consensus       231 ~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~  299 (566)
                      .+...|...|+..+    ..+.|..+..+...+   |...|-.+...+-+.. ...++..|....    ..+-.+.....
T Consensus       377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~L  455 (1018)
T KOG2002|consen  377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVL  455 (1018)
T ss_pred             HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            77778888888775    567777777776544   5667777766665544 445577776544    45556778889


Q ss_pred             HHHHHHHHccCCHHHHHHHHHhHHhh---CCCccH------HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-HHHH
Q 047067          300 LCVLTACSHAGLLDEGQGYFALMKKH---GVEPEE------AHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAA-VWGA  368 (566)
Q Consensus       300 ~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~  368 (566)
                      +.+.......|+++.|...|......   ...++.      .+-..+...+-..++.+.|.+.|..+ ...|.-+ .|-.
T Consensus       456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylR  535 (1018)
T KOG2002|consen  456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLR  535 (1018)
T ss_pred             HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHH
Confidence            99999999999999999999554433   122333      22334667777888999999999988 4456553 4545


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCC
Q 047067          369 LLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKN  441 (566)
Q Consensus       369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~  441 (566)
                      ++-.....++..+|...++.+++.+..+|.++..+++.|.+...|.-|.+-|....++-...+..+|.+.+++
T Consensus       536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN  608 (1018)
T KOG2002|consen  536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN  608 (1018)
T ss_pred             hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence            5434455688999999999999999999999999999999999999999988888776555545566555544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=5.7e-10  Score=105.93  Aligned_cols=391  Identities=12%  Similarity=0.130  Sum_probs=294.5

Q ss_pred             HhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh-HHHHHHHHHccCCCchHHH
Q 047067           38 AKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQF-TLSSVLKASGAGATDDKFG  113 (566)
Q Consensus        38 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~  113 (566)
                      -.++++..|+.+|+...   .++...|---+..=.++.++..|..++++....  -|-+. .|---+-.=-..|+.. .+
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~-ga  160 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIA-GA  160 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccH-HH
Confidence            34567778999999865   567778888888888999999999999988764  44432 2222222233457888 89


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHC-C
Q 047067          114 RQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTAL--ESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE-G  190 (566)
Q Consensus       114 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g  190 (566)
                      +++|..-.+  ..|+...|++.|+.=.+-+.++.|+.++++.  ..|++.+|--....-.++|....|..+|....+. |
T Consensus       161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~  238 (677)
T KOG1915|consen  161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG  238 (677)
T ss_pred             HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence            999988766  4799999999999999999999999999985  4689999999999999999999999999887663 1


Q ss_pred             -CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHhcCCHHHHHHHH--------HhcCCC
Q 047067          191 -FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLV--AFVGNTLVDMYAKSGSIEDAEKVF--------NRLLKR  259 (566)
Q Consensus       191 -~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~~  259 (566)
                       -.-+...|++....-.....++.|.-+|..++..= +.+  ..+|..+...=-+-|+......+.        +.+...
T Consensus       239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~  317 (677)
T KOG1915|consen  239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK  317 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence             01122334444444456677899999999988763 333  456666666655667655444332        223222


Q ss_pred             ---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HccCCHHHHHHHHHhHHhhC
Q 047067          260 ---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ-------VTFLCVLTAC---SHAGLLDEGQGYFALMKKHG  326 (566)
Q Consensus       260 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~  326 (566)
                         |-.+|--.+..-...|+.+...++|++.+.. ++|-.       ..|.-+=-+|   ....+++.+.++++...+ -
T Consensus       318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-l  395 (677)
T KOG1915|consen  318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-L  395 (677)
T ss_pred             CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-h
Confidence               5678888888888889999999999999886 56532       1222222222   347889999999977776 3


Q ss_pred             CCccHHHHHHHHHHhh----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047067          327 VEPEEAHYVTFVDLLG----RAGLLDRALKFIREM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHI  401 (566)
Q Consensus       327 ~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  401 (566)
                      ++....++.-+--+|+    ++.++..|.+++... |..|...++...|..-.+.++++....++++.++..|.+..++.
T Consensus       396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~  475 (677)
T KOG1915|consen  396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS  475 (677)
T ss_pred             cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence            4555666666655554    789999999999877 88999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 047067          402 LLANIYASAGRLNDAARARKMMKESGVKKEPACSW  436 (566)
Q Consensus       402 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~  436 (566)
                      ..+..-...|+++.|+.+|+...++...--|..-|
T Consensus       476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw  510 (677)
T KOG1915|consen  476 KYAELETSLGDTDRARAIFELAISQPALDMPELLW  510 (677)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence            99999999999999999999998876544454445

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.51  E-value=1.6e-09  Score=106.88  Aligned_cols=396  Identities=10%  Similarity=0.072  Sum_probs=298.9

Q ss_pred             CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHH
Q 047067            6 KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFS   82 (566)
Q Consensus         6 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~   82 (566)
                      .+.+.|+.++.+.++. .+.+...|    -+|++...++.|.+++.+..   +.+...|-+-...=-++|+.+...++..
T Consensus       390 E~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~  464 (913)
T KOG0495|consen  390 EEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID  464 (913)
T ss_pred             cChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3445567667766664 23334444    44556677888888877654   5678888877777778888888877765


Q ss_pred             H----HHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047067           83 Q----MLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWN--VYVGSSLLDMYARFDQMDDAWFLFTALE  156 (566)
Q Consensus        83 ~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~  156 (566)
                      +    +...|+..+...|..=..+|-..|..- ..+.|..-++..|++..  ..+|+.-...+.+.+.++.|+.+|....
T Consensus       465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~-TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al  543 (913)
T KOG0495|consen  465 RGLSELQANGVEINRDQWLKEAEACEDAGSVI-TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL  543 (913)
T ss_pred             HHHHHHhhcceeecHHHHHHHHHHHhhcCChh-hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence            5    456788899999988888898888888 88888888888887543  5578888888999999999999998876


Q ss_pred             C---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHH
Q 047067          157 S---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVG  233 (566)
Q Consensus       157 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  233 (566)
                      +   .+...|...+..--..|..++-..+|++.... ++-....+....+-.-..|+...|+.++.++.+.. +.+..++
T Consensus       544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiw  621 (913)
T KOG0495|consen  544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIW  621 (913)
T ss_pred             hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHH
Confidence            5   36678888887777888899999999998875 33344445445555667799999999999998876 4477888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccC
Q 047067          234 NTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAG  310 (566)
Q Consensus       234 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g  310 (566)
                      -+-+..-....+++.|+.+|.+..  .++...|.--+..---.+..++|++++++.++.  -|+ ...|..+.+.+-+.+
T Consensus       622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~  699 (913)
T KOG0495|consen  622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME  699 (913)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence            888999999999999999998874  456677777666666778899999999988883  566 456777778888899


Q ss_pred             CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067          311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP-IEP-TAAVWGALLGACRMHKNVELGAYAAER  388 (566)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~  388 (566)
                      +++.|...|..-.+ .++..+..|-.|.+.=-+.|.+-.|..++++.. -.| +...|-..+..-.+.|+.+.|..+..+
T Consensus       700 ~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmak  778 (913)
T KOG0495|consen  700 NIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAK  778 (913)
T ss_pred             HHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999988843222 234456678888888888999999999999882 134 668999999999999999999999999


Q ss_pred             HHhcCCCCCchHHHHHHHHHhcCC
Q 047067          389 IFELDPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       389 ~~~~~p~~~~~~~~l~~~~~~~g~  412 (566)
                      +++--|++...+.--+.+..+.++
T Consensus       779 ALQecp~sg~LWaEaI~le~~~~r  802 (913)
T KOG0495|consen  779 ALQECPSSGLLWAEAIWLEPRPQR  802 (913)
T ss_pred             HHHhCCccchhHHHHHHhccCccc
Confidence            887666655444443333333333

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=6.3e-12  Score=124.23  Aligned_cols=276  Identities=16%  Similarity=0.067  Sum_probs=212.8

Q ss_pred             CHHHHHHHHHhCCCC--ChH-HHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 047067          144 QMDDAWFLFTALESK--NEV-SWNALIAGHARKSEGEKALRTFSEMLREG--FEPTHFSYSSVFTALASTGSLEQGKWVH  218 (566)
Q Consensus       144 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~~~~  218 (566)
                      +..+|...|..+++.  |+- ....+..+|...+++++|.++|+...+..  ..-+...|.+++-.+-+    +.+...+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence            457888899886653  433 34567788999999999999999997743  11255677776654422    1222233


Q ss_pred             HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047067          219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN  295 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  295 (566)
                      .+-+-.--+..+.+|.++.++|.-.++.+.|++.|++..+-   ...+|+.+..-+.....+|.|...|+..+.  +.|.
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r  487 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR  487 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence            22222223667889999999999999999999999998654   457888888888999999999999999877  3443


Q ss_pred             -HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 047067          296 -QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGA  372 (566)
Q Consensus       296 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~  372 (566)
                       ...|..+...|.+.++++.|.-.|+++.+.+ +.+.....++...+.+.|+.++|+++++++ .++| |+..----...
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i  566 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI  566 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence             4577888899999999999999998776644 234555667778899999999999999998 4444 44433344555


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       373 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +...+++++|++.++++.++-|++...|..++.+|.+.|+.+.|..-|.-|.+.
T Consensus       567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            677899999999999999999999999999999999999999999988888764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.49  E-value=1.6e-09  Score=106.77  Aligned_cols=428  Identities=12%  Similarity=0.071  Sum_probs=236.1

Q ss_pred             CCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC--------CCCcchHHHHHHHHHhCCC
Q 047067            2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP--------VKDMVTWTALISGYSQNDQ   73 (566)
Q Consensus         2 c~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~   73 (566)
                      ++++..++.|+.++....+. ++.++..|..-...=-..|+.+...++.++-.        .-|...|-.=...+-..|.
T Consensus       416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags  494 (913)
T KOG0495|consen  416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS  494 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence            34555677788888877664 67778888766666667788888887776532        1233445444455555555


Q ss_pred             ccHHHHHHHHHHHCCCCCC--hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 047067           74 PENAIILFSQMLRLGLKPN--QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFL  151 (566)
Q Consensus        74 ~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~  151 (566)
                      .-.+..+....+..|+.-.  ..||...-..|.+.+.++ .++.++...++. ++.+..+|......=-..|..++-..+
T Consensus       495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~-carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al  572 (913)
T KOG0495|consen  495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE-CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL  572 (913)
T ss_pred             hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH-HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence            5555555555555554322  335555555566666665 666666655543 233444444444444444444444444


Q ss_pred             HHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--------------------------------CCCCHH
Q 047067          152 FTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREG--------------------------------FEPTHF  196 (566)
Q Consensus       152 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------------------~~pd~~  196 (566)
                      |++...   +..+.|-....-+-..|+...|..++....+..                                ..|+..
T Consensus       573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR  652 (913)
T KOG0495|consen  573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER  652 (913)
T ss_pred             HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence            444332   233344444444444444444444444444432                                234444


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH
Q 047067          197 SYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQ  273 (566)
Q Consensus       197 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~  273 (566)
                      .|..-++.---+++.++|.+++++.++.- +.-...|-.+...+-+.++++.|.+.|..-.+   ..+..|-.|...=-+
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk  731 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK  731 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence            44333333334444455555554444432 22333444444445555555555554443321   123344444444444


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHH
Q 047067          274 HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKF  353 (566)
Q Consensus       274 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  353 (566)
                      .|+.-.|..++++.+..+.+ |...|...|..-.+.|+.++|........+ .++.+...|..-|.+..+-++-..+.+.
T Consensus       732 ~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LWaEaI~le~~~~rkTks~DA  809 (913)
T KOG0495|consen  732 DGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLWAEAIWLEPRPQRKTKSIDA  809 (913)
T ss_pred             hcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhHHHHHHhccCcccchHHHHH
Confidence            45555555555555444322 444555555555555555555555533222 1233444455555555555554444444


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCc
Q 047067          354 IREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPA  433 (566)
Q Consensus       354 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  433 (566)
                      +++..  .|+.+.-++...+-...+++.|.+-|.++++.+|++..++..+...+...|.-++-.+++.+....  .|.-|
T Consensus       810 Lkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG  885 (913)
T KOG0495|consen  810 LKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHG  885 (913)
T ss_pred             HHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCC
Confidence            44442  234444445555666778999999999999999999999999999999999999999999888764  35567


Q ss_pred             eeEEEe
Q 047067          434 CSWVET  439 (566)
Q Consensus       434 ~s~~~~  439 (566)
                      ..|..+
T Consensus       886 ~~W~av  891 (913)
T KOG0495|consen  886 ELWQAV  891 (913)
T ss_pred             cHHHHH
Confidence            777644

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.49  E-value=1.2e-09  Score=111.87  Aligned_cols=344  Identities=13%  Similarity=0.115  Sum_probs=259.3

Q ss_pred             CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC---CCCCcchHHHHHHHHHhCCCccHHHHHHH
Q 047067            6 KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEM---PVKDMVTWTALISGYSQNDQPENAIILFS   82 (566)
Q Consensus         6 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~   82 (566)
                      |+++.|..|+..+++.. +.+...|-.|...|-..|+.+++...+-..   .+.|...|-.+..-..+.|.+++|.-.|.
T Consensus       153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS  231 (895)
T ss_pred             CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            89999999999999986 667888999999999999999999877543   46677889999999999999999999999


Q ss_pred             HHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCHHHHHHHHHhCCC-
Q 047067           83 QMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSS----LLDMYARFDQMDDAWFLFTALES-  157 (566)
Q Consensus        83 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~~-  157 (566)
                      +.++.. +++...+--=...|-+.|+.. .+..-+..+.+...+.|..-...    .+..|...++-+.|.+.++.... 
T Consensus       232 rAI~~~-p~n~~~~~ers~L~~~~G~~~-~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  232 RAIQAN-PSNWELIYERSSLYQKTGDLK-RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK  309 (895)
T ss_pred             HHHhcC-CcchHHHHHHHHHHHHhChHH-HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            998863 444444445556677888888 77777777777654333333333    34556667777889998887665 


Q ss_pred             -C---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH--------------------------HHHHHHHhc
Q 047067          158 -K---NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSY--------------------------SSVFTALAS  207 (566)
Q Consensus       158 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~--------------------------~~ll~~~~~  207 (566)
                       .   +...+|.++..|.+...++.|......+......+|..-+                          .-+.-++.+
T Consensus       310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~  389 (895)
T KOG2076|consen  310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH  389 (895)
T ss_pred             ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence             2   4457889999999999999999998888762222222111                          112233445


Q ss_pred             cCChHHHHHHHHHHHHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCCHHHHH
Q 047067          208 TGSLEQGKWVHAHVIKSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK----RDVVSWNSMLTGCAQHGLGKATV  281 (566)
Q Consensus       208 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~  281 (566)
                      ....+....+.....+..  +..+...|.-+.++|...|++.+|..+|..+..    .+...|--+..+|...|.+++|+
T Consensus       390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~  469 (895)
T KOG2076|consen  390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI  469 (895)
T ss_pred             ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence            556666666666666666  455667888899999999999999999999853    36789999999999999999999


Q ss_pred             HHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHH--------hhCCCccHHHHHHHHHHhhhcCCHHHHHH
Q 047067          282 RWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMK--------KHGVEPEEAHYVTFVDLLGRAGLLDRALK  352 (566)
Q Consensus       282 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~  352 (566)
                      +.|++.+.  ..|+ ...-.+|-..+.+.|+.++|.+.+..+.        ..+..|+........+.|.+.|+.++=..
T Consensus       470 e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~  547 (895)
T KOG2076|consen  470 EFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN  547 (895)
T ss_pred             HHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            99999998  4555 3455566677889999999999996533        23355666666677888999999887544


Q ss_pred             HH
Q 047067          353 FI  354 (566)
Q Consensus       353 ~~  354 (566)
                      ..
T Consensus       548 t~  549 (895)
T KOG2076|consen  548 TA  549 (895)
T ss_pred             HH
Confidence            43

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.48  E-value=7.1e-11  Score=118.44  Aligned_cols=220  Identities=13%  Similarity=-0.004  Sum_probs=141.7

Q ss_pred             HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH-------hHHHHHHHHH
Q 047067          168 AGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA-------FVGNTLVDMY  240 (566)
Q Consensus       168 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~  240 (566)
                      ..+...|++++|...++++.+.. +-+...+..+...+.+.|+++.+..++..+.+.+..++.       ..+..++...
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555554432 122334444444555555555555555555544332111       1223334444


Q ss_pred             HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 047067          241 AKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQG  317 (566)
Q Consensus       241 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  317 (566)
                      .+..+.+...++++.++.   .++.....+..++...|+.++|.+++++..+.  .||...  .++.+....++.+++.+
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~  315 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEK  315 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHH
Confidence            444556666667766643   46777888888888889999999988888773  444421  12333345588888888


Q ss_pred             HHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067          318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELD  393 (566)
Q Consensus       318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  393 (566)
                      ..+...+.. +-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|...+++.+.+-
T Consensus       316 ~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        316 VLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            885555432 345666778888999999999999999888 667888888888888999999999999999887753

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=9.1e-12  Score=123.14  Aligned_cols=245  Identities=14%  Similarity=0.099  Sum_probs=188.9

Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHHHHHH
Q 047067          174 SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGG--QLVAFVGNTLVDMYAKSGSIEDAEK  251 (566)
Q Consensus       174 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~  251 (566)
                      -+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+...  ..+..+|++.+.-+-+.-.+.---+
T Consensus       333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq  411 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ  411 (638)
T ss_pred             HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence            3567888888885443 333446666788899999999999999999877642  3456677776654433222211111


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067          252 VFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE  330 (566)
Q Consensus       252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~  330 (566)
                      -+-.+....+.+|-++..+|.-.++.+.|++.|++..+  +.| ...+|+.+..=+.....+|.|...|+...    ..|
T Consensus       412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~  485 (638)
T KOG1126|consen  412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVD  485 (638)
T ss_pred             HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCC
Confidence            11122344678999999999999999999999999988  566 57888888888888889999999996544    345


Q ss_pred             HHHHHH---HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067          331 EAHYVT---FVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLAN  405 (566)
Q Consensus       331 ~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  405 (566)
                      ..+|++   |...|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|++++++++.++|.|+-.-...+.
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~  565 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS  565 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence            566665   456788999999999999988 7778 45666777778889999999999999999999999988889999


Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 047067          406 IYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       406 ~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ++...+++++|.+.++++++
T Consensus       566 il~~~~~~~eal~~LEeLk~  585 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKE  585 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHH
Confidence            99999999999999999987

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=8.9e-10  Score=104.47  Aligned_cols=252  Identities=13%  Similarity=0.115  Sum_probs=178.0

Q ss_pred             HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHH
Q 047067          170 HARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGG--QLVAFVGNTLVDMYAKSGSIE  247 (566)
Q Consensus       170 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~  247 (566)
                      +....+.+++++-.......|++.+...-+....+.-...++++|..+|+.+.+...  -.|..+|+.++-.--.+.++.
T Consensus       237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs  316 (559)
T KOG1155|consen  237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS  316 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence            333344555555555555555443333333333344455566666666666665532  123444444442222211111


Q ss_pred             H-HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhh
Q 047067          248 D-AEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKH  325 (566)
Q Consensus       248 ~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  325 (566)
                      - |..++ .+.+=.+.|...+..-|+-.++.++|+..|++.++.  .|. ...|+.+..-|....+...|.+-++...+-
T Consensus       317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi  393 (559)
T KOG1155|consen  317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI  393 (559)
T ss_pred             HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence            1 11111 112223445555666677889999999999999984  454 567778888899999999999999877765


Q ss_pred             CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067          326 GVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILL  403 (566)
Q Consensus       326 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  403 (566)
                      . +.|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|.+++..+..+..++..|
T Consensus       394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L  472 (559)
T KOG1155|consen  394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL  472 (559)
T ss_pred             C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence            4 457788999999999999999999999998 6677 778999999999999999999999999999888788899999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHh
Q 047067          404 ANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       404 ~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ++.|-+.++.++|.+.+++-.+
T Consensus       473 akLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  473 AKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999998876

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4.7e-10  Score=106.30  Aligned_cols=372  Identities=12%  Similarity=0.112  Sum_probs=232.4

Q ss_pred             CCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHH--HHH
Q 047067           23 FKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLS--SVL  100 (566)
Q Consensus        23 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll  100 (566)
                      ..-|.+.+-...-.+-+.|....|+..|......-+..|.+-+....-.-+.+.+    ..... |...|..-+.  .+.
T Consensus       160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~~  234 (559)
T KOG1155|consen  160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFLK  234 (559)
T ss_pred             ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHHH
Confidence            3455555544455566778888888888776655555555444332222222221    11111 2222211111  123


Q ss_pred             HHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------ChHHHHHHHHHHHhCC
Q 047067          101 KASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK------NEVSWNALIAGHARKS  174 (566)
Q Consensus       101 ~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g  174 (566)
                      .++-.....+ .+.+=.......|++.+...-+-...++-...+++.|+.+|+++.+.      |..+|+..+-  .++.
T Consensus       235 ~a~~el~q~~-e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~  311 (559)
T KOG1155|consen  235 KAYQELHQHE-EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND  311 (559)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence            3444444344 55555555666777777777777777777788888888888888763      5567766653  3333


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067          175 EGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFN  254 (566)
Q Consensus       175 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  254 (566)
                      +..-  ..+.+-...=-+--+.|...+.+-|+-.++.+.|...|+..++.+ +....+|+.+..-|....+...|++.++
T Consensus       312 ~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  312 KSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             hHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            2222  222111111012233567777778888888888888888888876 5566778888888888888888888888


Q ss_pred             hcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067          255 RLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE  330 (566)
Q Consensus       255 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~  330 (566)
                      ...   .+|-..|-.|.++|.-.+.+.-|+-.|++...  ++| |...|.+|..+|.+.+++++|+..|......| +.+
T Consensus       389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte  465 (559)
T KOG1155|consen  389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE  465 (559)
T ss_pred             HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence            764   34667888888888888888888888888887  455 56788888888888888888888886655544 335


Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-------P-IEPTAA-VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHI  401 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  401 (566)
                      ...+..|.++|-+.++.++|...|++-       + +.|... +.--|..-+.+.+++++|.....+....++       
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-------  538 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-------  538 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-------
Confidence            567778888888888888887777654       2 223221 222244456677777777655555444322       


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh
Q 047067          402 LLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       402 ~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                                ..++|..++++.+.
T Consensus       539 ----------e~eeak~LlReir~  552 (559)
T KOG1155|consen  539 ----------ECEEAKALLREIRK  552 (559)
T ss_pred             ----------hHHHHHHHHHHHHH
Confidence                      33577777776654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=2.7e-09  Score=101.45  Aligned_cols=390  Identities=13%  Similarity=0.069  Sum_probs=186.4

Q ss_pred             CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHH
Q 047067            6 KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFS   82 (566)
Q Consensus         6 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~   82 (566)
                      +++..|+.||++.+... ..+..+|-..+.+=.++..+..|+.+|+...   ++--..|---+..=-..|++..|.++|+
T Consensus        87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife  165 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45566777777776654 4556666666666667777777777766543   1111223333333334455666666665


Q ss_pred             HHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----
Q 047067           83 QMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK----  158 (566)
Q Consensus        83 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----  158 (566)
                      +-..  ..|+...|.+.++.=.+....+ .++.|++..+-.  .|++..|--....=.++|.+..|+.+|+...+.    
T Consensus       166 rW~~--w~P~eqaW~sfI~fElRykeie-raR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d  240 (677)
T KOG1915|consen  166 RWME--WEPDEQAWLSFIKFELRYKEIE-RARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD  240 (677)
T ss_pred             HHHc--CCCcHHHHHHHHHHHHHhhHHH-HHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence            5554  3566666666665555555555 555555554432  355555555555555556666665555554321    


Q ss_pred             --ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-------------------------------------------CCC
Q 047067          159 --NEVSWNALIAGHARKSEGEKALRTFSEMLREG-------------------------------------------FEP  193 (566)
Q Consensus       159 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------------------------------~~p  193 (566)
                        +...+++...--.++..++.|--+|+-.+..=                                           -+-
T Consensus       241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~  320 (677)
T KOG1915|consen  241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY  320 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence              12223333333333444444444444333320                                           123


Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHh------HHH---HHHHHHHhcCCHHHHHHHHHhcC---CCCh
Q 047067          194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAF------VGN---TLVDMYAKSGSIEDAEKVFNRLL---KRDV  261 (566)
Q Consensus       194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~---~li~~~~~~g~~~~A~~~~~~~~---~~~~  261 (566)
                      |-.||--.++.-...|+.+...++++.++..-.+....      +|-   -.+-.=....+++.+.++|+...   ....
T Consensus       321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk  400 (677)
T KOG1915|consen  321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK  400 (677)
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence            33444444444444555555555555554432111110      110   00111112344555555554432   1122


Q ss_pred             hHHHHHHHH----HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHH
Q 047067          262 VSWNSMLTG----CAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTF  337 (566)
Q Consensus       262 ~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  337 (566)
                      .|+.-+--.    -.++.+...|.+++-..+.  .-|-..+|...|..-.+.+.++....+++.....+ +-+..+|...
T Consensus       401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky  477 (677)
T KOG1915|consen  401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY  477 (677)
T ss_pred             chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence            222222222    2234445555555544433  34555555555555555555555555554444433 2234444444


Q ss_pred             HHHhhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067          338 VDLLGRAGLLDRALKFIREMPIEP----TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLAN  405 (566)
Q Consensus       338 i~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  405 (566)
                      ...=...|+.+.|..+|+-.-.+|    -...|.+.|.--...|.++.|..+++++++..+... ++...+.
T Consensus       478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~  548 (677)
T KOG1915|consen  478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK  548 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence            444455555555555555441122    123455555555555555556666665555554433 4444333

>TIGR00540 hemY_coli hemY protein

Probab=99.45  E-value=1.1e-10  Score=117.73  Aligned_cols=252  Identities=10%  Similarity=-0.030  Sum_probs=149.1

Q ss_pred             HHHHhcCCHHHHHHHHHhCCC--CC--hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 047067          137 DMYARFDQMDDAWFLFTALES--KN--EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLE  212 (566)
Q Consensus       137 ~~y~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~  212 (566)
                      .++.+.|+.+.|.+.|.+..+  |+  ....-+....+.+.|+++.|.+.++.+.+.. +-+...+..+...+...|+++
T Consensus       126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence            344445555555555554322  11  1122223444555555666666665555543 123344455555555566666


Q ss_pred             HHHHHHHHHHHhCCCCcHhHH-------HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHH
Q 047067          213 QGKWVHAHVIKSGGQLVAFVG-------NTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVR  282 (566)
Q Consensus       213 ~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~  282 (566)
                      .+.+++..+.+.+..+.....       ..+++.-......+...+.++..+.   .+...+..+...+...|+.++|.+
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~  284 (409)
T TIGR00540       205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE  284 (409)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence            666666555555432222111       1111111122223444455555543   377888888888899999999999


Q ss_pred             HHHHHHHcCCCCCHHH--H-HHHHHHHHccCCHHHHHHHHHhHHhh-CCCccHHHHHHHHHHhhhcCCHHHHHHHHHh--
Q 047067          283 WFEKMLRNGIAPNQVT--F-LCVLTACSHAGLLDEGQGYFALMKKH-GVEPEEAHYVTFVDLLGRAGLLDRALKFIRE--  356 (566)
Q Consensus       283 ~~~~m~~~g~~p~~~t--~-~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--  356 (566)
                      ++++..+.  .||...  + ..........++.+.+.+.++...+. .-.|+.....++...+.+.|++++|.+.|+.  
T Consensus       285 ~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~  362 (409)
T TIGR00540       285 IIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA  362 (409)
T ss_pred             HHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence            99988885  344332  1 11222223457778888888544433 2222225566888889999999999999993  


Q ss_pred             C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          357 M-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       357 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      . ...|+...+..+...+...|+.++|.+++++.++
T Consensus       363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3 5678888888888889999999999999998865

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.44  E-value=1.3e-12  Score=124.95  Aligned_cols=249  Identities=14%  Similarity=0.106  Sum_probs=90.9

Q ss_pred             HHHHHHHhcCChhHHHHHHcc-CC----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccC
Q 047067           32 TILNAYAKCGCLDEARKLFDE-MP----VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAG  106 (566)
Q Consensus        32 ~li~~~~~~g~~~~A~~~f~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~  106 (566)
                      .+..++.+.|++++|.++++. ..    ..|+.-|..+.......+++++|+..++++...+..                
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~----------------   76 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA----------------   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence            446666677777777777743 21    224445555555555666677777777666653211                


Q ss_pred             CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CChHHHHHHHHHHHhCCChhHHHHHHH
Q 047067          107 ATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES--KNEVSWNALIAGHARKSEGEKALRTFS  184 (566)
Q Consensus       107 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~  184 (566)
                                           ++..+..++.. ...+++++|.+++...-+  ++...+..++..+.+.++++++.++++
T Consensus        77 ---------------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~  134 (280)
T PF13429_consen   77 ---------------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE  134 (280)
T ss_dssp             ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred             ---------------------ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence                                 22233344444 455666677666655432  355566677777777788888888777


Q ss_pred             HHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCC
Q 047067          185 EMLREG-FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL---LKRD  260 (566)
Q Consensus       185 ~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~  260 (566)
                      ...... .+++...|......+.+.|+.++|...++++++.. |.|..+.+.++.++...|+.+++.+++...   ...|
T Consensus       135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~  213 (280)
T PF13429_consen  135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD  213 (280)
T ss_dssp             HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred             HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence            766432 34455666667777777777788887777777765 345666777777777777777766666554   3446


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      ...|..+..+|...|+.++|+.+|++..... +.|......+..++...|+.++|.++..
T Consensus       214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~  272 (280)
T PF13429_consen  214 PDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR  272 (280)
T ss_dssp             CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred             HHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            6677777788888888888888888877642 2356666777777777777777777663

>TIGR00540 hemY_coli hemY protein

Probab=99.43  E-value=7.1e-10  Score=111.84  Aligned_cols=282  Identities=11%  Similarity=0.015  Sum_probs=199.9

Q ss_pred             HHhcCCHHHHHHHHHhCCCC--C-hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHH
Q 047067          139 YARFDQMDDAWFLFTALESK--N-EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHF--SYSSVFTALASTGSLEQ  213 (566)
Q Consensus       139 y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~  213 (566)
                      -...|+++.|.+.+.+..+.  + ...+-....++.+.|+++.|.+.|.+..+.  .|+..  .-..........|+++.
T Consensus        94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence            34579999999999887653  2 334455567788889999999999998764  34443  33334777788999999


Q ss_pred             HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH----HHHHHHHHcCCHHHHHHHHHH
Q 047067          214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWN----SMLTGCAQHGLGKATVRWFEK  286 (566)
Q Consensus       214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~  286 (566)
                      |...++.+.+.. +.+..+...+..+|.+.|++++|.+.+..+.+.   +...+.    ....++...+..+++.+.+..
T Consensus       172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999887 556678889999999999999999999988643   333232    111222333334444455555


Q ss_pred             HHHcCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh--hhcCCHHHHHHHHHhC-CCC
Q 047067          287 MLRNGI---APNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL--GRAGLLDRALKFIREM-PIE  360 (566)
Q Consensus       287 m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~-~~~  360 (566)
                      +.+...   +.+...+..+...+...|+.++|...++...+...++....+. ++..+  ...++.+.+.+.+++. ...
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            555321   1377788888899999999999999996665543222211111 22222  3357788888888776 334


Q ss_pred             CCH---HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          361 PTA---AVWGALLGACRMHKNVELGAYAAE--RIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       361 p~~---~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      |+.   ....++...+.+.|++++|.+.++  ...+..|++. .+..++..+.+.|+.++|.+++++...
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            433   566788888999999999999999  5777788765 567999999999999999999988644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=7.5e-10  Score=105.62  Aligned_cols=215  Identities=18%  Similarity=0.154  Sum_probs=174.3

Q ss_pred             hccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHH
Q 047067          206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVR  282 (566)
Q Consensus       206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~  282 (566)
                      .-.|+.-.+..-++.+++....++. .|--+..+|....+.++..+.|+...   ..|+.+|..-.+.+.-.+++++|+.
T Consensus       337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            4457888888899999887644333 36667778999999999999998874   3477888888888888899999999


Q ss_pred             HHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 047067          283 WFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE  360 (566)
Q Consensus       283 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~  360 (566)
                      =|++.+.  +.| +...|..+.-+..+.+.++++...|+...+ .++...++|+-....+...++++.|.+.|+.. .+.
T Consensus       416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            9999988  455 466777777777889999999999976554 46777889999999999999999999999876 444


Q ss_pred             CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          361 PT---------AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       361 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      |+         +.+-.+++.. .-.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++...
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            44         2222222222 2348999999999999999999999999999999999999999999998754

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.38  E-value=7.2e-10  Score=112.78  Aligned_cols=400  Identities=13%  Similarity=0.052  Sum_probs=243.3

Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC----CcchHHHHHHHHHhCCCccHHHHHHHHHHHCC
Q 047067           13 IVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVK----DMVTWTALISGYSQNDQPENAIILFSQMLRLG   88 (566)
Q Consensus        13 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g   88 (566)
                      .++..+...|+.|+.++|.+||.-|+..|+.+.|- +|.-|.-+    +...++.++.+..+.++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            45677888999999999999999999999999998 88887633    3345666666666666665554          


Q ss_pred             CCCChhHHHHHHHHHccCCCchHHHHHHHHHHH-------HhCC-----------------CCchhHHHHHHHHHHhcCC
Q 047067           89 LKPNQFTLSSVLKASGAGATDDKFGRQVHAFCL-------KYGY-----------------DWNVYVGSSLLDMYARFDQ  144 (566)
Q Consensus        89 ~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~-------~~g~-----------------~~~~~~~~~li~~y~~~g~  144 (566)
                       .|-..||..++.+|...||+. .-..+-+.+.       ..|+                 -||.   ..++....-.|-
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli-~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~egl  154 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLI-LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGL  154 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchH-HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHH
Confidence             466667777777777776665 3222222111       1111                 1111   112222233333


Q ss_pred             HHHHHHHHHhCC---------------------------------C-CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047067          145 MDDAWFLFTALE---------------------------------S-KNEVSWNALIAGHARKSEGEKALRTFSEMLREG  190 (566)
Q Consensus       145 ~~~A~~~f~~~~---------------------------------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  190 (566)
                      ++.+.++...+|                                 + ++..++.+.+..-..+|+.+.|..++.+|.+.|
T Consensus       155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g  234 (1088)
T KOG4318|consen  155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG  234 (1088)
T ss_pred             HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence            444444433332                                 2 567788889998899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH-----------Hhc---
Q 047067          191 FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVF-----------NRL---  256 (566)
Q Consensus       191 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-----------~~~---  256 (566)
                      ++.+..-|..++-+   .++......+.+-|...|+.|+..++.-.+-...+.|....+.+..           ..|   
T Consensus       235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg  311 (1088)
T KOG4318|consen  235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG  311 (1088)
T ss_pred             CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence            99998888887765   7788888889999999999999988876665555544322221111           001   


Q ss_pred             -------------------C-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC-HHHHH-------
Q 047067          257 -------------------L-------KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG--IAPN-QVTFL-------  300 (566)
Q Consensus       257 -------------------~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~-~~t~~-------  300 (566)
                                         +       .....+|...+.. ...|..++..++...|..--  ..|+ ...|.       
T Consensus       312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF  390 (1088)
T KOG4318|consen  312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF  390 (1088)
T ss_pred             cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence                               0       0112233332222 12343333333333332100  0110 01111       


Q ss_pred             -------------------------------------------------------------------------HHHHHHH
Q 047067          301 -------------------------------------------------------------------------CVLTACS  307 (566)
Q Consensus       301 -------------------------------------------------------------------------~ll~a~~  307 (566)
                                                                                               .++..|.
T Consensus       391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~  470 (1088)
T KOG4318|consen  391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN  470 (1088)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence                                                                                     1111111


Q ss_pred             ccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHH
Q 047067          308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP-----IEPTAAVWGALLGACRMHKNVELG  382 (566)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a  382 (566)
                      ..-+..++...-++....-+   ...|..||+.+....++++|..+.++..     +.-|..-+..+.+...+++....+
T Consensus       471 se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl  547 (1088)
T KOG4318|consen  471 SEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL  547 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence            11111112111111111111   1457788888888888999999888872     223455667778888888888888


Q ss_pred             HHHHHHHHhc---CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 047067          383 AYAAERIFEL---DPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSW  436 (566)
Q Consensus       383 ~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~  436 (566)
                      ..+++++.+.   .|.-..+..-+.+.-+..|+.+.-.++++-+...|+.- .+--|
T Consensus       548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~  603 (1088)
T KOG4318|consen  548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW  603 (1088)
T ss_pred             HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence            8888888763   24334556667777888999999999999999988865 34344

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=2.3e-09  Score=101.20  Aligned_cols=359  Identities=10%  Similarity=0.082  Sum_probs=238.4

Q ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCC------------Cc
Q 047067           61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYD------------WN  128 (566)
Q Consensus        61 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~------------~~  128 (566)
                      .|.+.-.|.+.|+++.|+.-|+...+.  .||..+-..++-.+...++.+ ..++.|..++.....            |+
T Consensus       279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~e-kmkeaf~kli~ip~~~dddkyi~~~ddp~  355 (840)
T KOG2003|consen  279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAE-KMKEAFQKLIDIPGEIDDDKYIKEKDDPD  355 (840)
T ss_pred             HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHH-HHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence            444445577889999999999888774  688776555555555667777 778888888764322            22


Q ss_pred             hhHHHHHH-----HHHHhcCC--HHHHH----HHHHhCCCCChH---HH----------H--------HHHHHHHhCCCh
Q 047067          129 VYVGSSLL-----DMYARFDQ--MDDAW----FLFTALESKNEV---SW----------N--------ALIAGHARKSEG  176 (566)
Q Consensus       129 ~~~~~~li-----~~y~~~g~--~~~A~----~~f~~~~~~~~~---~~----------~--------~li~~~~~~g~~  176 (566)
                      ....|--+     .-.-+.+.  .+++.    ++..-...+|-.   -|          .        .-..-|.++|++
T Consensus       356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~  435 (840)
T KOG2003|consen  356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI  435 (840)
T ss_pred             hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence            22222211     11111111  11111    111111222210   01          0        112347899999


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067          177 EKALRTFSEMLREGFEPTHFSYS--SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFN  254 (566)
Q Consensus       177 ~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  254 (566)
                      +.|+++++-..+..-+.-...-+  .++.......++-.|.++-+..+... .-+....+.-.+.-...|++++|.+.|+
T Consensus       436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk  514 (840)
T KOG2003|consen  436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK  514 (840)
T ss_pred             HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence            99999998887654332222222  22333333446777777776665543 2233333333344556799999999999


Q ss_pred             hcCCCChhHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH
Q 047067          255 RLLKRDVVSWNSML---TGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE  331 (566)
Q Consensus       255 ~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~  331 (566)
                      +....|...-.+|.   -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++..... -++.|.
T Consensus       515 eal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp  592 (840)
T KOG2003|consen  515 EALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDP  592 (840)
T ss_pred             HHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCH
Confidence            99888765544443   3477889999999999988653 344677888888999999999999999855432 356678


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067          332 AHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS  409 (566)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  409 (566)
                      .+...|.+.|-+.|+-..|.+..-+- ..-| +..+..-|...|....-.+.++..|+++--+.|+.......++.++.+
T Consensus       593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr  672 (840)
T KOG2003|consen  593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR  672 (840)
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence            89999999999999999999986554 3333 455555566667777778999999999999999887666677788889


Q ss_pred             cCChhHHHHHHHHHHh
Q 047067          410 AGRLNDAARARKMMKE  425 (566)
Q Consensus       410 ~g~~~~a~~~~~~m~~  425 (566)
                      .|++..|..+++..-.
T Consensus       673 sgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  673 SGNYQKAFDLYKDIHR  688 (840)
T ss_pred             cccHHHHHHHHHHHHH
Confidence            9999999999998854

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=4.8e-09  Score=102.09  Aligned_cols=405  Identities=12%  Similarity=0.046  Sum_probs=273.6

Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHcc--CCCCCcchHHHHHHHHHhCCCccHHHHHHH----H
Q 047067           10 EARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDE--MPVKDMVTWTALISGYSQNDQPENAIILFS----Q   83 (566)
Q Consensus        10 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~----~   83 (566)
                      .|.-+-+.+...+  .|+...--+..+|.-.|+++.|..+...  +...|..+.......+.+..++++|+.++.    .
T Consensus        34 ~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~  111 (611)
T KOG1173|consen   34 TALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVE  111 (611)
T ss_pred             HHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            3333334444333  4555555577888878888888887764  557888888888999999999999999887    2


Q ss_pred             HHHC-------C--CCCChhH----HHHHHH-------HHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 047067           84 MLRL-------G--LKPNQFT----LSSVLK-------ASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR--  141 (566)
Q Consensus        84 m~~~-------g--~~p~~~t----~~~ll~-------a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~--  141 (566)
                      +...       +  +.+|..-    -+.-.+       .+....+.+ .++..+...+..    |+..+.++..+-..  
T Consensus       112 ~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~-~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~m  186 (611)
T KOG1173|consen  112 TNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNRE-EARDKYKEALLA----DAKCFEAFEKLVSAHM  186 (611)
T ss_pred             hcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHH-HHHHHHHHHHhc----chhhHHHHHHHHHHHh
Confidence            2110       0  1111111    111111       122233333 455554444433    22222221111110  


Q ss_pred             ------------------cC-CHHHHHHHHHhC----C----------------CCChHHHHHHHHHHHhCCChhHHHHH
Q 047067          142 ------------------FD-QMDDAWFLFTAL----E----------------SKNEVSWNALIAGHARKSEGEKALRT  182 (566)
Q Consensus       142 ------------------~g-~~~~A~~~f~~~----~----------------~~~~~~~~~li~~~~~~g~~~~A~~~  182 (566)
                                        ++ +.+.-+.+|+-.    .                +.|+..--.-..-+...+++.+..++
T Consensus       187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki  266 (611)
T KOG1173|consen  187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI  266 (611)
T ss_pred             cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence                              01 111111222211    0                01333344445567788999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 047067          183 FSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---  259 (566)
Q Consensus       183 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---  259 (566)
                      ++...+.. ++....+..-|.++...|+..+-..+=..+++.- |....+|-++.--|.-.|+..+|++.|.+...-   
T Consensus       267 t~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~  344 (611)
T KOG1173|consen  267 TEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT  344 (611)
T ss_pred             hHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc
Confidence            99988763 5555566666667778888777666666676654 667788888998899999999999999987543   


Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067          260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD  339 (566)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  339 (566)
                      =...|-.+...|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|.++|...... .+.|+.+.+-+.-
T Consensus       345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgv  422 (611)
T KOG1173|consen  345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGV  422 (611)
T ss_pred             ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhh
Confidence            3578999999999999999999998887663 1212233344555688899999999999554332 2345667777777


Q ss_pred             HhhhcCCHHHHHHHHHhC--C---C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067          340 LLGRAGLLDRALKFIREM--P---I---EP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA  410 (566)
Q Consensus       340 ~~~~~g~~~~A~~~~~~~--~---~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  410 (566)
                      ..-..+.+.+|..+|+..  +   +   .+ -..+|+.|..+|++.+.+++|+..+++.+.+.|.++.+|..++-+|...
T Consensus       423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll  502 (611)
T KOG1173|consen  423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLL  502 (611)
T ss_pred             eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence            777889999999999876  1   1   11 2356889999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHh
Q 047067          411 GRLNDAARARKMMKE  425 (566)
Q Consensus       411 g~~~~a~~~~~~m~~  425 (566)
                      |+++.|...|.+...
T Consensus       503 gnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  503 GNLDKAIDHFHKALA  517 (611)
T ss_pred             cChHHHHHHHHHHHh
Confidence            999999999998764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=7.7e-10  Score=100.29  Aligned_cols=298  Identities=15%  Similarity=0.168  Sum_probs=198.6

Q ss_pred             CCHHHHHHHHHhCCCCChHHH---HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCChHH
Q 047067          143 DQMDDAWFLFTALESKNEVSW---NALIAGHARKSEGEKALRTFSEMLREGFEPTH------FSYSSVFTALASTGSLEQ  213 (566)
Q Consensus       143 g~~~~A~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~t~~~ll~~~~~~~~~~~  213 (566)
                      .+.++|.+.|-+|.+.|..++   -+|.+.|-+.|..+.|+++-+.+.+.   ||.      ...-.+..-|...|-+|.
T Consensus        49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            567777777777776554443   45667777778888888777776653   332      123334455667777788


Q ss_pred             HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh--------hHHHHHHHHHHHcCCHHHHHHHHH
Q 047067          214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV--------VSWNSMLTGCAQHGLGKATVRWFE  285 (566)
Q Consensus       214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~  285 (566)
                      |+.+|..+.+.+ ..-......|+..|-...+|++|+++-.++.+-+.        ..|.-+...+....+.+.|..++.
T Consensus       126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            888887777644 23344456677888888888888887776643322        234555566666788888888888


Q ss_pred             HHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH
Q 047067          286 KMLRNGIAPNQV-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA  363 (566)
Q Consensus       286 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~  363 (566)
                      +..+.  .|+.+ .-..+.......|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...++.++ ...+..
T Consensus       205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            88874  34433 333455677788899999999988787776666677888888999999999988888776 334444


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH--hcCChhHHHHHHHHHHhCCCccCCceeEEEeCC
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA--SAGRLNDAARARKMMKESGVKKEPACSWVETKN  441 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~  441 (566)
                      ..-..+-..-....-.+.|.....+-+...|+-...|..+---..  ..|++.+...++..|....++..|.+.....+-
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF  362 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGF  362 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCC
Confidence            444444444444555677777777777778876544433332232  346788888899999887777777665544444


Q ss_pred             EEEEE
Q 047067          442 AVHMF  446 (566)
Q Consensus       442 ~~~~f  446 (566)
                      ..|.|
T Consensus       363 ~a~~l  367 (389)
T COG2956         363 TAHTL  367 (389)
T ss_pred             cceee
Confidence            44444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.36  E-value=4e-10  Score=104.58  Aligned_cols=197  Identities=16%  Similarity=0.104  Sum_probs=160.5

Q ss_pred             CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047067          228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT  304 (566)
Q Consensus       228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  304 (566)
                      .....+..+...|...|++++|.+.|++..+   .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            3456667788888999999999999987642   356778888889999999999999999988853 335567778888


Q ss_pred             HHHccCCHHHHHHHHHhHHhhCC-CccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047067          305 ACSHAGLLDEGQGYFALMKKHGV-EPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVEL  381 (566)
Q Consensus       305 a~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~  381 (566)
                      .+...|++++|...+........ ......+..+...+...|++++|...+++. ...| +...+..+...+...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            88999999999999966554322 223456777888999999999999999887 3344 45678888889999999999


Q ss_pred             HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          382 GAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       382 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      |...++++++..|.++..+..++..+...|+.++|..+.+.+..
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999999888888888899999999999999999888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13041 PPR_2: PPR repeat family

Probab=99.35  E-value=2.1e-12  Score=87.06  Aligned_cols=50  Identities=34%  Similarity=0.629  Sum_probs=48.4

Q ss_pred             CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHcc
Q 047067           56 KDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGA  105 (566)
Q Consensus        56 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~  105 (566)
                      ||+++||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            79999999999999999999999999999999999999999999999874

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.34  E-value=5e-11  Score=120.95  Aligned_cols=271  Identities=16%  Similarity=0.162  Sum_probs=196.7

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 047067          181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD  260 (566)
Q Consensus       181 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  260 (566)
                      .++-.|...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+.       .|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            46678888999999999999999999999999999 9999998888999999999999999998887665       678


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-HHhhCCCccHHHHHHHHH
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL-MKKHGVEPEEAHYVTFVD  339 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~-~~~~~~~p~~~~~~~li~  339 (566)
                      ..+|..|..+|.++||... ++..++           -...+...++..|.-..-..++.. -...+.-||..   ..+.
T Consensus        83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il  147 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL  147 (1088)
T ss_pred             hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence            8999999999999999876 333333           122344455666665555555532 23344556654   3566


Q ss_pred             HhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHH
Q 047067          340 LLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRM-HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR  418 (566)
Q Consensus       340 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  418 (566)
                      ...-.|.++.+.+++..+|..........+++-+.. +..++.-....+...+ .| ++.+|..+...-..+|+.+.|..
T Consensus       148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~  225 (1088)
T KOG4318|consen  148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN  225 (1088)
T ss_pred             HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence            677788999999999888643211111113444433 3344444444444444 44 45689999999999999999999


Q ss_pred             HHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccccHHHH
Q 047067          419 ARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGYVPDSSHVLSYADQQER  491 (566)
Q Consensus       419 ~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~p~~~~~~~~~~~~~~  491 (566)
                      +...|+++|+.-.+.+.|-.+.+        .       +....++.+.+.|++.|+.|+..+....+.++-+
T Consensus       226 ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~  283 (1088)
T KOG4318|consen  226 LLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS  283 (1088)
T ss_pred             HHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence            99999999998888888865433        1       1124455778999999999998776554444333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=5.6e-09  Score=97.68  Aligned_cols=292  Identities=14%  Similarity=0.082  Sum_probs=180.3

Q ss_pred             HHHHHHh--CCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 047067           64 LISGYSQ--NDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR  141 (566)
Q Consensus        64 li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~  141 (566)
                      +..+..+  .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+ .+......+.+..-+++..+.-+.......
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~-~an~yL~eaae~~~~~~l~v~ltrarlll~  165 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDED-RANRYLAEAAELAGDDTLAVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHH-HHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence            4444433  577888888877766655333 233445555566666766 666666666665445556666666666666


Q ss_pred             cCCHHHHHHHHHhCC---CCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 047067          142 FDQMDDAWFLFTALE---SKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVH  218 (566)
Q Consensus       142 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~  218 (566)
                      .|+.+.|..-.+++.   .+++..-.....+|.+.|++.+...++.+|.+.|+--|+..-                    
T Consensus       166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~--------------------  225 (400)
T COG3071         166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA--------------------  225 (400)
T ss_pred             CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--------------------
Confidence            677666666555533   345666666666777777777777777777666643332210                    


Q ss_pred             HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047067          219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN  295 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  295 (566)
                              .....+++.+++-....+..+.-...++..+   +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+
T Consensus       226 --------~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~  297 (400)
T COG3071         226 --------RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR  297 (400)
T ss_pred             --------HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence                    0011233444444443444444444555553   33566666777777888888888888888888777666


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047067          296 QVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWGALLGAC  373 (566)
Q Consensus       296 ~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~  373 (566)
                          ...+-.+.+.++.+.-.+.. ......+-.|  ..+.+|...|.+.+.+.+|.+.|+.. ...|+...|+-+..++
T Consensus       298 ----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~  371 (400)
T COG3071         298 ----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL  371 (400)
T ss_pred             ----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence                22223455666666666665 3334444344  56667777777777788777777766 6677777777777777


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 047067          374 RMHKNVELGAYAAERIFE  391 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~  391 (566)
                      .+.|+.++|.+..++.+-
T Consensus       372 ~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         372 DQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHcCChHHHHHHHHHHHH
Confidence            777777777777777664

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.31  E-value=6.2e-09  Score=97.43  Aligned_cols=275  Identities=14%  Similarity=0.130  Sum_probs=211.3

Q ss_pred             cCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 047067          142 FDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVH  218 (566)
Q Consensus       142 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~  218 (566)
                      .|++..|++...+-.+   .-+..|..-+.+-.+.|+.+.+-.++.+.-+.--.++...+.+........|+.+.|..-.
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            5899999999887544   2455666667778889999999999998877533455556666677788899999999999


Q ss_pred             HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067          219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD-----------VVSWNSMLTGCAQHGLGKATVRWFEKM  287 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m  287 (566)
                      .++.+.+ +-+..+......+|.+.|++.....+...+.+..           -.+|+.++.-....+..+.-...|+..
T Consensus       177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            9988887 5566777888999999999999999999986552           247787877777666666666666665


Q ss_pred             HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHH----HHhCCCCCCH
Q 047067          288 LRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKF----IREMPIEPTA  363 (566)
Q Consensus       288 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~p~~  363 (566)
                      ..+ .+-+...-.+++.-+.+.|+.++|.++.....+.+..|+...   ++ ...+-++...=.+.    +...|..|  
T Consensus       256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~~p--  328 (400)
T COG3071         256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPEDP--  328 (400)
T ss_pred             cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence            544 455667777888888999999999999977777777776221   11 22344554443333    33434444  


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ..+.+|...|.+++.+.+|...++.++...|+. ..|..++.++.+.|+..+|.+++++...
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            778899999999999999999999999999976 5899999999999999999999988764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=6.7e-09  Score=94.32  Aligned_cols=285  Identities=16%  Similarity=0.151  Sum_probs=143.7

Q ss_pred             CCCccHHHHHHHHHHHCCCCCChh-HHHHHHHHHccCCCchHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHH
Q 047067           71 NDQPENAIILFSQMLRLGLKPNQF-TLSSVLKASGAGATDDKFGRQVHAFCLKYG-YDW--NVYVGSSLLDMYARFDQMD  146 (566)
Q Consensus        71 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~  146 (566)
                      +.++++|.++|-+|.+.  .|..+ +-.++-+.+.+.|..+ .|..+|+-+.++. +..  -......|..-|...|-+|
T Consensus        48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvD-RAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVD-RAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHH-HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            45677777777777763  22221 2233334444555555 5555555555431 100  1122334555566666677


Q ss_pred             HHHHHHHhCCCCC---hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067          147 DAWFLFTALESKN---EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK  223 (566)
Q Consensus       147 ~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  223 (566)
                      .|+.+|..+.+.+   ..+.-.|+..|-+..+|++|++.-+++.+.+-++..+-.                         
T Consensus       125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------  179 (389)
T COG2956         125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------  179 (389)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH-------------------------
Confidence            7777776665532   234455666666667777777666666655433322110                         


Q ss_pred             hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047067          224 SGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL  300 (566)
Q Consensus       224 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  300 (566)
                            ...|.-|...+.-..+++.|..++.+..+.   .+.+--.+...+...|+++.|++.++...+.+..--..+..
T Consensus       180 ------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~  253 (389)
T COG2956         180 ------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE  253 (389)
T ss_pred             ------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence                  112233333344444555555555554322   22233334455566666666666666666643222234555


Q ss_pred             HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh---c
Q 047067          301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI-REMPIEPTAAVWGALLGACRM---H  376 (566)
Q Consensus       301 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~---~  376 (566)
                      .|..+|.+.|+.+++..++..+.+..  +....-..+.+.-....-.+.|...+ +.+.-+|+...+..|+..-..   .
T Consensus       254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee  331 (389)
T COG2956         254 MLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE  331 (389)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence            56666666666666666663333322  22222233333333333344444433 344556777777777765432   2


Q ss_pred             CCHHHHHHHHHHHHh
Q 047067          377 KNVELGAYAAERIFE  391 (566)
Q Consensus       377 g~~~~a~~~~~~~~~  391 (566)
                      |...+.+.+++.|+.
T Consensus       332 g~~k~sL~~lr~mvg  346 (389)
T COG2956         332 GRAKESLDLLRDMVG  346 (389)
T ss_pred             cchhhhHHHHHHHHH
Confidence            345555556666653

>PF13041 PPR_2: PPR repeat family

Probab=99.30  E-value=7.6e-12  Score=84.36  Aligned_cols=50  Identities=24%  Similarity=0.553  Sum_probs=46.9

Q ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067          259 RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH  308 (566)
Q Consensus       259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  308 (566)
                      ||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68899999999999999999999999999999999999999999999874

>PRK12370 invasion protein regulator; Provisional

Probab=99.29  E-value=1.6e-09  Score=113.64  Aligned_cols=258  Identities=12%  Similarity=0.033  Sum_probs=186.7

Q ss_pred             ChHHHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 047067          159 NEVSWNALIAGHAR-----KSEGEKALRTFSEMLREGFEPTH-FSYSSVFTALA---------STGSLEQGKWVHAHVIK  223 (566)
Q Consensus       159 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~  223 (566)
                      +..+|...+.+-..     .+..++|+++|++..+.  .|+. ..|..+..++.         ..+++++|...++++++
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            55666666666322     23457899999999874  4554 34444444332         23457899999999998


Q ss_pred             hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HH
Q 047067          224 SGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV-TF  299 (566)
Q Consensus       224 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~  299 (566)
                      .. +.+...+..+..++...|++++|...|++..+  | +...|..+...+...|++++|+..+++..+.  .|+.. .+
T Consensus       333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~  409 (553)
T PRK12370        333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG  409 (553)
T ss_pred             cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence            86 55777888888999999999999999999743  3 5678888999999999999999999999984  45532 33


Q ss_pred             HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 047067          300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHK  377 (566)
Q Consensus       300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g  377 (566)
                      ..++..+...|++++|...+........+-+...+..+...|...|+.++|...++++ +..|+. ..++.+...+...|
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS  489 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence            3444456668999999999966655432224555777888899999999999999988 445554 45556666677777


Q ss_pred             CHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          378 NVELGAYAAERIFEL---DPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       378 ~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                        +.|...++++++.   .|.++.   .+..+|+-.|+-+.+... +++.+.|
T Consensus       490 --~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        490 --ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             --HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence              4788878887764   344433   366778888888777766 7777654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.27  E-value=3.3e-09  Score=106.25  Aligned_cols=231  Identities=16%  Similarity=0.177  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CCc-HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C
Q 047067          195 HFSYSSVFTALASTGSLEQGKWVHAHVIKS-----GG-QLV-AFVGNTLVDMYAKSGSIEDAEKVFNRLLK--------R  259 (566)
Q Consensus       195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~  259 (566)
                      ..|...+...|...|+++.|..++++.++.     |. .|. ....+.+...|...+++++|..+|+++..        .
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            356667888899999999999999888765     21 222 22334567789999999999999988731        1


Q ss_pred             ---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHhHHh-hC--
Q 047067          260 ---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN-----GI-APNQ-VTFLCVLTACSHAGLLDEGQGYFALMKK-HG--  326 (566)
Q Consensus       260 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~--  326 (566)
                         -..+++.|..+|.+.|++++|...+++..+-     |. .|.. .-++.+...|...+.+++|..+++...+ ..  
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence               2357788888999999999998888876541     22 2222 3466777788999999999999843322 21  


Q ss_pred             CCcc----HHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067          327 VEPE----EAHYVTFVDLLGRAGLLDRALKFIREM---------PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFEL  392 (566)
Q Consensus       327 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  392 (566)
                      +.++    ..+++.|...|...|++++|.++++++         ...+. ...++.|..+|.+.++.++|.++|.+...+
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            2222    458999999999999999999999877         12233 357788889999999999999999988753


Q ss_pred             ----CCCC---CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          393 ----DPHD---SGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       393 ----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                          +|+.   ..+|..|+-.|...|++++|.++.+....
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                4444   45788999999999999999999988863

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.22  E-value=9.4e-08  Score=96.63  Aligned_cols=409  Identities=15%  Similarity=0.095  Sum_probs=257.7

Q ss_pred             CCCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh-HHH
Q 047067           22 AFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPV---KDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQF-TLS   97 (566)
Q Consensus        22 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~   97 (566)
                      .+..|+.+|..|.-....+|+++.+.+.|++...   .....|+.+-..|.-.|.-..|+.+++.-....-.|+.. .+-
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            4667999999999999999999999999998653   345679999999999999999999998776543335443 344


Q ss_pred             HHHHHHccCCCchHHHHHHHHHHHHh--C--CCCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhCCCC---C
Q 047067           98 SVLKASGAGATDDKFGRQVHAFCLKY--G--YDWNVYVGSSLLDMYARF-----------DQMDDAWFLFTALESK---N  159 (566)
Q Consensus        98 ~ll~a~~~~~~~~~~~~~i~~~~~~~--g--~~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~~---~  159 (566)
                      ..-+.|...-..-+.+...-..++..  +  -......|..+.-+|...           ....++.+.+++..+.   |
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d  477 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD  477 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44445554433322444444444431  1  112233444444445332           2234566666665432   3


Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067          160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM  239 (566)
Q Consensus       160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  239 (566)
                      ...---+.--|+-.++.+.|++..++...-+-.-+...|..+.-.++..+++.+|..+.+.....- +.|......-+..
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i  556 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI  556 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence            322222334466778899999999988887656777888888888888888888888877765431 1111111111111


Q ss_pred             HHhcCCHHHHHHHHHhcC------------------------------C-CCh-hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067          240 YAKSGSIEDAEKVFNRLL------------------------------K-RDV-VSWNSMLTGCAQHGLGKATVRWFEKM  287 (566)
Q Consensus       240 ~~~~g~~~~A~~~~~~~~------------------------------~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m  287 (566)
                      -...++.++|......+.                              + .+. .++..+.. ..+ -+...+..-.. |
T Consensus       557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-L  633 (799)
T KOG4162|consen  557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-L  633 (799)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-c
Confidence            122344444433322210                              0 011 12222111 111 11111110000 1


Q ss_pred             HHcCCCC--C------HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 047067          288 LRNGIAP--N------QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-P  358 (566)
Q Consensus       288 ~~~g~~p--~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~  358 (566)
                      ...-+.|  +      ...|......+...+..++|...+.+.... .+.....|......+...|.+++|.+.|... .
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~  712 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA  712 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence            2111222  2      123445556777888888888777444332 2334567777778889999999999999877 6


Q ss_pred             CCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 047067          359 IEPT-AAVWGALLGACRMHKNVELGAY--AAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACS  435 (566)
Q Consensus       359 ~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s  435 (566)
                      +.|+ +.+..++...+...|+...|..  ++..+++++|.++.+|..|+.++.+.|+.++|...|+...+..- ..|..+
T Consensus       713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~p  791 (799)
T KOG4162|consen  713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVLP  791 (799)
T ss_pred             cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCccc
Confidence            7785 4688999999999999988888  99999999999999999999999999999999999999876432 334444


Q ss_pred             E
Q 047067          436 W  436 (566)
Q Consensus       436 ~  436 (566)
                      |
T Consensus       792 F  792 (799)
T KOG4162|consen  792 F  792 (799)
T ss_pred             c
Confidence            4

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=4.4e-07  Score=85.33  Aligned_cols=366  Identities=11%  Similarity=0.026  Sum_probs=191.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHH-HHHHhCCC-ccHHH--------------HHHHHHHHCCC-
Q 047067           27 IAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALI-SGYSQNDQ-PENAI--------------ILFSQMLRLGL-   89 (566)
Q Consensus        27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li-~~~~~~g~-~~~A~--------------~l~~~m~~~g~-   89 (566)
                      ...-...+..|...++-++|...+.+.+++-...-+.|+ .-+-+.|. -.++.              ..+.-..+.++ 
T Consensus        97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~  176 (564)
T KOG1174|consen   97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN  176 (564)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence            334445677788889999999999888865444444444 33333332 11221              11111222221 


Q ss_pred             --------------CCChhHHHHHHHHHcc--CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067           90 --------------KPNQFTLSSVLKASGA--GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFT  153 (566)
Q Consensus        90 --------------~p~~~t~~~ll~a~~~--~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~  153 (566)
                                    .|+..+...-+.+++.  .++....+..+.-.-...-++.++....++.+.|...|+.++|...|+
T Consensus       177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe  256 (564)
T KOG1174|consen  177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS  256 (564)
T ss_pred             chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence                          1222222222222221  111110222222222223355566667777777777777777777777


Q ss_pred             hCCCCChHHHHHH---HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH
Q 047067          154 ALESKNEVSWNAL---IAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA  230 (566)
Q Consensus       154 ~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  230 (566)
                      +...-|+.+-..|   ...+.+.|+.+....+...+.... +-....|..-+...-..++++.|..+-++.++.. +.+.
T Consensus       257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~  334 (564)
T KOG1174|consen  257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNH  334 (564)
T ss_pred             HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccc
Confidence            6554433322222   223445666666666666554421 1122222222233334556666666666655543 2223


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH
Q 047067          231 FVGNTLVDMYAKSGSIEDAEKVFNRLL--K-RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL-TAC  306 (566)
Q Consensus       231 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~  306 (566)
                      ..+-.-...+...|+.++|.-.|+...  . -+..+|.-|+..|...|++.+|..+-+...+. +..+..+...+. ..|
T Consensus       335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~  413 (564)
T KOG1174|consen  335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL  413 (564)
T ss_pred             hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence            333333355566677777777776542  2 36677777777777777777777666654442 233444444442 222


Q ss_pred             Hc-cCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047067          307 SH-AGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWGALLGACRMHKNVELGA  383 (566)
Q Consensus       307 ~~-~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~  383 (566)
                      .- ...-++|..+++....  +.|+ ....+.+...+...|..+++..++++. ...||....+.|...++..+.+++|.
T Consensus       414 ~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am  491 (564)
T KOG1174|consen  414 FPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM  491 (564)
T ss_pred             ccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence            22 2233556666544332  3344 233445556666777777777777665 44667777777777777777777777


Q ss_pred             HHHHHHHhcCCCCC
Q 047067          384 YAAERIFELDPHDS  397 (566)
Q Consensus       384 ~~~~~~~~~~p~~~  397 (566)
                      ..|..++.++|++.
T Consensus       492 ~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  492 EYYYKALRQDPKSK  505 (564)
T ss_pred             HHHHHHHhcCccch
Confidence            77777777777664

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.21  E-value=8.3e-09  Score=95.69  Aligned_cols=189  Identities=12%  Similarity=0.114  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA  241 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  241 (566)
                      .+..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence            34444444455555555555555444321 1123333344444444444444444444444432 222233334444444


Q ss_pred             hcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067          242 KSGSIEDAEKVFNRLLK-----RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       242 ~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  316 (566)
                      ..|++++|.+.|++...     .....+..+...+...|++++|...|.+..+.. +.+...+..+...+...|++++|.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence            44444444444444321     112233444444445555555555555544421 112233444444444444444444


Q ss_pred             HHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH
Q 047067          317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI  354 (566)
Q Consensus       317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  354 (566)
                      ..++..... .+.+...+..+...+...|+.++|..+.
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~  226 (234)
T TIGR02521       190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG  226 (234)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            444333322 1222233333334444444444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.18  E-value=1.7e-08  Score=101.16  Aligned_cols=235  Identities=16%  Similarity=0.139  Sum_probs=140.4

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------ChH-HHHHHHHHHHhCCChhHHHHHHHHHHHCC---C
Q 047067          126 DWNVYVGSSLLDMYARFDQMDDAWFLFTALESK----------NEV-SWNALIAGHARKSEGEKALRTFSEMLREG---F  191 (566)
Q Consensus       126 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~  191 (566)
                      +.-..+...|..+|...|+++.|..+|....+.          .+. .-+.+...|...+++.+|..+|+++...-   .
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            333445566888888888888888887764431          111 22334455666666666666666654310   0


Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC----------CCCh
Q 047067          192 EPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL----------KRDV  261 (566)
Q Consensus       192 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~  261 (566)
                      -++.                               +.-..+++.|..+|.+.|++++|...+++..          .+.+
T Consensus       276 G~~h-------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v  324 (508)
T KOG1840|consen  276 GEDH-------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV  324 (508)
T ss_pred             CCCC-------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence            0111                               1112233334444555555555444444331          1111


Q ss_pred             -hHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHhHHhhC----C--
Q 047067          262 -VSWNSMLTGCAQHGLGKATVRWFEKMLRN---GIAPN----QVTFLCVLTACSHAGLLDEGQGYFALMKKHG----V--  327 (566)
Q Consensus       262 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~--  327 (566)
                       ...+.++..+...+++++|..++++..+.   -+.++    ..+++.|...|.+.|++++|..+|+......    -  
T Consensus       325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~  404 (508)
T KOG1840|consen  325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK  404 (508)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence             23455566667777777777777765441   12222    3467778888888888888888774333221    1  


Q ss_pred             Cc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          328 EP-EEAHYVTFVDLLGRAGLLDRALKFIREM--------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       328 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      .+ ....++.|...|.+.++..+|.++|.+.        +-.|+. .+|..|...|...|+++.|+++.+.++.
T Consensus       405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            11 2345677778888888888888877765        445666 6899999999999999999999998874

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.14  E-value=1.6e-08  Score=97.14  Aligned_cols=211  Identities=17%  Similarity=0.090  Sum_probs=147.1

Q ss_pred             CChHHHHHHHHHHHHhC-CC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHH
Q 047067          209 GSLEQGKWVHAHVIKSG-GQ--LVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVR  282 (566)
Q Consensus       209 ~~~~~a~~~~~~~~~~~-~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~  282 (566)
                      +..+.+..-+.+++... ..  .....+..+...|.+.|+.++|...|++..   ..+...|+.+...+...|++++|++
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            34556666666666532 12  224557778888999999999999998874   3367889999999999999999999


Q ss_pred             HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CC
Q 047067          283 WFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PI  359 (566)
Q Consensus       283 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~  359 (566)
                      .|++..+  +.|+ ..++..+..++...|++++|.+.|+...+.  .|+..........+...+++++|.+.|++.  ..
T Consensus       120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            9999988  4554 567788888888899999999999666654  343322222223345678899999999665  22


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          360 EPTAAVWGALLGACRMHKNVELGAYAAERIF-------ELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       360 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      .|+...|   .......|+...+ ..++.+.       ++.|..+.+|..++.+|.+.|++++|...|++..+.+
T Consensus       196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3333222   1222334555443 2444443       4456666789999999999999999999999998754

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1e-07  Score=93.13  Aligned_cols=275  Identities=11%  Similarity=0.040  Sum_probs=213.6

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047067          125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKN---EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSV  201 (566)
Q Consensus       125 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l  201 (566)
                      ...++.+.....+-+...+++.+..++++.+.+.|   ...+..-|..+...|+..+-+.+=.+|.+. .+-...+|-++
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV  318 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV  318 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence            34566666777788888999999999999987754   456667788899999999888888888875 34567899999


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCH
Q 047067          202 FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL----KRDVVSWNSMLTGCAQHGLG  277 (566)
Q Consensus       202 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~  277 (566)
                      .--|...|+.++|++.+.+..... +.-...|-.....|+-.|.-++|...+....    ..... +--+..-|.+.+..
T Consensus       319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-SLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHhccH
Confidence            998888999999999999887654 3345577888999999999999988876652    22211 22244567888999


Q ss_pred             HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh--CC----CccHHHHHHHHHHhhhcCCHHHH
Q 047067          278 KATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKH--GV----EPEEAHYVTFVDLLGRAGLLDRA  350 (566)
Q Consensus       278 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~----~p~~~~~~~li~~~~~~g~~~~A  350 (566)
                      +.|.+.|.+...  +-| |+...+-+.-...+.+.+.+|..+|+.....  .+    .....+++.|..+|.+++.+++|
T Consensus       397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            999999999887  455 4666666666666788999999999444311  11    12455788999999999999999


Q ss_pred             HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          351 LKFIREM-PIE-PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       351 ~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      ...+++. ... .|..++.++.-.+...|+++.|...|.+++.+.|++..+-..|.
T Consensus       475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            9999987 333 47789999999999999999999999999999999975555444

>PRK12370 invasion protein regulator; Provisional

Probab=99.13  E-value=1.4e-08  Score=106.52  Aligned_cols=226  Identities=12%  Similarity=-0.039  Sum_probs=169.3

Q ss_pred             CHHHHHHHHHHHhc-----cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh---------cCCHHHHHHHHHhcCC-
Q 047067          194 THFSYSSVFTALAS-----TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK---------SGSIEDAEKVFNRLLK-  258 (566)
Q Consensus       194 d~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-  258 (566)
                      +...|...+.+-..     .+++++|...+++.++.. +.+...+..+..+|..         .+++++|...+++..+ 
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l  333 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL  333 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence            34455555555321     234678999999998875 3345556666655542         3458899999998853 


Q ss_pred             --CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHH
Q 047067          259 --RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYV  335 (566)
Q Consensus       259 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  335 (566)
                        .+..+|..+...+...|++++|+..|++..+.  .|+ ...+..+..++...|++++|...++...+.... +...+.
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~  410 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI  410 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence              36778888989999999999999999999985  454 567888888999999999999999777665432 222333


Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067          336 TFVDLLGRAGLLDRALKFIREM--PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       336 ~li~~~~~~g~~~~A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  412 (566)
                      .+...+...|++++|...+++.  ...|+ ...+..+..++...|+.++|...++++....|.+......+...|...| 
T Consensus       411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  489 (553)
T PRK12370        411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS-  489 (553)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence            3445567789999999999887  22354 4557777788889999999999999998888888878888888888888 


Q ss_pred             hhHHHHHHHHHHh
Q 047067          413 LNDAARARKMMKE  425 (566)
Q Consensus       413 ~~~a~~~~~~m~~  425 (566)
                       +.|...++.+.+
T Consensus       490 -~~a~~~l~~ll~  501 (553)
T PRK12370        490 -ERALPTIREFLE  501 (553)
T ss_pred             -HHHHHHHHHHHH
Confidence             488887777765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=3.1e-09  Score=96.40  Aligned_cols=227  Identities=15%  Similarity=0.106  Sum_probs=159.8

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 047067          164 NALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKS  243 (566)
Q Consensus       164 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  243 (566)
                      +.|...|.+.|.+.+|.+.|+.-...  .|-..||..+-++|.+..+++.|..++.+-++.- +.++....-....+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence            67788899999999999888887775  5666778778888888888888888887776653 44555555566666667


Q ss_pred             CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          244 GSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       244 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      ++.++|.++|+...+   .|+.+...+..+|.-.++++.|+..|+++++.|+. +...|..+.-+|.-.+.++-+..-|.
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            777777777776643   24555555666666677777777777777777655 55666666666666666665555553


Q ss_pred             hHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067          321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG  398 (566)
Q Consensus       321 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  398 (566)
                      .....--                                +|+  ..+|-.|.......||+..|.+.|+-.+..+|++..
T Consensus       383 RAlstat--------------------------------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e  430 (478)
T KOG1129|consen  383 RALSTAT--------------------------------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE  430 (478)
T ss_pred             HHHhhcc--------------------------------CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence            3322111                                232  246666666667778888888888888888888888


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          399 PHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       399 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +++.|+-.-.+.|+.++|+.++....+.
T Consensus       431 alnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  431 ALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            8888888888888888888888877664

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=7.6e-09  Score=93.94  Aligned_cols=195  Identities=13%  Similarity=0.086  Sum_probs=162.1

Q ss_pred             cHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Q 047067          229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL-CVLTA  305 (566)
Q Consensus       229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a  305 (566)
                      |-.--+.+..+|.+.|.+.+|.+.|+.-.  .+-+.+|-.|-..|.+..+++.|+.+|.+-++  ..|-.+||. ...+.
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi  299 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI  299 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence            33334678899999999999999998874  56788999999999999999999999999888  466666664 45577


Q ss_pred             HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 047067          306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMHKNVELG  382 (566)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a  382 (566)
                      +...++.++|.++++...+.. +.+++...++...|.-.++++-|+.+++++   + .-++..|+.+.-+|.-.++++.+
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhh
Confidence            788899999999997776654 456777888888999999999999999976   5 34778899999999999999999


Q ss_pred             HHHHHHHHhcC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          383 AYAAERIFELD--PH-DSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       383 ~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      +.-|++++...  |+ ...+|..|+.+....|++..|.+.|+.....+
T Consensus       378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d  425 (478)
T KOG1129|consen  378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD  425 (478)
T ss_pred             HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence            99999998753  33 34588899999999999999999999887543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=1.6e-07  Score=90.17  Aligned_cols=218  Identities=10%  Similarity=-0.002  Sum_probs=142.4

Q ss_pred             CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 047067          174 SEGEKALRTFSEMLREG-FEPT--HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE  250 (566)
Q Consensus       174 g~~~~A~~~~~~m~~~g-~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  250 (566)
                      +..+.++.-+.++.... ..|+  ...|......+...|+.++|...|.+.++.. +.+...++.+...|...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            45566666666666432 2222  2345566666777788888877777777765 456777888888888888888888


Q ss_pred             HHHHhcCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC
Q 047067          251 KVFNRLLK--R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV  327 (566)
Q Consensus       251 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  327 (566)
                      ..|++..+  | +..+|..+...+...|++++|++.|++..+.  .|+..........+...++.++|...|...... .
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~  195 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L  195 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence            88888743  3 4677888888888899999999999998874  455432222222344567889999988443322 2


Q ss_pred             CccHHHHHHHHHHhhhcCCHH--HHHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067          328 EPEEAHYVTFVDLLGRAGLLD--RALKFIREM-P----IEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG  398 (566)
Q Consensus       328 ~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  398 (566)
                      .|+...+ .++..+  .|+..  ++.+.+.+. .    +.| ....|..+...+...|+.++|+..|+++++.+|.+..
T Consensus       196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~  271 (296)
T PRK11189        196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV  271 (296)
T ss_pred             CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence            3332222 233333  34443  333333321 1    112 2357889999999999999999999999999975543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.02  E-value=1.1e-05  Score=80.44  Aligned_cols=413  Identities=11%  Similarity=0.116  Sum_probs=226.0

Q ss_pred             CcHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHH
Q 047067            7 KLKEARIVHAHILGSA-FKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQML   85 (566)
Q Consensus         7 ~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~   85 (566)
                      ++-.-+..|++.++.= +......|...+......|-++-+.+++++..+-++..-+--|..++..+++++|-+.+...+
T Consensus       117 ~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vl  196 (835)
T KOG2047|consen  117 LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVL  196 (835)
T ss_pred             hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence            3334444455444431 111223444444444445555555555555544444445555555556666666655555544


Q ss_pred             HCC------CCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCC--CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047067           86 RLG------LKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGY--DWN--VYVGSSLLDMYARFDQMDDAWFLFTAL  155 (566)
Q Consensus        86 ~~g------~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~  155 (566)
                      ...      .+.+...|.-+-...++..+.. ....+-. +++.|+  -+|  -..|++|.+-|.+.|.++.|..+|++.
T Consensus       197 n~d~f~sk~gkSn~qlw~elcdlis~~p~~~-~slnvda-iiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea  274 (835)
T KOG2047|consen  197 NQDEFVSKKGKSNHQLWLELCDLISQNPDKV-QSLNVDA-IIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA  274 (835)
T ss_pred             CchhhhhhcccchhhHHHHHHHHHHhCcchh-cccCHHH-HHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            221      1222233333333333322222 1111111 122222  122  346889999999999999999999885


Q ss_pred             CCC--ChHHHHHHHHHHHhC----------------CC------hhHHHHHHHHHHHCCC-----------CCCHHHHHH
Q 047067          156 ESK--NEVSWNALIAGHARK----------------SE------GEKALRTFSEMLREGF-----------EPTHFSYSS  200 (566)
Q Consensus       156 ~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~-----------~pd~~t~~~  200 (566)
                      ...  .+.-++.+-.+|++-                ++      ++-.+.-|+.+...+.           +-+..+|..
T Consensus       275 i~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k  354 (835)
T KOG2047|consen  275 IQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK  354 (835)
T ss_pred             HHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence            542  222233333333321                11      1222333333332210           111122222


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhC-----CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-------hHHHHHH
Q 047067          201 VFTALASTGSLEQGKWVHAHVIKSG-----GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV-------VSWNSML  268 (566)
Q Consensus       201 ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li  268 (566)
                      -..  ...|+..+-...+.++++.-     .......|..+.+.|-..|+++.|+.+|++..+-+-       .+|-.-.
T Consensus       355 RV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa  432 (835)
T KOG2047|consen  355 RVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA  432 (835)
T ss_pred             hhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence            111  22345556666777776541     223345778899999999999999999999865432       3555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCC----------C-CH------HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH
Q 047067          269 TGCAQHGLGKATVRWFEKMLRNGIA----------P-NQ------VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE  331 (566)
Q Consensus       269 ~~~~~~g~~~~A~~~~~~m~~~g~~----------p-~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~  331 (566)
                      ..=.++.+++.|+.+.+......-.          | ..      ..|...+..-...|-++....+++.+.+..+....
T Consensus       433 emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq  512 (835)
T KOG2047|consen  433 EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ  512 (835)
T ss_pred             HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH
Confidence            6666788899999988877542111          1 11      12333344444567788888888777776654322


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHhC-C-C-CCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCc--hHHH
Q 047067          332 AHYVTFVDLLGRAGLLDRALKFIREM-P-I-EPTA-AVWGALLGACRM---HKNVELGAYAAERIFELDPHDSG--PHIL  402 (566)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~-~-~p~~-~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~--~~~~  402 (566)
                      ..- .....+-...-++++.+++++- + + -|++ .+|++.+.-+..   ...++.|..+|+++++.-|....  .|..
T Consensus       513 ii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLl  591 (835)
T KOG2047|consen  513 III-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLL  591 (835)
T ss_pred             HHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            222 2233455667789999999986 2 2 3565 589998877543   24689999999999998774322  2333


Q ss_pred             HHHHHHhcCChhHHHHHHHHHH
Q 047067          403 LANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       403 l~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      .+..--+-|.-..|..++++..
T Consensus       592 YA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  592 YAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            3333344577777888888754

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=5.6e-07  Score=86.46  Aligned_cols=342  Identities=13%  Similarity=0.054  Sum_probs=209.6

Q ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCc-hhHHHHHHHH
Q 047067           61 WTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWN-VYVGSSLLDM  138 (566)
Q Consensus        61 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~li~~  138 (566)
                      +-....-|.++|.+++|++.|.+.++  +.|| ...|...-.+|...|++. ...+--...++  +.|+ +-.+..-..+
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~-~Vied~TkALE--l~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWE-KVIEDCTKALE--LNPDYVKALLRRASA  192 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHH-HHHHHHHHHhh--cCcHHHHHHHHHHHH
Confidence            33445567788999999999999887  4788 555666666677778777 44433333333  3444 3345555667


Q ss_pred             HHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH--------HH-CC--CCCCHHHHHHHHHHHhc
Q 047067          139 YARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEM--------LR-EG--FEPTHFSYSSVFTALAS  207 (566)
Q Consensus       139 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~-~g--~~pd~~t~~~ll~~~~~  207 (566)
                      +-..|++++|+.         .+|-..+..+|....-.-.+.+++++.        .. .+  +-|......+.+..+-.
T Consensus       193 ~E~lg~~~eal~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~  263 (606)
T KOG0547|consen  193 HEQLGKFDEALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA  263 (606)
T ss_pred             HHhhccHHHHHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence            777788777753         223334444444333333333333321        22 12  33444444444433321


Q ss_pred             cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHhc-------CCC---Ch------hHHHHHHHH
Q 047067          208 TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKS-GSIEDAEKVFNRL-------LKR---DV------VSWNSMLTG  270 (566)
Q Consensus       208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~~---~~------~~~~~li~~  270 (566)
                      .-..        .+...+-..|...-..+=..|... ..+..|...+.+-       ...   |.      .+.+.-..-
T Consensus       264 ~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF  335 (606)
T KOG0547|consen  264 DPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF  335 (606)
T ss_pred             cccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence            1000        000000001111111111111110 1122232222211       111   11      122222222


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHH
Q 047067          271 CAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRA  350 (566)
Q Consensus       271 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  350 (566)
                      +.-.|+.-.|.+-|+..+.....++.. |.-+...|....+.++.++.|.+..+.+ +-+..+|..-..++.-.+++++|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence            445788999999999999864443332 7777778999999999999998877654 33566787788888889999999


Q ss_pred             HHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          351 LKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       351 ~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ..=|++. .+.|+ ...|-.+.-+.-+.+.+++++..|++..+.-|..+..|+..+.++...++++.|.+.++..++.
T Consensus       414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            9999988 66774 4677777777667789999999999999999999999999999999999999999999999864

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.99  E-value=8.2e-06  Score=83.17  Aligned_cols=406  Identities=15%  Similarity=0.130  Sum_probs=247.8

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcc--h-HHHHHHHHHhC-----CCcc
Q 047067            4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMV--T-WTALISGYSQN-----DQPE   75 (566)
Q Consensus         4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~--~-~~~li~~~~~~-----g~~~   75 (566)
                      ..|+.+.|...+..-.+. +.....+.......|.+.|+.++|..++..+..+|+.  . |..+..+....     .+.+
T Consensus        16 e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~   94 (517)
T PF12569_consen   16 EAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVE   94 (517)
T ss_pred             HCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHH
Confidence            357777777776554332 2333555666778888888988998888888744333  3 34444444222     2456


Q ss_pred             HHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047067           76 NAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTAL  155 (566)
Q Consensus        76 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~  155 (566)
                      ...++|+++...  -|.......+.-.+.....+...+........+.|+|   .+++.|-..|......+-..+++...
T Consensus        95 ~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~  169 (517)
T PF12569_consen   95 KLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEY  169 (517)
T ss_pred             HHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHH
Confidence            667788877654  2444433333222333333333555555666666754   46677777777655555555555443


Q ss_pred             C------------------CCChH--HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHH
Q 047067          156 E------------------SKNEV--SWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGSLEQG  214 (566)
Q Consensus       156 ~------------------~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a  214 (566)
                      .                  .|...  +|.-+...|...|++++|+++.++.+..  .|+ ...|..-.+.+-+.|++.+|
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~A  247 (517)
T PF12569_consen  170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEA  247 (517)
T ss_pred             HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence            1                  12232  4466678899999999999999999886  455 56788888999999999999


Q ss_pred             HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----------hHH--HHHHHHHHHcCCHHHHHH
Q 047067          215 KWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV----------VSW--NSMLTGCAQHGLGKATVR  282 (566)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~  282 (566)
                      ...++.+.+.. ..|..+-+-.+..+.++|++++|.+++.....++.          ..|  .....+|.+.|++..|+.
T Consensus       248 a~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk  326 (517)
T PF12569_consen  248 AEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK  326 (517)
T ss_pred             HHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999887 56788888889999999999999999988765541          134  345678999999999998


Q ss_pred             HHHHHHHc--CC-------------CCCHHHHHHHHHHHHccCC-------HHHHHHHHHhHHhhCCCc-----------
Q 047067          283 WFEKMLRN--GI-------------APNQVTFLCVLTACSHAGL-------LDEGQGYFALMKKHGVEP-----------  329 (566)
Q Consensus       283 ~~~~m~~~--g~-------------~p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~p-----------  329 (566)
                      .|....+.  .+             +.+..+|..++...-+...       ...|.+++-.+.+.....           
T Consensus       327 ~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~  406 (517)
T PF12569_consen  327 RFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNEN  406 (517)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccccccccc
Confidence            77766542  01             1223344444443222111       223444442222211100           


Q ss_pred             -cHHHHHHHHHHh---hhcCCHHHHHHHHH-----------hC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067          330 -EEAHYVTFVDLL---GRAGLLDRALKFIR-----------EM------PIEPTAAVWGALLGACRMHKNVELGAYAAER  388 (566)
Q Consensus       330 -~~~~~~~li~~~---~~~g~~~~A~~~~~-----------~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  388 (566)
                       +..--..+-.-.   .+...-+++...-.           ..      +..||+.- ..|+   ....-+++|.++++-
T Consensus       407 ~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~p  482 (517)
T PF12569_consen  407 MSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKP  482 (517)
T ss_pred             CChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHH
Confidence             000000000000   11111111111110           00      11222211 1111   233457889999999


Q ss_pred             HHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067          389 IFELDPHDSGPHILLANIYASAGRLNDAARARKM  422 (566)
Q Consensus       389 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  422 (566)
                      +.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus       483 L~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k  516 (517)
T PF12569_consen  483 LLELAPDNIETHLLAFEVYLRKGKYLLALQALKK  516 (517)
T ss_pred             HHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence            9999999999999999999999999988877654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.99  E-value=6.9e-08  Score=83.97  Aligned_cols=162  Identities=16%  Similarity=0.111  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067          264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG  342 (566)
Q Consensus       264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  342 (566)
                      .-.|.-+|.+.|+...|..-+++.++.  .|+ ..++..+...|.+.|..+.|.+.|+...... +-+..+.|...--+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            445667788888888888888888884  444 5678888888888888888888886655433 234567788888889


Q ss_pred             hcCCHHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHH
Q 047067          343 RAGLLDRALKFIREM---PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR  418 (566)
Q Consensus       343 ~~g~~~~A~~~~~~~---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  418 (566)
                      ..|++++|...|++.   |.-|. ..+|..+..+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++-.|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            999999999999988   32332 36888998889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCC
Q 047067          419 ARKMMKESGV  428 (566)
Q Consensus       419 ~~~~m~~~g~  428 (566)
                      .++....++.
T Consensus       195 ~~~~~~~~~~  204 (250)
T COG3063         195 YLERYQQRGG  204 (250)
T ss_pred             HHHHHHhccc
Confidence            9999887665

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=2.4e-08  Score=97.75  Aligned_cols=218  Identities=16%  Similarity=0.157  Sum_probs=174.4

Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHH
Q 047067          205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATV  281 (566)
Q Consensus       205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~  281 (566)
                      +.+.|++.+|.-.|+..++.. +.+...|.-|....+..++-..|+..+++..+   .|..+.-+|.-.|...|.-.+|+
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence            356788888888888888876 66788888899999999998889988888743   36677888888899999999999


Q ss_pred             HHHHHHHHcCCC-----C---CHHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHH
Q 047067          282 RWFEKMLRNGIA-----P---NQVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALK  352 (566)
Q Consensus       282 ~~~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  352 (566)
                      ..++.-+....+     +   +..+-..  ..+.....+....++| +.....+..+|..++..|.-.|--.|.+++|.+
T Consensus       374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            999887653211     0   0000000  1222223344556666 777777766788889999999999999999999


Q ss_pred             HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          353 FIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       353 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .|+.. .++| |...||-|...++...+.++|+..|++++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus       452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99988 6778 5679999999999999999999999999999999999999999999999999999999877764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.8e-05  Score=76.91  Aligned_cols=280  Identities=11%  Similarity=0.075  Sum_probs=159.7

Q ss_pred             HHHHhcCCHHHHHHHHHhC--------CCCC-----h-----HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 047067          137 DMYARFDQMDDAWFLFTAL--------ESKN-----E-----VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSY  198 (566)
Q Consensus       137 ~~y~~~g~~~~A~~~f~~~--------~~~~-----~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~  198 (566)
                      ..+...|++.+|+++++..        .+.|     .     ..--.|...+...|+-++|.+++....... .+|....
T Consensus       183 c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~  261 (652)
T KOG2376|consen  183 CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSL  261 (652)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHH
Confidence            3456677777777777665        1111     1     112234445666777777777777777664 3444322


Q ss_pred             HHHH---HHHhccCChHH--HHHHHHHH-----------HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-h
Q 047067          199 SSVF---TALASTGSLEQ--GKWVHAHV-----------IKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD-V  261 (566)
Q Consensus       199 ~~ll---~~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~  261 (566)
                      ....   .+...-.++-.  ....++..           +...-......-+.++.+|.  +..+.+.++-...+... .
T Consensus       262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~  339 (652)
T KOG2376|consen  262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPE  339 (652)
T ss_pred             HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCch
Confidence            2221   12222111111  11111110           00000111112234444443  44556666666665433 3


Q ss_pred             hHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------hHHhhCCCccH
Q 047067          262 VSWNSMLTGCA--QHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA--------LMKKHGVEPEE  331 (566)
Q Consensus       262 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~p~~  331 (566)
                      ..+.+++....  +...+.+|.+++...-+....-..+.....+......|+++.|.+++.        ...+.+..|. 
T Consensus       340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~-  418 (652)
T KOG2376|consen  340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG-  418 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-
Confidence            44455544432  223567778877777664222223455556667778999999999997        4445554554 


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047067          332 AHYVTFVDLLGRAGLLDRALKFIREM--------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHIL  402 (566)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  402 (566)
                       +..+++.+|.+.++-+.|..++.+.        .-.+.. .+|.-+..--.++|+.++|..+++++++.+|++..+...
T Consensus       419 -~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~  497 (652)
T KOG2376|consen  419 -TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ  497 (652)
T ss_pred             -HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH
Confidence             4556788888888877777766654        112222 344444455567899999999999999999999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHH
Q 047067          403 LANIYASAGRLNDAARARKM  422 (566)
Q Consensus       403 l~~~~~~~g~~~~a~~~~~~  422 (566)
                      +..+|++. +.+.|..+-+.
T Consensus       498 lV~a~~~~-d~eka~~l~k~  516 (652)
T KOG2376|consen  498 LVTAYARL-DPEKAESLSKK  516 (652)
T ss_pred             HHHHHHhc-CHHHHHHHhhc
Confidence            99999976 45566655443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.2e-05  Score=75.94  Aligned_cols=260  Identities=13%  Similarity=0.039  Sum_probs=177.6

Q ss_pred             ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067          159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYS-SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV  237 (566)
Q Consensus       159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  237 (566)
                      |+.....+...+...|+.++|+..|++....  .|+..+-- .-.-.+.+.|+++....+...+.... ..+...|-.-.
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~  307 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA  307 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence            6777888888888889999998888887653  34433211 11122345677777766666665432 11122222223


Q ss_pred             HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 047067          238 DMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLD  313 (566)
Q Consensus       238 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~  313 (566)
                      .......+++.|+.+-++.++.   ++..+-.-...+.+.|++++|.-.|+..+.  +.| +...|..|+.+|.-.|.+.
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence            3344556777888777776543   444554445667888999999999998887  454 5678999999999999999


Q ss_pred             HHHHHH-HhHHhhCCCccHHHHHHHH-HHhh-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067          314 EGQGYF-ALMKKHGVEPEEAHYVTFV-DLLG-RAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAER  388 (566)
Q Consensus       314 ~a~~~~-~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~  388 (566)
                      +|.-.- ..+..  ++.+..+...+. ..+. .-.--++|.+++++. .++|+- ...+.+...|...|..+.++.++++
T Consensus       386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK  463 (564)
T ss_pred             HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            987766 33332  223444443331 2221 222346788888877 777875 4667777888999999999999999


Q ss_pred             HHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          389 IFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       389 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      .+...|++ ..++.|++++...+.+.+|...|......
T Consensus       464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            99988887 48889999999999999999999887653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.93  E-value=5.8e-06  Score=82.44  Aligned_cols=423  Identities=13%  Similarity=0.093  Sum_probs=207.9

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067            5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILF   81 (566)
Q Consensus         5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~   81 (566)
                      .++...+.+..+.+++ +++....+.....--+...|+-++|......-.   .++.+.|..+.-.+....++++|++.|
T Consensus        20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY   98 (700)
T ss_pred             HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence            3455666677777776 333334444333333445789999988887655   345678999988888899999999999


Q ss_pred             HHHHHCCCCCChh-HHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---
Q 047067           82 SQMLRLGLKPNQF-TLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---  157 (566)
Q Consensus        82 ~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---  157 (566)
                      ......  .||.. .+.-+--.-++.++.+ ..........+. .+.....|..+..++.-.|+...|..+.++..+   
T Consensus        99 ~nAl~~--~~dN~qilrDlslLQ~QmRd~~-~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~  174 (700)
T KOG1156|consen   99 RNALKI--EKDNLQILRDLSLLQIQMRDYE-GYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN  174 (700)
T ss_pred             HHHHhc--CCCcHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            998874  45543 3322222222333333 111111111111 011223344444444444444444444443321   


Q ss_pred             --CChHHHHHHH------HHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 047067          158 --KNEVSWNALI------AGHARKSEGEKALRTFSEMLREGFEPTHFSY-SSVFTALASTGSLEQGKWVHAHVIKSGGQL  228 (566)
Q Consensus       158 --~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  228 (566)
                        ++...+.-..      ......|..++|++-+..-...  ..|...+ ..-...+.+.+++++|..++..++... +.
T Consensus       175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pd  251 (700)
T KOG1156|consen  175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PD  251 (700)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-ch
Confidence              1222221111      1223344444444443332211  1121111 122233344445555555554444432 12


Q ss_pred             cHhHHHHHHHHHHhcCCHHHHH-HHHHhcCCC---ChhHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067          229 VAFVGNTLVDMYAKSGSIEDAE-KVFNRLLKR---DVVSWNSMLTGCAQ-HGLGKATVRWFEKMLRNGIAPNQVTFLCVL  303 (566)
Q Consensus       229 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  303 (566)
                      +...|..+..++.+--+.-++. .+|....+.   ....-. +--.... ..-.+..-.++..+.+.|++|-   |..+.
T Consensus       252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R-lplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~  327 (700)
T KOG1156|consen  252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR-LPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLR  327 (700)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh-ccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhH
Confidence            2222222223332222222222 333322111   000000 0000011 1112223334455555565543   33333


Q ss_pred             HHHHccCCHHHHHHHH----HhHHhhC----------CCccHHH--HHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-H
Q 047067          304 TACSHAGLLDEGQGYF----ALMKKHG----------VEPEEAH--YVTFVDLLGRAGLLDRALKFIREM-PIEPTAA-V  365 (566)
Q Consensus       304 ~a~~~~g~~~~a~~~~----~~~~~~~----------~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~  365 (566)
                      +.+-.-...+--.++.    ..+...|          -+|....  +-.++..|-+.|+++.|..+++.. +-.|+.+ .
T Consensus       328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl  407 (700)
T KOG1156|consen  328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL  407 (700)
T ss_pred             HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence            3332222222111111    1111111          1444443  345678888999999999999887 5466654 4


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-----cCCceeEEEe
Q 047067          366 WGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK-----KEPACSWVET  439 (566)
Q Consensus       366 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~s~~~~  439 (566)
                      |..=...+...|++++|...++++.+++-.|...-.--+.-..++.+.++|.++.....+.|..     .+..|.|..+
T Consensus       408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~  486 (700)
T KOG1156|consen  408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL  486 (700)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence            5455567788899999999999999998777544445666667889999999998888776642     1235777544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.89  E-value=3.1e-05  Score=77.22  Aligned_cols=173  Identities=17%  Similarity=0.167  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHccCC-----CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHH
Q 047067           27 IAMQNTILNAYAKCGCLDEARKLFDEMP-----VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLK  101 (566)
Q Consensus        27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  101 (566)
                      +..|-..+....++|++..-+..|+...     ......|...|.-....|-++-++.+|++.++.  .|..  -.--+.
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie  177 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIE  177 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHH
Confidence            3445555666667788888888887643     224456888888888888888999999988863  3443  555666


Q ss_pred             HHccCCCchHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCCHH---HHHHHHHhCCCC--C--hHHHHHHHH
Q 047067          102 ASGAGATDDKFGRQVHAFCLKY------GYDWNVYVGSSLLDMYARFDQMD---DAWFLFTALESK--N--EVSWNALIA  168 (566)
Q Consensus       102 a~~~~~~~~~~~~~i~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~  168 (566)
                      -++..++++ .+.+.+..++..      ..+.+...|.-+-+..++.-+.-   ....+++.+..+  |  ...|++|..
T Consensus       178 ~L~~~d~~~-eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd  256 (835)
T KOG2047|consen  178 YLAKSDRLD-EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD  256 (835)
T ss_pred             HHHhccchH-HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence            677788888 555555544422      12556667777777766654432   244556655543  3  347999999


Q ss_pred             HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047067          169 GHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALA  206 (566)
Q Consensus       169 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~  206 (566)
                      -|.+.|.+++|-.+|++....-  .+..-|+.+.++|+
T Consensus       257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya  292 (835)
T KOG2047|consen  257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA  292 (835)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence            9999999999999998877642  23334455555554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=9.5e-07  Score=86.10  Aligned_cols=394  Identities=11%  Similarity=0.037  Sum_probs=237.4

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC--CC-CcchHHHHHHHHHhCCCccHHHHH
Q 047067            4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP--VK-DMVTWTALISGYSQNDQPENAIIL   80 (566)
Q Consensus         4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l   80 (566)
                      ..|+++.|...|...+... ++|...|..-...|++.|++++|.+=-.+-.  .| -...|+-...++.-.|++++|+.-
T Consensus        14 s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a   92 (539)
T KOG0548|consen   14 SSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA   92 (539)
T ss_pred             ccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence            5688999999999888876 4588888888899999999988887555443  22 345788888888888999999999


Q ss_pred             HHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHHHHHHHh
Q 047067           81 FSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLL-----DMYARFDQMDDAWFLFTA  154 (566)
Q Consensus        81 ~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li-----~~y~~~g~~~~A~~~f~~  154 (566)
                      |.+=++.  .|+ ...++.+..+..  .+.  .+         ...-.++..+..|.     +.+...-.+..-++.+..
T Consensus        93 y~~GL~~--d~~n~~L~~gl~~a~~--~~~--~~---------~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~  157 (539)
T KOG0548|consen   93 YSEGLEK--DPSNKQLKTGLAQAYL--EDY--AA---------DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK  157 (539)
T ss_pred             HHHHhhc--CCchHHHHHhHHHhhh--HHH--Hh---------hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence            9887764  344 444555555541  000  00         00011122222111     111111111111111111


Q ss_pred             CCCCChHH---HHHHHHHHHhCCChhHH-HHHHHHHH-HCCCCC----------------------CHHHHHHHHHHHhc
Q 047067          155 LESKNEVS---WNALIAGHARKSEGEKA-LRTFSEML-REGFEP----------------------THFSYSSVFTALAS  207 (566)
Q Consensus       155 ~~~~~~~~---~~~li~~~~~~g~~~~A-~~~~~~m~-~~g~~p----------------------d~~t~~~ll~~~~~  207 (566)
                      -+. ++-.   ...++.+.......+.- +..-..+. ..+..|                      -..-...+.++.-+
T Consensus       158 ~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk  236 (539)
T KOG0548|consen  158 NPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK  236 (539)
T ss_pred             CcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence            111 0000   00011111100000000 00000000 000011                      01124456677777


Q ss_pred             cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----------HHHHHHHHHHHcCCH
Q 047067          208 TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVV----------SWNSMLTGCAQHGLG  277 (566)
Q Consensus       208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~  277 (566)
                      ..+++.+.+-+...+...  .+..-++....+|...|.+.++...-+...+..-.          +...+..+|.+.+++
T Consensus       237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~  314 (539)
T KOG0548|consen  237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY  314 (539)
T ss_pred             hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence            778888888888888776  56666777888888888888877766655433211          222344567778889


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHH-HHHHHHHHhhhcCCHHHHHHHHHh
Q 047067          278 KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEA-HYVTFVDLLGRAGLLDRALKFIRE  356 (566)
Q Consensus       278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~  356 (566)
                      +.|+..|.+.+.....|+..+         +....+++........  -+.|... -...=...+.+.|++.+|...|.+
T Consensus       315 ~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  315 EGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA--YINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             HHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999998777655554322         2233344444332222  1233321 111125567788999999999988


Q ss_pred             C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          357 M-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       357 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      + ...| |...|.....+|...|++..|+.-.+..++++|+....|..-+.++....+|+.|.+.|++..+..
T Consensus       384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8 4456 567889999999999999999999999999999999999999999999999999999999887644

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.87  E-value=1.7e-06  Score=88.07  Aligned_cols=158  Identities=17%  Similarity=0.218  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhh--------------CCCccHH--HHHHHHHHhh
Q 047067          279 ATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH--------------GVEPEEA--HYVTFVDLLG  342 (566)
Q Consensus       279 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--------------~~~p~~~--~~~~li~~~~  342 (566)
                      .+...+..+...|+++   +|+.|-..|......+-..+++......              .-+|+..  ++.-+...|-
T Consensus       129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd  205 (517)
T PF12569_consen  129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD  205 (517)
T ss_pred             HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence            3445566667777653   4555555555444444444444222111              1134443  3355678888


Q ss_pred             hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 047067          343 RAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR  420 (566)
Q Consensus       343 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  420 (566)
                      ..|++++|++++++. ...|+ +..|..-...+...|++++|.+.++.+.++++.|.....-.+..+.++|+.++|.++.
T Consensus       206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~  285 (517)
T PF12569_consen  206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA  285 (517)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999977 55676 4577777888999999999999999999999999888888888889999999999999


Q ss_pred             HHHHhCCCccCC-----ceeEEEe
Q 047067          421 KMMKESGVKKEP-----ACSWVET  439 (566)
Q Consensus       421 ~~m~~~g~~~~~-----~~s~~~~  439 (566)
                      ......+..+..     .|.|.++
T Consensus       286 ~~Ftr~~~~~~~~L~~mQc~Wf~~  309 (517)
T PF12569_consen  286 SLFTREDVDPLSNLNDMQCMWFET  309 (517)
T ss_pred             HhhcCCCCCcccCHHHHHHHHHHH
Confidence            988776653332     4567544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=2.5e-06  Score=78.73  Aligned_cols=403  Identities=12%  Similarity=0.030  Sum_probs=231.9

Q ss_pred             CCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHH
Q 047067            6 KKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFS   82 (566)
Q Consensus         6 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~   82 (566)
                      +|+..|..+.+.-...+-+....+--=+...|...|++++|..++..+.   .++...|-.|.-.+.-.|.+.+|..+-.
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~  115 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE  115 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence            4555566555554433211111111113445566788888888777554   3345556666666666677777766644


Q ss_pred             HHHHCCCCCChhHHH-HHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--C
Q 047067           83 QMLRLGLKPNQFTLS-SVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK--N  159 (566)
Q Consensus        83 ~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~  159 (566)
                      ..      |+..... .++....+.++-. ....+|+.+...     ..-.-+|.++....-.+++|.+++.++...  +
T Consensus       116 ka------~k~pL~~RLlfhlahklndEk-~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  116 KA------PKTPLCIRLLFHLAHKLNDEK-RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             hC------CCChHHHHHHHHHHHHhCcHH-HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            32      3333333 3333344555554 555555554432     233455666666666789999999998764  3


Q ss_pred             hHHHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChH--HHHH----------HHHHHH
Q 047067          160 EVSWNA-LIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS----TGSLE--QGKW----------VHAHVI  222 (566)
Q Consensus       160 ~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~--~a~~----------~~~~~~  222 (566)
                      -...|. |.-.|.+..-++-+.++++-..+.  -||. |+..=+.+|..    .|+..  +-..          ..+.+.
T Consensus       184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~  260 (557)
T KOG3785|consen  184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC  260 (557)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence            344444 345677888888888888777664  3443 22222333321    11111  1111          112222


Q ss_pred             HhCC------CCc-----------HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC-------HH
Q 047067          223 KSGG------QLV-----------AFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGL-------GK  278 (566)
Q Consensus       223 ~~~~------~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~  278 (566)
                      +.++      +--           +..--.|+--|.+.+++++|..+.+++...++.-|-.-.-.++..|+       ..
T Consensus       261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlK  340 (557)
T KOG3785|consen  261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLK  340 (557)
T ss_pred             HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence            2210      000           11112344558889999999999988866655544333333444443       33


Q ss_pred             HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          279 ATVRWFEKMLRNGIAPNQV-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       279 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      -|.+.|+-.-+.+..-|.. ---++.+++.-...+++..-++.....+=...|...+| +..+++..|.+.+|+++|-++
T Consensus       341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~i  419 (557)
T KOG3785|consen  341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRI  419 (557)
T ss_pred             HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhh
Confidence            4555555444444433322 12334444555567888888777666665555665555 788999999999999999888


Q ss_pred             C-CC-CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcC-CCCC-chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          358 P-IE-PTAAVWGALL-GACRMHKNVELGAYAAERIFELD-PHDS-GPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       358 ~-~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      . .+ .|..+|-+++ .+|.++++++.|..+   +++.+ |.+. .....+++-|.+++.+--|.+.|+.+....
T Consensus       420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD  491 (557)
T KOG3785|consen  420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD  491 (557)
T ss_pred             cChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence            2 12 3566776555 667888999887554   45544 4333 344567888999999999999999887644

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.86  E-value=1.8e-06  Score=75.30  Aligned_cols=201  Identities=12%  Similarity=0.040  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA  241 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  241 (566)
                      +...|..+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|+++++.. +.+..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            44555566666666666666666666643 2233455555555555555555555555555543 333444444444444


Q ss_pred             hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      ..|++++|...|+                               +......-|. ..||..+.-+..+.|+.+.|..+|+
T Consensus       115 ~qg~~~eA~q~F~-------------------------------~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~  163 (250)
T COG3063         115 AQGRPEEAMQQFE-------------------------------RALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK  163 (250)
T ss_pred             hCCChHHHHHHHH-------------------------------HHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence            4455554444444                               4443211111 2344444444444444444444443


Q ss_pred             hHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067          321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHD  396 (566)
Q Consensus       321 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  396 (566)
                      ...+... -.......+.+...+.|++-.|..+++..  ...++..+.--.|..-...||.+.+-+.-.++....|..
T Consensus       164 raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         164 RALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            3332221 11223334444444555555555555444  122444444444444445555555555444444455544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.85  E-value=0.00013  Score=74.65  Aligned_cols=101  Identities=14%  Similarity=0.088  Sum_probs=66.8

Q ss_pred             hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHH
Q 047067          123 YGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTH-FSY  198 (566)
Q Consensus       123 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~  198 (566)
                      ..+..|..+|..|.-+...+|+++.+.+.|++...   .....|+.+...|...|....|+.+++.-....-.|+. ..+
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            34567888899999999999999999999988654   24557888888888888888888888776543322433 333


Q ss_pred             HHHHHHHh-ccCChHHHHHHHHHHHH
Q 047067          199 SSVFTALA-STGSLEQGKWVHAHVIK  223 (566)
Q Consensus       199 ~~ll~~~~-~~~~~~~a~~~~~~~~~  223 (566)
                      ...-..|. +.+..+++..+-.+++.
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~  422 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAIS  422 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHH
Confidence            33333332 34555555555444443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.85  E-value=1.7e-05  Score=73.16  Aligned_cols=295  Identities=15%  Similarity=0.119  Sum_probs=214.7

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHH
Q 047067          128 NVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALI---AGHARKSEGEKALRTFSEMLREGFEPTHFSYS-SVFT  203 (566)
Q Consensus       128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~  203 (566)
                      ++.-.--|.+.+...|++.+|+.-|....+.|+..|-++-   ..|...|+...|+.-|.+.++  ++||...-. .-..
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence            3333445666777789999999999999998888877764   578889999999999998887  578854322 2234


Q ss_pred             HHhccCChHHHHHHHHHHHHhCCCCc--HhH------------HHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHH
Q 047067          204 ALASTGSLEQGKWVHAHVIKSGGQLV--AFV------------GNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNS  266 (566)
Q Consensus       204 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~  266 (566)
                      .+.++|.++.|..=|..+++......  ..+            ....+..+...|+...|++....+.   ..|+..|..
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~  194 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA  194 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence            56789999999999999988753111  111            1223344566788888988888774   347778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHH----HHHH---H-
Q 047067          267 MLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAH----YVTF---V-  338 (566)
Q Consensus       267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~l---i-  338 (566)
                      -..+|...|.+..|+.=++..-+.. .-+..++.-+-..+...|+.+.+....+...+  +.||...    |-.|   + 
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHH
Confidence            8899999999999988777766642 23455666666777788999888888866655  4566432    2211   1 


Q ss_pred             -----HHhhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067          339 -----DLLGRAGLLDRALKFIREM-PIEPTA-----AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY  407 (566)
Q Consensus       339 -----~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  407 (566)
                           ......++|.++.+-.+.. ...|..     ..+..+-.+++..+++.+|++...++++++|+|..++.--+.+|
T Consensus       272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~  351 (504)
T KOG0624|consen  272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY  351 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence                 1234556777777766655 445542     23445557778889999999999999999999999999999999


Q ss_pred             HhcCChhHHHHHHHHHHhCC
Q 047067          408 ASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       408 ~~~g~~~~a~~~~~~m~~~g  427 (566)
                      .-..++++|+.-+++..+.+
T Consensus       352 l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  352 LGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             hhhHHHHHHHHHHHHHHhcC
Confidence            99999999999999887643

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.84  E-value=1.4e-07  Score=89.27  Aligned_cols=244  Identities=13%  Similarity=0.042  Sum_probs=125.8

Q ss_pred             hcCCHHHHHHHHHhCCCC----ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047067          141 RFDQMDDAWFLFTALESK----NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKW  216 (566)
Q Consensus       141 ~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~  216 (566)
                      -.|.+..+..-.+ ....    +.....-+.++|...|+++.++.   +.... -.|.......+...+....+-+.+..
T Consensus        13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~   87 (290)
T PF04733_consen   13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALE   87 (290)
T ss_dssp             CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred             HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence            3466666654443 1111    22334455666777776665442   22222 24555544444444433333333333


Q ss_pred             HHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047067          217 VHAHVIKSGGQ-LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN  295 (566)
Q Consensus       217 ~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  295 (566)
                      -+...+..... .+..+......+|...|++++|++++...  .+.......+..|.+.++++.|.+.++.|.+.  ..|
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD  163 (290)
T PF04733_consen   88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED  163 (290)
T ss_dssp             HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence            33222222212 22223233334455566666666665543  33444444555555666666666666665542  222


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 047067          296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGAC  373 (566)
Q Consensus       296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~  373 (566)
                       .+...+.                               .+.+..+.-.+.+.+|..+|+++  ...+++.+.+.+..+.
T Consensus       164 -~~l~qLa-------------------------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~  211 (290)
T PF04733_consen  164 -SILTQLA-------------------------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH  211 (290)
T ss_dssp             -HHHHHHH-------------------------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred             -HHHHHHH-------------------------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence             2222222                               22233333334567777777777  3345677777777788


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 047067          374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL-NDAARARKMMKE  425 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~  425 (566)
                      ...|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++.
T Consensus       212 l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  212 LQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            8888888888888888888888888888888777788877 556677777665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.84  E-value=1.2e-05  Score=80.04  Aligned_cols=294  Identities=11%  Similarity=-0.051  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCC---C--Ch-HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047067          131 VGSSLLDMYARFDQMDDAWFLFTALES---K--NE-VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA  204 (566)
Q Consensus       131 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~  204 (566)
                      .+..+...|...|+.+.+.+.+....+   +  +. .........+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~   85 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence            344444555555666555444444321   1  11 112223345567788888888888877642 223323331 112


Q ss_pred             Hh----ccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCH
Q 047067          205 LA----STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLG  277 (566)
Q Consensus       205 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~  277 (566)
                      +.    ..+..+.+.+.+... ....+........+...+...|++++|.+.+++..+   .+...+..+...|...|++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~  164 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF  164 (355)
T ss_pred             HHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence            22    234444444444331 111122233444556677888888888888887742   3456677778888888888


Q ss_pred             HHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-CccHHHH-H--HHHHHhhhcCCHHHH
Q 047067          278 KATVRWFEKMLRNGI-APNQ--VTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPEEAHY-V--TFVDLLGRAGLLDRA  350 (566)
Q Consensus       278 ~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A  350 (566)
                      ++|+..+++...... .|+.  ..|..+...+...|++++|..+++....... .+..... +  .++..+...|....+
T Consensus       165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  244 (355)
T cd05804         165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG  244 (355)
T ss_pred             HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence            888888888776422 1222  2345667777888888888888855432221 1111111 1  223333344433322


Q ss_pred             HHH---HHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C--------CCCchHHHHHHHHHhcCChh
Q 047067          351 LKF---IREM-PIEPT---AAVWGALLGACRMHKNVELGAYAAERIFELD-P--------HDSGPHILLANIYASAGRLN  414 (566)
Q Consensus       351 ~~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~  414 (566)
                      .++   .... +..|.   .........++...|+.+.|..+++.+.... .        .........+.++...|+++
T Consensus       245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~  324 (355)
T cd05804         245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA  324 (355)
T ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence            222   1111 10011   1222345566778889999999988876532 1        12345566777888999999


Q ss_pred             HHHHHHHHHHhCC
Q 047067          415 DAARARKMMKESG  427 (566)
Q Consensus       415 ~a~~~~~~m~~~g  427 (566)
                      +|.+.+......+
T Consensus       325 ~A~~~L~~al~~a  337 (355)
T cd05804         325 TALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887644

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=6.1e-06  Score=74.53  Aligned_cols=380  Identities=13%  Similarity=0.046  Sum_probs=226.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHccCCCC---CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHH-HHHHcc
Q 047067           30 QNTILNAYAKCGCLDEARKLFDEMPVK---DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSV-LKASGA  105 (566)
Q Consensus        30 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~  105 (566)
                      +++.+.-+.+-.++++|.+++..-.++   +....+.|..+|....++..|-..|+++-..  .|...-|..- ...+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence            455566667788899999888765543   5556777888888888999999999988763  4544433211 112223


Q ss_pred             CCCchHHHHHHHHHHHHhCCCCchhHHHHHH----HHHHhcCCHHHHHHHHHhCCC-CChHHHHHHHHHHHhCCChhHHH
Q 047067          106 GATDDKFGRQVHAFCLKYGYDWNVYVGSSLL----DMYARFDQMDDAWFLFTALES-KNEVSWNALIAGHARKSEGEKAL  180 (566)
Q Consensus       106 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~  180 (566)
                      .+.+. .+..+...+...   +  ...+-.+    ......+++..++.+.++.+. .+..+-+...-...+.|++++|+
T Consensus        91 A~i~A-DALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv  164 (459)
T KOG4340|consen   91 ACIYA-DALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV  164 (459)
T ss_pred             hcccH-HHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence            33333 444444444321   1  1111111    122346788888889998884 56666666666677889999999


Q ss_pred             HHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-------------cH---------------h
Q 047067          181 RTFSEMLRE-GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQL-------------VA---------------F  231 (566)
Q Consensus       181 ~~~~~m~~~-g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~  231 (566)
                      +-|+...+- |..| ...|+..+. ..+.++.+.|.....++++.|+..             |+               .
T Consensus       165 qkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e  242 (459)
T KOG4340|consen  165 QKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE  242 (459)
T ss_pred             HHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence            999888765 4444 456665554 446788889999988888876422             11               1


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067          232 VGNTLVDMYAKSGSIEDAEKVFNRLLKR-----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC  306 (566)
Q Consensus       232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  306 (566)
                      .+|.-...+.+.|+++.|.+.+-.|+.+     |++|...+.-.- ..+++.+..+-+.-+++... -...||..++-.|
T Consensus       243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly  320 (459)
T KOG4340|consen  243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY  320 (459)
T ss_pred             HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence            1222233467889999999999999755     677766554332 24555556665666665433 3467999999999


Q ss_pred             HccCCHHHHHHHHHhHHhhCCC-ccHHHHHHHHHHhh-hcCCHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCC---H
Q 047067          307 SHAGLLDEGQGYFALMKKHGVE-PEEAHYVTFVDLLG-RAGLLDRALKFIREMPIEP-T-AAVWGALLGACRMHKN---V  379 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~---~  379 (566)
                      ++..-++.|..++..-...-.. .+...|+ |++++. -.-..++|.+-++.+...- + ......-+.--+..++   .
T Consensus       321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~  399 (459)
T KOG4340|consen  321 CKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAI  399 (459)
T ss_pred             hhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            9999999999988432211111 1233343 344443 3345666666555441000 0 0000011111111111   1


Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          380 ELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       380 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ..+++-+++.+++--   .+...-++.|.+..++..+.++|..-.+
T Consensus       400 R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  400 RKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            233344444444331   1455667788899999999999987765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=7.1e-05  Score=69.40  Aligned_cols=402  Identities=13%  Similarity=0.099  Sum_probs=235.0

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC---------------CcchH-------
Q 047067            4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVK---------------DMVTW-------   61 (566)
Q Consensus         4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------------~~~~~-------   61 (566)
                      .+|+.++|..++..+.... .++..++-.|.-.+--.|.+.+|..+-++.++.               |..-|       
T Consensus        69 hLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L  147 (557)
T KOG3785|consen   69 HLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL  147 (557)
T ss_pred             hhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            6799999999999888754 566666666666666678999999888777631               11111       


Q ss_pred             -------HHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHH-ccCCCchHHHHHHHHHHHHhCCCCchhHHH
Q 047067           62 -------TALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKAS-GAGATDDKFGRQVHAFCLKYGYDWNVYVGS  133 (566)
Q Consensus        62 -------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~  133 (566)
                             -+|.+.....-.+++|+++|.+.+..  .|+-...|.-+..| .+..-.+ .+..+..-..+. ++.++..-|
T Consensus       148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYyd-vsqevl~vYL~q-~pdStiA~N  223 (557)
T KOG3785|consen  148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYD-VSQEVLKVYLRQ-FPDSTIAKN  223 (557)
T ss_pred             hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHh-CCCcHHHHH
Confidence                   12223322234578899999888765  45656666555544 4455555 677766665554 333444444


Q ss_pred             HHHHHHHhc--CCHHHH--HHHHHhCCCCChHHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047067          134 SLLDMYARF--DQMDDA--WFLFTALESKNEVSWNALIAGHARK-----SEGEKALRTFSEMLREGFEPTHFSYSSVFTA  204 (566)
Q Consensus       134 ~li~~y~~~--g~~~~A--~~~f~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~  204 (566)
                      ....-..+.  |+..++  .++-+...+.    | ..+.-.++.     ...+.|++++-.+...  -|.  .-..++--
T Consensus       224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iY  294 (557)
T KOG3785|consen  224 LKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIY  294 (557)
T ss_pred             HHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheee
Confidence            443333332  222221  1122221111    1 111112222     2345666666555442  222  22334445


Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH-----HHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHc
Q 047067          205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM-----YAKSGSIEDAEKVFNRLLKR-----DVVSWNSMLTGCAQH  274 (566)
Q Consensus       205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~  274 (566)
                      +.+.++..+|..+.+.+..  ..|...+...++.+     ......+.-|.+.|+-....     ++.--.+|.+.+.-.
T Consensus       295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~  372 (557)
T KOG3785|consen  295 YLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS  372 (557)
T ss_pred             ecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence            6677777777666554321  12222222222221     12222355677777655322     333455666777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH
Q 047067          275 GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI  354 (566)
Q Consensus       275 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  354 (566)
                      .++++.+-.+.....- +..|...-..+.++.+..|++.+|.++|-.+....++.+..-...|...|.+++.++-|.+++
T Consensus       373 ~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~  451 (557)
T KOG3785|consen  373 FQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM  451 (557)
T ss_pred             HHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            7888888888887765 333444445677888889999999999966555444433333345668899999999999999


Q ss_pred             HhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 047067          355 REMPIEPTAAVWGALL-GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEP  432 (566)
Q Consensus       355 ~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~  432 (566)
                      -++.-..+..+.-.+| +-|-+.+.+--|-+.|+.+..++|... .|         .|+-.....+|..+....-+|.|
T Consensus       452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE-nW---------eGKRGACaG~f~~l~~~~~~~~p  520 (557)
T KOG3785|consen  452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE-NW---------EGKRGACAGLFRQLANHKTDPIP  520 (557)
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc-cc---------CCccchHHHHHHHHHcCCCCCCc
Confidence            9886333444444444 568888888889999999888888643 22         34445556677777665554444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.71  E-value=2.5e-05  Score=88.16  Aligned_cols=297  Identities=12%  Similarity=0.028  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--------hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH---
Q 047067          131 VGSSLLDMYARFDQMDDAWFLFTALES----KN--------EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTH---  195 (566)
Q Consensus       131 ~~~~li~~y~~~g~~~~A~~~f~~~~~----~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~---  195 (566)
                      ........+...|++++|...+.....    .+        ......+...+...|++++|...+++....-...+.   
T Consensus       411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (903)
T PRK04841        411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR  490 (903)
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence            334455666788999998888875421    11        111222334566899999999999988763111121   


Q ss_pred             -HHHHHHHHHHhccCChHHHHHHHHHHHHhCC---C--CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C---
Q 047067          196 -FSYSSVFTALASTGSLEQGKWVHAHVIKSGG---Q--LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-------R---  259 (566)
Q Consensus       196 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---  259 (566)
                       .....+...+...|+++.|...+.+.....-   .  ........+...+...|+++.|...+++...       +   
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence             2334455567789999999999888865321   1  1123445667788899999999998876521       1   


Q ss_pred             -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-CccHHH
Q 047067          260 -DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG--IAPN--QVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPEEAH  333 (566)
Q Consensus       260 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~~~~  333 (566)
                       ....+..+...+...|++++|...+++.....  ..|.  ...+..+.......|+.++|...+.......- ......
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~  650 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD  650 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence             12234455666777899999999999876531  1122  33444556677789999999998855433211 111111


Q ss_pred             H-----HHHHHHhhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCC
Q 047067          334 Y-----VTFVDLLGRAGLLDRALKFIREMPI-E-PTA----AVWGALLGACRMHKNVELGAYAAERIFELD------PHD  396 (566)
Q Consensus       334 ~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~  396 (566)
                      +     ......+...|+.+.|..++..... . ...    ..+..+..++...|+.++|...++++++..      +..
T Consensus       651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~  730 (903)
T PRK04841        651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL  730 (903)
T ss_pred             HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence            1     1122445668999999999877621 1 111    123456677888999999999999998752      122


Q ss_pred             CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          397 SGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       397 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ..++..++.+|...|+.++|...+.+..+..
T Consensus       731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            3467788899999999999999999998744

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.71  E-value=1.7e-05  Score=79.89  Aligned_cols=192  Identities=14%  Similarity=0.206  Sum_probs=106.1

Q ss_pred             HHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 047067          202 FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATV  281 (566)
Q Consensus       202 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  281 (566)
                      +.+......+..|..+++.+.....  -...|..+.+-|+..|+++.|+++|-+.     ..++--|..|.+.|+++.|.
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence            3344455566666666666554432  1223445566677777777777776543     23445566677777777776


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 047067          282 RWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP  361 (566)
Q Consensus       282 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p  361 (566)
                      ++-.+..  |.......|..-..-.-..|++.+|.+++-.+   | .|+.     .|.+|-+.|..++..++.++-.  |
T Consensus       812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h--~  878 (1636)
T KOG3616|consen  812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH--G  878 (1636)
T ss_pred             HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhC--h
Confidence            6654432  22223344444444455666676766666221   1 2332     4566667777777666666652  2


Q ss_pred             CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 047067          362 TA--AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARK  421 (566)
Q Consensus       362 ~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  421 (566)
                      +.  .+-..+..-+-..|+++.|+..|-++        .-+..-.++|...+.|++|.++-+
T Consensus       879 d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             hhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence            22  34444555566666666666655443        234455566666666666665543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.70  E-value=0.00012  Score=82.65  Aligned_cols=363  Identities=10%  Similarity=-0.048  Sum_probs=220.2

Q ss_pred             HHHHHHHhcCChhHHHHHHccCCCCCcch--HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCc
Q 047067           32 TILNAYAKCGCLDEARKLFDEMPVKDMVT--WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATD  109 (566)
Q Consensus        32 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~  109 (566)
                      .....|...|++.+|..........+...  ...........|++..+..++..+.......+..........+...++.
T Consensus       346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~  425 (903)
T PRK04841        346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY  425 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence            33444555666666666555554332211  1111223445677777777776653221111222222233334456777


Q ss_pred             hHHHHHHHHHHHHhCC------CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCh----HHHHHHHHHHHhC
Q 047067          110 DKFGRQVHAFCLKYGY------DWN--VYVGSSLLDMYARFDQMDDAWFLFTALES----KNE----VSWNALIAGHARK  173 (566)
Q Consensus       110 ~~~~~~i~~~~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~  173 (566)
                      + .+........+.--      ++.  ......+...+...|++++|...+++...    .+.    ..++.+...+...
T Consensus       426 ~-~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  504 (903)
T PRK04841        426 S-EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK  504 (903)
T ss_pred             H-HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence            7 77766666544311      111  12223344566789999999998887532    222    3456677778889


Q ss_pred             CChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC---CcHhHHHHHHHHHH
Q 047067          174 SEGEKALRTFSEMLREGF---EP--THFSYSSVFTALASTGSLEQGKWVHAHVIKS----GGQ---LVAFVGNTLVDMYA  241 (566)
Q Consensus       174 g~~~~A~~~~~~m~~~g~---~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~~~  241 (566)
                      |++++|...+.+.....-   .+  ...++..+...+...|+++.|...+++....    +..   .....+..+...+.
T Consensus       505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  584 (903)
T PRK04841        505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW  584 (903)
T ss_pred             CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence            999999999988764311   11  1234455666788899999999998887653    211   12334555667788


Q ss_pred             hcCCHHHHHHHHHhcCC------C--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHH
Q 047067          242 KSGSIEDAEKVFNRLLK------R--DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PNQVTF-----LCVLTACS  307 (566)
Q Consensus       242 ~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~  307 (566)
                      ..|++++|...+++...      +  ....+..+...+...|++++|...+.+....... .....+     ...+..+.
T Consensus       585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (903)
T PRK04841        585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ  664 (903)
T ss_pred             HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence            88999999999887632      1  1334555667788899999999999888552111 111111     11223445


Q ss_pred             ccCCHHHHHHHHHhHHhhCCCcc---HHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhc
Q 047067          308 HAGLLDEGQGYFALMKKHGVEPE---EAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPTA-AVWGALLGACRMH  376 (566)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~  376 (566)
                      ..|+.+.|...+...........   ...+..+..++...|+.++|...+++.       +..++. .+...+..++...
T Consensus       665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~  744 (903)
T PRK04841        665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ  744 (903)
T ss_pred             HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence            57899999998844332111111   111345677888999999999998876       222222 3556666778999


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q 047067          377 KNVELGAYAAERIFELDPH  395 (566)
Q Consensus       377 g~~~~a~~~~~~~~~~~p~  395 (566)
                      |+.++|...+.+++++...
T Consensus       745 G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        745 GRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             CCHHHHHHHHHHHHHHhCc
Confidence            9999999999999987644

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=6e-05  Score=78.83  Aligned_cols=239  Identities=12%  Similarity=0.070  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067          160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM  239 (566)
Q Consensus       160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  239 (566)
                      +..|+.+..+-.+.|...+|++-|-+.      -|+..|..+++.+.+.|.+++-...+..+.+..-+|.+.  +.|+-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence            567999999999999999998887543      367789999999999999999999888888776666554  678999


Q ss_pred             HHhcCCHHHHHHHHHhcCC-----------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 047067          240 YAKSGSIEDAEKVFNRLLK-----------------------RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ  296 (566)
Q Consensus       240 ~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  296 (566)
                      |++.+++.+-++.+..-..                       .++.-|..|...+...|++..|.+.-++.      .+.
T Consensus      1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred             HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence            9999998887776532100                       02334444555555555555554443332      234


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047067          297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACR  374 (566)
Q Consensus       297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~  374 (566)
                      .||--+-.+|...+.+..|.     +...++.....-..-|+.-|...|-++|-..+++.. +++. ....|.-|.-.|+
T Consensus      1250 ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred             hHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence            55666666665544433322     112222233344455666666677777766666655 4333 3344444444444


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      +.+ ++...+.++-....     ...--++.++-++.-|.|..-++.+-
T Consensus      1325 kyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1325 KYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred             hcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            433 23333322222110     01123455566666666665555444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.64  E-value=0.00011  Score=73.08  Aligned_cols=250  Identities=11%  Similarity=0.051  Sum_probs=131.5

Q ss_pred             HHhcCCHHHHHHHHHhCCC--C-ChHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCC
Q 047067          139 YARFDQMDDAWFLFTALES--K-NEVSWNALIAGHAR----KSEGEKALRTFSEMLREGFEPTH-FSYSSVFTALASTGS  210 (566)
Q Consensus       139 y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~  210 (566)
                      +...|++++|.+.+++..+  | |...++. ...+..    .+....+.+.+..  .....|+. .....+...+...|+
T Consensus        53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          53 AWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence            3445666666666655432  1 3333332 222222    3333444444333  11122332 233344456667777


Q ss_pred             hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCCHHHHHHH
Q 047067          211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR-----DV--VSWNSMLTGCAQHGLGKATVRW  283 (566)
Q Consensus       211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~~  283 (566)
                      +++|...+++.++.. +.+...+..+...|...|++++|...+++..+.     +.  ..|..+...+...|++++|+.+
T Consensus       130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            777777777777765 444556667777777788888888877766431     11  2355677777888888888888


Q ss_pred             HHHHHHcCC-CCCHHHH-H--HHHHHHHccCCHHHHHHH--H-HhHHhhCC-CccHHHHHHHHHHhhhcCCHHHHHHHHH
Q 047067          284 FEKMLRNGI-APNQVTF-L--CVLTACSHAGLLDEGQGY--F-ALMKKHGV-EPEEAHYVTFVDLLGRAGLLDRALKFIR  355 (566)
Q Consensus       284 ~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~-~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~  355 (566)
                      +++...... .+..... .  .++.-+...|....+.+.  . ........ ..........+..+...|+.++|..+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~  288 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA  288 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            888754321 1111111 1  222223333433322222  2 11111100 0111112245667788899999999888


Q ss_pred             hCC--CCC---CH----HHHHHHH--HHHHhcCCHHHHHHHHHHHHhc
Q 047067          356 EMP--IEP---TA----AVWGALL--GACRMHKNVELGAYAAERIFEL  392 (566)
Q Consensus       356 ~~~--~~p---~~----~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~  392 (566)
                      .+.  ...   ..    .+...++  -++...|+.+.|.+.+..++.+
T Consensus       289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            761  111   11    1222233  3356889999999999988764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.64  E-value=2.5e-06  Score=76.27  Aligned_cols=118  Identities=11%  Similarity=0.056  Sum_probs=97.0

Q ss_pred             cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHHH
Q 047067          309 AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGA-CRMHKN--VELGA  383 (566)
Q Consensus       309 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a~  383 (566)
                      .++.+++...+....+.. +.+...|..|...|...|++++|...|++. .+.| +...+..+..+ +...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            556677777775444433 557788899999999999999999999988 5566 56777777776 467777  59999


Q ss_pred             HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       384 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ++++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999998754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.62  E-value=4.3e-06  Score=77.78  Aligned_cols=180  Identities=14%  Similarity=0.020  Sum_probs=116.0

Q ss_pred             CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch---hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----H
Q 047067          228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DV---VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ----V  297 (566)
Q Consensus       228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~  297 (566)
                      .....+..+...|.+.|++++|...|+++..  | +.   .+|..+..+|.+.|++++|+..++++.+.  .|+.    .
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence            3445566677778888888888888877643  2 21   35677777888888888888888888774  3321    1


Q ss_pred             HHHHHHHHHHcc--------CCHHHHHHHHHhHHhhCCCccH-HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 047067          298 TFLCVLTACSHA--------GLLDEGQGYFALMKKHGVEPEE-AHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGA  368 (566)
Q Consensus       298 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  368 (566)
                      ++..+..++.+.        |+.++|.+.+..+.+..  |+. ..+..+...    +......           ......
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~  171 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM----DYLRNRL-----------AGKELY  171 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence            344444445443        56677777775544432  222 112111111    0000000           001124


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          369 LLGACRMHKNVELGAYAAERIFELDPHDS---GPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +...+...|+++.|...++++++..|+++   ..+..++.+|.+.|++++|..+++.+..+
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45668889999999999999999877654   68889999999999999999999988754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.62  E-value=0.00014  Score=67.30  Aligned_cols=328  Identities=13%  Similarity=0.113  Sum_probs=174.9

Q ss_pred             HHHHHHhcCChhHHHHHHccCCCCCcchHHHHH---HHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCc
Q 047067           33 ILNAYAKCGCLDEARKLFDEMPVKDMVTWTALI---SGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATD  109 (566)
Q Consensus        33 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~  109 (566)
                      |-..+...|++.+|+.-|....+-|+..|.++-   ..|...|+...|+.=|.+.++  ++||-..-             
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~A-------------  108 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAA-------------  108 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHH-------------
Confidence            344455566677777766666666666666553   346666666666666666554  35553211             


Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047067          110 DKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE  189 (566)
Q Consensus       110 ~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  189 (566)
                                            ..--...+.+.|.++.|..=|+.+.+.++.           +|...+|.+-+....+ 
T Consensus       109 ----------------------RiQRg~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e-  154 (504)
T KOG0624|consen  109 ----------------------RIQRGVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE-  154 (504)
T ss_pred             ----------------------HHHhchhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH-
Confidence                                  001112345667777777766665543210           0111111111000000 


Q ss_pred             CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHH
Q 047067          190 GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL---LKRDVVSWNS  266 (566)
Q Consensus       190 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~  266 (566)
                           .......+..+...|+...+......+++.. +-|...+..-..+|...|++..|+.-++..   ...++...--
T Consensus       155 -----~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk  228 (504)
T KOG0624|consen  155 -----HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK  228 (504)
T ss_pred             -----HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence                 0111222233334455555555555555443 445555555555566666665555444333   3334445555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH----HHHH---H------HHHHccCCHHHHHHHHHhHHhhCCC-c--c
Q 047067          267 MLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT----FLCV---L------TACSHAGLLDEGQGYFALMKKHGVE-P--E  330 (566)
Q Consensus       267 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~l---l------~a~~~~g~~~~a~~~~~~~~~~~~~-p--~  330 (566)
                      +-..+...|+.+.++...++-++  +.||...    |-.|   .      ......+.+.++.+-.+...+.... +  .
T Consensus       229 is~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir  306 (504)
T KOG0624|consen  229 ISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR  306 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence            55555556666666666555555  3444321    1111   0      1122345555555555333333222 1  1


Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      ...+..+-..|...|++.+|++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|++..+-.-      
T Consensus       307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG------  380 (504)
T KOG0624|consen  307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG------  380 (504)
T ss_pred             eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH------
Confidence            223445556777889999999988887 67776 6688777888998999999999999999999998644322      


Q ss_pred             hcCChhHHHHHHHHHHhCC
Q 047067          409 SAGRLNDAARARKMMKESG  427 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~~~g  427 (566)
                          .+.|.++.+...++.
T Consensus       381 ----le~Akrlkkqs~kRD  395 (504)
T KOG0624|consen  381 ----LERAKRLKKQSGKRD  395 (504)
T ss_pred             ----HHHHHHHHHHhccch
Confidence                245555555554443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.60  E-value=6.4e-06  Score=88.67  Aligned_cols=199  Identities=15%  Similarity=0.173  Sum_probs=162.4

Q ss_pred             CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047067          227 QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR--------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT  298 (566)
Q Consensus       227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  298 (566)
                      +.....|-..|......+++++|++++++....        -...|.+++..-...|.-+...++|+++.+.  --....
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            455667777788888889999999999887432        3467888888888888888889999998874  223456


Q ss_pred             HHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 047067          299 FLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PIEPTAAVWGALLGAC  373 (566)
Q Consensus       299 ~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~  373 (566)
                      |..|...|.+.+..++|.+++ .++.+.+  -...+|..+++.+.+.++-++|..++.+.    |-+-......-.+..-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            888889999999999999999 4545555  56778999999999999999999999877    3233455666666777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067          374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK  429 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~  429 (566)
                      .++|+.+++..+|+..+.-.|.....|...+++-.+.|..+.++.+|++....++.
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            88999999999999999999999999999999999999999999999999988774

>PF12854 PPR_1: PPR repeat

Probab=98.60  E-value=7.2e-08  Score=58.28  Aligned_cols=33  Identities=27%  Similarity=0.517  Sum_probs=28.6

Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047067          124 GYDWNVYVGSSLLDMYARFDQMDDAWFLFTALE  156 (566)
Q Consensus       124 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~  156 (566)
                      |+.||..+||+||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            678888888888888888888888888888874

>PLN02789 farnesyltranstransferase

Probab=98.60  E-value=3e-05  Score=74.54  Aligned_cols=229  Identities=13%  Similarity=0.091  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS-YSSVFTALASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDM  239 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  239 (566)
                      ++..+-..+...++.++|+.+..++++.  .|+..| |..--.++...+ .++++...+..+++.. +.+..+|+....+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~  115 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence            4455555556666667777777666653  344332 222222333333 3455555555555443 2233334333333


Q ss_pred             HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067          240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF  319 (566)
Q Consensus       240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  319 (566)
                      +.+.|+.                             ..++++.+++++++...+ |...|.....++.+.|+++++.+.+
T Consensus       116 l~~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~  165 (320)
T PLN02789        116 AEKLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC  165 (320)
T ss_pred             HHHcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3333331                             013344444444442211 3344444444444444455554444


Q ss_pred             HhHHhhCCCccHHHHHHHHHHhhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHH
Q 047067          320 ALMKKHGVEPEEAHYVTFVDLLGRA---GL----LDRALKFIREM-PIEP-TAAVWGALLGACRMH----KNVELGAYAA  386 (566)
Q Consensus       320 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~  386 (566)
                      ..+.+.+. -+...|+.....+.+.   |.    .+++.++..++ ...| |...|+.+...+...    ++..+|...+
T Consensus       166 ~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~  244 (320)
T PLN02789        166 HQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC  244 (320)
T ss_pred             HHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence            43333321 1223333333222222   11    23455555343 4456 557888888887763    3446688888


Q ss_pred             HHHHhcCCCCCchHHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 047067          387 ERIFELDPHDSGPHILLANIYASAG------------------RLNDAARARKMMK  424 (566)
Q Consensus       387 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~  424 (566)
                      .++++.+|.++.+...|+++|+...                  ..++|.++++.+.
T Consensus       245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            9988889999889999999998642                  2356777777773

>PF12854 PPR_1: PPR repeat

Probab=98.59  E-value=6.5e-08  Score=58.48  Aligned_cols=33  Identities=42%  Similarity=0.708  Sum_probs=27.1

Q ss_pred             CCCCChhHHHHHHHHHHhcCChhHHHHHHccCC
Q 047067           22 AFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP   54 (566)
Q Consensus        22 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~   54 (566)
                      |+.||..+||.||+.|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            678888888888888888888888888888774

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.59  E-value=1.6e-06  Score=73.29  Aligned_cols=109  Identities=9%  Similarity=-0.071  Sum_probs=67.6

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047067          299 FLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMH  376 (566)
Q Consensus       299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~  376 (566)
                      +..+..++.+.|++++|...|....... +.+...|..+..++.+.|++++|...|++. ...| +...|..+..++...
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            3344555566666666666665544432 234556666666666777777777776666 3344 445666666667777


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          377 KNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      |+.++|...+++++++.|+++..+...+.+..
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            77777777777777777777666655554443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=0.0017  Score=68.50  Aligned_cols=143  Identities=19%  Similarity=0.248  Sum_probs=116.8

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067          260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD  339 (566)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  339 (566)
                      .+..|..+..+-.+.|...+|++-|-+.      -|+..|.-++..+++.|.+++-..++.|.++..-.|.+.+  .||-
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIF 1174 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHH
Confidence            3467999999999999999999887653      3678899999999999999999999999888887787654  6899


Q ss_pred             HhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067          340 LLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA  419 (566)
Q Consensus       340 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  419 (566)
                      +|++.+++.+-++++.    -||......+..-|...|.++.|.-+|..+        +.|..|+..+...|.+..|...
T Consensus      1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred             HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888764    578888888888899999999888777653        4667777777777777766654


Q ss_pred             HHH
Q 047067          420 RKM  422 (566)
Q Consensus       420 ~~~  422 (566)
                      -++
T Consensus      1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred             hhh
Confidence            433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=2.6e-05  Score=70.54  Aligned_cols=179  Identities=13%  Similarity=0.090  Sum_probs=104.6

Q ss_pred             cCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067          243 SGSIEDAEKVFNRLL-KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL  321 (566)
Q Consensus       243 ~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  321 (566)
                      .+++..+..+.++.+ +.+..+.+.......+.|++++|++-|+...+-+---....|+..+ +..+.++.+.|.++.+.
T Consensus       125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSE  203 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISE  203 (459)
T ss_pred             cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence            344444555555544 2334444444444445555555555555554422121223343333 22334455555555544


Q ss_pred             HHhhCCC-------------cc--------HHHHHHHH-------HHhhhcCCHHHHHHHHHhCC----CCCCHHHHHHH
Q 047067          322 MKKHGVE-------------PE--------EAHYVTFV-------DLLGRAGLLDRALKFIREMP----IEPTAAVWGAL  369 (566)
Q Consensus       322 ~~~~~~~-------------p~--------~~~~~~li-------~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l  369 (566)
                      +..+|+.             ||        ..+-+.++       ..+.+.|+++.|.+.+-.||    -+.|++|...+
T Consensus       204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~  283 (459)
T KOG4340|consen  204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ  283 (459)
T ss_pred             HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence            4444331             11        11222333       34568899999999999994    23467777554


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          370 LGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       370 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      .-. -..+++..+.+-+.-+++++|-.+.++..++-.|++..-++-|..++.+-
T Consensus       284 Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  284 ALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             HHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence            322 23566777888888889999988899999999999999999888876643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.56  E-value=0.00081  Score=67.66  Aligned_cols=401  Identities=14%  Similarity=0.069  Sum_probs=247.1

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067            5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILF   81 (566)
Q Consensus         5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~   81 (566)
                      .|+.++|...-+..++.. ..+.+.|..+.-.+-.-.++++|.+.|....   +.|...|.-+.-.=++.|+++.....-
T Consensus        54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr  132 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR  132 (700)
T ss_pred             ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            567778877776666644 3456677777666777789999999999754   446677877766667888888887777


Q ss_pred             HHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhC-CCCchhHHHHHHH------HHHhcCCHHHHHHHHH
Q 047067           82 SQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYG-YDWNVYVGSSLLD------MYARFDQMDDAWFLFT  153 (566)
Q Consensus        82 ~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g-~~~~~~~~~~li~------~y~~~g~~~~A~~~f~  153 (566)
                      .++.+.  .|+ ...|.....+.--.|+.. .+..+.+...+.. -.|+...+.-...      ...+.|..++|.+.+.
T Consensus       133 ~~LLql--~~~~ra~w~~~Avs~~L~g~y~-~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~  209 (700)
T KOG1156|consen  133 NQLLQL--RPSQRASWIGFAVAQHLLGEYK-MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL  209 (700)
T ss_pred             HHHHHh--hhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            777664  444 446777777777778877 7888877777765 2455555443322      3456788888888877


Q ss_pred             hCCCC--ChH-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCChHHHHHHHHHHHHhCC--
Q 047067          154 ALESK--NEV-SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALA--STGSLEQGKWVHAHVIKSGG--  226 (566)
Q Consensus       154 ~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~--  226 (566)
                      .-...  |-. .-.+....+.+.+++++|..++..+...  .||..-|...+..+.  -....+....++....+.-.  
T Consensus       210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~  287 (700)
T KOG1156|consen  210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH  287 (700)
T ss_pred             hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence            66543  322 3345567788999999999999999886  488877776665554  23333333466665544321  


Q ss_pred             -CCcHhHHHHHHHHHHhcCCHHH-HHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-------
Q 047067          227 -QLVAFVGNTLVDMYAKSGSIED-AEKVFNRLLKRD-VVSWNSMLTGCAQHGLGKATVRWFEKMLR----NGI-------  292 (566)
Q Consensus       227 -~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-------  292 (566)
                       .|-....+ ++    ....+.+ .-+++..+.++. +.++..+.+.|-.-...+-..++...+..    .|.       
T Consensus       288 e~p~Rlpls-vl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~  362 (700)
T KOG1156|consen  288 ECPRRLPLS-VL----NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG  362 (700)
T ss_pred             ccchhccHH-Hh----CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence             11111111 11    1122222 233344444443 34566666655443322211222222221    111       


Q ss_pred             ---CCCHH--HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHH
Q 047067          293 ---APNQV--TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAA  364 (566)
Q Consensus       293 ---~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~  364 (566)
                         +|...  |+..+...+-+.|+++.|..+++...++  .|+ ++.|..-.+++...|++++|..++++. .+ .||..
T Consensus       363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~  440 (700)
T KOG1156|consen  363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA  440 (700)
T ss_pred             ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence               34443  4556677888999999999999776653  454 456666678899999999999999988 22 34443


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHH
Q 047067          365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARK  421 (566)
Q Consensus       365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  421 (566)
                      +=.--..-..+..+.++|.++......-+-   +....|..+-+-==..+.+..++.
T Consensus       441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~---~~~~~L~~mqcmWf~~E~g~ay~r  494 (700)
T KOG1156|consen  441 INSKCAKYMLRANEIEEAEEVLSKFTREGF---GAVNNLAEMQCMWFQLEDGEAYLR  494 (700)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHhhhccc---chhhhHHHhhhHHHhHhhhHHHHH
Confidence            322334445677899999998888766543   233444444333223444544443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=0.00097  Score=66.37  Aligned_cols=375  Identities=15%  Similarity=0.104  Sum_probs=201.8

Q ss_pred             HHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc--cCCC
Q 047067           34 LNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG--AGAT  108 (566)
Q Consensus        34 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~  108 (566)
                      ++.+...|++++|.+.-.++.   +.|...+..=+-+..+.+++++|+.+.+.-..  +..+.+-+  +=++|+  +.+.
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRLNK   94 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHccc
Confidence            567777888888888777665   33555566666677788888888855443221  01111111  233433  4555


Q ss_pred             chHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 047067          109 DDKFGRQVHAFCLKYGYDWNV-YVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEML  187 (566)
Q Consensus       109 ~~~~~~~i~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  187 (566)
                      .+ .+.....     |.+++. .+...-...+.+.|++++|..+|+.+.+.+...+..-+.+-+-.-  ..+... +.|.
T Consensus        95 ~D-ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~-~~~q  165 (652)
T KOG2376|consen   95 LD-EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQV-QLLQ  165 (652)
T ss_pred             HH-HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhH-HHHH
Confidence            55 4444443     333332 244444556677788888888888776554444433332211100  001111 1233


Q ss_pred             HCCCCCCHHHHHHHHH---HHhccCChHHHHHHHHHHHHhCC-------CCcH-------hHHHHHHHHHHhcCCHHHHH
Q 047067          188 REGFEPTHFSYSSVFT---ALASTGSLEQGKWVHAHVIKSGG-------QLVA-------FVGNTLVDMYAKSGSIEDAE  250 (566)
Q Consensus       188 ~~g~~pd~~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~li~~~~~~g~~~~A~  250 (566)
                      .....| ..||..+.+   .+...|++.+|.+++....+.+.       ..+.       .+--.|.-.+-..|+.++|.
T Consensus       166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            323333 345655554   34577899999999988843321       0001       11123455677889999999


Q ss_pred             HHHHhcCCC---Ch----hHHHHHHHHHHHc---------------------------------------------CCHH
Q 047067          251 KVFNRLLKR---DV----VSWNSMLTGCAQH---------------------------------------------GLGK  278 (566)
Q Consensus       251 ~~~~~~~~~---~~----~~~~~li~~~~~~---------------------------------------------g~~~  278 (566)
                      .++......   |.    +.-|.++..-...                                             +..+
T Consensus       245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~  324 (652)
T KOG2376|consen  245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD  324 (652)
T ss_pred             HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            988877432   11    1112221110000                                             0011


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHH-
Q 047067          279 ATVRWFEKMLRNGIAPNQVTFLCVLTACSH--AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIR-  355 (566)
Q Consensus       279 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-  355 (566)
                      .+.++-...  -+..| ...+..++..+.+  ......+..++....+....-...+.-.++......|+++.|.+++. 
T Consensus       325 q~r~~~a~l--p~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~  401 (652)
T KOG2376|consen  325 QVRELSASL--PGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL  401 (652)
T ss_pred             HHHHHHHhC--CccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            111110000  01122 2344455554433  22456666666444433322234566677788889999999999988 


Q ss_pred             -------hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhcCChhHHHHHH
Q 047067          356 -------EM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFEL----DPHD---SGPHILLANIYASAGRLNDAARAR  420 (566)
Q Consensus       356 -------~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~  420 (566)
                             .+ .+.-.+.+..++...+..-++.+.|..++.+++.-    .+..   ...+..++..-.+.|+-++|.+++
T Consensus       402 ~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l  481 (652)
T KOG2376|consen  402 FLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL  481 (652)
T ss_pred             HhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence                   44 23334455566666677777777788888877742    1221   223444555566779999999999


Q ss_pred             HHHHh
Q 047067          421 KMMKE  425 (566)
Q Consensus       421 ~~m~~  425 (566)
                      +++.+
T Consensus       482 eel~k  486 (652)
T KOG2376|consen  482 EELVK  486 (652)
T ss_pred             HHHHH
Confidence            99986

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.53  E-value=0.00023  Score=72.19  Aligned_cols=255  Identities=15%  Similarity=0.164  Sum_probs=144.8

Q ss_pred             HhcCCHHHHHHHHHhCCCCChH--HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047067          140 ARFDQMDDAWFLFTALESKNEV--SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV  217 (566)
Q Consensus       140 ~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~  217 (566)
                      ....++.+|..+++.+..+++.  -|..+..-|...|+++.|.++|.+.-         .+.-.+..|.+.|.++.|.++
T Consensus       743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl  813 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL  813 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence            3445555555555555554333  24445556666666666666664431         234445556666666665554


Q ss_pred             HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--
Q 047067          218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN--  295 (566)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--  295 (566)
                      -.+.  .|.......|-+-..-.-+.|++.+|+++|-.+..|+.     -|..|-++|..+..+.+..+-     .|+  
T Consensus       814 a~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l  881 (1636)
T KOG3616|consen  814 AEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHL  881 (1636)
T ss_pred             HHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence            3332  23333444444444455556666666666665555543     355566666666666655542     233  


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCC---CC-HHHHHHHH-
Q 047067          296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE---PT-AAVWGALL-  370 (566)
Q Consensus       296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~-~~~~~~ll-  370 (566)
                      ..|-..+..-+...|++..|...|-...         -|.+-+++|-..+.|++|.++-+.-+-.   .. ...|.--+ 
T Consensus       882 ~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig  952 (1636)
T KOG3616|consen  882 HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG  952 (1636)
T ss_pred             hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence            3455666677778889998888774432         2567788999999999999887765211   11 12332211 


Q ss_pred             -----HHHHhcCCHHHH-------------HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          371 -----GACRMHKNVELG-------------AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       371 -----~~~~~~g~~~~a-------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                           ..+-++|-++.|             ..+.+-..+  ..-+..+..++..+...|++++|.+-+-+..+.
T Consensus       953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen  953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred             cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence                 222334444333             333332222  223457778888889999999998877666654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.50  E-value=4.1e-06  Score=69.70  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      ....-.+...+...|++++|..+|+-. .+.| +..-|-.|..++...|++++|+..|.++..++|+++.++..++.+|.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            344445667788999999999999988 5566 55788999999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHh
Q 047067          409 SAGRLNDAARARKMMKE  425 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~~  425 (566)
                      ..|+.+.|++.|+....
T Consensus       115 ~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        115 ACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            99999999999999876

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.50  E-value=1.8e-06  Score=72.97  Aligned_cols=94  Identities=16%  Similarity=0.000  Sum_probs=86.1

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067          334 YVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG  411 (566)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  411 (566)
                      +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++++++|+++.++..++.++...|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            556788889999999999999987 5556 66899999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhCC
Q 047067          412 RLNDAARARKMMKESG  427 (566)
Q Consensus       412 ~~~~a~~~~~~m~~~g  427 (566)
                      ++++|...++...+..
T Consensus       107 ~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        107 EPGLAREAFQTAIKMS  122 (144)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999998754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.47  E-value=0.00014  Score=74.55  Aligned_cols=357  Identities=15%  Similarity=0.152  Sum_probs=217.2

Q ss_pred             CChhHHHHHH--HHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHC-C--------CCCCh
Q 047067           25 NDIAMQNTIL--NAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRL-G--------LKPNQ   93 (566)
Q Consensus        25 ~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~   93 (566)
                      -|..+-.+++  +.|.--|+++.|.+-.+.+.  +-..|..|.+.+.+..+.+-|.-.+-.|... |        -.|+.
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e  801 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE  801 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence            4667777776  45777899999988877664  4467999999999988888777666666432 1        12221


Q ss_pred             hHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Q 047067           94 FTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK-NEVSWNALIAGHAR  172 (566)
Q Consensus        94 ~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~  172 (566)
                       +=.-+.-.....|.++ .++.++....+.         ..|=..|-..|.+++|.++-+.-..- =..||.....-+-.
T Consensus       802 -~eakvAvLAieLgMlE-eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea  870 (1416)
T KOG3617|consen  802 -DEAKVAVLAIELGMLE-EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA  870 (1416)
T ss_pred             -hhhHHHHHHHHHhhHH-HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence             1111111223456666 777777776664         34555677788888888775542221 12356666666666


Q ss_pred             CCChhHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHH
Q 047067          173 KSEGEKALRTFSEM----------LREG---------FEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVG  233 (566)
Q Consensus       173 ~g~~~~A~~~~~~m----------~~~g---------~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  233 (566)
                      .++.+.|++.|++.          +...         -..|...|..-.......|+.+.|..+|..+..         |
T Consensus       871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~  941 (1416)
T KOG3617|consen  871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y  941 (1416)
T ss_pred             hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence            77888888877653          2111         012333444444555566777777777665543         3


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---
Q 047067          234 NTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG---  310 (566)
Q Consensus       234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---  310 (566)
                      -+++...+-.|+.++|-++-++  ..|..+...+...|-..|++.+|+..|.+.+.         |...|+.|-..+   
T Consensus       942 fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen  942 FSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred             hhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence            4566666667777777777654  33556667788899999999999999988654         333333333222   


Q ss_pred             ------------CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-----------CCC--CCHHH
Q 047067          311 ------------LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-----------PIE--PTAAV  365 (566)
Q Consensus       311 ------------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----------~~~--p~~~~  365 (566)
                                  +.-.|..+|+..   |.     -....+..|-++|.+.+|+++--+-           .+.  .|+..
T Consensus      1011 ~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred             HHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence                        333344444331   11     1223466788999999888763221           122  35555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh----------------------cCCCC---------CchHHHHHHHHHhcCChh
Q 047067          366 WGALLGACRMHKNVELGAYAAERIFE----------------------LDPHD---------SGPHILLANIYASAGRLN  414 (566)
Q Consensus       366 ~~~ll~~~~~~g~~~~a~~~~~~~~~----------------------~~p~~---------~~~~~~l~~~~~~~g~~~  414 (566)
                      .+.-..-+..+.+++.|..++-.+.+                      +.|..         ......++..|.++|.+.
T Consensus      1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence            55555556667777777665544321                      12221         125667899999999988


Q ss_pred             HHHHHHHH
Q 047067          415 DAARARKM  422 (566)
Q Consensus       415 ~a~~~~~~  422 (566)
                      .|.+-|.+
T Consensus      1163 ~AtKKfTQ 1170 (1416)
T KOG3617|consen 1163 AATKKFTQ 1170 (1416)
T ss_pred             HHHHHHhh
Confidence            88766644

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.46  E-value=0.00015  Score=76.13  Aligned_cols=378  Identities=13%  Similarity=-0.005  Sum_probs=198.9

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHH-
Q 047067           27 IAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA-  102 (566)
Q Consensus        27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-  102 (566)
                      ...|..|...|...-+...|.+.|++.-   ..|..+|......|++..+++.|..+.-.--+.. +.-...++-+-.+ 
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP  570 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence            3467788888888788888888888765   4466788888899999999998888732221110 1111122222222 


Q ss_pred             -HccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHH---HHHHHHhCCChhH
Q 047067          103 -SGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNA---LIAGHARKSEGEK  178 (566)
Q Consensus       103 -~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~  178 (566)
                       +...++.. .+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-.   ....-+..|.+.+
T Consensus       571 yyLea~n~h-~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  571 YYLEAHNLH-GAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             cccCccchh-hHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence             22333333 3333333333322 4466777888888888888888888887766544443322   1223456777777


Q ss_pred             HHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCChHHHHHH-------HHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 047067          179 ALRTFSEMLREG------FEPTHFSYSSVFTALASTGSLEQGKWV-------HAHVIKSGGQLVAFVGNTLVDMYAKSGS  245 (566)
Q Consensus       179 A~~~~~~m~~~g------~~pd~~t~~~ll~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~  245 (566)
                      |+..+......-      ..--..++..+...+...|-...+..+       +...+......+...|-.+.        
T Consensus       649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as--------  720 (1238)
T KOG1127|consen  649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS--------  720 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh--------
Confidence            777776654321      111112333333333333332223222       22222222222222222222        


Q ss_pred             HHHHHHHHHhcCCCChh--HHHHHHHH-HHHcCCH---H---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cC--
Q 047067          246 IEDAEKVFNRLLKRDVV--SWNSMLTG-CAQHGLG---K---ATVRWFEKMLRNGIAPNQVTFLCVLTACSH----AG--  310 (566)
Q Consensus       246 ~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g--  310 (566)
                        +|..+|-... |+.+  .+-.++.. .-..+..   +   -+.+.+-.-+.  ...+..+|..|+..|.+    .+  
T Consensus       721 --dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et  795 (1238)
T KOG1127|consen  721 --DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGET  795 (1238)
T ss_pred             --HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCc
Confidence              2333333332 2211  11111111 1111111   1   01111111111  11223444444443332    11  


Q ss_pred             --CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047067          311 --LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAA  386 (566)
Q Consensus       311 --~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  386 (566)
                        +...|...+....+.. ..+...|+.|.- +...|.+.-|...|-+. -..| ...+|..+.-.+..+.+++-|..++
T Consensus       796 ~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af  873 (1238)
T KOG1127|consen  796 MKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF  873 (1238)
T ss_pred             chhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence              2234555553333321 234455555543 36667777777776554 2234 5678888888888999999999999


Q ss_pred             HHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067          387 ERIFELDPHDSGPHILLANIYASAGRLNDAARARKM  422 (566)
Q Consensus       387 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  422 (566)
                      .++..++|.+...+...+.+-...|+.-++..+|..
T Consensus       874 ~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  874 SSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             HhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            999999999888887777777777877777777765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.42  E-value=2.1e-05  Score=74.65  Aligned_cols=216  Identities=13%  Similarity=0.064  Sum_probs=118.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChH
Q 047067          134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP-THFSYSSVFTALASTGSLE  212 (566)
Q Consensus       134 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~  212 (566)
                      -+.+.|...|+.+.+..-...-..|.......+...+...++-+.++.-+++.......+ +..........+...|+++
T Consensus        40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~  119 (290)
T PF04733_consen   40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE  119 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred             HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence            344556666666655544444444455544444333332234445555554443333222 2233333334556677788


Q ss_pred             HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHH----HcCCHHHHHHHHHHH
Q 047067          213 QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV-VSWNSMLTGCA----QHGLGKATVRWFEKM  287 (566)
Q Consensus       213 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~----~~g~~~~A~~~~~~m  287 (566)
                      +|.+++...      .+.......+.+|.+.++++.|.+.++.|.+.+. .+...+..++.    -.+.+.+|..+|+++
T Consensus       120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El  193 (290)
T PF04733_consen  120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL  193 (290)
T ss_dssp             HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            777766532      3455556677888888888888888888864422 22223333332    233578888888887


Q ss_pred             HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCH-HHHHHHHHhC
Q 047067          288 LRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLL-DRALKFIREM  357 (566)
Q Consensus       288 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~  357 (566)
                      .+. ..++..+.+.+..++...|++++|.+++....... +-+..+...++-...-.|+. +.+.+++.++
T Consensus       194 ~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  194 SDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             Hhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            664 56677778888888888888888888874443322 22344455555555555655 4555666665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.40  E-value=5.3e-05  Score=67.81  Aligned_cols=155  Identities=11%  Similarity=0.098  Sum_probs=113.4

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067          237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  316 (566)
                      +-.|...|+++......+.+..+.        ..|...++.++++..+++.++.. +.|...|..+...|...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456777888777655544432221        01223566778888888877753 346778888888999999999999


Q ss_pred             HHHHhHHhhCCCccHHHHHHHHHH-hhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          317 GYFALMKKHGVEPEEAHYVTFVDL-LGRAGL--LDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       317 ~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      ..|+...+.. +.+...+..+..+ +.+.|+  .++|.+++++. ...| +...+..+...+...|++++|+..++++++
T Consensus        94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370         94 LAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9997666654 3356777777776 467777  59999999988 5566 567888888899999999999999999999


Q ss_pred             cCCCCCchHH
Q 047067          392 LDPHDSGPHI  401 (566)
Q Consensus       392 ~~p~~~~~~~  401 (566)
                      +.|.+..-+.
T Consensus       173 l~~~~~~r~~  182 (198)
T PRK10370        173 LNSPRVNRTQ  182 (198)
T ss_pred             hCCCCccHHH
Confidence            9987764443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.39  E-value=9e-05  Score=80.24  Aligned_cols=227  Identities=12%  Similarity=0.126  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHh-CC---CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHHHHH
Q 047067          195 HFSYSSVFTALASTGSLEQGKWVHAHVIKS-GG---QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR-D-VVSWNSML  268 (566)
Q Consensus       195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li  268 (566)
                      ...|..-+....+.++.+.|+++.+++++. ++   .--.-+|.+++++-..-|.-+...++|++..+- | ...|..|.
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            455666677777788888888888877653 11   122346777777777777778888888888543 3 45688888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc---HHHHHHHHHHhhhcC
Q 047067          269 TGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE---EAHYVTFVDLLGRAG  345 (566)
Q Consensus       269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g  345 (566)
                      ..|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++....+.  -|.   .....-.+++-.+.|
T Consensus      1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred             HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcC
Confidence            8888888999999999998876 4446678888888888888888888888444432  233   334455566777889


Q ss_pred             CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCch-HHHHHHHHHhcCChhHHHHHH
Q 047067          346 LLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELD--PHDSGP-HILLANIYASAGRLNDAARAR  420 (566)
Q Consensus       346 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~-~~~l~~~~~~~g~~~~a~~~~  420 (566)
                      +.+++..+|+.. .-.| ....|+.++..-.++|+.+.+..+|++++.+.  |..... |...+..-.+.|+-+.+..+-
T Consensus      1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred             CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence            999999999877 2233 55789999999999999999999999998765  444333 333444334456655555554


Q ss_pred             HHHH
Q 047067          421 KMMK  424 (566)
Q Consensus       421 ~~m~  424 (566)
                      .++.
T Consensus      1695 arA~ 1698 (1710)
T KOG1070|consen 1695 ARAK 1698 (1710)
T ss_pred             HHHH
Confidence            4444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=2.9e-05  Score=76.68  Aligned_cols=245  Identities=9%  Similarity=0.001  Sum_probs=173.9

Q ss_pred             HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 047067          169 GHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIED  248 (566)
Q Consensus       169 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  248 (566)
                      -+.++|+..+|.-.|+..++.+ +-+...|..|....+..++-..|...+.+.++.. +.+..+.-+|.-.|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence            3567888888888888887764 3355677777777777888888888888888876 5567777778888888888888


Q ss_pred             HHHHHHhcCCCC-hhHHHHHH---------HHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 047067          249 AEKVFNRLLKRD-VVSWNSML---------TGCAQHGLGKATVRWFEKMLR-NGIAPNQVTFLCVLTACSHAGLLDEGQG  317 (566)
Q Consensus       249 A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~  317 (566)
                      |.+.++.-.... ...|...-         ..+..........++|-++.. .+.++|......|.-.|--.|.+++|..
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            888887652110 00000000         111122223445556655544 4545777788888888888999999999


Q ss_pred             HHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067          318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      .|+....-. +-|...||.|.-.++...+.++|...|++. .++|.- .++..|.-+|...|.+++|.+.+-.++.+.+.
T Consensus       452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            996665532 446779999999999999999999999998 888976 48888889999999999999999999987544


Q ss_pred             C----------CchHHHHHHHHHhcCChhHH
Q 047067          396 D----------SGPHILLANIYASAGRLNDA  416 (566)
Q Consensus       396 ~----------~~~~~~l~~~~~~~g~~~~a  416 (566)
                      +          ..++..|=.++.-.++.|.+
T Consensus       531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  531 SRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             ccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            1          12455555555555555433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.38  E-value=6.8e-05  Score=76.13  Aligned_cols=216  Identities=14%  Similarity=0.123  Sum_probs=168.0

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047067          125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA  204 (566)
Q Consensus       125 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~  204 (566)
                      ++|--.....+...+.++|-...|..+|+++     ..|...|..|...|+..+|..+..+-.+  -+||...|..+.+.
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV  466 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence            4555556677888999999999999999985     5688889999999999999998888776  37899999988888


Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHH
Q 047067          205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATV  281 (566)
Q Consensus       205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~  281 (566)
                      ..+..-+++|.++.++....       .-..+.......++++++.+.|+.-.+-   -..+|-....+..+.+++..|.
T Consensus       467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence            88777788888887765332       1112222223368888898888865433   4568888888888999999999


Q ss_pred             HHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          282 RWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       282 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      +.|..-..  ..|| ...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++
T Consensus       540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            99988877  4665 5689999999999999999999997777766 334456666777778889999999988877

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.36  E-value=2.2e-05  Score=79.56  Aligned_cols=189  Identities=15%  Similarity=0.139  Sum_probs=152.2

Q ss_pred             CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047067          226 GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA  305 (566)
Q Consensus       226 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  305 (566)
                      ++|-...-..+...+.++|-...|..+|+++     ..|.-.|.+|...|+..+|..+..+-.+  -+||+.-|..+...
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV  466 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence            4555556677889999999999999999974     5788899999999999999999998887  47899999999888


Q ss_pred             HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 047067          306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGA  383 (566)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~  383 (566)
                      .-...-+++|.++++.....       .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++.+.|.
T Consensus       467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence            88778888999888432211       1112223334578899998888765 5555 4578888888888889999999


Q ss_pred             HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       384 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      +.|.+.+.++|++...|+++..+|.+.|+..+|...+++..+.+.
T Consensus       540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~  584 (777)
T KOG1128|consen  540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY  584 (777)
T ss_pred             HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999888763

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.36  E-value=5.1e-05  Score=80.49  Aligned_cols=188  Identities=9%  Similarity=0.024  Sum_probs=133.6

Q ss_pred             HHHHHHhccCChHHH-HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcC
Q 047067          200 SVFTALASTGSLEQG-KWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHG  275 (566)
Q Consensus       200 ~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g  275 (566)
                      .+=.+.+..|..+++ .+++.++.+            ++...+......+++.-.....   ..++..+-.|.....+.|
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g  100 (694)
T PRK15179         33 LLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAH  100 (694)
T ss_pred             HHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC
Confidence            333455666766554 666666532            3333333333333222222221   235778888889999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH
Q 047067          276 LGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI  354 (566)
Q Consensus       276 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  354 (566)
                      ++++|..+++...+  +.|+ ......+...+.+.+.+++|....+...... +-+......+..++.+.|++++|..+|
T Consensus       101 ~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y  177 (694)
T PRK15179        101 RSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACF  177 (694)
T ss_pred             CcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence            99999999999998  5776 4566777888999999999999997666543 335667777888899999999999999


Q ss_pred             HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047067          355 REM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHIL  402 (566)
Q Consensus       355 ~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  402 (566)
                      ++. .-.|+ ..+|.++..++...|+.++|...|+++++...+....|+.
T Consensus       178 ~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~  227 (694)
T PRK15179        178 ERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR  227 (694)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence            988 23454 5788889999999999999999999999876554445443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=0.00016  Score=70.94  Aligned_cols=366  Identities=16%  Similarity=0.064  Sum_probs=214.3

Q ss_pred             HHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCh-hHHHHHHHHHccCCCchH
Q 047067           36 AYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQ-FTLSSVLKASGAGATDDK  111 (566)
Q Consensus        36 ~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~  111 (566)
                      .....|+++.|...|-+..   ++|-+.|..-..+|+..|++++|++=-.+-++  +.|+. .-|+-.-.++.-.|+++ 
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~-   87 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE-   87 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH-
Confidence            3446899999999998643   66888899999999999999999876666555  46764 46777777788888888 


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhCCCCChHHHHHH-----HHHHHhCCChhHHHHHHHH
Q 047067          112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDA-WFLFTALESKNEVSWNAL-----IAGHARKSEGEKALRTFSE  185 (566)
Q Consensus       112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~  185 (566)
                      .+..-+..-++.. +.+...++.|.+++    ..+.+ .+.|.     ++..|..+     .+.+...-.+..-++.++.
T Consensus        88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~  157 (539)
T KOG0548|consen   88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK  157 (539)
T ss_pred             HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence            7777777666553 45567778888777    11111 11111     11111111     1111111111111111111


Q ss_pred             HHHC-CCCCCHHHHHHHHHHHhccC-------------------ChH----HHHHHHHHHHH-hCCCCcHhHHHHHHHHH
Q 047067          186 MLRE-GFEPTHFSYSSVFTALASTG-------------------SLE----QGKWVHAHVIK-SGGQLVAFVGNTLVDMY  240 (566)
Q Consensus       186 m~~~-g~~pd~~t~~~ll~~~~~~~-------------------~~~----~a~~~~~~~~~-~~~~~~~~~~~~li~~~  240 (566)
                      -... +...+   ...++.+.....                   .+.    ..........+ .....-..-...+.++.
T Consensus       158 ~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa  234 (539)
T KOG0548|consen  158 NPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA  234 (539)
T ss_pred             CcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence            0000 00000   000111111000                   000    00000000000 00000011234567777


Q ss_pred             HhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHccCCH
Q 047067          241 AKSGSIEDAEKVFNRLLK--RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP--N----QVTFLCVLTACSHAGLL  312 (566)
Q Consensus       241 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~  312 (566)
                      .+..+++.|++-+.....  .++.-++....+|...|.+.+....-....+.|-.-  +    ...+..+..++.+.+++
T Consensus       235 ykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~  314 (539)
T KOG0548|consen  235 YKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY  314 (539)
T ss_pred             HHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence            777888888888877643  344456667777888888888877777766655321  1    12333444566777888


Q ss_pred             HHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047067          313 DEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIF  390 (566)
Q Consensus       313 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~  390 (566)
                      +.++..|.......-.|+.         +.+....+++....+.. -+.|+. .--..=.+.+.+.|++..|+..|.+++
T Consensus       315 ~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI  385 (539)
T KOG0548|consen  315 EGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI  385 (539)
T ss_pred             HHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            8899988543333333332         33445556666655554 334544 223333677889999999999999999


Q ss_pred             hcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          391 ELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       391 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +.+|+|+..|...+-+|.+.|.+..|.+--+...+.
T Consensus       386 kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  386 KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            999999999999999999999999999877666654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.32  E-value=8.3e-05  Score=66.55  Aligned_cols=117  Identities=14%  Similarity=0.088  Sum_probs=57.4

Q ss_pred             HHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047067          302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNV  379 (566)
Q Consensus       302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~  379 (566)
                      .+....+.|++.+|...+.+.... -++|...|+.+.-+|.+.|++++|..-|.+. .+.| +....+.+...+.-.|+.
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~  184 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL  184 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence            444444445555555555333322 2344455555555555555555555544444 2233 234445555555555555


Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067          380 ELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA  419 (566)
Q Consensus       380 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  419 (566)
                      +.|+.++.......+.+..+-..|..+-...|++++|..+
T Consensus       185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            5555555555555554555555555555555555555443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.30  E-value=1e-06  Score=54.07  Aligned_cols=35  Identities=37%  Similarity=0.691  Sum_probs=33.1

Q ss_pred             chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCh
Q 047067           59 VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQ   93 (566)
Q Consensus        59 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~   93 (566)
                      ++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.30  E-value=8.5e-05  Score=69.04  Aligned_cols=182  Identities=13%  Similarity=0.038  Sum_probs=128.7

Q ss_pred             CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh---HH
Q 047067          193 PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQL--VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DVV---SW  264 (566)
Q Consensus       193 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~  264 (566)
                      .....+......+...|+++.|...++.+++.....  ....+..+..+|.+.|++++|...|+++.+  | +..   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            345677788888999999999999999998865321  124667788999999999999999999843  2 222   46


Q ss_pred             HHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHH
Q 047067          265 NSMLTGCAQH--------GLGKATVRWFEKMLRNGIAPNQV-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYV  335 (566)
Q Consensus       265 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  335 (566)
                      ..+..++.+.        |+.++|++.|+++...  .|+.. ....+.....    .      ....        .....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~--------~~~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL--------AGKEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH--------HHHHH
Confidence            6666666655        7899999999999885  45532 2221111100    0      0000        01122


Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067          336 TFVDLLGRAGLLDRALKFIREM----PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDP  394 (566)
Q Consensus       336 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  394 (566)
                      .+...|.+.|++++|...+++.    |-.| ....|..+..++...|+.++|...++.+....|
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5667788999999999998887    3234 346888999999999999999998888776555

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.29  E-value=0.001  Score=70.04  Aligned_cols=174  Identities=10%  Similarity=0.026  Sum_probs=121.5

Q ss_pred             HHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHH
Q 047067          247 EDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK  323 (566)
Q Consensus       247 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  323 (566)
                      ..|+..+.+..   ..+...||+|.-. ...|.+.-|..-|-+-... .+.+..+|..+.-.|.+..+++.|...|.+.+
T Consensus       800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q  877 (1238)
T KOG1127|consen  800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ  877 (1238)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence            45666666553   4577888887766 5567777777777666554 23367788888888899999999999998765


Q ss_pred             hhCCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHH----------
Q 047067          324 KHGVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPTAAVWGALLGACRMHKNVELGAYA----------  385 (566)
Q Consensus       324 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~----------  385 (566)
                      ..  .| +...|--........|+.-++..+|..-       +-.|+..-|-....-...+|+.++-+..          
T Consensus       878 SL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a  955 (1238)
T KOG1127|consen  878 SL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA  955 (1238)
T ss_pred             hc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence            43  44 3445544444455678888888888652       3346666666655556677776654444          


Q ss_pred             HHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067          386 AERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       386 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      .++.+.-.|+...+|...+....+.+.+.+|.....+..
T Consensus       956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            444455679998899999999999999988888776654

>PLN02789 farnesyltranstransferase

Probab=98.27  E-value=0.0013  Score=63.32  Aligned_cols=176  Identities=11%  Similarity=0.035  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067          130 YVGSSLLDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKS-EGEKALRTFSEMLREGFEPTHFSYSSVFTAL  205 (566)
Q Consensus       130 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~  205 (566)
                      .++..+-..+...++.++|+.+.+++.+.   +..+|+..-..+...| ++++++..++++.+... -+..+|..-.-.+
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l  116 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence            34556666777888999999999987764   4556776666777777 67999999999988642 2334455444344


Q ss_pred             hccCC--hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc---CCH
Q 047067          206 ASTGS--LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQH---GLG  277 (566)
Q Consensus       206 ~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~  277 (566)
                      .+.+.  .+.+..+...+++.. +-+..+|+....++.+.|+++++++.++++.+   .|..+|+.....+.+.   |..
T Consensus       117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence            44554  255666666666655 45566666666666666777777777776643   3555666655554443   212


Q ss_pred             ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067          278 ----KATVRWFEKMLRNGIAPNQVTFLCVLTACSH  308 (566)
Q Consensus       278 ----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  308 (566)
                          +++++...+++... +-|...|+.+...+..
T Consensus       196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD  229 (320)
T ss_pred             cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence                34455554555431 1234445444444444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=0.00022  Score=73.27  Aligned_cols=151  Identities=10%  Similarity=0.022  Sum_probs=102.3

Q ss_pred             CCCcchHHHHHH--HHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHh-C-------
Q 047067           55 VKDMVTWTALIS--GYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKY-G-------  124 (566)
Q Consensus        55 ~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~-g-------  124 (566)
                      .-|..|-.+|+.  -|.--|+.+.|.+-.+-++      +...|..+.+.|.+..+++ .++..+..|... |       
T Consensus       723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLD-VAkVClGhm~~aRgaRAlR~a  795 (1416)
T KOG3617|consen  723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLD-VAKVCLGHMKNARGARALRRA  795 (1416)
T ss_pred             ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhcccc-HHHHhhhhhhhhhhHHHHHHH
Confidence            347777778874  4777899999988776554      3467999999999999998 888777776532 1       


Q ss_pred             -CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047067          125 -YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFT  203 (566)
Q Consensus       125 -~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  203 (566)
                       -.++ ..-.-..-.-...|.+++|..+|.+.+.     |..|=..|...|.+++|+++-+.=-+-.+   ..||..-..
T Consensus       796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~  866 (1416)
T KOG3617|consen  796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK  866 (1416)
T ss_pred             HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence             1121 2223333345567888999999888665     33455667788999999887654322222   246666666


Q ss_pred             HHhccCChHHHHHHHHHH
Q 047067          204 ALASTGSLEQGKWVHAHV  221 (566)
Q Consensus       204 ~~~~~~~~~~a~~~~~~~  221 (566)
                      -+...++.+.|.+.|++.
T Consensus       867 ~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  867 YLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHhhccHHHHHHHHHhc
Confidence            667778888888887753

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.25  E-value=0.00041  Score=74.56  Aligned_cols=45  Identities=16%  Similarity=0.234  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      .++-.+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus       224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            344444455555556666666666666666665555555555554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.24  E-value=9.8e-05  Score=66.11  Aligned_cols=135  Identities=16%  Similarity=0.089  Sum_probs=110.2

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047067          293 APNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALL  370 (566)
Q Consensus       293 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll  370 (566)
                      .|+......+-.++...|+-+....+...... ..+.|......++....+.|++.+|...|++.  +-.||...|+.+.
T Consensus        63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             CcchHHHHHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            45433335566677777887777777744222 22445566667899999999999999999998  4345889999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      -+|-+.|+.++|...|.+++++.|.++.+.+.|+-.|.-.|+++.|..++......+.
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999999998876543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.22  E-value=1.8e-05  Score=66.38  Aligned_cols=97  Identities=25%  Similarity=0.307  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..++.+|.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            344556677788888888888888876 4345 55777888888888889999999999988889988888888999999


Q ss_pred             hcCChhHHHHHHHHHHhCC
Q 047067          409 SAGRLNDAARARKMMKESG  427 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~~~g  427 (566)
                      ..|++++|...++...+..
T Consensus        97 ~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        97 ALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HcCCHHHHHHHHHHHHHhc
Confidence            9999999999888887643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.22  E-value=2.4e-06  Score=52.38  Aligned_cols=35  Identities=29%  Similarity=0.647  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ  296 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  296 (566)
                      .+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.18  E-value=0.0005  Score=73.11  Aligned_cols=144  Identities=15%  Similarity=0.102  Sum_probs=117.5

Q ss_pred             CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 047067          225 GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL--KR-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFL  300 (566)
Q Consensus       225 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~  300 (566)
                      ..+.+...+-.|.......|.+++|+.+++...  .| +...+..+...+.+.+++++|+..+++....  .|+ .....
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~  158 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL  158 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence            346668888899999999999999999999984  34 5677888999999999999999999999984  565 55566


Q ss_pred             HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 047067          301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLG  371 (566)
Q Consensus       301 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~  371 (566)
                      .+..++.+.|.+++|..+|+.+...+ +-+...+..+...+-..|+.++|...|++.  ...|-...|+.++.
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~  230 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV  230 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence            67778889999999999997777633 334778888999999999999999999988  33455566665553

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.16  E-value=3.1e-06  Score=51.49  Aligned_cols=34  Identities=32%  Similarity=0.644  Sum_probs=31.9

Q ss_pred             cchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC
Q 047067           58 MVTWTALISGYSQNDQPENAIILFSQMLRLGLKP   91 (566)
Q Consensus        58 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p   91 (566)
                      +.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999999988

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.00061  Score=61.16  Aligned_cols=88  Identities=16%  Similarity=0.121  Sum_probs=69.5

Q ss_pred             HHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH
Q 047067          338 VDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND  415 (566)
Q Consensus       338 i~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  415 (566)
                      |....-.+.+.+|.-+|++|  ...|+..+.+....++...|++++|+.+++.++..+++++.+...++-.-...|+-.+
T Consensus       180 v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  180 VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence            33344456688888899988  3678888889899999999999999999999999999999998888888888888766


Q ss_pred             HH-HHHHHHHh
Q 047067          416 AA-RARKMMKE  425 (566)
Q Consensus       416 a~-~~~~~m~~  425 (566)
                      +. +...+.+.
T Consensus       260 ~~~r~l~QLk~  270 (299)
T KOG3081|consen  260 VTERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHHHh
Confidence            54 44455443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.07  E-value=7.5e-06  Score=49.76  Aligned_cols=34  Identities=32%  Similarity=0.704  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP  294 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  294 (566)
                      +.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3578888888888899999999999998888887

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.05  E-value=0.00021  Score=70.20  Aligned_cols=129  Identities=10%  Similarity=0.077  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047067          231 FVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG  310 (566)
Q Consensus       231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g  310 (566)
                      ....+|+..+...++++.|+.+|+++.+.++..+-.++..+...++-.+|++++++.+... +-+...+..-...|.+.+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            3445566677778889999999999987777777778888888888889999999888642 224555555566678888


Q ss_pred             CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 047067          311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEP  361 (566)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p  361 (566)
                      +++.|..+.+.+.... +-+..+|..|...|.+.|++++|+-.++.+|+.|
T Consensus       249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            8999999886665532 3345688889999999999999999888887554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.04  E-value=0.0019  Score=63.16  Aligned_cols=138  Identities=15%  Similarity=0.108  Sum_probs=74.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcC
Q 047067          268 LTGCAQHGLGKATVRWFEKMLRNGIAPNQV-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAG  345 (566)
Q Consensus       268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g  345 (566)
                      ...+...|++++|+..++.++..  .||.. ........+...++..+|.+.++.+...  .|+ ....-.+.++|.+.|
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g  388 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG  388 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence            33344556666666666666553  33333 3333344555666666666666444432  233 334444556666666


Q ss_pred             CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          346 LLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       346 ~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      ++.+|..++++.  ...-|+..|..|..+|...|+..++...                 .+..|...|+|++|.......
T Consensus       389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHH
Confidence            666666666655  2222455666666666666665554333                 233455566666666666666


Q ss_pred             HhC
Q 047067          424 KES  426 (566)
Q Consensus       424 ~~~  426 (566)
                      .++
T Consensus       452 ~~~  454 (484)
T COG4783         452 SQQ  454 (484)
T ss_pred             HHh
Confidence            554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.0072  Score=54.48  Aligned_cols=246  Identities=9%  Similarity=-0.033  Sum_probs=153.0

Q ss_pred             cCCHHHHHHHHHhCC-C-CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH-HHHH
Q 047067          142 FDQMDDAWFLFTALE-S-KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQG-KWVH  218 (566)
Q Consensus       142 ~g~~~~A~~~f~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a-~~~~  218 (566)
                      .|.+..++..-.... . .++..---|-++|...|.+...+.-   ... |-.|....+..+......-++.+.- ..+.
T Consensus        21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~   96 (299)
T KOG3081|consen   21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILASLY   96 (299)
T ss_pred             hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence            355555554433322 2 2333334455667777766544332   222 1234444444444444444443332 3444


Q ss_pred             HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047067          219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT  298 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  298 (566)
                      +.+.......+......-...|.+.|++++|.+.......-.....|  ...+.+..+.+-|...+++|++-   -+..|
T Consensus        97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~t  171 (299)
T KOG3081|consen   97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDAT  171 (299)
T ss_pred             HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence            55555544555444455566788999999999998874333333333  44556777889999999999883   26778


Q ss_pred             HHHHHHHHHc----cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 047067          299 FLCVLTACSH----AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGA  372 (566)
Q Consensus       299 ~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~  372 (566)
                      .+.|.+++.+    .+.+.+|.-+|+.+.+ ..+|+..+.+-..-+....|++++|..++++.  ....++.+...++.+
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~  250 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL  250 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            8777777654    4568888889977654 35678888888888888899999999999888  323466677666666


Q ss_pred             HHhcCCH-HHHHHHHHHHHhcCCCCC
Q 047067          373 CRMHKNV-ELGAYAAERIFELDPHDS  397 (566)
Q Consensus       373 ~~~~g~~-~~a~~~~~~~~~~~p~~~  397 (566)
                      -...|.. +...+...++....|..+
T Consensus       251 a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  251 ALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHhCCChHHHHHHHHHHHhcCCcch
Confidence            5555544 555677777777788765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.99  E-value=0.00027  Score=59.12  Aligned_cols=113  Identities=10%  Similarity=0.061  Sum_probs=86.0

Q ss_pred             HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 047067          283 WFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE  360 (566)
Q Consensus       283 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~  360 (566)
                      .|++...  ..|+ ......+...+...|++++|...++.....+ +.+...+..+...|.+.|++++|...+++. ...
T Consensus         5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4555555  3443 3445566677778888888888886666544 446677888888888999999999988877 444


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067          361 P-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG  398 (566)
Q Consensus       361 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  398 (566)
                      | +...+..+...+...|+.+.|...++++++++|++..
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            5 5677778888899999999999999999999998864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.98  E-value=0.0012  Score=64.42  Aligned_cols=177  Identities=16%  Similarity=0.069  Sum_probs=126.1

Q ss_pred             CHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047067          245 SIEDAEKVFNRLLK------RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGY  318 (566)
Q Consensus       245 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  318 (566)
                      ++.+++..-+.++.      ++...+...+.+.........+-.++.+ ... ..-...-|..-+ .....|.+++|+..
T Consensus       252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~  328 (484)
T COG4783         252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAK-RSK-RGGLAAQYGRAL-QTYLAGQYDEALKL  328 (484)
T ss_pred             HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHH-HhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence            34555555555543      2444555555544433333333333222 222 111223333333 44567999999999


Q ss_pred             HHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067          319 FALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHD  396 (566)
Q Consensus       319 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  396 (566)
                      +..+... .+-|........+.+.+.|+.++|.+.++++ ...|+ ...+-++..++...|++++|+..+++...-+|++
T Consensus       329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            9665543 3445666677789999999999999999998 66777 5788888999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          397 SGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       397 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      +..|..|+.+|...|+..++.....++..
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            99999999999999999999988877754

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.97  E-value=0.00027  Score=69.49  Aligned_cols=121  Identities=18%  Similarity=0.115  Sum_probs=54.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067          134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ  213 (566)
Q Consensus       134 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~  213 (566)
                      +|+..+...++++.|..+|+++.+.++..+..++..+...++..+|++++++..... +-|...+..-...+.+.++.+.
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence            344444445555555555555555544444455555555555555555555555331 1222333333333444444444


Q ss_pred             HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 047067          214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL  256 (566)
Q Consensus       214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  256 (566)
                      |..+.+++.+.. +.+-.+|..|..+|.+.|+++.|+..++.+
T Consensus       253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            444444444432 222334444444444444444444444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.0023  Score=57.12  Aligned_cols=169  Identities=17%  Similarity=0.143  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047067          233 GNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSM---LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA  309 (566)
Q Consensus       233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  309 (566)
                      |..+.-+...+|+.+.|..+++.+..+-+.++...   ..-+-..|++++|+++++.+++.. +.|.+++-.=+...-..
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~  133 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ  133 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence            34444555667788888888777643222222111   112345788999999999999875 44667776666666667


Q ss_pred             CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHH
Q 047067          310 GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM---HKNVELGAY  384 (566)
Q Consensus       310 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~  384 (566)
                      |+--+|++-+....+ .+..|.+.|.-+.+.|...|+++.|.-.++++ -+.| +...+..+...+-.   ..+.+.+.+
T Consensus       134 GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark  212 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK  212 (289)
T ss_pred             CCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            777788877733332 25778999999999999999999999999998 3456 34445555544332   347788999


Q ss_pred             HHHHHHhcCCCCCchHHHH
Q 047067          385 AAERIFELDPHDSGPHILL  403 (566)
Q Consensus       385 ~~~~~~~~~p~~~~~~~~l  403 (566)
                      .+.+++++.|.+...+.-+
T Consensus       213 yy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  213 YYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHhChHhHHHHHHH
Confidence            9999999999665444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.94  E-value=0.0058  Score=66.02  Aligned_cols=171  Identities=12%  Similarity=0.121  Sum_probs=95.4

Q ss_pred             CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHH
Q 047067           55 VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSS  134 (566)
Q Consensus        55 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~  134 (566)
                      ..+...|..|+..|...+++++|.++.+.-.+.  .|+...+-..+..                                
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~--------------------------------   73 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI--------------------------------   73 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--------------------------------
Confidence            345667778888888888888888887765553  4554433222211                                


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 047067          135 LLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQG  214 (566)
Q Consensus       135 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a  214 (566)
                         .|.+.++.+++..+             .++.......++.-+..+...|...  .-+...+-.+..+|-+.|+.+++
T Consensus        74 ---l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka  135 (906)
T PRK14720         74 ---LSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKL  135 (906)
T ss_pred             ---HHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHH
Confidence               22222332222211             2233333333443333333344332  22334555666666666667777


Q ss_pred             HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047067          215 KWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN  290 (566)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  290 (566)
                      ..+++++++.. +.|+.+.|.+...|+.. ++++|++++.+.           +..|...+++.++.++|.++...
T Consensus       136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence            77776666666 55666667777777777 777777766553           22355566677777777777663

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.90  E-value=1.3e-05  Score=47.43  Aligned_cols=31  Identities=42%  Similarity=0.670  Sum_probs=27.4

Q ss_pred             chHHHHHHHHHhCCCccHHHHHHHHHHHCCC
Q 047067           59 VTWTALISGYSQNDQPENAIILFSQMLRLGL   89 (566)
Q Consensus        59 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~   89 (566)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4799999999999999999999999988774

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.89  E-value=0.00016  Score=55.71  Aligned_cols=92  Identities=23%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067          334 YVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG  411 (566)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  411 (566)
                      +..+...+...|++++|...+++. ...| +...+..+...+...++++.|...+++.++..|.+...+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455667778889999999988876 3344 34677778888888899999999999999999988888889999999999


Q ss_pred             ChhHHHHHHHHHHh
Q 047067          412 RLNDAARARKMMKE  425 (566)
Q Consensus       412 ~~~~a~~~~~~m~~  425 (566)
                      ++++|...+....+
T Consensus        83 ~~~~a~~~~~~~~~   96 (100)
T cd00189          83 KYEEALEAYEKALE   96 (100)
T ss_pred             hHHHHHHHHHHHHc
Confidence            99999999888765

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.88  E-value=1.7e-05  Score=60.08  Aligned_cols=78  Identities=23%  Similarity=0.358  Sum_probs=57.5

Q ss_pred             cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067          344 AGLLDRALKFIREM----PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA  419 (566)
Q Consensus       344 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  419 (566)
                      .|++++|..+++++    +..|+...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46777788877777    2222455666678888888888888888888 667777766777788888899999999888


Q ss_pred             HHH
Q 047067          420 RKM  422 (566)
Q Consensus       420 ~~~  422 (566)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.87  E-value=4.5e-05  Score=55.25  Aligned_cols=64  Identities=20%  Similarity=0.201  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 047067          362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG-RLNDAARARKMMKE  425 (566)
Q Consensus       362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~  425 (566)
                      ++.+|..+...+...|++++|+..|+++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999 79999999998865

...

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.82  E-value=2.4e-05  Score=46.29  Aligned_cols=31  Identities=29%  Similarity=0.585  Sum_probs=25.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGI  292 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  292 (566)
                      ++||+|+.+|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788888888888888888888888888764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.82  E-value=0.066  Score=56.51  Aligned_cols=409  Identities=15%  Similarity=0.136  Sum_probs=230.4

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHH
Q 047067            5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNA--YAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAII   79 (566)
Q Consensus         5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~   79 (566)
                      .+++..|.+-.+.+++.  .|+.. |...+.+  ..|.|+.++|..+++...   ..|..|...+-..|...++.++|..
T Consensus        22 ~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45677788888877775  34433 3333444  357899999999998764   3477889999999999999999999


Q ss_pred             HHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----------CHHHHH
Q 047067           80 LFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD----------QMDDAW  149 (566)
Q Consensus        80 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~~~A~  149 (566)
                      +|++....  -|+..-...+..++.+.++.. .-+++--.+.+ .++..++.+=++++.+...-          -+.-|.
T Consensus        99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk-~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   99 LYERANQK--YPSEELLYHLFMAYVREKSYK-KQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHhh--CCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            99998864  688888888889998888877 43433333333 35566677767777665532          123466


Q ss_pred             HHHHhCCCCC-----hHHHHHHHHHHHhCCChhHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067          150 FLFTALESKN-----EVSWNALIAGHARKSEGEKALRTFSE-MLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK  223 (566)
Q Consensus       150 ~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  223 (566)
                      +.++.+.+.+     ..-.-.-....-..|++++|++++.. ..+.-..-+...-+.-+..+...+++.+..++-.+++.
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            6666665543     11111222344567889999999843 33332333444555667777888888888888888888


Q ss_pred             hCCCCcHhHHHHHHHHH----------------HhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHH---HHcCCHHHHHHH
Q 047067          224 SGGQLVAFVGNTLVDMY----------------AKSGSIEDAEKVFNRLLKR-DVVSWNSMLTGC---AQHGLGKATVRW  283 (566)
Q Consensus       224 ~~~~~~~~~~~~li~~~----------------~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~g~~~~A~~~  283 (566)
                      .|...    |...++.+                ...+.++...+..++.... .-..|-+-+.++   -.-|+.++++..
T Consensus       255 k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~  330 (932)
T KOG2053|consen  255 KGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY  330 (932)
T ss_pred             hCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence            87332    33323222                2223333333333333211 111222223333   345777776554


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHH-------HHHHHHHHhhhcCCH-----HHHH
Q 047067          284 FEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEA-------HYVTFVDLLGRAGLL-----DRAL  351 (566)
Q Consensus       284 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~  351 (566)
                      |-+-.  |-+|   .+..=+..|...=..++-..++.+....  .++..       -+.+.+....-.|.+     +.-.
T Consensus       331 y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~  403 (932)
T KOG2053|consen  331 YFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL  403 (932)
T ss_pred             HHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence            43322  2222   1111111222111222222222111110  11100       011222222222211     1111


Q ss_pred             HHHHhC------C------CCCC---------HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067          352 KFIREM------P------IEPT---------AAVWGALLGACRMHKNVE---LGAYAAERIFELDPHDSGPHILLANIY  407 (566)
Q Consensus       352 ~~~~~~------~------~~p~---------~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~  407 (566)
                      .++.+.      +      .-|.         ..+.+.|+..+.+.++..   +|+-+++..+...|.|...-..|+.+|
T Consensus       404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY  483 (932)
T KOG2053|consen  404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIY  483 (932)
T ss_pred             HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            111111      1      1121         124567778888877654   677777777788888888888899999


Q ss_pred             HhcCChhHHHHHHHHHHhCCCccC
Q 047067          408 ASAGRLNDAARARKMMKESGVKKE  431 (566)
Q Consensus       408 ~~~g~~~~a~~~~~~m~~~g~~~~  431 (566)
                      .-.|-+..|..+++.+--+.++.+
T Consensus       484 ~~lGa~p~a~~~y~tLdIK~IQ~D  507 (932)
T KOG2053|consen  484 SYLGAFPDAYELYKTLDIKNIQTD  507 (932)
T ss_pred             HHhcCChhHHHHHHhcchHHhhhc
Confidence            999999999999888865555433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.81  E-value=0.0003  Score=57.22  Aligned_cols=93  Identities=15%  Similarity=0.061  Sum_probs=57.4

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 047067          334 YVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHD---SGPHILLAN  405 (566)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~  405 (566)
                      +..++..+.+.|++++|.+.|+++ ...|+    ...+..+..++...|+++.|...+++++...|++   +.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            444555666666666666666665 22232    2344556666666777777777777777666654   345666667


Q ss_pred             HHHhcCChhHHHHHHHHHHhC
Q 047067          406 IYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       406 ~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +|.+.|++++|.+.++.+.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            777777777777777766654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.80  E-value=0.002  Score=54.63  Aligned_cols=84  Identities=17%  Similarity=0.181  Sum_probs=34.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH--HHHHHHHHHhhhcCCHHH
Q 047067          274 HGLGKATVRWFEKMLRNGIAPN--QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE--AHYVTFVDLLGRAGLLDR  349 (566)
Q Consensus       274 ~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~  349 (566)
                      .++...+...++.+......-.  ......+...+...|++++|...|+........|+.  .....|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            4555555555555555321100  112222233444455555555555444433322211  122223444444555555


Q ss_pred             HHHHHHhC
Q 047067          350 ALKFIREM  357 (566)
Q Consensus       350 A~~~~~~~  357 (566)
                      |+..++..
T Consensus       104 Al~~L~~~  111 (145)
T PF09976_consen  104 ALATLQQI  111 (145)
T ss_pred             HHHHHHhc
Confidence            55555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.80  E-value=0.00034  Score=68.95  Aligned_cols=84  Identities=14%  Similarity=0.078  Sum_probs=40.4

Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067          342 GRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA  419 (566)
Q Consensus       342 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  419 (566)
                      ...|++++|.+.|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~   92 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA   92 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            3444444554444444 2223 2334444444445555555555555555555555555555555555555555555555


Q ss_pred             HHHHHh
Q 047067          420 RKMMKE  425 (566)
Q Consensus       420 ~~~m~~  425 (566)
                      +++..+
T Consensus        93 ~~~al~   98 (356)
T PLN03088         93 LEKGAS   98 (356)
T ss_pred             HHHHHH
Confidence            554443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.80  E-value=0.038  Score=53.17  Aligned_cols=122  Identities=15%  Similarity=0.164  Sum_probs=89.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067          234 NTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD  313 (566)
Q Consensus       234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  313 (566)
                      +..+.-+...|+...|.++-.+..-|+-.-|-..+.+|+..++|++-..+...      +-.++-|..++.+|...|...
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~  254 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK  254 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence            34455567788999999999888888999999999999999999877765432      123477888889999999999


Q ss_pred             HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047067          314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACR  374 (566)
Q Consensus       314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~  374 (566)
                      +|..+..++     +     +..-+.+|.++|++.+|.+.--+.   .|...+..+..-+.
T Consensus       255 eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~  302 (319)
T PF04840_consen  255 EASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP  302 (319)
T ss_pred             HHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence            998887552     1     245678889999999988776554   25555544444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.78  E-value=0.051  Score=54.09  Aligned_cols=394  Identities=14%  Similarity=0.143  Sum_probs=230.8

Q ss_pred             CCChhHHHHHHHHHHhcCChhHHHHHHccCCCC---CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHH
Q 047067           24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVK---DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVL  100 (566)
Q Consensus        24 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  100 (566)
                      +-|+.+|+.||.-+... .++++++.++++..+   ....|..-|..-.+..+++....+|.+.+..-+  +...|..-|
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl   93 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL   93 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence            66899999999988766 999999999998733   567899999999999999999999999876533  344454444


Q ss_pred             HHHccCC-Cch---HHHHHHHHHH-HHhCCCCc-hhHHHHHHHH---------HHhcCCHHHHHHHHHhCCCC---Ch--
Q 047067          101 KASGAGA-TDD---KFGRQVHAFC-LKYGYDWN-VYVGSSLLDM---------YARFDQMDDAWFLFTALESK---NE--  160 (566)
Q Consensus       101 ~a~~~~~-~~~---~~~~~i~~~~-~~~g~~~~-~~~~~~li~~---------y~~~g~~~~A~~~f~~~~~~---~~--  160 (566)
                      .-.-+.. ...   +...+.++.+ .+.|+++- -..|+..++.         |....+++..++++.++...   |.  
T Consensus        94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk  173 (656)
T KOG1914|consen   94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK  173 (656)
T ss_pred             HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence            4322221 111   1222333333 34455442 3345555554         34445677778888876531   11  


Q ss_pred             -----HHHHHHHHH-------HHhCCChhHHHHHHHHHHH--CCCCCCH-------------------------------
Q 047067          161 -----VSWNALIAG-------HARKSEGEKALRTFSEMLR--EGFEPTH-------------------------------  195 (566)
Q Consensus       161 -----~~~~~li~~-------~~~~g~~~~A~~~~~~m~~--~g~~pd~-------------------------------  195 (566)
                           ..|..=|..       --+...+..|.+++++...  .|+..+.                               
T Consensus       174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~  253 (656)
T KOG1914|consen  174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR  253 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence                 111110100       0112223333333333321  1111000                               


Q ss_pred             ------------HHHHHHH---------------------HHHhccCC-------hHHHHHHHHHHHHhCCCCcHhHHHH
Q 047067          196 ------------FSYSSVF---------------------TALASTGS-------LEQGKWVHAHVIKSGGQLVAFVGNT  235 (566)
Q Consensus       196 ------------~t~~~ll---------------------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~  235 (566)
                                  .+|...+                     +.+...|+       .+++..+++..+..-...+..+|.+
T Consensus       254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~  333 (656)
T KOG1914|consen  254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA  333 (656)
T ss_pred             cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        0111111                     11111222       2334444444443322333333333


Q ss_pred             HHHHHHhcC---CHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 047067          236 LVDMYAKSG---SIEDAEKVFNRLL----KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACS  307 (566)
Q Consensus       236 li~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~  307 (566)
                      +.+---..-   ..+.....++++.    ..-..+|-..+..-.+..-...|..+|.+..+.+..+ +.....+++.-++
T Consensus       334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c  413 (656)
T KOG1914|consen  334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC  413 (656)
T ss_pred             HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence            332111111   1333333444432    1233467777777777778999999999999988877 6667777777665


Q ss_pred             ccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHH
Q 047067          308 HAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPT--AAVWGALLGACRMHKNVEL  381 (566)
Q Consensus       308 ~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~  381 (566)
                       .++.+-|..+| .-+.+.|-  +..--...++-+...|+-..|..+|++.   .+.||  ..+|..+|.--..-|+...
T Consensus       414 -skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s  490 (656)
T KOG1914|consen  414 -SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS  490 (656)
T ss_pred             -cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence             58899999999 44555443  3344467788889999999999999988   23444  4799999999999999999


Q ss_pred             HHHHHHHHHhcCCCCC----chHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          382 GAYAAERIFELDPHDS----GPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       382 a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      +.++-++....-|.+.    ..-..+.+.|.-.+.+..-..-++.|
T Consensus       491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l  536 (656)
T KOG1914|consen  491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL  536 (656)
T ss_pred             HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence            9999998887555221    13345666677666665544444444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.72  E-value=0.0025  Score=53.94  Aligned_cols=122  Identities=8%  Similarity=0.100  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH--hHHHHHH
Q 047067          163 WNALIAGHARKSEGEKALRTFSEMLREGFEPT---HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA--FVGNTLV  237 (566)
Q Consensus       163 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li  237 (566)
                      |..++..+ ..++...+...++.+.... +.+   ......+...+...|++++|...++.+......+..  ...-.|.
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            33344443 3566666666666665542 111   112222334555566666666666666665422221  1223345


Q ss_pred             HHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 047067          238 DMYAKSGSIEDAEKVFNRLLKR--DVVSWNSMLTGCAQHGLGKATVRWFEK  286 (566)
Q Consensus       238 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~  286 (566)
                      ..+...|++++|+..++....+  ....+......|.+.|+.++|...|++
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5566666666666666554332  233444555566666666666666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.70  E-value=0.00088  Score=54.42  Aligned_cols=101  Identities=12%  Similarity=-0.011  Sum_probs=62.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhHHhhCCC--ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 047067          299 FLCVLTACSHAGLLDEGQGYFALMKKHGVE--PEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLG  371 (566)
Q Consensus       299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~  371 (566)
                      +..+...+...|++++|...|..+......  .....+..+...+.+.|++++|.+.++++ ...|+    ..++..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            344444555556666666666443332211  11234455667777777777777777765 22232    356677777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          372 ACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       372 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      ++...|+.+.|...++++++..|+++.+
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            7888888888888888888888887644

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.67  E-value=0.00013  Score=52.04  Aligned_cols=58  Identities=22%  Similarity=0.228  Sum_probs=45.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          369 LLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +...+...|++++|+..++++++..|+++.++..++.++...|++++|...++++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455677888888888888888888888888888888888888888888888887653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.62  E-value=0.0031  Score=65.08  Aligned_cols=140  Identities=14%  Similarity=0.109  Sum_probs=71.8

Q ss_pred             CCCChhHHHHHHHHHHHc--C---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067          257 LKRDVVSWNSMLTGCAQH--G---LGKATVRWFEKMLRNGIAPNQ-VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE  330 (566)
Q Consensus       257 ~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~  330 (566)
                      ...|..+|...+.+....  +   ....|+.+|++.++  ..|+. ..+..+..++...               .+..|.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~---------------~~~~~~  395 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR---------------HSQQPL  395 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH---------------HhcCCc
Confidence            345778888888775432  2   36688888888888  46663 3333332222111               011110


Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM---P-IEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI  406 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  406 (566)
                      .            ..++..+.+..++.   + ...+...+.++.-.....|++++|...++++++++|+ ...|..++.+
T Consensus       396 ~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~  462 (517)
T PRK10153        396 D------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKV  462 (517)
T ss_pred             c------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence            0            01112222222221   1 1123344555544444556666666666666666663 4566666666


Q ss_pred             HHhcCChhHHHHHHHHHHhC
Q 047067          407 YASAGRLNDAARARKMMKES  426 (566)
Q Consensus       407 ~~~~g~~~~a~~~~~~m~~~  426 (566)
                      |...|+.++|...+++....
T Consensus       463 ~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        463 YELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             HHHcCCHHHHHHHHHHHHhc
Confidence            66666666666666665543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.62  E-value=0.00061  Score=62.40  Aligned_cols=108  Identities=16%  Similarity=0.102  Sum_probs=75.6

Q ss_pred             HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 047067          306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGA  383 (566)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~  383 (566)
                      ..+.+++++|+..|...+... +-|..-|..-..+|.+.|.++.|.+=.+.. .+.|.. .+|..|..+|...|++++|+
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            345677777777776555432 224445555567788888888887776665 666754 58888999999999999999


Q ss_pred             HHHHHHHhcCCCCCchHHHHHHHHHhcCChh
Q 047067          384 YAAERIFELDPHDSGPHILLANIYASAGRLN  414 (566)
Q Consensus       384 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  414 (566)
                      +.|+++++++|++......|-.+--+.+...
T Consensus       170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  170 EAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999998855555554444444433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.0002  Score=65.53  Aligned_cols=87  Identities=22%  Similarity=0.202  Sum_probs=78.7

Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067          339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA  416 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  416 (566)
                      .-+.+.+++++|+..|.+. .+.| |.+-|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            3456789999999999987 6777 6677788888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 047067          417 ARARKMMKE  425 (566)
Q Consensus       417 ~~~~~~m~~  425 (566)
                      .+.|++..+
T Consensus       169 ~~aykKaLe  177 (304)
T KOG0553|consen  169 IEAYKKALE  177 (304)
T ss_pred             HHHHHhhhc
Confidence            999998876

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0021  Score=61.35  Aligned_cols=266  Identities=11%  Similarity=-0.012  Sum_probs=156.7

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCh
Q 047067          136 LDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTH-FSYSSVFTALASTGSL  211 (566)
Q Consensus       136 i~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~  211 (566)
                      .+.+.+..++.+|+..+....+   .++.-|..-...+..-|++++|+--.+.-.+  ++|.. .+..-.-+++...++.
T Consensus        56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~  133 (486)
T KOG0550|consen   56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDL  133 (486)
T ss_pred             cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHH
Confidence            3455566666666666655433   2444555556666666666666555544433  22221 2333333334444444


Q ss_pred             HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHH-HHHHHHcCCHHHHHHHHH
Q 047067          212 EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----RDVVSWNSM-LTGCAQHGLGKATVRWFE  285 (566)
Q Consensus       212 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~  285 (566)
                      .+|.+.++.         ...+           ....|...++.+..     |...+|-.+ ..++...|++++|...--
T Consensus       134 i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~  193 (486)
T KOG0550|consen  134 IEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI  193 (486)
T ss_pred             HHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence            444433330         0000           11122222222211     222334333 234666788888887766


Q ss_pred             HHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHhHHhhCCCccHHHH-------------HHHHHHhhhcCCHHHH
Q 047067          286 KMLRNGIAPNQVTFLCVLT--ACSHAGLLDEGQGYFALMKKHGVEPEEAHY-------------VTFVDLLGRAGLLDRA  350 (566)
Q Consensus       286 ~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-------------~~li~~~~~~g~~~~A  350 (566)
                      ..++..  ++ ..+..+++  ++-..++.+.+...|......  .|+...-             ..=.....+.|++.+|
T Consensus       194 ~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A  268 (486)
T KOG0550|consen  194 DILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA  268 (486)
T ss_pred             HHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence            665532  11 12222222  334466777888777655443  3442221             1122345788999999


Q ss_pred             HHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067          351 LKFIREM-PIEP-----TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       351 ~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      .+.+.+. .+.|     +...|.....+..+.|+.++|+.-.+++++++|.-..+|..-++++...++|++|.+-+++..
T Consensus       269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~  348 (486)
T KOG0550|consen  269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM  348 (486)
T ss_pred             HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887 5555     445666666778899999999999999999999999999999999999999999999999987


Q ss_pred             hCCC
Q 047067          425 ESGV  428 (566)
Q Consensus       425 ~~g~  428 (566)
                      +...
T Consensus       349 q~~~  352 (486)
T KOG0550|consen  349 QLEK  352 (486)
T ss_pred             hhcc
Confidence            6443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.58  E-value=0.00083  Score=58.87  Aligned_cols=81  Identities=16%  Similarity=0.076  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067          332 AHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI  406 (566)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  406 (566)
                      ..+..+...|.+.|++++|...|++. ...|+    ...|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34556666677777777777777766 22222    35777778888888999999999999998888888888888888


Q ss_pred             HHhcCC
Q 047067          407 YASAGR  412 (566)
Q Consensus       407 ~~~~g~  412 (566)
                      |...|+
T Consensus       116 ~~~~g~  121 (172)
T PRK02603        116 YHKRGE  121 (172)
T ss_pred             HHHcCC
Confidence            887776

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.58  E-value=0.0014  Score=64.75  Aligned_cols=105  Identities=13%  Similarity=0.057  Sum_probs=69.2

Q ss_pred             HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047067          305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELG  382 (566)
Q Consensus       305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a  382 (566)
                      .+...|++++|...|....... +.+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|++++|
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence            3344566666666664444432 223455666666777777777777777766 4455 455777777778888888888


Q ss_pred             HHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067          383 AYAAERIFELDPHDSGPHILLANIYASA  410 (566)
Q Consensus       383 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~  410 (566)
                      +..++++++++|+++.....+..+..+.
T Consensus        90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         90 KAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8888888888888877666665554433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.56  E-value=0.0024  Score=55.95  Aligned_cols=131  Identities=13%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHH
Q 047067          260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN--QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTF  337 (566)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  337 (566)
                      ....+..+...+...|++++|+..|++..+....|.  ...+..+...+.+.|++++|...+....... +.+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            445677777888888888888888888877533332  3567777778888888888888885555432 2234455566


Q ss_pred             HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067          338 VDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       338 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  412 (566)
                      ...|...|+...+..-++..                  ...++.|.+.++++++.+|++   +..++..+...|+
T Consensus       113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            66676766665554333221                  012677888899999988886   4555555555443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.55  E-value=0.00098  Score=58.17  Aligned_cols=95  Identities=14%  Similarity=-0.072  Sum_probs=76.8

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      ....|..+...+...|++++|...|++. .+.|+    ..+|..+...+...|+.++|+..+++++++.|.....+..++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            3456677777888889999999998877 33332    357888889999999999999999999999999988888888


Q ss_pred             HHHH-------hcCChhHHHHHHHHHH
Q 047067          405 NIYA-------SAGRLNDAARARKMMK  424 (566)
Q Consensus       405 ~~~~-------~~g~~~~a~~~~~~m~  424 (566)
                      .+|.       ..|++++|...+++..
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            8888       7888887776666553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.012  Score=52.65  Aligned_cols=162  Identities=13%  Similarity=0.164  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL-TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL  341 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  341 (566)
                      .|..++-+....|+.+.|...++++... + |...-...+= .-+.-.|++++|.++++...... +.|..+|-.-+-+.
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil  130 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL  130 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence            3445666677789999999999998886 3 5543322222 12345789999999996655544 55667777667777


Q ss_pred             hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---ChhHH
Q 047067          342 GRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG---RLNDA  416 (566)
Q Consensus       342 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a  416 (566)
                      -..|+--+|.+-+.+.  .+..|...|.-+...|...|+++.|.-.+++++=+.|.++..+..+++.+.-.|   +.+-+
T Consensus       131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a  210 (289)
T KOG3060|consen  131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA  210 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7778877888777665  455699999999999999999999999999999999999999999999887665   45568


Q ss_pred             HHHHHHHHhCC
Q 047067          417 ARARKMMKESG  427 (566)
Q Consensus       417 ~~~~~~m~~~g  427 (566)
                      ++++.+..+..
T Consensus       211 rkyy~~alkl~  221 (289)
T KOG3060|consen  211 RKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHHhC
Confidence            88888887744

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.001  Score=61.37  Aligned_cols=102  Identities=17%  Similarity=0.086  Sum_probs=85.8

Q ss_pred             CccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047067          328 EPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM---HKNVELGAYAAERIFELDPHDSGPHIL  402 (566)
Q Consensus       328 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~  402 (566)
                      +-|...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++..   .....++..+++++++++|.|..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            557889999999999999999999999887 4444 45566666666432   335678999999999999999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067          403 LANIYASAGRLNDAARARKMMKESGVK  429 (566)
Q Consensus       403 l~~~~~~~g~~~~a~~~~~~m~~~g~~  429 (566)
                      |+..+...|++.+|...|+.|.+....
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999986543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.52  E-value=0.045  Score=55.48  Aligned_cols=182  Identities=15%  Similarity=0.139  Sum_probs=107.4

Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH
Q 047067          118 AFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS  197 (566)
Q Consensus       118 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t  197 (566)
                      +.+.+.|-.|+...   +.+.++-.|.+.+|.++|.+                  +|....|+++|..|.--        
T Consensus       624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF--------  674 (1081)
T KOG1538|consen  624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF--------  674 (1081)
T ss_pred             HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH--------
Confidence            34555666566543   44556777888898888755                  56667777777766431        


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH
Q 047067          198 YSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLG  277 (566)
Q Consensus       198 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~  277 (566)
                        -...-+...|..++-+.+.+.-.+-.  -+..--.+...++...|+.++|..+.                  ..+|-.
T Consensus       675 --D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~  732 (1081)
T KOG1538|consen  675 --DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWV  732 (1081)
T ss_pred             --HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHH
Confidence              11223344455554444433322110  01111134456667778888777663                  334555


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          278 KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      +-++++-+++-.    .+..+...+...+-+...+..|.++|..+-+         ...++++-...++|++|..+-++.
T Consensus       733 d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h  799 (1081)
T KOG1538|consen  733 DMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH  799 (1081)
T ss_pred             HHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence            555555555433    2444555555556667777888888865543         235788888999999999999888


Q ss_pred             C-CCCCH
Q 047067          358 P-IEPTA  363 (566)
Q Consensus       358 ~-~~p~~  363 (566)
                      | +.||+
T Consensus       800 Pe~~~dV  806 (1081)
T KOG1538|consen  800 PEFKDDV  806 (1081)
T ss_pred             ccccccc
Confidence            4 44554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.51  E-value=0.085  Score=55.72  Aligned_cols=211  Identities=13%  Similarity=0.115  Sum_probs=131.6

Q ss_pred             cCCHHHHHHHHHhCCCC--ChHHHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047067          142 FDQMDDAWFLFTALESK--NEVSWNALIAG--HARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV  217 (566)
Q Consensus       142 ~g~~~~A~~~f~~~~~~--~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~  217 (566)
                      .+++..|....+++..+  |. .|...+.+  ..+.|+.++|..+++.....+.. |..|...+-..|...++.+++..+
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence            35566666666665442  22 23333333  46788888888888777665533 778888888888888888888888


Q ss_pred             HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHHhcCCCChhHHHHHHHHHHH-cCC---------HHHHHHH
Q 047067          218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIED----AEKVFNRLLKRDVVSWNSMLTGCAQ-HGL---------GKATVRW  283 (566)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~-~g~---------~~~A~~~  283 (566)
                      |+.+.+..  |+......+..+|.+.+.+.+    |.+++...+++--..|+.+ +.+.+ ...         ..-|...
T Consensus       100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen  100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHH
Confidence            88887764  446666777777877776543    5667776666655566543 33222 111         1234556


Q ss_pred             HHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          284 FEKMLRNG-IAPNQVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       284 ~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      ++.+.+.+ -.-+..-...-+......|.+++|..++ ....+.-.+-+...-+--++.+...+++.+-.++-.+.
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L  252 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL  252 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            66666544 1112222333344556788999999999 44333333334444456678888999998877776655

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.48  E-value=0.00034  Score=49.88  Aligned_cols=61  Identities=21%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067          337 FVDLLGRAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      +...+.+.|++++|...|++. ...|+ ...|..+..++...|++++|...++++++..|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456788999999999999998 55674 56888899999999999999999999999999874

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.48  E-value=0.0051  Score=58.48  Aligned_cols=134  Identities=12%  Similarity=0.149  Sum_probs=95.9

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA-CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL  340 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  340 (566)
                      .+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            467778888888888888888888887543 2233344433333 23356777799999554443 45677788899999


Q ss_pred             hhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067          341 LGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       341 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      +.+.|+.+.|..+|++. ..-|.    ...|...+.--...|+.+....+.+++.+.-|++.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999987 22233    35999999999999999999999999999888754

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.47  E-value=0.00044  Score=50.64  Aligned_cols=58  Identities=22%  Similarity=0.192  Sum_probs=51.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          370 LGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       370 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      -..+...++++.|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            3567888999999999999999999999999999999999999999999999988754

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.40  E-value=0.013  Score=55.94  Aligned_cols=110  Identities=15%  Similarity=0.221  Sum_probs=53.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHc
Q 047067          236 LVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH-GLGKATVRWFEKMLRN----GIAPN--QVTFLCVLTACSH  308 (566)
Q Consensus       236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~  308 (566)
                      .++.|.+.|++..|-+++..           +...|... |++++|++.|++..+.    | .|.  ...+..+...+.+
T Consensus       100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence            34456666666665555433           44455555 6677777766665442    1 111  2334455556666


Q ss_pred             cCCHHHHHHHHHhHHhhCCC-----ccHH-HHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          309 AGLLDEGQGYFALMKKHGVE-----PEEA-HYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       309 ~g~~~~a~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      .|++++|.++|+........     ++.. .+-..+-.+...|++..|.+.+++.
T Consensus       168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~  222 (282)
T PF14938_consen  168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY  222 (282)
T ss_dssp             TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666666444332211     1121 2222333444556666666666654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.39  E-value=0.00024  Score=51.23  Aligned_cols=53  Identities=15%  Similarity=0.286  Sum_probs=44.7

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ...|++++|+..++++++.+|+++.+...++.+|.+.|++++|.++++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45788899999999999999998888889999999999999999888887654

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.39  E-value=0.0024  Score=48.83  Aligned_cols=57  Identities=14%  Similarity=0.126  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067          264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL  321 (566)
Q Consensus       264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  321 (566)
                      |..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   59 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEK   59 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666666666666666665531 11223444444444445555555555533

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.37  E-value=0.19  Score=50.23  Aligned_cols=367  Identities=11%  Similarity=0.088  Sum_probs=182.7

Q ss_pred             CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-hhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHH
Q 047067           55 VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPN-QFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGS  133 (566)
Q Consensus        55 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~  133 (566)
                      +-|+.+|+.||+-+-.. .++++.+.+++|..  +.|+ ...|..-++.-....+++ ..+.+|+..+..-+.  ...|.
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe-~VEkLF~RCLvkvLn--lDLW~   90 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFE-SVEKLFSRCLVKVLN--LDLWK   90 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhh--HhHHH
Confidence            34889999999977555 89999999999986  3454 557788888888889999 999999998876443  45555


Q ss_pred             HHHHHHHh-cCCHHHH----HHHHHhCC------CCChHHHHHHHHH---------HHhCCChhHHHHHHHHHHHCCCC-
Q 047067          134 SLLDMYAR-FDQMDDA----WFLFTALE------SKNEVSWNALIAG---------HARKSEGEKALRTFSEMLREGFE-  192 (566)
Q Consensus       134 ~li~~y~~-~g~~~~A----~~~f~~~~------~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~-  192 (566)
                      ..++--.+ .|+...+    .+.|+-..      -..-..|+..+.-         |..+.+.+...++|+++...-+. 
T Consensus        91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n  170 (656)
T KOG1914|consen   91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN  170 (656)
T ss_pred             HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence            55543222 2333222    22222221      1233346655543         34445666677788887653211 


Q ss_pred             -----CCHHHHHHHHHHHh-------ccCChHHHHHHHHHHHH--hCCCCcHhH---------------HHHHHHHHHhc
Q 047067          193 -----PTHFSYSSVFTALA-------STGSLEQGKWVHAHVIK--SGGQLVAFV---------------GNTLVDMYAKS  243 (566)
Q Consensus       193 -----pd~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~li~~~~~~  243 (566)
                           -|-.+|..-++...       +...+-.|+++++++..  .|+.....+               |-.+|+-=-..
T Consensus       171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN  250 (656)
T KOG1914|consen  171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN  250 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence                 02223322222211       22334556666666543  232111111               11111100000


Q ss_pred             ------CCHHHH--HHHHHhcC---CCChhHHHHH-------HHHHHHcCC-------HHHHHHHHHHHHHcCCCCCHHH
Q 047067          244 ------GSIEDA--EKVFNRLL---KRDVVSWNSM-------LTGCAQHGL-------GKATVRWFEKMLRNGIAPNQVT  298 (566)
Q Consensus       244 ------g~~~~A--~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t  298 (566)
                            |.+-.-  .=++++..   .-.+..|---       -..+...|+       -+++..+++.....-..-+..+
T Consensus       251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L  330 (656)
T KOG1914|consen  251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL  330 (656)
T ss_pred             CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                  000000  00000000   0001111100       001122222       3344444444443222222233


Q ss_pred             HHHHHHHHHcc---CCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCC-CHHHHHHHH
Q 047067          299 FLCVLTACSHA---GLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEP-TAAVWGALL  370 (566)
Q Consensus       299 ~~~ll~a~~~~---g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~ll  370 (566)
                      |..+...--..   ...+....++ +......++|+. +|..++..-.|..-+..|..+|.+.   +..+ ++.+.++++
T Consensus       331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m  409 (656)
T KOG1914|consen  331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM  409 (656)
T ss_pred             HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence            32222211101   1133333444 222223334432 4566666666777777777777776   2333 455666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067          371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK  429 (566)
Q Consensus       371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~  429 (566)
                      .-++ .++.+.|.++|+--+...++++..-...++.+...++-..++.+|++....++.
T Consensus       410 Ey~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~  467 (656)
T KOG1914|consen  410 EYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS  467 (656)
T ss_pred             HHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence            5544 356677777777777777777655556666677777777777777777766544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.34  E-value=0.0024  Score=53.65  Aligned_cols=89  Identities=17%  Similarity=0.165  Sum_probs=77.4

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChh
Q 047067          337 FVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLN  414 (566)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  414 (566)
                      ..--+-..|++++|..+|+-+ -..| +..-|..|..++...++++.|+..|..+.-++++||.++...+.+|...|+.+
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence            334456789999999999877 2233 56678889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 047067          415 DAARARKMMKE  425 (566)
Q Consensus       415 ~a~~~~~~m~~  425 (566)
                      .|+..|+...+
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.28  E-value=0.083  Score=48.95  Aligned_cols=171  Identities=15%  Similarity=0.075  Sum_probs=84.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCC--C-hH---HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 047067          135 LLDMYARFDQMDDAWFLFTALESK--N-EV---SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS-  207 (566)
Q Consensus       135 li~~y~~~g~~~~A~~~f~~~~~~--~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~-  207 (566)
                      ....+.+.|++++|.+.|+.+...  + ..   +.-.++.+|.+.+++++|...|++..+.-..-...-+...+.+.+. 
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            344456678888888888877652  1 12   2234556777888888888888887765322222233333333221 


Q ss_pred             -c---------------CCh---HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH
Q 047067          208 -T---------------GSL---EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSML  268 (566)
Q Consensus       208 -~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li  268 (566)
                       .               .+.   ..|...++.+++.               |-...-..+|...+..+...-...--.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~ia  182 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSVA  182 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0               011   1222333333332               22222223333322222111111111234


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          269 TGCAQHGLGKATVRWFEKMLRN--GIAPNQVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       269 ~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      .-|.+.|.+..|+.-|+.+++.  +.+........+..+|...|..++|..+..
T Consensus       183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4466677777777777777663  112223455556666666666666666553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.26  E-value=0.0009  Score=50.57  Aligned_cols=81  Identities=16%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHH
Q 047067          274 HGLGKATVRWFEKMLRNGIA-PNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALK  352 (566)
Q Consensus       274 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  352 (566)
                      .|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. ...+.. +......+..+|.+.|++++|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence            46777777777777774321 2344445567777777777777777754 222211 22333344667777777777777


Q ss_pred             HHHh
Q 047067          353 FIRE  356 (566)
Q Consensus       353 ~~~~  356 (566)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.25  E-value=0.05  Score=46.45  Aligned_cols=131  Identities=15%  Similarity=0.094  Sum_probs=98.9

Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-C-----CCCCHHH
Q 047067          292 IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-P-----IEPTAAV  365 (566)
Q Consensus       292 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-----~~p~~~~  365 (566)
                      ..|+...-..|..+....|+..+|...|+....--+..|....-.+.++....+++.+|...++++ .     -.||.  
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--  162 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--  162 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence            457777777788888889999999998876665556667777778888888889999998888877 1     23343  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          366 WGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       366 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .-.+...+...|....|+..|+.++..-|+- ..-......+.++|+.+++..-+..+.+
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            3445677888899999999999999887764 3555667788899988888766655544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.24  E-value=0.00022  Score=42.94  Aligned_cols=32  Identities=28%  Similarity=0.491  Sum_probs=30.4

Q ss_pred             HHHHHhcCCCCCchHHHHHHHHHhcCChhHHH
Q 047067          386 AERIFELDPHDSGPHILLANIYASAGRLNDAA  417 (566)
Q Consensus       386 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~  417 (566)
                      ++++++++|+++.+|..|+.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            68899999999999999999999999999986

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.20  E-value=0.056  Score=51.60  Aligned_cols=124  Identities=10%  Similarity=0.118  Sum_probs=73.0

Q ss_pred             HHHHHHHhc-CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH-H
Q 047067          235 TLVDMYAKS-GSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-----PNQV-T  298 (566)
Q Consensus       235 ~li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t  298 (566)
                      .+...|-.. |++++|.+.|++..+     ..    ...+..+...+.+.|++++|+++|++....-..     ++.. .
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            344555555 667777766665521     11    234556777888999999999999988764322     2222 3


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhHHhh--CCCcc--HHHHHHHHHHhhh--cCCHHHHHHHHHhCC
Q 047067          299 FLCVLTACSHAGLLDEGQGYFALMKKH--GVEPE--EAHYVTFVDLLGR--AGLLDRALKFIREMP  358 (566)
Q Consensus       299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~  358 (566)
                      |...+-++...|++..|...++.....  ++..+  ......|+.++-.  ...+++|..-|+.+.
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence            334444666788999999988554422  33323  3455566666653  456777777777773

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.18  E-value=0.00077  Score=48.69  Aligned_cols=65  Identities=17%  Similarity=0.252  Sum_probs=53.2

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHK-NVELGAYAAERIFELDP  394 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p  394 (566)
                      +...|..+...+...|++++|...|++. .+.| +...|..+..++...| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3556777888888888999998888877 4456 4568888888899998 79999999999999887

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.18  E-value=0.25  Score=47.67  Aligned_cols=111  Identities=13%  Similarity=0.129  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047067          297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMH  376 (566)
Q Consensus       297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~  376 (566)
                      .+.+..+.-|...|....|.++-..   .. .|+..-|...+.+|+..++|++-.++...   +..++-|..++.+|...
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~---Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKE---FK-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHH---cC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence            3555566677778888888877543   34 47888899999999999999998887654   34567888999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          377 KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      |+..+|.....+         ..+..-..+|.++|+|.+|.+.--+.
T Consensus       251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence            999999888777         12355678899999999998764443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.17  E-value=0.005  Score=54.10  Aligned_cols=97  Identities=16%  Similarity=0.262  Sum_probs=71.2

Q ss_pred             HHHHHhc--CCCChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC------------
Q 047067          250 EKVFNRL--LKRDVVSWNSMLTGCAQ-----HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG------------  310 (566)
Q Consensus       250 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g------------  310 (566)
                      ...|+..  ..+|-.+|..++..|.+     .|..+=....++.|.+-|+.-|..+|+.||..+=+..            
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3445554  45677777777777764     4677777788888999999889999999988765421            


Q ss_pred             ----CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC
Q 047067          311 ----LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL  346 (566)
Q Consensus       311 ----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  346 (566)
                          +-+-|+++++.|...|+.||.+++..+++.+++.+.
T Consensus       114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                235677778888888888888888888888777654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.16  E-value=0.0058  Score=60.57  Aligned_cols=55  Identities=15%  Similarity=0.314  Sum_probs=29.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067          265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF  319 (566)
Q Consensus       265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  319 (566)
                      .+++..|...|..++++.+++.=...|+-||..||+.|+..+.+.|++..|.++.
T Consensus       107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~  161 (429)
T PF10037_consen  107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVA  161 (429)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHH
Confidence            3445555555555555555555555555555555555555555555555555555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.14  E-value=0.0089  Score=46.48  Aligned_cols=81  Identities=14%  Similarity=0.073  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCcHhH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGF-EPTHFSYSSVFTALASTG--------SLEQGKWVHAHVIKSGGQLVAFV  232 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~  232 (566)
                      +-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+-....+|+.|+..++.|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            345566677777999999999999999999 999999999999887653        23446677888888888888888


Q ss_pred             HHHHHHHHHh
Q 047067          233 GNTLVDMYAK  242 (566)
Q Consensus       233 ~~~li~~~~~  242 (566)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            8888877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.13  E-value=0.00048  Score=49.62  Aligned_cols=55  Identities=16%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067          343 RAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       343 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      +.|++++|.++|+++ ...| +...+..+..++...|++++|..+++++...+|+++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            345555555555554 2223 344445555555555555555555555555555544

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.13  E-value=0.0041  Score=59.32  Aligned_cols=127  Identities=13%  Similarity=0.070  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHhH----HhhCCC-ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCHH
Q 047067          298 TFLCVLTACSHAGLLDEGQGYFALM----KKHGVE-PEEAHYVTFVDLLGRAGLLDRALKFIREM-------P-IEPTAA  364 (566)
Q Consensus       298 t~~~ll~a~~~~g~~~~a~~~~~~~----~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~  364 (566)
                      .|..|.+.|.-.|+++.|+..++.-    .+.|-. .....+..+...+.-.|+++.|.+.|+..       + -.-...
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            4555666666678899988877321    223321 12345677788888889999988888754       2 112345


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067          365 VWGALLGACRMHKNVELGAYAAERIFEL----D--PHDSGPHILLANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      +.-+|.+.|....+++.|+..+.+=+.+    +  .....++.+|+++|...|..+.|....+.-.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            6677888888888888998888776543    2  2234578889999999999999887766654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.11  E-value=0.02  Score=47.97  Aligned_cols=93  Identities=8%  Similarity=-0.080  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067          160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD  238 (566)
Q Consensus       160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  238 (566)
                      ....-.+..-+.+.|++++|..+|+.....  .|. ..-|-.+..++-..|++++|...|....... +.|+..+-.+..
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~  111 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            333344444455566666666666655543  222 2233334444445555555555555555544 234444444555


Q ss_pred             HHHhcCCHHHHHHHHHh
Q 047067          239 MYAKSGSIEDAEKVFNR  255 (566)
Q Consensus       239 ~~~~~g~~~~A~~~~~~  255 (566)
                      +|.+.|+.+.|++.|+.
T Consensus       112 c~L~lG~~~~A~~aF~~  128 (157)
T PRK15363        112 CYLACDNVCYAIKALKA  128 (157)
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            55555555555555543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.10  E-value=0.013  Score=50.97  Aligned_cols=81  Identities=11%  Similarity=0.116  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067          160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEP--THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV  237 (566)
Q Consensus       160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  237 (566)
                      ...|..+...+...|++++|+..|++.......|  ...++..+...+...|+.++|...+....+.. +.....+..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            3456666667777777777777777776542222  12355566666666666666666666666543 22233334444


Q ss_pred             HHHH
Q 047067          238 DMYA  241 (566)
Q Consensus       238 ~~~~  241 (566)
                      ..|.
T Consensus       114 ~i~~  117 (168)
T CHL00033        114 VICH  117 (168)
T ss_pred             HHHH
Confidence            4444

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.10  E-value=0.013  Score=45.64  Aligned_cols=79  Identities=15%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHhHHhhCCCccHHHHH
Q 047067          265 NSMLTGCAQHGLGKATVRWFEKMLRNGI-APNQVTFLCVLTACSHAG--------LLDEGQGYFALMKKHGVEPEEAHYV  335 (566)
Q Consensus       265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~  335 (566)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+-.+..        ++-+...+++.+...+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3455566667999999999999999999 899999999998877643        2345566777777778888888888


Q ss_pred             HHHHHhhh
Q 047067          336 TFVDLLGR  343 (566)
Q Consensus       336 ~li~~~~~  343 (566)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            88776654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.08  E-value=0.022  Score=54.13  Aligned_cols=126  Identities=13%  Similarity=0.104  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA-LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY  240 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  240 (566)
                      +|..++...-+.+..+.|-.+|.+..+.+ ..+...|...... +...++.+.|..+|+..++. ++.+...+...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            46666666666666666666666665332 2223333333333 22245555577777766665 355666667777777


Q ss_pred             HhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          241 AKSGSIEDAEKVFNRLLKR------DVVSWNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       241 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      .+.++.+.|+.+|++....      -...|...+.-=.+.|+.+.+..+.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777777777776432      224677777666667777777777777666

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.04  E-value=0.023  Score=45.86  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=60.7

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CcHhHHHHHHHHHH
Q 047067          166 LIAGHARKSEGEKALRTFSEMLREGFEPT--HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQ--LVAFVGNTLVDMYA  241 (566)
Q Consensus       166 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~  241 (566)
                      +..++-..|+.++|+.+|++....|+..+  ...+..+.+.+...|++++|..+++........  .+..+...+.-++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44566778888888888888888776544  234556666777777777777777777654311  01222222333455


Q ss_pred             hcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 047067          242 KSGSIEDAEKVFNRLLKRDVVSWNSMLT  269 (566)
Q Consensus       242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~  269 (566)
                      ..|+.++|.+.+-....++...|.--|.
T Consensus        87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~  114 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALAETLPRYRRAIR  114 (120)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666654443333333333333

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.02  E-value=0.0077  Score=59.70  Aligned_cols=116  Identities=11%  Similarity=0.094  Sum_probs=79.0

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047067          128 NVYVGSSLLDMYARFDQMDDAWFLFTALESK------NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSV  201 (566)
Q Consensus       128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l  201 (566)
                      +......+++......+++.+..++.+....      -..|..++|+.|.+.|..++++.+++.=...|+-||..|++.+
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            3444444555555555666666665554431      1234567888888888888888888887788888888888888


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 047067          202 FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKS  243 (566)
Q Consensus       202 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  243 (566)
                      ++.+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            888888888888888888877776655655555445444444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.00  E-value=0.0034  Score=61.63  Aligned_cols=63  Identities=17%  Similarity=-0.060  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG---PHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ...|+.+..+|...|++++|+..++++++++|++..   +|..++.+|...|+.++|...+++..+
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345555555555555555555555555555555542   255555555555555555555555544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.98  E-value=0.011  Score=47.71  Aligned_cols=88  Identities=15%  Similarity=0.060  Sum_probs=58.1

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 047067          337 FVDLLGRAGLLDRALKFIREM---PIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPH---DSGPHILLANIYA  408 (566)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~  408 (566)
                      +..++-..|+.++|..+|++.   +....  ...+-.+.+.+...|++++|+.++++.++..|+   +......++.++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            344556667777777777665   22221  235555667777888888888888888777676   5555566677777


Q ss_pred             hcCChhHHHHHHHHHH
Q 047067          409 SAGRLNDAARARKMMK  424 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~  424 (566)
                      ..|+.++|.+.+-...
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            8888888877765443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.97  E-value=0.052  Score=46.32  Aligned_cols=103  Identities=18%  Similarity=0.215  Sum_probs=90.6

Q ss_pred             CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchH
Q 047067          326 GVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPH--DSGPH  400 (566)
Q Consensus       326 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~  400 (566)
                      .+.|+...-..|...+...|+..||...|++.   .+.-|....-.+.++....+++..|...++++.+..|.  .+...
T Consensus        84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            45788888888999999999999999999988   45568888889999999999999999999999998875  56678


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          401 ILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       401 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      ..++..|...|++.+|+..|+...+.-.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence            8899999999999999999999987543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.13  Score=46.43  Aligned_cols=231  Identities=12%  Similarity=0.042  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC-hH-HHHHHHHHHHHhCCCCcHhHHHHH
Q 047067          160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL-ASTGS-LE-QGKWVHAHVIKSGGQLVAFVGNTL  236 (566)
Q Consensus       160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~l  236 (566)
                      ...|+.-+.++.+....++|..-+....+.+ .||.. |...=..+ .+.|. .. ..+.+|.++...-..|    +++|
T Consensus        69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnp----qesL  142 (366)
T KOG2796|consen   69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNP----QESL  142 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCc----HHHH
Confidence            3456666666777776666655444443221 12210 00000000 01121 11 1233444444321111    3556


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCC--CC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067          237 VDMYAKSGSIEDAEKVFNRLLK--RD--------VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC  306 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  306 (566)
                      ...|.-..-+++-...|+.-..  ..        ...-+.++..+.-+|.+.-.+.++++.++...+-+......|.+.-
T Consensus       143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~  222 (366)
T KOG2796|consen  143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS  222 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            6665555445555555443322  12        2334556666666777777788888888765555666777777777


Q ss_pred             HccCCHHHHHHHHHhHHhhCCCccHHHHHH-----HHHHhhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCH
Q 047067          307 SHAGLLDEGQGYFALMKKHGVEPEEAHYVT-----FVDLLGRAGLLDRALKFIREMPI-EP-TAAVWGALLGACRMHKNV  379 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~  379 (566)
                      .+.|+.+.|..+|+...+..-..+....+.     ....|.-++++.+|...+.+.+. +| |+...|+-.-+..-.|+.
T Consensus       223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence            788888888888865554332333222322     23344555666666666666521 22 334444444444455666


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 047067          380 ELGAYAAERIFELDPHD  396 (566)
Q Consensus       380 ~~a~~~~~~~~~~~p~~  396 (566)
                      ..|++..+.+++..|..
T Consensus       303 ~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  303 KDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHhccCCcc
Confidence            77777777776666654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.92  E-value=0.0076  Score=56.30  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA----AVWGALLGACRMHKNVELGAYAAERIFELDPHD---SGPHIL  402 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~  402 (566)
                      ...|...+..+.+.|++++|...|+.+ ...|+.    ..+--+..++...|+++.|...|+++++..|++   +.++..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            345666666666678888888888877 223432    355567777888899999999999998877765   445566


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhC
Q 047067          403 LANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       403 l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ++.+|...|++++|.++++...+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            788888889999999998888764

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.88  E-value=0.45  Score=45.68  Aligned_cols=270  Identities=16%  Similarity=0.150  Sum_probs=167.3

Q ss_pred             cCCHHHHHHHHHhCC---CCChHHHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCChH
Q 047067          142 FDQMDDAWFLFTALE---SKNEVSWNALIA--GHARKSEGEKALRTFSEMLREGFEPTHFSYS----SVFTALASTGSLE  212 (566)
Q Consensus       142 ~g~~~~A~~~f~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~----~ll~~~~~~~~~~  212 (566)
                      .|+-..|+++-.+..   ..|-...--++.  +-.-.|+++.|.+-|+.|..     |+.|-.    .+.-..-+.|+.+
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence            455666665554432   223333323332  23346888888888888865     223322    2223334677777


Q ss_pred             HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCChh--HHHHHHHHHHH---cCCHHHHHH
Q 047067          213 QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL-----LKRDVV--SWNSMLTGCAQ---HGLGKATVR  282 (566)
Q Consensus       213 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~--~~~~li~~~~~---~g~~~~A~~  282 (566)
                      .|.++-+..-..- +.-.....+.+...+..|+++.|+++.+.-     .++++.  .-..|+.+-+.   ..+...|..
T Consensus       172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~  250 (531)
T COG3898         172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD  250 (531)
T ss_pred             HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            7777776665543 233455677888888889999999888764     334432  22233333221   234556666


Q ss_pred             HHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----
Q 047067          283 WFEKMLRNGIAPNQVT-FLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----  357 (566)
Q Consensus       283 ~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----  357 (566)
                      .-.+..+  +.||-+- -..-..++.+.|++.++-.+++.+-+....|+  .+..  -.+.+.|+..  .+-+++.    
T Consensus       251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gdta--~dRlkRa~~L~  322 (531)
T COG3898         251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGDTA--LDRLKRAKKLE  322 (531)
T ss_pred             HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCCcH--HHHHHHHHHHH
Confidence            6555555  5677433 33445678899999999999977766544444  3322  2344555532  2222222    


Q ss_pred             CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 047067          358 PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA-GRLNDAARARKMMKES  426 (566)
Q Consensus       358 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~  426 (566)
                      .++|| ..+.-++..+....|++..|..-.+.+....|.. ..|..|.++-... |+-.+++..+.+..+.
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            33564 4566777788888999999999999999999986 4888888887554 9998888888777654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.84  E-value=0.004  Score=45.43  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=53.1

Q ss_pred             HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047067          338 VDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHI  401 (566)
Q Consensus       338 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  401 (566)
                      -..|.+.+++++|.++++++ ...| +...|.....++...|++++|.+.++++++..|+++....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            35678899999999999988 5556 4567888888899999999999999999999998865433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.35  Score=43.88  Aligned_cols=237  Identities=14%  Similarity=0.056  Sum_probs=144.6

Q ss_pred             cchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHH-ccCCCchH-HHHHHHHHHHHhCCCCchhHHHHH
Q 047067           58 MVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKAS-GAGATDDK-FGRQVHAFCLKYGYDWNVYVGSSL  135 (566)
Q Consensus        58 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~-~~~~i~~~~~~~g~~~~~~~~~~l  135 (566)
                      ...|+.-+..+++....++|..-++...... .||.+ |-..=..+ .+.|..-. ..+.+|..+.+.-    ..-+++|
T Consensus        69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l----gnpqesL  142 (366)
T KOG2796|consen   69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL----GNPQESL  142 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc----CCcHHHH
Confidence            3457777788888888888776655554432 22211 00000000 01222111 3455666655531    2336777


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCC--CChH--------HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067          136 LDMYARFDQMDDAWFLFTALES--KNEV--------SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL  205 (566)
Q Consensus       136 i~~y~~~g~~~~A~~~f~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~  205 (566)
                      ...|.-..-+++-...|+.-..  ..+.        .-+.++....-.|.+.-.+.++++..+...+-++.....+.+.-
T Consensus       143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~  222 (366)
T KOG2796|consen  143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS  222 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            7777766666666666655332  2222        33566667777788888888888888876666777777888888


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCH
Q 047067          206 ASTGSLEQGKWVHAHVIKSGGQLV-----AFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLG  277 (566)
Q Consensus       206 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~  277 (566)
                      .+.|+.+.|...++...+..-..+     ..+.......|.-..++..|...|.+++..   |++.-|.-.-+..-.|+.
T Consensus       223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence            888888888888887766433333     333333444566677788888888777543   555666655555667888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHH
Q 047067          278 KATVRWFEKMLRNGIAPNQVTFLCV  302 (566)
Q Consensus       278 ~~A~~~~~~m~~~g~~p~~~t~~~l  302 (566)
                      .+|++.++.|++.  .|...+-+++
T Consensus       303 ~DAiK~~e~~~~~--~P~~~l~es~  325 (366)
T KOG2796|consen  303 KDALKQLEAMVQQ--DPRHYLHESV  325 (366)
T ss_pred             HHHHHHHHHHhcc--CCccchhhhH
Confidence            8888888888873  5555444433

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.82  E-value=0.015  Score=51.21  Aligned_cols=97  Identities=11%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             HHHHHhC--CCCChHHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 047067          149 WFLFTAL--ESKNEVSWNALIAGHARK-----SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG------------  209 (566)
Q Consensus       149 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~------------  209 (566)
                      ...|+..  ..+|-.+|..++..|.+.     |..+=....++.|.+-|+.-|..+|+.||+.+-+..            
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3445554  345666777777766643     556666677778888888888888888887765421            


Q ss_pred             ----ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 047067          210 ----SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGS  245 (566)
Q Consensus       210 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  245 (566)
                          +-+-|..++++|...|+-||..++..|++.+++.+.
T Consensus       114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                334577777777777777777777777777765543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.81  E-value=0.09  Score=54.44  Aligned_cols=61  Identities=11%  Similarity=-0.061  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       295 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      +...|..+.-.....|++++|...++.....+  |+...|..+...+...|+.++|.+.+++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33455555444445566666666665555433  45566666666666667777766666654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.79  E-value=0.16  Score=47.14  Aligned_cols=185  Identities=10%  Similarity=0.051  Sum_probs=103.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCCC--C-hhH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047067          236 LVDMYAKSGSIEDAEKVFNRLLKR--D-VVS---WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA  309 (566)
Q Consensus       236 li~~~~~~g~~~~A~~~~~~~~~~--~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  309 (566)
                      ....+.+.|++++|.+.|+.+...  + ...   .-.++.+|.+.+++++|+..|++..+.-..-...-+...+.+.+..
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            344456678888888888877432  1 111   2345667788888888888888888743221223333333333310


Q ss_pred             CCHHHHHHHHHhH---HhhCCCcc-----HHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047067          310 GLLDEGQGYFALM---KKHGVEPE-----EAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVEL  381 (566)
Q Consensus       310 g~~~~a~~~~~~~---~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~  381 (566)
                      ..   ....+...   ....-.++     ...+..+++-|=...-..+|...+..+...--..- -.+..-|.+.|.+.-
T Consensus       118 ~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e-~~ia~~Y~~~~~y~A  193 (243)
T PRK10866        118 AL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE-LSVAEYYTKRGAYVA  193 (243)
T ss_pred             hc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHH
Confidence            00   00000000   00000000     12334445555445555555554444410000011 123345788899999


Q ss_pred             HHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067          382 GAYAAERIFELDPHDS---GPHILLANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       382 a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      |..-++.+++--|+.+   .+...+..+|.+.|..++|..+...+.
T Consensus       194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            9999999998777654   466788899999999999998877654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.74  E-value=0.0031  Score=40.65  Aligned_cols=42  Identities=31%  Similarity=0.349  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLAN  405 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  405 (566)
                      .+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            357788899999999999999999999999999988777653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.58  E-value=0.0074  Score=51.19  Aligned_cols=69  Identities=25%  Similarity=0.278  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCC
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE-----SGVKKEP  432 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~  432 (566)
                      .....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++++..     .|+.|++
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~  136 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP  136 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence            34556677788899999999999999999999999999999999999999999999998853     4765543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.43  E-value=0.0058  Score=45.27  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFEL----DPH---DSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .+++.+...+...|++++|+..+++++++    +++   -..++..++.+|...|++++|.+.+++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35666677777777777777777777653    222   234666788888888888888888777643

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.048  Score=52.57  Aligned_cols=64  Identities=14%  Similarity=0.082  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ..++..|..++.+.+++..|++...++++++|+|..+...-+.+|...|.++.|+..|+++.+.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            3566777888899999999999999999999999999999999999999999999999999873

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.30  E-value=1.7  Score=45.07  Aligned_cols=62  Identities=18%  Similarity=0.037  Sum_probs=34.9

Q ss_pred             CCChhHHHHHHHHHHhcCChhHHHHHHccCCC-CCcc------------hHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 047067           24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPV-KDMV------------TWTALISGYSQNDQPENAIILFSQMLRL   87 (566)
Q Consensus        24 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~------------~~~~li~~~~~~g~~~~A~~l~~~m~~~   87 (566)
                      .|.+..|..|.......-.++.|+..|-+... +.+.            .-.+=|.+|  -|++++|.++|-+|.++
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr  763 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR  763 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh
Confidence            46677777777666666677777777765531 1110            111122222  36777777777666544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.29  E-value=0.69  Score=45.19  Aligned_cols=159  Identities=18%  Similarity=0.111  Sum_probs=87.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047067          236 LVDMYAKSGSIEDAEKVFNRLLKR-------DVVSWNSMLTGCAQ---HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA  305 (566)
Q Consensus       236 li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  305 (566)
                      ++-.|....+++...++.+.+...       ....-....-++-+   .|+.++|++++..+....-.++..||..+...
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            444566777777777777766433       11111223334445   67777777777776555556677777766665


Q ss_pred             HHc---------cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHH----HHHHHH---HhC-----CCCC--C
Q 047067          306 CSH---------AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLD----RALKFI---REM-----PIEP--T  362 (566)
Q Consensus       306 ~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~~-----~~~p--~  362 (566)
                      |-.         ....++|...|...  ..+.|+..+--.++..+...|...    +..++-   ...     ...+  |
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kg--Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d  304 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKG--FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD  304 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHH--HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence            432         12355666666432  223344332222222233333211    122221   111     1122  3


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067          363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHD  396 (566)
Q Consensus       363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  396 (566)
                      -=.+.+++.++.-.|+.+.|.+.+++++.+.|+.
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            3345788889999999999999999999987764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.24  E-value=0.008  Score=44.52  Aligned_cols=61  Identities=15%  Similarity=0.166  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067          332 AHYVTFVDLLGRAGLLDRALKFIREM-------P-IEPT-AAVWGALLGACRMHKNVELGAYAAERIFEL  392 (566)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  392 (566)
                      .+|+.+...|...|++++|++.|++.       + -.|+ ..++..+..++...|++++|++.+++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35566666666667766666666554       1 1122 356777777888888888888888877653

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.21  E-value=0.046  Score=43.63  Aligned_cols=90  Identities=20%  Similarity=0.225  Sum_probs=74.8

Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhcCC
Q 047067          339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS----GPHILLANIYASAGR  412 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~  412 (566)
                      -+++..|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|+.-+++++++.-+..    .+|+.-+..|...|+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            3567889999999999877 4444 668899999999999999999999999999753322    257778888999999


Q ss_pred             hhHHHHHHHHHHhCCC
Q 047067          413 LNDAARARKMMKESGV  428 (566)
Q Consensus       413 ~~~a~~~~~~m~~~g~  428 (566)
                      -+.|+.-|+...+.|-
T Consensus       131 dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGS  146 (175)
T ss_pred             hHHHHHhHHHHHHhCC
Confidence            9999999999988764

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.21  E-value=1.4  Score=43.34  Aligned_cols=407  Identities=13%  Similarity=0.079  Sum_probs=202.2

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCChhHHHHHHccCCCCC-cchHHHHHHH--HHhCCCc
Q 047067            4 HLKKLKEARIVHAHILGSAFKND------IAMQNTILNAYAKCGCLDEARKLFDEMPVKD-MVTWTALISG--YSQNDQP   74 (566)
Q Consensus         4 ~~~~~~~a~~i~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~--~~~~g~~   74 (566)
                      +.+++.++..||.++.+.- ..+      ....+.++++|-- .+++.-...+....+.. ...|-.+-.+  +.+.+.+
T Consensus        18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~   95 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY   95 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence            3578899999999998763 333      3345677888763 34444444333332111 2345554443  3578889


Q ss_pred             cHHHHHHHHHHHC--CCCC------------ChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCC----CCchhHHHHHH
Q 047067           75 ENAIILFSQMLRL--GLKP------------NQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGY----DWNVYVGSSLL  136 (566)
Q Consensus        75 ~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~----~~~~~~~~~li  136 (566)
                      ++|++.|..-...  +-+|            |-.-=+.....+...|.+. +|+.++..++..=+    ..+..+|+.++
T Consensus        96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~-EgR~iLn~i~~~llkrE~~w~~d~yd~~v  174 (549)
T PF07079_consen   96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFS-EGRAILNRIIERLLKRECEWNSDMYDRAV  174 (549)
T ss_pred             HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence            9999988777654  3222            1112234455677888888 88888888776544    47888888888


Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChh-------------------------------HHHHHHHH
Q 047067          137 DMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGE-------------------------------KALRTFSE  185 (566)
Q Consensus       137 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~-------------------------------~A~~~~~~  185 (566)
                      -++++.=-++.-    +.+...=..-|.-||..|.+.=..-                               --++++..
T Consensus       175 lmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~  250 (549)
T PF07079_consen  175 LMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN  250 (549)
T ss_pred             HHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence            887764222111    1111111122344444443321110                               11111111


Q ss_pred             HHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCC----CcHhHHHHHHHHHHhcCCHHHHHHHHHhc--CC
Q 047067          186 MLREGFEPTHFS-YSSVFTALASTGSLEQGKWVHAHVIKSGGQ----LVAFVGNTLVDMYAKSGSIEDAEKVFNRL--LK  258 (566)
Q Consensus       186 m~~~g~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~  258 (566)
                      ....-+.|+... ...+...+.+  +.+++..+-+.+....+.    .-...+..++....+.++...|.+.+.-+  .+
T Consensus       251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld  328 (549)
T PF07079_consen  251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD  328 (549)
T ss_pred             HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence            112223333221 1122222222  444444444433332111    11223344444555555555555555443  22


Q ss_pred             CChhHH-------HHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH---HHHHccCC-HHHHHHHHHhH
Q 047067          259 RDVVSW-------NSMLTGCA----QHGLGKATVRWFEKMLRNGIAPNQVTF-LCVL---TACSHAGL-LDEGQGYFALM  322 (566)
Q Consensus       259 ~~~~~~-------~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll---~a~~~~g~-~~~a~~~~~~~  322 (566)
                      |+...-       ..+-...+    ..-+...-+.+|+......+  |..-. ..|+   .-+-+.|. -+.|..+++.+
T Consensus       329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i  406 (549)
T PF07079_consen  329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI  406 (549)
T ss_pred             CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            221100       01111111    11112223334444433222  21111 1111   12233344 56666666555


Q ss_pred             HhhCCCccHHHHHHHH----HHhhhc---CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHH
Q 047067          323 KKHGVEPEEAHYVTFV----DLLGRA---GLLD---RALKFIREMPIEP----TAAVWGALLGA--CRMHKNVELGAYAA  386 (566)
Q Consensus       323 ~~~~~~p~~~~~~~li----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~  386 (566)
                      .+.. +-|...-|...    ..|..+   ..+.   .-..++++.++.|    +...-|.|..|  ...+|++.++.-.-
T Consensus       407 l~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys  485 (549)
T PF07079_consen  407 LQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS  485 (549)
T ss_pred             HHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            4432 22333222221    122211   1111   2233445556665    33455666665  46789999998888


Q ss_pred             HHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          387 ERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       387 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      .-+.+..| ++.+|..++-+.....++++|..++..+
T Consensus       486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            88888999 7789999999999999999999999875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=2.1  Score=44.92  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=76.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067          234 NTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD  313 (566)
Q Consensus       234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  313 (566)
                      +--+.-+..-|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+.      .+.-|.-...+|.+.|+.+
T Consensus       688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~  761 (829)
T KOG2280|consen  688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD  761 (829)
T ss_pred             HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence            3344456667888888888888888888888888888888888877766655543      1345666778888888888


Q ss_pred             HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067          314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE  356 (566)
Q Consensus       314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (566)
                      +|.+++.+...         +.-.+.+|.+.|++.+|.++--+
T Consensus       762 EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  762 EAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence            88888755321         11467788888888888776543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.11  E-value=0.12  Score=48.47  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=54.4

Q ss_pred             ccCCHHHHHHHHHhHHhhCCCcc--HHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 047067          308 HAGLLDEGQGYFALMKKHGVEPE--EAHYVTFVDLLGRAGLLDRALKFIREM----PIEP-TAAVWGALLGACRMHKNVE  380 (566)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~  380 (566)
                      ..|++++|...|+...+.-....  ...+..+...|...|++++|...|+.+    |..| ....+-.+...+...|+.+
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence            34555555555533332211110  123445666677777777777777766    2222 2345555666777888999


Q ss_pred             HHHHHHHHHHhcCCCCC
Q 047067          381 LGAYAAERIFELDPHDS  397 (566)
Q Consensus       381 ~a~~~~~~~~~~~p~~~  397 (566)
                      .|...++++++..|++.
T Consensus       235 ~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHHHHCcCCH
Confidence            99999999998888865

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.10  E-value=1.6  Score=42.91  Aligned_cols=364  Identities=13%  Similarity=0.101  Sum_probs=207.0

Q ss_pred             CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCc---chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHH
Q 047067           24 KNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDM---VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVL  100 (566)
Q Consensus        24 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  100 (566)
                      +.|+..|-.||.-|...|.+++.++++++|..|-+   ..|..-|++=....+++....+|.+.+...+.  ...|..-|
T Consensus        39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl  116 (660)
T COG5107          39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL  116 (660)
T ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence            66888999999999999999999999999997754   46988888877788999999999998876544  44455444


Q ss_pred             HHHccCCCch-----HHHHHHHHHHHH-hCCCCc-hhHHHHHHHHHH---------hcCCHHHHHHHHHhCCC-C--Ch-
Q 047067          101 KASGAGATDD-----KFGRQVHAFCLK-YGYDWN-VYVGSSLLDMYA---------RFDQMDDAWFLFTALES-K--NE-  160 (566)
Q Consensus       101 ~a~~~~~~~~-----~~~~~i~~~~~~-~g~~~~-~~~~~~li~~y~---------~~g~~~~A~~~f~~~~~-~--~~-  160 (566)
                      .-..+.++..     ...-+.++.++. .+++|- ...|+..+...-         ...+++..++.+.++.. |  |. 
T Consensus       117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle  196 (660)
T COG5107         117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE  196 (660)
T ss_pred             HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence            4333333221     122344555544 234442 334444433321         12233444444444432 0  00 


Q ss_pred             ------H------------------------------HHHHHHHHHHhCC-----ChhHHHH--------HHHHHHHCCC
Q 047067          161 ------V------------------------------SWNALIAGHARKS-----EGEKALR--------TFSEMLREGF  191 (566)
Q Consensus       161 ------~------------------------------~~~~li~~~~~~g-----~~~~A~~--------~~~~m~~~g~  191 (566)
                            .                              -|..+..|+....     ...++.+        ..+.=.+.|+
T Consensus       197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l  276 (660)
T COG5107         197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL  276 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence                  0                              0111111111000     0000000        0000001111


Q ss_pred             ----------------------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 047067          192 ----------------------EPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDA  249 (566)
Q Consensus       192 ----------------------~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  249 (566)
                                            ......|----.-+...++-+.|.+....    |.+..+..---+-..|.-..+-+..
T Consensus       277 ~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~lse~yel~nd~e~v  352 (660)
T COG5107         277 KLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLSEYYELVNDEEAV  352 (660)
T ss_pred             ccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHHHHHhhcccHHHH
Confidence                                  01111222222233445555555554433    2222222111122223223333333


Q ss_pred             HHHHHhc---------------------------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC
Q 047067          250 EKVFNRL---------------------------------LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPN  295 (566)
Q Consensus       250 ~~~~~~~---------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~  295 (566)
                      ...|++.                                 ..+-..+|...+..-.+..-.+.|..+|-+..+.| +.++
T Consensus       353 ~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~  432 (660)
T COG5107         353 YGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH  432 (660)
T ss_pred             hhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc
Confidence            3333322                                 01123467778887777777889999999999988 6778


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHh-HHhhCCCccHHH-HHHHHHHhhhcCCHHHHHHHHHhC--CCCCC--HHHHHHH
Q 047067          296 QVTFLCVLTACSHAGLLDEGQGYFAL-MKKHGVEPEEAH-YVTFVDLLGRAGLLDRALKFIREM--PIEPT--AAVWGAL  369 (566)
Q Consensus       296 ~~t~~~ll~a~~~~g~~~~a~~~~~~-~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l  369 (566)
                      ...+++++.-++ .|+...|..+|+. +...   ||... -+-.+.-+.+.++-+.|..+|+..  .+..+  ..+|..+
T Consensus       433 vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~km  508 (660)
T COG5107         433 VYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKM  508 (660)
T ss_pred             eeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHH
Confidence            888888887665 5788888999843 3332   33333 345667778889999999999865  22333  4688888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067          370 LGACRMHKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       370 l~~~~~~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      |.--..-|+...+..+-+++.+.-|...
T Consensus       509 i~YEs~~G~lN~v~sLe~rf~e~~pQen  536 (660)
T COG5107         509 IEYESMVGSLNNVYSLEERFRELVPQEN  536 (660)
T ss_pred             HHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence            9888889999999888888888888753

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.97  E-value=1.2  Score=40.29  Aligned_cols=196  Identities=18%  Similarity=0.122  Sum_probs=118.4

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047067          230 AFVGNTLVDMYAKSGSIEDAEKVFNRLL-----KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT  304 (566)
Q Consensus       230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  304 (566)
                      ..........+...+.+..+...+....     ......+......+...+.+..+...+.........+. ........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence            3444555566666666666666665543     22344555555666666667777777777666432221 11222222


Q ss_pred             -HHHccCCHHHHHHHHHhHHhhCC--CccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 047067          305 -ACSHAGLLDEGQGYFALMKKHGV--EPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT--AAVWGALLGACRMHKN  378 (566)
Q Consensus       305 -a~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~  378 (566)
                       .+...|+++.+...+........  ......+......+...++.++|...+.+. ...|+  ...+..+...+...++
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             56677777777777755433111  112333334444466677888888777776 33333  4667777777777778


Q ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          379 VELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       379 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      .+.+...+....+..|.....+..+...+...+.++++...+......
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888888888888887775555666666666666778887777776653

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.94  E-value=0.24  Score=39.79  Aligned_cols=140  Identities=16%  Similarity=0.103  Sum_probs=82.3

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067          272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL  351 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  351 (566)
                      .-.|..++..++..+.....   +..-++-+|--....-+-+-..+.+   ..-|-..|          ...+|++....
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~L---dsIGkiFD----------is~C~NlKrVi   76 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETL---DSIGKIFD----------ISKCGNLKRVI   76 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHH---HHHGGGS-----------GGG-S-THHHH
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHH---HHHhhhcC----------chhhcchHHHH
Confidence            34577777777777776632   3333444443222222222222222   22221122          24567777777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067          352 KFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK  429 (566)
Q Consensus       352 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~  429 (566)
                      ..+-.++  .+.......+.+....|+-+.-.+++..+.+-+..+|....-++++|.+.|...++..++.+.-++|++
T Consensus        77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            7776664  345556677888889999999999999988766667789999999999999999999999999999974

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.79  E-value=0.28  Score=40.53  Aligned_cols=61  Identities=18%  Similarity=0.180  Sum_probs=47.5

Q ss_pred             HHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067          338 VDLLGRAGLLDRALKFIREM----PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG  398 (566)
Q Consensus       338 i~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  398 (566)
                      .....+.|++++|.+.|+.+    |..| ....--.|+.++...+++++|...+++.++++|.++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            34455778999999998887    4333 3345666888899999999999999999999988764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.79  E-value=0.69  Score=47.32  Aligned_cols=55  Identities=11%  Similarity=-0.002  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 047067          195 HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK  258 (566)
Q Consensus       195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  258 (566)
                      ..+...+..-+-+...+..|-++|..|-..         .+++++....+++.+|.++-++.++
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence            344444444455555666666666665332         3466667777777777777776654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.79  E-value=1.3  Score=39.72  Aligned_cols=172  Identities=11%  Similarity=0.058  Sum_probs=85.8

Q ss_pred             HHHHhcCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047067          238 DMYAKSGSIEDAEKVFNRLLK--R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL  311 (566)
Q Consensus       238 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  311 (566)
                      ..+...|++++|.+.|+.+..  |    -..+.-.++.++.+.|++++|...+++.++.-..-...-+...+.+.+....
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence            344556677777777766632  1    1234445666777777777777777777664211111222222222211110


Q ss_pred             HHHHHHHHHhHHhhCCC---ccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHH
Q 047067          312 LDEGQGYFALMKKHGVE---PEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVW--GALLGACRMHKNVELGAYAA  386 (566)
Q Consensus       312 ~~~a~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~  386 (566)
                      .....     .......   --...+..++.-|=......+|...+..+.   +...-  -.+..-|.+.|.+..|..-+
T Consensus        93 ~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~~~~~y~aA~~r~  164 (203)
T PF13525_consen   93 IPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFYYKRGKYKAAIIRF  164 (203)
T ss_dssp             HHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred             Cccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            00000     0000000   001234444555555555555555544441   11100  12345578889999999999


Q ss_pred             HHHHhcCCCCCc---hHHHHHHHHHhcCChhHHH
Q 047067          387 ERIFELDPHDSG---PHILLANIYASAGRLNDAA  417 (566)
Q Consensus       387 ~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~  417 (566)
                      +.+++.-|+.+.   +...++.+|.+.|..+.+.
T Consensus       165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            999988887653   4567888888888887544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.70  E-value=0.065  Score=52.93  Aligned_cols=96  Identities=11%  Similarity=0.010  Sum_probs=62.6

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA----AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      +...++.+..+|.+.|++++|...|++. .+.|+.    .+|..+..+|...|+.++|+..+++++++.+.   .|..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~  150 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL  150 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence            4567777888888888888888888875 666764    35888888888888888888888888886321   121111


Q ss_pred             H--HHHhcCChhHHHHHHHHHHhCCC
Q 047067          405 N--IYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       405 ~--~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      .  .+....+.++..++++.+.+-|.
T Consensus       151 ~DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        151 NDPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             hCcchhhhcccHHHHHHHHHHHHhCC
Confidence            1  11222334455566666665554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.65  E-value=2  Score=42.14  Aligned_cols=72  Identities=19%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCC---C----hHHHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047067          134 SLLDMYARFDQMDDAWFLFTALESK---N----EVSWNALIAGHAR---KSEGEKALRTFSEMLREGFEPTHFSYSSVFT  203 (566)
Q Consensus       134 ~li~~y~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~  203 (566)
                      .|+-.|-...+++...++++.++..   +    ...--...-++.+   .|+.++|++++..+....-.+++.||..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444577777778888887777653   1    1111223344555   6777888888877655555677777766665


Q ss_pred             HH
Q 047067          204 AL  205 (566)
Q Consensus       204 ~~  205 (566)
                      .|
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            54

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=1.3  Score=43.02  Aligned_cols=88  Identities=13%  Similarity=0.036  Sum_probs=55.7

Q ss_pred             HccCCHHHHHHHHHhHHhh---CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhcCCHH
Q 047067          307 SHAGLLDEGQGYFALMKKH---GVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAA-VWGALL--GACRMHKNVE  380 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~ll--~~~~~~g~~~  380 (566)
                      .+.|++..|.+.+...+..   +..|+...|........+.|++.+|+.--++.- .-|.. ++.-+.  .++...++++
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWE  338 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777777777443321   234455667667777788888888888777662 23332 333232  4456678888


Q ss_pred             HHHHHHHHHHhcCCC
Q 047067          381 LGAYAAERIFELDPH  395 (566)
Q Consensus       381 ~a~~~~~~~~~~~p~  395 (566)
                      +|.+-++++.+.+.+
T Consensus       339 ~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  339 EAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHhhccc
Confidence            888888888887654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.55  E-value=0.44  Score=46.03  Aligned_cols=130  Identities=10%  Similarity=0.009  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHH----hhCC-CccH
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKML----RNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMK----KHGV-EPEE  331 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~-~p~~  331 (566)
                      ..|..|...|.-.|+++.|+..-+.-+    +-|-+. ....+..|.+++.-.|+++.|.+.++...    +.|- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            456666777777888998887655432    223221 23467778888888899999988874332    2221 1234


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          332 AHYVTFVDLLGRAGLLDRALKFIREM-------P-IEPTAAVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      ....+|...|.-..++++|+.++.+-       + .--....+-+|.+++...|..+.|+.+.+..++
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45567788888888888888877653       1 112345666788888888988988888887765

>PRK11906 transcriptional regulator; Provisional

Probab=95.44  E-value=1.2  Score=44.41  Aligned_cols=175  Identities=10%  Similarity=0.127  Sum_probs=96.6

Q ss_pred             CCHHHHHHHHHhcCCCCh---hHH--HHHHHHHHHc-----CCHHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHHc---
Q 047067          244 GSIEDAEKVFNRLLKRDV---VSW--NSMLTGCAQH-----GLGKATVRWFEKMLR-NGIAPNQ-VTFLCVLTACSH---  308 (566)
Q Consensus       244 g~~~~A~~~~~~~~~~~~---~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~---  308 (566)
                      ..+..++. -......+.   ..|  ..++.+....     ...+.|+.+|.+... ..+.|+. ..|..+..++..   
T Consensus       232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~  310 (458)
T PRK11906        232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL  310 (458)
T ss_pred             hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence            34444444 223333455   566  6666665442     235578888888882 2256663 333333322211   


Q ss_pred             ------cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHH
Q 047067          309 ------AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVE  380 (566)
Q Consensus       309 ------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~  380 (566)
                            .....+|.+.-....+.+ +-|......+..++.-.|+++.|..+|++. .+.||. .+|......+.-.|+.+
T Consensus       311 ~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~  389 (458)
T PRK11906        311 HGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE  389 (458)
T ss_pred             hcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence                  123344444444444433 334555555666666677788888888777 556654 45555555566678888


Q ss_pred             HHHHHHHHHHhcCCCCCchHHH--HHHHHHhcCChhHHHHHHH
Q 047067          381 LGAYAAERIFELDPHDSGPHIL--LANIYASAGRLNDAARARK  421 (566)
Q Consensus       381 ~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~~  421 (566)
                      +|.+.+++.++++|....+-..  .+++|... ..++|.+++-
T Consensus       390 ~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  431 (458)
T PRK11906        390 EARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY  431 (458)
T ss_pred             HHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence            8888888888888775544332  33345443 3455555543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.23  Score=48.09  Aligned_cols=137  Identities=10%  Similarity=0.026  Sum_probs=98.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCH
Q 047067          268 LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLL  347 (566)
Q Consensus       268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  347 (566)
                      ...|.+.|++..|...|++....  -+           +...-+.++......        .-..++..|.-.|.+.+++
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence            45677888888888888876552  00           011111122222221        1233566788889999999


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047067          348 DRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA-ARARKMMK  424 (566)
Q Consensus       348 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~  424 (566)
                      .+|++..++. ..+| |+...-.=..++...|+++.|+..|+++++++|+|-.+..-|+.+-.+.....+. .++|..|-
T Consensus       274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988877 4344 6666666778899999999999999999999999988888888887777766654 78888886


Q ss_pred             h
Q 047067          425 E  425 (566)
Q Consensus       425 ~  425 (566)
                      .
T Consensus       354 ~  354 (397)
T KOG0543|consen  354 A  354 (397)
T ss_pred             h
Confidence            5

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.39  E-value=0.16  Score=41.46  Aligned_cols=47  Identities=26%  Similarity=0.391  Sum_probs=26.3

Q ss_pred             CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 047067          327 VEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PIEPTAAVWGALLGAC  373 (566)
Q Consensus       327 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~  373 (566)
                      ..|+..+..+++.+|+..|++..|+++++..    +++-+...|..|+.-+
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            3455556666666666666666666655544    4444455666555443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.41  Score=44.57  Aligned_cols=43  Identities=9%  Similarity=0.125  Sum_probs=22.7

Q ss_pred             HHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047067          248 DAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN  290 (566)
Q Consensus       248 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  290 (566)
                      ++..+|+++..   .|+.+-.-|...+...|++.+|...|+.|.+.
T Consensus       211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            44455554432   13444444555555666666666666666663

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.28  E-value=0.18  Score=46.12  Aligned_cols=100  Identities=18%  Similarity=0.180  Sum_probs=79.5

Q ss_pred             HHHHHHhcC--CCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----------
Q 047067          249 AEKVFNRLL--KRDVVSWNSMLTGCAQH-----GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG-----------  310 (566)
Q Consensus       249 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----------  310 (566)
                      .+..|....  ++|-.+|-+++..+..+     +..+-....++.|.+.|+.-|..+|..||+.+-+..           
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            345666665  67888888888888654     566667778899999999999999999998765532           


Q ss_pred             -----CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHH
Q 047067          311 -----LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLD  348 (566)
Q Consensus       311 -----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  348 (566)
                           .-+=++.+++.|...|+.||.++-..|++++++.|-.-
T Consensus       133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~  175 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT  175 (406)
T ss_pred             hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence                 22347788899999999999999999999999988643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.24  E-value=5.2  Score=44.42  Aligned_cols=93  Identities=16%  Similarity=0.187  Sum_probs=61.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHH
Q 047067          236 LVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV--TFLCVLTACSHAGLLD  313 (566)
Q Consensus       236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~  313 (566)
                      ..-+|.++|+.++|.+.|.                  ..|++.+|+.+..+|...   -|..  +-..|..-+..+++.-
T Consensus       958 Aal~Ye~~GklekAl~a~~------------------~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen  958 AALMYERCGKLEKALKAYK------------------ECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHH------------------HhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence            3446777888887766654                  578888888888876541   1222  2245666777788888


Q ss_pred             HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      +|-++......   .|     .-.+..|++...+++|..+....
T Consensus      1017 eAa~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             hHHHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence            88887743221   22     23556778888888888877665

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.11  E-value=7  Score=43.49  Aligned_cols=27  Identities=15%  Similarity=0.277  Sum_probs=15.3

Q ss_pred             hHHHHHHHHHHhcC--CHHHHHHHHHhCC
Q 047067          130 YVGSSLLDMYARFD--QMDDAWFLFTALE  156 (566)
Q Consensus       130 ~~~~~li~~y~~~g--~~~~A~~~f~~~~  156 (566)
                      .-...+|..|.+.+  .++.|+....+..
T Consensus       791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~  819 (1265)
T KOG1920|consen  791 KFNLFILTSYVKSNPPEIEEALQKIKELQ  819 (1265)
T ss_pred             hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            34455666666666  5566655555444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.04  E-value=0.16  Score=42.89  Aligned_cols=66  Identities=24%  Similarity=0.395  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 047067          233 GNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR-----NGIAPNQVT  298 (566)
Q Consensus       233 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t  298 (566)
                      ...++..+...|++++|..+.+.+.   .-|...|..+|.+|...|+..+|++.|+++..     .|+.|+..|
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            3445666666777777777776663   22556677777777777777777777766533     355665544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.87  E-value=0.22  Score=45.67  Aligned_cols=91  Identities=19%  Similarity=0.241  Sum_probs=63.7

Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHH
Q 047067          333 HYVTFVDLLGRAGLLDRALKFIREM-------PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHD---SGPHIL  402 (566)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~  402 (566)
                      .|+.-++. .+.|++.+|...|...       ...||..-|  |..++...|+++.|...|..+.+-.|+.   |..+.-
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            45555443 3456677777777665       234555555  6777788888888888888888765543   456777


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhC
Q 047067          403 LANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       403 l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      |+.+..+.|+.++|..++++..++
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            888888888888888888887664

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.86  E-value=0.35  Score=39.41  Aligned_cols=95  Identities=9%  Similarity=0.148  Sum_probs=61.5

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047067          230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA  309 (566)
Q Consensus       230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  309 (566)
                      ..++.+++-++++.|+++....+++..=.-|+       .+-...+.         --......|+..+..+++.+|+..
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n   65 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN   65 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence            45666777777777777777777665411110       00000000         111234678888888888888888


Q ss_pred             CCHHHHHHHH-HhHHhhCCCccHHHHHHHHHH
Q 047067          310 GLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDL  340 (566)
Q Consensus       310 g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~  340 (566)
                      +++..|.++. .-...++++.+...|..|+.-
T Consensus        66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            8999998888 666677887778888877754

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.84  E-value=0.058  Score=32.22  Aligned_cols=32  Identities=25%  Similarity=0.175  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      .+|..+..++...|++++|+..++++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46777788888888888888888888888886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.73  E-value=3  Score=37.42  Aligned_cols=59  Identities=14%  Similarity=0.072  Sum_probs=27.6

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 047067          166 LIAGHARKSEGEKALRTFSEMLREGFE--PTHFSYSSVFTALASTGSLEQGKWVHAHVIKS  224 (566)
Q Consensus       166 li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  224 (566)
                      ....+.+.|++.+|.+.|+.+...-..  --......+..++-+.|+++.|...++..++.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344455666666666666666553110  01122333444555555555555555555444

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.69  E-value=0.33  Score=44.50  Aligned_cols=98  Identities=16%  Similarity=0.098  Sum_probs=74.2

Q ss_pred             HHHHHHhCC--CCChHHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 047067          148 AWFLFTALE--SKNEVSWNALIAGHARK-----SEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG-----------  209 (566)
Q Consensus       148 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~-----------  209 (566)
                      .++.|...+  ++|-.+|-+++..|...     +..+-.-..++.|.+-|+.-|..+|..||+.+-+..           
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            456677776  67888888888887654     556666777889999999999999999998876543           


Q ss_pred             -----ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 047067          210 -----SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGS  245 (566)
Q Consensus       210 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  245 (566)
                           +-+-+..++++|...|+-||-.+-..|++++.+.+-
T Consensus       133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                 223367778888888888888887778887776654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.62  E-value=3.2  Score=37.27  Aligned_cols=198  Identities=17%  Similarity=0.115  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHH-H
Q 047067          196 FSYSSVFTALASTGSLEQGKWVHAHVIKS-GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLT-G  270 (566)
Q Consensus       196 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~  270 (566)
                      ..+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+......   +......... .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            34444444455555555555554444432 22334444455555566666666666666665431   1122333333 6


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC
Q 047067          271 CAQHGLGKATVRWFEKMLRNGIAP----NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL  346 (566)
Q Consensus       271 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  346 (566)
                      +...|+++.|...+.+...  ..|    ....+......+...++.+.+...+..............+..+...+...++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence            7778888888888888755  233    2334444444466678888888888554443221135667777788888888


Q ss_pred             HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067          347 LDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       347 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      ++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            89998888877 44454 445555555555677799999999999988886

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.60  E-value=1.3  Score=45.01  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 047067          197 SYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGL  276 (566)
Q Consensus       197 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~  276 (566)
                      -...++.-+.+.|-.+.|.++-..         .   ..-.+...++|+++.|.++-++..  +...|..|.....+.|+
T Consensus       297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~  362 (443)
T PF04053_consen  297 QGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN  362 (443)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence            345555555566666665554221         1   123444556777777777655544  45577777777777777


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067          277 GKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE  356 (566)
Q Consensus       277 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (566)
                      ++-|.+.|++...         |..|+-.|.-.|+.+.-.++.......|      -++.....+.-.|+.++..+++.+
T Consensus       363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7777777766443         3344445555666655555554444433      133333444455666666666665


Q ss_pred             CC
Q 047067          357 MP  358 (566)
Q Consensus       357 ~~  358 (566)
                      .+
T Consensus       428 ~~  429 (443)
T PF04053_consen  428 TG  429 (443)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.54  E-value=0.11  Score=30.94  Aligned_cols=33  Identities=30%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHD  396 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  396 (566)
                      ..|..+...+...|++++|++.++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            356667777778888888888888888877764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.39  E-value=2.6  Score=35.16  Aligned_cols=42  Identities=19%  Similarity=0.178  Sum_probs=20.3

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 047067          200 SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK  242 (566)
Q Consensus       200 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  242 (566)
                      .++..+...+.......+++.+.+.+ ..+....+.++..|++
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~   53 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence            34444444455555555555555444 2344444555555544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.33  E-value=5.5  Score=38.68  Aligned_cols=285  Identities=15%  Similarity=0.114  Sum_probs=171.1

Q ss_pred             hHHHHHHHHHh--CCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc--cCCCchHHHHHHHHHHHHhCCCCchhH--HH
Q 047067           60 TWTALISGYSQ--NDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG--AGATDDKFGRQVHAFCLKYGYDWNVYV--GS  133 (566)
Q Consensus        60 ~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~~~~~i~~~~~~~g~~~~~~~--~~  133 (566)
                      -|.+|-.++.-  .|+-..|.++-.+-.+. +.-|...+..+|.+-+  -.|+.+ .+++-|+-|...   |....  ..
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~-~Ar~kfeAMl~d---PEtRllGLR  158 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYE-DARKKFEAMLDD---PETRLLGLR  158 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchH-HHHHHHHHHhcC---hHHHHHhHH
Confidence            46677666654  46666666665544322 5667777888887654  457777 888888888752   22221  11


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh-
Q 047067          134 SLLDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSEGEKALRTFSEMLREG-FEPTHF--SYSSVFTALA-  206 (566)
Q Consensus       134 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~--t~~~ll~~~~-  206 (566)
                      .|.----+.|..+.|+..-+.....   -...|.+.+...+..|+|+.|+++++.-.... +.+|..  .-..++.+-+ 
T Consensus       159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~  238 (531)
T COG3898         159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM  238 (531)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence            2222234668888887776665442   34578889999999999999999998876543 455543  2222333221 


Q ss_pred             --ccCChHHHHHHHHHHHHhCCCCcHhHH-HHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHH
Q 047067          207 --STGSLEQGKWVHAHVIKSGGQLVAFVG-NTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATV  281 (566)
Q Consensus       207 --~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~  281 (566)
                        -..+...|+..-.+..+.  .||..-. -.-..++.+.|++.++-.+++.+-  +|.+..|.  +..+.+.|  +.++
T Consensus       239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~g--dta~  312 (531)
T COG3898         239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSG--DTAL  312 (531)
T ss_pred             HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCC--CcHH
Confidence              122445555555555443  3333222 123467888999999999888883  34444332  22233444  4455


Q ss_pred             HHHHHHHH-cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh-cCCHHHHHHHHHhC
Q 047067          282 RWFEKMLR-NGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR-AGLLDRALKFIREM  357 (566)
Q Consensus       282 ~~~~~m~~-~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~  357 (566)
                      .-+++... ..++|| ..+...+..+-...|++..|..--+...+  ..|....|..|.+.-.. .|+-.++...+.+.
T Consensus       313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa  389 (531)
T COG3898         313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA  389 (531)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence            44444433 125555 45666677777778888777665544332  46777777777766543 47888887777665

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.32  E-value=1  Score=45.03  Aligned_cols=150  Identities=13%  Similarity=0.048  Sum_probs=82.8

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067          272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL  351 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  351 (566)
                      -+..+...-+++-++.++  +.||..+.-.++ +--....+.++.+++++..+.|-    ..+..- ......|..   .
T Consensus       179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~~---~  247 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGHF---W  247 (539)
T ss_pred             HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccch---h
Confidence            344556666666666666  556654433333 23334557777777755444321    011000 000011111   1


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067          352 KFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPH--DSGPHILLANIYASAGRLNDAARARKMMKESGVK  429 (566)
Q Consensus       352 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~  429 (566)
                      +.+.+-..+|-..+=..|..++.+.|+.++|.+.++++++..|.  +..++..|++++...+.+.++..++.+--+-.+.
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence            11111111222333455667778888888888888888876654  4457778888888888888888888876554443


Q ss_pred             cCC
Q 047067          430 KEP  432 (566)
Q Consensus       430 ~~~  432 (566)
                      +..
T Consensus       328 kSA  330 (539)
T PF04184_consen  328 KSA  330 (539)
T ss_pred             chH
Confidence            433

The molecular function of this protein is uncertain.

>PRK11906 transcriptional regulator; Provisional

Probab=94.23  E-value=0.82  Score=45.51  Aligned_cols=127  Identities=8%  Similarity=0.001  Sum_probs=89.1

Q ss_pred             HHHHHHHHcc-----CCHHHHHHHHHhHH-hhCCCccH-HHHHHHHHHhh---------hcCCHHHHHHHHHhC-CCCC-
Q 047067          300 LCVLTACSHA-----GLLDEGQGYFALMK-KHGVEPEE-AHYVTFVDLLG---------RAGLLDRALKFIREM-PIEP-  361 (566)
Q Consensus       300 ~~ll~a~~~~-----g~~~~a~~~~~~~~-~~~~~p~~-~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~~p-  361 (566)
                      ..++.+..+.     ...+.|..+|.... ...++|+- ..|..+...+.         ......+|.++.++. .+.| 
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4455555442     23566777884444 33456653 33433332221         123455667776665 4455 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      |......+..+....++++.|...|+++..++|+.+.++...+....-.|+.++|.+.+++..+.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            66777777777778888999999999999999999999999999999999999999999986653

>PRK15331 chaperone protein SicA; Provisional

Probab=94.17  E-value=0.45  Score=40.31  Aligned_cols=84  Identities=10%  Similarity=0.055  Sum_probs=49.7

Q ss_pred             HHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067          240 YAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       240 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  316 (566)
                      +...|++++|..+|+-+.   ..|..-|..|..++...+++++|+..|......+. -|+..+-....++...|+.+.|+
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence            345677777777776552   23455566666666667777777777666554332 23344445555666666666666


Q ss_pred             HHHHhHHh
Q 047067          317 GYFALMKK  324 (566)
Q Consensus       317 ~~~~~~~~  324 (566)
                      ..|.....
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            66655444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.13  E-value=0.75  Score=43.79  Aligned_cols=46  Identities=17%  Similarity=0.194  Sum_probs=24.7

Q ss_pred             HHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHH
Q 047067          170 HARKSEGEKALRTFSEMLREG--FEPTHFSYSSVFTALASTGSLEQGK  215 (566)
Q Consensus       170 ~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~~a~  215 (566)
                      +.++.+.++|+..+.+-...-  ..--..+|..+..+.+..|.++++.
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL   63 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML   63 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence            445667777777776655421  1111234555556666666555543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.06  E-value=5.2  Score=37.41  Aligned_cols=33  Identities=24%  Similarity=0.273  Sum_probs=17.9

Q ss_pred             hcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          391 ELDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       391 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      ..+|+|...-..|+..|...|+.++|...+-.+
T Consensus       230 aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~  262 (304)
T COG3118         230 AADPDDVEAALALADQLHLVGRNEAALEHLLAL  262 (304)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345555555555555555555555555544444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.80  E-value=2.2  Score=43.27  Aligned_cols=133  Identities=19%  Similarity=0.235  Sum_probs=85.6

Q ss_pred             HHHHHcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC
Q 047067          269 TGCAQHGLGKATVRWFE--KMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL  346 (566)
Q Consensus       269 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  346 (566)
                      ......|+++++.++.+  ++.. .+  +..-...++.-+.+.|.++.|.++-..       |+     .-.++..++|+
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D-------~~-----~rFeLAl~lg~  333 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD-------PD-----HRFELALQLGN  333 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS--------HH-----HHHHHHHHCT-
T ss_pred             HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC-------hH-----HHhHHHHhcCC
Confidence            34455777888766664  1121 12  244467777777888888888887521       11     12355668899


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          347 LDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       347 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ++.|.++.++.+   +...|..|......+|+++.|++.+++.        .-+..|+-.|.-.|+.+.-.++-+....+
T Consensus       334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            999988887764   7779999999999999999999888874        35667777888888887777777666665


Q ss_pred             C
Q 047067          427 G  427 (566)
Q Consensus       427 g  427 (566)
                      |
T Consensus       403 ~  403 (443)
T PF04053_consen  403 G  403 (443)
T ss_dssp             T
T ss_pred             c
Confidence            5

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.80  E-value=3.4  Score=34.40  Aligned_cols=122  Identities=15%  Similarity=0.249  Sum_probs=68.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047067          234 NTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG  310 (566)
Q Consensus       234 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g  310 (566)
                      ..++..+.+.+........++.+...   +....|.++..|++.+ ..+.++.++.      .++......++..|.+.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            34555555566666666666665332   3456677777776653 3344444442      123344455666777777


Q ss_pred             CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047067          311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA-GLLDRALKFIREMPIEPTAAVWGALLGACR  374 (566)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~  374 (566)
                      .++++..++..+..         +...++.+... ++++.|.+++.+-   .+...|..++..+.
T Consensus        84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l  136 (140)
T smart00299       84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL  136 (140)
T ss_pred             cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence            77777666644321         22233333333 6777777777763   25567777766654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.68  E-value=11  Score=39.86  Aligned_cols=326  Identities=10%  Similarity=0.021  Sum_probs=173.2

Q ss_pred             HHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCch--HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047067           63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDD--KFGRQVHAFCLKYGYDWNVYVGSSLLDMYA  140 (566)
Q Consensus        63 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~~~~~i~~~~~~~g~~~~~~~~~~li~~y~  140 (566)
                      .+|+-+...+.+..|+++-..|...-.+- ...|.....-..+..+..  +.+..+-+.+... . .....|..+..--.
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay  518 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY  518 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence            45566666667777777655543211111 333444444443332221  1223332222211 1 23445666666667


Q ss_pred             hcCCHHHHHHHHHhCCCC--------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 047067          141 RFDQMDDAWFLFTALESK--------NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLE  212 (566)
Q Consensus       141 ~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~  212 (566)
                      .+|+.+-|..+.+.=+..        +..-+..-+.-..+.|+.+-...++-.|...   .+...|...+      .+..
T Consensus       519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p  589 (829)
T KOG2280|consen  519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP  589 (829)
T ss_pred             hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence            788888888877654431        2223444455556666666666666555442   1111221111      2233


Q ss_pred             HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH--hc-----CCCChhHHHHHHHHHHHcCC---HHHH--
Q 047067          213 QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFN--RL-----LKRDVVSWNSMLTGCAQHGL---GKAT--  280 (566)
Q Consensus       213 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~-----~~~~~~~~~~li~~~~~~g~---~~~A--  280 (566)
                      .|..+|.+..+..-.      ..|-+.|-...+. .+...|.  ..     ...-..........+++...   -++|  
T Consensus       590 ~a~~lY~~~~r~~~~------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e  662 (829)
T KOG2280|consen  590 LALSLYRQFMRHQDR------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE  662 (829)
T ss_pred             hhhHHHHHHHHhhch------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence            445555554442101      1122223222222 2222221  10     11111222223333433322   1111  


Q ss_pred             -----HHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHH
Q 047067          281 -----VRWFEKMLR-NGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFI  354 (566)
Q Consensus       281 -----~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  354 (566)
                           +.+.+.+.. .|..-...|.+--+.-+...|...+|.++-+..+    .||...|-.-+.+++..+++++-+++-
T Consensus       663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA  738 (829)
T KOG2280|consen  663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA  738 (829)
T ss_pred             HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence                 222222222 2333344556666667778899999988875432    578888888899999999999988888


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067          355 REMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKM  422 (566)
Q Consensus       355 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  422 (566)
                      +++.   .+.-|.-+..+|.+.|+.++|.+.+-+.-.+        .-...+|.+.|++.+|.++--+
T Consensus       739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             hccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence            8763   2556777889999999999998887664322        2577889999999998876443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.63  E-value=2.2  Score=40.34  Aligned_cols=113  Identities=12%  Similarity=0.113  Sum_probs=58.7

Q ss_pred             cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHH--HHHHHHccCCHHHH
Q 047067          243 SGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV--TFLC--VLTACSHAGLLDEG  315 (566)
Q Consensus       243 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~--ll~a~~~~g~~~~a  315 (566)
                      .|+..+|...++++.+   .|..+|+--=.++..+|+.+.-...+++.... ..||..  +|..  +.-++...|-+++|
T Consensus       116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            4556666555655532   35566666666666666666666666666543 233332  2211  11223345666666


Q ss_pred             HHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          316 QGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       316 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      ++.-+...+.+ +.|.-.-.++...+.-.|+..++.++..+-
T Consensus       195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            66554433322 222323344555556666666666666554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.45  E-value=3.3  Score=42.65  Aligned_cols=114  Identities=15%  Similarity=0.069  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHhHHhhCC-Cc--cHHHHHHHHHHhhhcCCHHHHH
Q 047067          276 LGKATVRWFEKMLRNGIAPNQVTFLCVL-TACSHAGLLDEGQGYFALMKKHGV-EP--EEAHYVTFVDLLGRAGLLDRAL  351 (566)
Q Consensus       276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~  351 (566)
                      ..+.|.+++..+.+.  -|+...|...- +.+...|++++|.+.|+....... -|  ....+--+.-.+.-.+++++|.
T Consensus       248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            344555555555552  34443332222 233345555555555532221000 01  1112223344455566666666


Q ss_pred             HHHHhC-C-CCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHh
Q 047067          352 KFIREM-P-IEPTAAVWGALLGA-CRMHKNV-------ELGAYAAERIFE  391 (566)
Q Consensus       352 ~~~~~~-~-~~p~~~~~~~ll~~-~~~~g~~-------~~a~~~~~~~~~  391 (566)
                      +.|..+ . -..+...|.-+..+ +...|+.       ++|.++++++-.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            666665 1 12223333333333 2344555       555556555543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.28  E-value=6.1  Score=36.22  Aligned_cols=163  Identities=19%  Similarity=0.201  Sum_probs=83.8

Q ss_pred             HHhcCCHHHHHHHHHhCCCC------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---c
Q 047067          139 YARFDQMDDAWFLFTALESK------NEVSWNALIAGHARKSEGEKALRTFSEMLREG-FEPTHFSYSSVFTALAS---T  208 (566)
Q Consensus       139 y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~---~  208 (566)
                      -.+.|++++|.+.|+.+..+      ...+--.++.++.+.+++++|+..+++....- -.|| .-|..-|.+.+.   .
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i  122 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI  122 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence            34668888888888888753      23345556677888888888888888877643 2232 233333333331   1


Q ss_pred             ----CChHHHHHHHH---HHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH--HHHHHHHHHcCCHHH
Q 047067          209 ----GSLEQGKWVHA---HVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSW--NSMLTGCAQHGLGKA  279 (566)
Q Consensus       209 ----~~~~~a~~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~  279 (566)
                          .+...+++.+.   .+++.- |.+..+              .+|......+.  |....  -.+..-|.+.|.+..
T Consensus       123 ~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya--------------~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         123 DDVTRDQSAARAAFAAFKELVQRY-PNSRYA--------------PDAKARIVKLN--DALAGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHC-CCCcch--------------hhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHH
Confidence                12222222222   222221 111111              11111110000  11111  123445778888888


Q ss_pred             HHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067          280 TVRWFEKMLRNGIAPN----QVTFLCVLTACSHAGLLDEGQGYFAL  321 (566)
Q Consensus       280 A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~  321 (566)
                      |..-+++|++.  -|+    ...+-.+..+|...|..++|...-..
T Consensus       186 A~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v  229 (254)
T COG4105         186 AINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKV  229 (254)
T ss_pred             HHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            88888888875  222    23444555666666666666655433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.02  E-value=8.5  Score=38.80  Aligned_cols=99  Identities=17%  Similarity=0.142  Sum_probs=65.7

Q ss_pred             HHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHH
Q 047067          299 FLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMP-I-EPTA--AVWGALLGAC  373 (566)
Q Consensus       299 ~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~ll~~~  373 (566)
                      =..+..++-+.|+.++|.+.+ ++++.........+...|+..|...+.+.++..++.+-. + -|..  ..|+..+--.
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka  341 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA  341 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence            345666777889999999999 444444333345567778899999999999999988773 1 2333  4566555444


Q ss_pred             HhcCC---------------HHHHHHHHHHHHhcCCCCC
Q 047067          374 RMHKN---------------VELGAYAAERIFELDPHDS  397 (566)
Q Consensus       374 ~~~g~---------------~~~a~~~~~~~~~~~p~~~  397 (566)
                      +..++               -..|.++..++++.+|.-+
T Consensus       342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence            43332               1346688889888887665

The molecular function of this protein is uncertain.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.80  E-value=0.42  Score=41.50  Aligned_cols=89  Identities=18%  Similarity=0.147  Sum_probs=70.0

Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067          339 DLLGRAGLLDRALKFIREM-PIEPT------AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG  411 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  411 (566)
                      .-+.+.|++++|..-|.+. .+.|.      .+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME  182 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence            3456778888888777765 22221      2445555567788899999999999999999998888888899999999


Q ss_pred             ChhHHHHHHHHHHhCC
Q 047067          412 RLNDAARARKMMKESG  427 (566)
Q Consensus       412 ~~~~a~~~~~~m~~~g  427 (566)
                      ++++|..-++++.+..
T Consensus       183 k~eealeDyKki~E~d  198 (271)
T KOG4234|consen  183 KYEEALEDYKKILESD  198 (271)
T ss_pred             hHHHHHHHHHHHHHhC
Confidence            9999999999998743

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=92.78  E-value=11  Score=37.36  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhHHhhC-CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHH
Q 047067          297 VTFLCVLTACSHAGLLDEGQGYFALMKKHG-VEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVW-GALLGAC  373 (566)
Q Consensus       297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~  373 (566)
                      ..|...+++-.+..-++.|..+|-...+.+ ..+++.++++++.-++ .|+..-|..+|+-- ..-||...| +-.+.-+
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL  476 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL  476 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            345667777777888999999997777777 5678888898888665 57888899998754 334565444 4556666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          374 RMHKNVELGAYAAERIFELDP--HDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ..-++-+.|..+|+..++.-.  .-...|..++..-+.-|+...+..+-++|.+
T Consensus       477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            777888899999997664221  1234788888888888999888888777765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.44  E-value=6.3  Score=42.11  Aligned_cols=140  Identities=14%  Similarity=0.113  Sum_probs=71.6

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067          237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  316 (566)
                      .+-+.+.|++++|...|-+-..--..  ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.
T Consensus       375 gd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~  451 (933)
T KOG2114|consen  375 GDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT  451 (933)
T ss_pred             HHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence            34445566777766655543221111  12444455555555666666666666654 3333455666777777766666


Q ss_pred             HHHHhHHhhCC-CccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067          317 GYFALMKKHGV-EPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAER  388 (566)
Q Consensus       317 ~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  388 (566)
                      ++.+... .|. ..|   ....+..+.+.+-+++|..+-.+...  +......++   -..+++++|++.++.
T Consensus       452 efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  452 EFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK--HEWVLDILL---EDLHNYEEALRYISS  515 (933)
T ss_pred             HHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence            6554322 121 112   22345556666666666666655532  222222222   334666666665543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.39  E-value=15  Score=37.91  Aligned_cols=382  Identities=11%  Similarity=0.059  Sum_probs=216.7

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHccCCC--CCcc-hHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc
Q 047067           28 AMQNTILNAYAKCGCLDEARKLFDEMPV--KDMV-TWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG  104 (566)
Q Consensus        28 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  104 (566)
                      ..++.||.--......+.++.+++.+..  |... -|-....-=.+.|..+.+.++|++-+. |++-+...|...+.-+.
T Consensus        46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~  124 (577)
T KOG1258|consen   46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK  124 (577)
T ss_pred             cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh
Confidence            3444555433333344555666665543  3222 244444444567888888999988876 46666677777776665


Q ss_pred             cCCCchHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHH---hC------
Q 047067          105 AGATDDKFGRQVHAFCLKY-GYD-WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHA---RK------  173 (566)
Q Consensus       105 ~~~~~~~~~~~i~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~~------  173 (566)
                      .....+...+..++.++.. |.+ .+...|...|..-..++++.....+++++.+--...++..-.-|.   ++      
T Consensus       125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l  204 (577)
T KOG1258|consen  125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKIL  204 (577)
T ss_pred             ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhh
Confidence            5443333777777777664 322 234556777777777888888888888877633333333222222   11      


Q ss_pred             CChhHHHHHHHHHHHC----CCCCCHHHHHHHH------------------HHHh-------ccCChHHHHHHHHHHHHh
Q 047067          174 SEGEKALRTFSEMLRE----GFEPTHFSYSSVF------------------TALA-------STGSLEQGKWVHAHVIKS  224 (566)
Q Consensus       174 g~~~~A~~~~~~m~~~----g~~pd~~t~~~ll------------------~~~~-------~~~~~~~a~~~~~~~~~~  224 (566)
                      -..+++.++-......    -..+.......-+                  ..+.       ........+..++.-++.
T Consensus       205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr  284 (577)
T KOG1258|consen  205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR  284 (577)
T ss_pred             cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence            1122222222111110    0001111111111                  1111       111112222222222222


Q ss_pred             C-------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047067          225 G-------GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD---VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP  294 (566)
Q Consensus       225 ~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  294 (566)
                      .       ..++..+|...++.-.+.|+.+.+.-+|++..-|-   ...|--.+.-....|+.+-|-.++....+--++-
T Consensus       285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~  364 (577)
T KOG1258|consen  285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK  364 (577)
T ss_pred             cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence            1       13446678888888899999999999999886552   2344444444444588888888777766543332


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH-HHHHHHHHHhhhcCCHHHHH---HHHHhC-CCCCCHHHHHHH
Q 047067          295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE-AHYVTFVDLLGRAGLLDRAL---KFIREM-PIEPTAAVWGAL  369 (566)
Q Consensus       295 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l  369 (566)
                      ...+-..-...+-..|++..|..+++.+...-  |+. ..-.--+.+..+.|..+.+.   +++... +.+-+..+.+.+
T Consensus       365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l  442 (577)
T KOG1258|consen  365 TPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL  442 (577)
T ss_pred             CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence            22222222233456789999999997766543  543 23333456677889998888   555544 223233333333


Q ss_pred             HH-----HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067          370 LG-----ACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       370 l~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  412 (566)
                      .-     -+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus       443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence            22     24567899999999999999999999899988888776653

>PRK09687 putative lyase; Provisional

Probab=92.16  E-value=11  Score=35.81  Aligned_cols=80  Identities=11%  Similarity=0.036  Sum_probs=36.8

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047067          127 WNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEG----EKALRTFSEMLREGFEPTHFSYSSVF  202 (566)
Q Consensus       127 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~~t~~~ll  202 (566)
                      +|..+....+..+...|..+....+..-+..+|...-..-+.++.+.|+.    .+++..+..+...  .||...-...+
T Consensus        35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~  112 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI  112 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence            34444444555555555433333333323334544444555555555543    3455555555332  34444444444


Q ss_pred             HHHhcc
Q 047067          203 TALAST  208 (566)
Q Consensus       203 ~~~~~~  208 (566)
                      .++...
T Consensus       113 ~aLG~~  118 (280)
T PRK09687        113 NATGHR  118 (280)
T ss_pred             HHHhcc
Confidence            444443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=92.16  E-value=17  Score=38.13  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=25.2

Q ss_pred             cCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067           40 CGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILF   81 (566)
Q Consensus        40 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~   81 (566)
                      -|++++|++++-.|..+|..     |..+.+.|++-...+++
T Consensus       747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~  783 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLI  783 (1189)
T ss_pred             hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHH
Confidence            48999999999999888753     34445555555544444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.12  E-value=1.2  Score=41.65  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=62.3

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 047067          230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLR-----NGIAPNQVTFLC  301 (566)
Q Consensus       230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~  301 (566)
                      ..++..++..+..+|+.+.+.+.++++...   +...|..++.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            445678899999999999999999988543   678999999999999999999999998866     577777666655


Q ss_pred             HHHH
Q 047067          302 VLTA  305 (566)
Q Consensus       302 ll~a  305 (566)
                      ...+
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=92.10  E-value=0.49  Score=38.01  Aligned_cols=56  Identities=13%  Similarity=-0.051  Sum_probs=52.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      -+.+..|+++.|++.|.+.+.+-|.++++|+.-+.+|.-+|+.++|..-+++..+.
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL  106 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL  106 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence            45678899999999999999999999999999999999999999999999988773

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.09  E-value=19  Score=38.41  Aligned_cols=69  Identities=14%  Similarity=0.269  Sum_probs=36.3

Q ss_pred             HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047067          300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNV  379 (566)
Q Consensus       300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~  379 (566)
                      ...+..|.+.|-+++-.-++..|-        .++.+|.-.--+.+++++|.++.++   +-|...|..||+.+...-.+
T Consensus       638 ekA~eiC~q~~~~~E~VYlLgrmG--------n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~  706 (846)
T KOG2066|consen  638 EKALEICSQKNFYEELVYLLGRMG--------NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEF  706 (846)
T ss_pred             HHHHHHHHhhCcHHHHHHHHHhhc--------chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHH
Confidence            344445555555555555543321        1233333334445556666666554   34777888888776655433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.96  E-value=8.6  Score=34.21  Aligned_cols=160  Identities=16%  Similarity=0.143  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHH
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFV  338 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li  338 (566)
                      +.+||-+.--+...|+++.|.+.|+...+.  .|. ..++..-.-++--.|++..|.+-+ ..-....-.|-...|--++
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~  176 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN  176 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence            456777777777788888888888887774  332 222222222334467777776655 3323222233233332222


Q ss_pred             HHhhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhc
Q 047067          339 DLLGRAGLLDRALKFI-REMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHD-------SGPHILLANIYASA  410 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~  410 (566)
                         -+.-++.+|..-+ ++.. ..|..-|...|-.+-- |++. -+.+++++.+...++       ..+|..|+.-|...
T Consensus       177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~  250 (297)
T COG4785         177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL  250 (297)
T ss_pred             ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence               2334556665443 3332 3455556555544321 1111 122333433322222       24788999999999


Q ss_pred             CChhHHHHHHHHHHhCCC
Q 047067          411 GRLNDAARARKMMKESGV  428 (566)
Q Consensus       411 g~~~~a~~~~~~m~~~g~  428 (566)
                      |..++|..+|+..+..++
T Consensus       251 G~~~~A~~LfKLaiannV  268 (297)
T COG4785         251 GDLDEATALFKLAVANNV  268 (297)
T ss_pred             ccHHHHHHHHHHHHHHhH
Confidence            999999999999876543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.91  E-value=0.9  Score=42.45  Aligned_cols=62  Identities=27%  Similarity=0.295  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|++.++.+.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34455666677777788888888888888888888888888888888888888888877765

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.77  E-value=9.9  Score=34.52  Aligned_cols=50  Identities=12%  Similarity=0.108  Sum_probs=24.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHhcCChhHHHH
Q 047067          368 ALLGACRMHKNVELGAYAAERIFEL----DPHDSGPHILLANIYASAGRLNDAAR  418 (566)
Q Consensus       368 ~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~  418 (566)
                      +.|-.+....++..|++.++.--++    .|++..+...|+.+|- .|+.+++..
T Consensus       195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k  248 (308)
T KOG1585|consen  195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK  248 (308)
T ss_pred             HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence            3333444445566666666554432    2444445555555543 344444433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.67  E-value=0.36  Score=29.26  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=20.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067          399 PHILLANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       399 ~~~~l~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      ++..|+++|.+.|+|++|.+++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46778888999999999999888854

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.32  E-value=13  Score=34.92  Aligned_cols=117  Identities=10%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             HHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhHHH---HHHHHHHHcCCHH
Q 047067          203 TALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRD-VVSWN---SMLTGCAQHGLGK  278 (566)
Q Consensus       203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~g~~~  278 (566)
                      ......++..++..+++.+...... +....-.+..+|...|+.+.|..++..++... ...|.   +-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            3445677888888888887776532 34455668888899999999999998886432 11222   2233333333333


Q ss_pred             HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHH-HhHH
Q 047067          279 ATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYF-ALMK  323 (566)
Q Consensus       279 ~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~-~~~~  323 (566)
                      +...+-++.-.   .| |...-..+...+...|+.+.|.+.+ ..+.
T Consensus       221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33333333332   34 4444445555666677777777666 4443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.31  E-value=0.38  Score=28.52  Aligned_cols=31  Identities=19%  Similarity=0.140  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067          365 VWGALLGACRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      +|..+...+...|+.++|...+++.++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4566666777777777777777777777763

...

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.86  E-value=15  Score=35.05  Aligned_cols=49  Identities=14%  Similarity=0.334  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHhC
Q 047067          177 EKALRTFSEMLREGFEPTHFSYSSVFTALAS--TG----SLEQGKWVHAHVIKSG  225 (566)
Q Consensus       177 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~  225 (566)
                      ++.+.+++.|.+.|++-+..+|.+..-....  ..    ....+..+|+.|.+..
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H  133 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH  133 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence            4456778888888888888777664444333  22    2345666777776653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.70  E-value=3.6  Score=35.13  Aligned_cols=49  Identities=31%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             HhcCCHHHHHHHHHhCCCCChHHHHHH-----HHHHHhCCChhHHHHHHHHHHH
Q 047067          140 ARFDQMDDAWFLFTALESKNEVSWNAL-----IAGHARKSEGEKALRTFSEMLR  188 (566)
Q Consensus       140 ~~~g~~~~A~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~  188 (566)
                      ++.+..++|+.-|..+.+.+--.|-.|     .....+.|+...|...|++.-.
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~  122 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA  122 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence            334455555555555554433222222     2234455555555555555544

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.47  E-value=14  Score=33.98  Aligned_cols=241  Identities=15%  Similarity=0.231  Sum_probs=142.6

Q ss_pred             cCCHHHHHHHHHhCCC----C---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccC
Q 047067          142 FDQMDDAWFLFTALES----K---NEVSWNALIAGHARKSEGEKALRTFSEMLRE---GF--EPTHFSYSSVFTALASTG  209 (566)
Q Consensus       142 ~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~pd~~t~~~ll~~~~~~~  209 (566)
                      ..+.++|+.-|.+..+    +   .-.+...||..+.+.+++++.++.|.+|..-   .+  .-+..+.++++...+...
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            3467778877776543    2   2334566788899999999999988888542   11  224556777887777666


Q ss_pred             ChHHHHHHHHHHHHh-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------------ChhHHHHHHH
Q 047067          210 SLEQGKWVHAHVIKS-----GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR---------------DVVSWNSMLT  269 (566)
Q Consensus       210 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~  269 (566)
                      +.+.-...++.-++.     +-..=-.+-+-|...|...|.+.+-.+++.++.+.               -...|..=|.
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            666655555443321     00011112345777888888888888888776211               1346777788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HccCCHHHHHHHH-HhHHhhCC--Ccc---HHHHHHH
Q 047067          270 GCAQHGLGKATVRWFEKMLRN-GIAPNQVTFLCVLTAC-----SHAGLLDEGQGYF-ALMKKHGV--EPE---EAHYVTF  337 (566)
Q Consensus       270 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~-----~~~g~~~~a~~~~-~~~~~~~~--~p~---~~~~~~l  337 (566)
                      .|....+-.+...+|++.+.- .--|.+... .+|+-|     .+.|.+++|..-| +....+.-  .|.   ..-|-.|
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL  278 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL  278 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence            888888877777888876552 233454443 445555     3467888876544 55544322  222   2235566


Q ss_pred             HHHhhhcCCHHHHHHHHH--hC-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067          338 VDLLGRAGLLDRALKFIR--EM-PI--EPTAAVWGALLGACRMHKNVELGAYAAERIFELD  393 (566)
Q Consensus       338 i~~~~~~g~~~~A~~~~~--~~-~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  393 (566)
                      ..++.+.|--     -|+  +. |.  .|.......|+.+|..+. ..+    |+++++.+
T Consensus       279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd-I~e----FE~Il~~~  329 (440)
T KOG1464|consen  279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNND-IIE----FERILKSN  329 (440)
T ss_pred             HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhccc-HHH----HHHHHHhh
Confidence            6777666521     011  11 33  345567788888886543 333    55555433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.44  E-value=2.9  Score=38.57  Aligned_cols=55  Identities=11%  Similarity=0.127  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 047067          264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAP--NQVTFLCVLTACSHAGLLDEGQGYF  319 (566)
Q Consensus       264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~  319 (566)
                      |+.-+..| +.|++..|...|...++....-  ....+--|..++...|+++.|..+|
T Consensus       145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f  201 (262)
T COG1729         145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIF  201 (262)
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHH
Confidence            55444433 3455667777766666642110  1223334555555555555555555

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.40  E-value=0.5  Score=28.62  Aligned_cols=28  Identities=18%  Similarity=0.075  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067          365 VWGALLGACRMHKNVELGAYAAERIFEL  392 (566)
Q Consensus       365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~  392 (566)
                      +|..|...|...|++++|+.++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677888888888888888888886644

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=89.84  E-value=8.8  Score=36.70  Aligned_cols=91  Identities=13%  Similarity=0.165  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhCCC-------CChHHHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC-
Q 047067          145 MDDAWFLFTALES-------KNEVSWNALIAGHARKSEG----EKALRTFSEMLREGFEPTHF--SYSSVFTALASTGS-  210 (566)
Q Consensus       145 ~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~-  210 (566)
                      ...|..+|+.|.+       ++..++.+|+..  ..++.    +.+...|+.+...|+..+..  +.+.++..+..... 
T Consensus       119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~  196 (297)
T PF13170_consen  119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE  196 (297)
T ss_pred             HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence            3456667777664       244455555544  33332    45667777777777655432  33333333332222 


Q ss_pred             -hHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067          211 -LEQGKWVHAHVIKSGGQLVAFVGNTLV  237 (566)
Q Consensus       211 -~~~a~~~~~~~~~~~~~~~~~~~~~li  237 (566)
                       ...+..+++.+.+.|+++....|..+.
T Consensus       197 ~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  197 KVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHcCCccccccccHHH
Confidence             336677777777778777666665444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.79  E-value=0.85  Score=26.97  Aligned_cols=28  Identities=11%  Similarity=0.241  Sum_probs=20.6

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      .+|..+...|...|++++|+..|++.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            4577777777888888888888887776

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=89.57  E-value=28  Score=35.96  Aligned_cols=76  Identities=16%  Similarity=0.015  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhCCCC-------ChHHHHHHHHHHHhCCChhHHHHHH
Q 047067          112 FGRQVHAFCLKYGYDWNVYVG-SSLLDMYARFDQMDDAWFLFTALESK-------NEVSWNALIAGHARKSEGEKALRTF  183 (566)
Q Consensus       112 ~~~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~  183 (566)
                      .+.+++..+.+.  -|+...| -.-..++...|++++|.+.|+.....       ....+--+.-.+.-..+|++|.+.|
T Consensus       251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            455555555443  1222222 22334455556666666666643321       1122223333445555666666666


Q ss_pred             HHHHHC
Q 047067          184 SEMLRE  189 (566)
Q Consensus       184 ~~m~~~  189 (566)
                      ..+.+.
T Consensus       329 ~~L~~~  334 (468)
T PF10300_consen  329 LRLLKE  334 (468)
T ss_pred             HHHHhc
Confidence            666554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.53  E-value=0.67  Score=43.71  Aligned_cols=110  Identities=13%  Similarity=0.095  Sum_probs=75.8

Q ss_pred             HHHHccCCHHHHHHHHHhHHhhCCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 047067          304 TACSHAGLLDEGQGYFALMKKHGVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVE  380 (566)
Q Consensus       304 ~a~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~  380 (566)
                      +-|.++|.+++|+..+.....  ..| +..++..-..+|.+..++..|..=.+.. .+.. -...|..-+.+-...|+..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            468899999999999954332  345 7777777788899999988777655544 2111 1235555555556678899


Q ss_pred             HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067          381 LGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA  419 (566)
Q Consensus       381 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  419 (566)
                      +|.+-++.+++++|.+.    -|-..|+......++.-+
T Consensus       183 EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~  217 (536)
T KOG4648|consen  183 EAKKDCETVLALEPKNI----ELKKSLARINSLRERKIA  217 (536)
T ss_pred             HHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHH
Confidence            99999999999999854    344455555555555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.48  E-value=20  Score=34.22  Aligned_cols=158  Identities=12%  Similarity=0.072  Sum_probs=102.2

Q ss_pred             hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHH
Q 047067          172 RKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS---GGQLVAFVGNTLVDMYAKSGSIED  248 (566)
Q Consensus       172 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~  248 (566)
                      .+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-+..+++++..   ++|..+++-..+.-++..+|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            467777887788887764 4566777777778888888888888888877654   233333443444555667899999


Q ss_pred             HHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHccCCHHHHHHHH-H
Q 047067          249 AEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA----PNQVTFLCVLTACSHAGLLDEGQGYF-A  320 (566)
Q Consensus       249 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~a~~~~g~~~~a~~~~-~  320 (566)
                      |++.-++..+-   |.-+-.+....+..+|+..++.+...+-... .+    .-..-|-...-.+...+.++.|..+| .
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            99988887544   4444556667777888898888877654321 11    01122333333455668899999999 5


Q ss_pred             hHHhhCCCccH
Q 047067          321 LMKKHGVEPEE  331 (566)
Q Consensus       321 ~~~~~~~~p~~  331 (566)
                      .+.+.--+.|.
T Consensus       273 ei~k~l~k~Da  283 (491)
T KOG2610|consen  273 EIWKRLEKDDA  283 (491)
T ss_pred             HHHHHhhccch
Confidence            55544333343

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=89.45  E-value=1.3  Score=28.22  Aligned_cols=28  Identities=14%  Similarity=0.302  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRN  290 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~  290 (566)
                      +|..+...|.+.|++++|+++|++.++.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4566677777777777777777777763

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.38  E-value=23  Score=34.78  Aligned_cols=149  Identities=11%  Similarity=-0.022  Sum_probs=75.0

Q ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc--HHH
Q 047067          259 RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP---NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE--EAH  333 (566)
Q Consensus       259 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~--~~~  333 (566)
                      ....+|..+...+.+.|+++.|...+.++...+..+   +......-....-..|+..+|...++......+..+  ...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            345677788888888888888888888877643211   222333334445556777777777744443221111  111


Q ss_pred             HHHHHHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067          334 YVTFVDLLGRAGLLDRALKF-IREMPIEPTAAVWGALLGACRM------HKNVELGAYAAERIFELDPHDSGPHILLANI  406 (566)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  406 (566)
                      ...+...+..  ..+..... ........-...+..+..-+..      .++.+++...|+++.++.|.....+..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111110000  00000000 0000000001222222222333      3778889999999999999887777777666


Q ss_pred             HHh
Q 047067          407 YAS  409 (566)
Q Consensus       407 ~~~  409 (566)
                      +.+
T Consensus       302 ~~~  304 (352)
T PF02259_consen  302 NDK  304 (352)
T ss_pred             HHH
Confidence            553

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK11619 lytic murein transglycosylase; Provisional

Probab=89.25  E-value=35  Score=36.74  Aligned_cols=94  Identities=14%  Similarity=0.114  Sum_probs=49.4

Q ss_pred             HHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 047067          115 QVHAFCLKYG-YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP  193 (566)
Q Consensus       115 ~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  193 (566)
                      ++...+.+.. .+.....-..-+..+.+.+++....+ |..-+..+...--....+....|+.++|....+.+=..| ..
T Consensus        84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~  161 (644)
T PRK11619         84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KS  161 (644)
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CC
Confidence            3444444432 22233334444555666777777777 332223355555556667777787777766666664444 22


Q ss_pred             CHHHHHHHHHHHhccCC
Q 047067          194 THFSYSSVFTALASTGS  210 (566)
Q Consensus       194 d~~t~~~ll~~~~~~~~  210 (566)
                      .+.....+++.+.+.|.
T Consensus       162 ~p~~cd~l~~~~~~~g~  178 (644)
T PRK11619        162 LPNACDKLFSVWQQSGK  178 (644)
T ss_pred             CChHHHHHHHHHHHcCC
Confidence            33445555555554443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=89.09  E-value=23  Score=34.29  Aligned_cols=43  Identities=16%  Similarity=0.187  Sum_probs=26.8

Q ss_pred             HhcCCHHHHHHHHHhCCCC------ChHHHHHHHHHHHhCCChhHHHHH
Q 047067          140 ARFDQMDDAWFLFTALESK------NEVSWNALIAGHARKSEGEKALRT  182 (566)
Q Consensus       140 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~  182 (566)
                      ....+.+.|+..+.+...+      --.++..+..+..+.|.+++++..
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~   65 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF   65 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence            3456777777777665543      123556666777777777776543

>PRK09687 putative lyase; Provisional

Probab=89.05  E-value=21  Score=33.89  Aligned_cols=236  Identities=8%  Similarity=-0.044  Sum_probs=112.5

Q ss_pred             CCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchH---HHHHHHHHHHHhCCCCchh
Q 047067           54 PVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDK---FGRQVHAFCLKYGYDWNVY  130 (566)
Q Consensus        54 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~---~~~~i~~~~~~~g~~~~~~  130 (566)
                      ..+|.......+.++...|. .++...+..+..   .+|...=...+.+++..++...   .+..++..+..  -+++..
T Consensus        33 ~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~  106 (280)
T PRK09687         33 DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSAC  106 (280)
T ss_pred             hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHH
Confidence            44455444445555544443 233333333332   2333333344444444444220   12222221111  144555


Q ss_pred             HHHHHHHHHHhcCCH-----HHHHHHHHh-CCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047067          131 VGSSLLDMYARFDQM-----DDAWFLFTA-LESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA  204 (566)
Q Consensus       131 ~~~~li~~y~~~g~~-----~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~  204 (566)
                      +....+.+++..+.-     ..+...+.. +..++...--..+.++.+.++ .+++..+-.+..   .+|...-...+.+
T Consensus       107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a  182 (280)
T PRK09687        107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA  182 (280)
T ss_pred             HHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence            555555555444321     122233322 233444444455556666554 456666666654   2444444444555


Q ss_pred             HhccC-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 047067          205 LASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRW  283 (566)
Q Consensus       205 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  283 (566)
                      +.+.+ ..+.+...+..++.   .++..+-...+.++.+.|+.+....+.+.+..++  ..-..+.++...|.. +|+..
T Consensus       183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~  256 (280)
T PRK09687        183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPV  256 (280)
T ss_pred             HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHH
Confidence            55442 12334444444442   4466666667777777777543333334443333  234567777777774 68888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHH
Q 047067          284 FEKMLRNGIAPNQVTFLCVLTACS  307 (566)
Q Consensus       284 ~~~m~~~g~~p~~~t~~~ll~a~~  307 (566)
                      +.++.+.  .||...-...+.+|.
T Consensus       257 L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        257 LDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHhh--CCChhHHHHHHHHHh
Confidence            8877763  346555555555543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=89.02  E-value=11  Score=30.67  Aligned_cols=65  Identities=12%  Similarity=0.116  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE  328 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  328 (566)
                      ..+.-+..+...|+-++-.+++.++.+. -.|++.....+..||.+.|+..++.+++...-+.|++
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            3444566777778877777777777653 3667777778888888888888888888666666643

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=88.76  E-value=22  Score=33.74  Aligned_cols=19  Identities=16%  Similarity=-0.104  Sum_probs=12.1

Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 047067          372 ACRMHKNVELGAYAAERIF  390 (566)
Q Consensus       372 ~~~~~g~~~~a~~~~~~~~  390 (566)
                      .+.+.++++.|...++-.+
T Consensus       255 ~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHhhcCHHHHHHHHHHHH
Confidence            3456677777777776543

It is also involved in sporulation [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.56  E-value=36  Score=36.00  Aligned_cols=273  Identities=13%  Similarity=0.068  Sum_probs=151.3

Q ss_pred             HHHHHHHHHhCCCC-ChHHHHHHHH----H-HHhCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC--
Q 047067          145 MDDAWFLFTALESK-NEVSWNALIA----G-HARKSEGEKALRTFSEMLR-------EGFEPTHFSYSSVFTALASTG--  209 (566)
Q Consensus       145 ~~~A~~~f~~~~~~-~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~ll~~~~~~~--  209 (566)
                      ...|.+.++...+. ++..-..+..    + +....+.+.|+..|+.+..       .|   +......+..+|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            45677777776654 4443333332    2 4466788999999988866       44   2234455556665533  


Q ss_pred             ---ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHH----HcCCHHHH
Q 047067          210 ---SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK-SGSIEDAEKVFNRLLKR-DVVSWNSMLTGCA----QHGLGKAT  280 (566)
Q Consensus       210 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A  280 (566)
                         +.+.|..++....+.| .|+....-..+..... ..+...|.++|...-+. .+.+.-.+...|.    ...+.+.|
T Consensus       305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence               5667888888888887 4444443333322222 24577888888877543 3333333333332    23467888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh---hh----cCCHHHHHHH
Q 047067          281 VRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL---GR----AGLLDRALKF  353 (566)
Q Consensus       281 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~---~~----~g~~~~A~~~  353 (566)
                      ..++.+.-+.| .|...--...+..+.. +.++.+.-.+..+...|.+.....-..+.+..   ..    ..+.+.+..+
T Consensus       384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~  461 (552)
T KOG1550|consen  384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL  461 (552)
T ss_pred             HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence            88888888887 4443333334444444 66666666665555555432222111122111   11    2245566666


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-C--ChhHHHHHHHHHHhC
Q 047067          354 IREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDSGPHILLANIYASA-G--RLNDAARARKMMKES  426 (566)
Q Consensus       354 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~~  426 (566)
                      +.+...+-+......|...|..    ..+.+.|...+.++.+..   ......|+.++-.. |  .+..|.++++...+.
T Consensus       462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE  538 (552)
T ss_pred             HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence            6666434445444545444332    235677777777766655   45566677666542 1  256777777777653

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=88.55  E-value=3.4  Score=34.99  Aligned_cols=48  Identities=13%  Similarity=0.079  Sum_probs=21.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          376 HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      .++.++++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+
T Consensus        23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l   70 (160)
T PF09613_consen   23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL   70 (160)
T ss_pred             cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.38  E-value=15  Score=31.49  Aligned_cols=133  Identities=10%  Similarity=0.006  Sum_probs=69.2

Q ss_pred             HHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 047067           78 IILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWN-VYVGSSLLDMYARF-DQMDDAWFLFTAL  155 (566)
Q Consensus        78 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~li~~y~~~-g~~~~A~~~f~~~  155 (566)
                      ++.++.+.+.+++|+...+..+++.+.+.+... .    ...+++.++-+| ..+...|++.-.+. .-..-|.+++.++
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~-~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS-Q----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-H----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence            344555566677777777777777777776655 2    222333343333 33333333222111 0123344444444


Q ss_pred             CCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067          156 ESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK  223 (566)
Q Consensus       156 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  223 (566)
                      .    ..+..++..+...|++-+|+++.+.....    +......++.+..+.++...-..++....+
T Consensus        89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3    23455667778888888888887665221    112223456666666665555555554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=88.37  E-value=6  Score=33.53  Aligned_cols=49  Identities=22%  Similarity=0.181  Sum_probs=22.0

Q ss_pred             HccCCHHHHHHHHHhHHhhCCCccHH-HHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          307 SHAGLLDEGQGYFALMKKHGVEPEEA-HYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      .+.++.+++..++..+...  .|... .-..-...+.+.|++.+|..+|+++
T Consensus        21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l   70 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLREL   70 (160)
T ss_pred             HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3455555555555443332  22211 1111223344556666666666555

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.27  E-value=16  Score=31.45  Aligned_cols=130  Identities=12%  Similarity=0.047  Sum_probs=62.6

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 047067          180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR  259 (566)
Q Consensus       180 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  259 (566)
                      ++.++.+...+++|+...+..+++.+.+.|.+..-.    +++..++-+|.......+-.+.  +....+.++=-+|.++
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence            345555666677777777777777777777655433    3334444333332222221111  1112222222222222


Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067          260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF  319 (566)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  319 (566)
                      =...+..++..+...|++-+|+.+.+.....    +...-..++.+-.+.++...-..++
T Consensus        88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~  143 (167)
T PF07035_consen   88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVF  143 (167)
T ss_pred             hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHH
Confidence            2223455666677777777777777664221    1112233455555555444433333

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.12  E-value=13  Score=32.49  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067          233 GNTLVDMYAKSGSIEDAEKVFNRLLKRD------VVSWNSMLTGCAQHGLGKATVRWFEKM  287 (566)
Q Consensus       233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m  287 (566)
                      +..+.+.|.+.|+.+.|.+.|.++.+..      +..+-.+|......+++..+.....+.
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3444555555555555555555543321      123334444444444555444444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=88.03  E-value=14  Score=30.67  Aligned_cols=68  Identities=15%  Similarity=0.163  Sum_probs=37.9

Q ss_pred             HHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047067          240 YAKSGSIEDAEKVFNRLLKR------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS  307 (566)
Q Consensus       240 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~  307 (566)
                      ..+.|++++|.+.|+.+..+      ...+--.++.+|.+.+++++|+..+++.++....-..+-|...+.+++
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            34556677777766666432      223444566677777777777777777766432211234444444443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.01  E-value=3.4  Score=34.36  Aligned_cols=53  Identities=13%  Similarity=0.102  Sum_probs=37.0

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ..++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            36667777777777777777777666667777777777777777777766554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK10941 hypothetical protein; Provisional

Probab=87.94  E-value=4.3  Score=38.09  Aligned_cols=63  Identities=24%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          365 VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       365 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ..+.|-.++.+.++++.|+++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...++-
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            446666789999999999999999999999999888889999999999999999888887643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=87.84  E-value=22  Score=32.69  Aligned_cols=58  Identities=16%  Similarity=0.159  Sum_probs=45.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          369 LLGACRMHKNVELGAYAAERIFELDPHDSG---PHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +..-|.+.|.+..|..-++++++--|+.+.   .+..+.++|...|..++|.+.-+-+...
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            345688899999999999999987655443   5667888999999999999887766543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.84  E-value=11  Score=32.36  Aligned_cols=50  Identities=14%  Similarity=-0.011  Sum_probs=25.0

Q ss_pred             hhcCCHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          342 GRAGLLDRALKFIREMPI--EP-TAAVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       342 ~~~g~~~~A~~~~~~~~~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      ...|.+++.....+.+..  .| ....-.+|.-+--+.|++..|...|.++..
T Consensus       143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            345555555555555511  12 122334444455556666666666666554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.46  E-value=46  Score=35.99  Aligned_cols=75  Identities=11%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCC
Q 047067          337 FVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFE-LDPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~  412 (566)
                      ++..+.+..+.+++..+.+..+ +-++..|..++..+.+.+.++.-.+...++++ +..++.-.-..+++++++.+.
T Consensus       711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~  786 (933)
T KOG2114|consen  711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT  786 (933)
T ss_pred             HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence            4555667778888888888775 33778888888888888877666665555553 222222233445555655543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.07  E-value=5.6  Score=37.38  Aligned_cols=96  Identities=19%  Similarity=0.293  Sum_probs=70.9

Q ss_pred             CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047067          225 GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-R--------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN  295 (566)
Q Consensus       225 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  295 (566)
                      |.+....+...++..-....++++++..+-++.. +        ..++|-.++.    .=++++++.++..=++.|+-||
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence            4455555666677766667788888888777642 2        2334433333    3357799999999899999999


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHH-HhHHh
Q 047067          296 QVTFLCVLTACSHAGLLDEGQGYF-ALMKK  324 (566)
Q Consensus       296 ~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~  324 (566)
                      ..|+..++..+.+.+++.+|.++. .+|.+
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999999999999888 44443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.81  E-value=11  Score=32.90  Aligned_cols=94  Identities=11%  Similarity=0.089  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHhHHhh---CCCccH----H
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ--VTFLCVLTACSHAGLLDEGQGYFALMKKH---GVEPEE----A  332 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~p~~----~  332 (566)
                      ..+..+..-|.+.|+.++|++.|.++.+....|..  ..+..++..+...+++..+..........   +-+++.    .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            35667888888889999999998888886555543  35667777788888888887776443332   222222    2


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          333 HYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      +|..|.  +...+++.+|-+.|-+.
T Consensus       117 ~~~gL~--~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGLA--NLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHH--HHHhchHHHHHHHHHcc
Confidence            233322  23467888888887666

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.51  E-value=1.8  Score=25.36  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      .|..+...|...|++++|++.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            456677777777777777777777766

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.28  E-value=1.2  Score=26.54  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=21.0

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCChhHHH
Q 047067           16 AHILGSAFKNDIAMQNTILNAYAKCGCLDEAR   47 (566)
Q Consensus        16 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~   47 (566)
                      .+.++.. +.++.+|+.|...|...|++++|+
T Consensus         3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3445543 556777777777777777777775

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.91  E-value=27  Score=31.67  Aligned_cols=60  Identities=18%  Similarity=0.289  Sum_probs=37.6

Q ss_pred             HhhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHHH--HH-hcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          340 LLGRAGLLDRALKFIREM---PIEPTAAVWGA---LLGA--CR-MHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       340 ~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~~--~~-~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      .-+..+++.+|.++|++.   .+..+..-|..   ++.+  |. -..+.-.+...+++..+++|.-..+
T Consensus       163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            345678888999998877   22333333321   2222  32 3367777888888888999975443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.87  E-value=37  Score=33.29  Aligned_cols=67  Identities=19%  Similarity=0.290  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          362 TAAVWGALLGACRMHKNVELGAYAAERIFELDP----HDSGPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      ...+|..+...+++.|+++.|...+.++.+..+    ..+.....-+......|+..+|...++...+..+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            456899999999999999999999999988652    2455667778889999999999999988877433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.55  E-value=4.3  Score=38.13  Aligned_cols=98  Identities=18%  Similarity=0.327  Sum_probs=72.3

Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 047067          124 GYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK---------NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT  194 (566)
Q Consensus       124 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd  194 (566)
                      |.+....+...++..-....+++++...+-++...         ...+|-.++.    .-++++++.++..=.+-|+-||
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence            44555556666666666677888888777665531         2334433333    3467899999888888999999


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 047067          195 HFSYSSVFTALASTGSLEQGKWVHAHVIKSG  225 (566)
Q Consensus       195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  225 (566)
                      .+|+..+++.+.+.+++..|.++...|+...
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888777654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=85.34  E-value=2.9  Score=28.00  Aligned_cols=31  Identities=13%  Similarity=0.156  Sum_probs=25.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          369 LLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      +.-++.+.|+++.|.+..+.+++++|+|..+
T Consensus         7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            4567889999999999999999999998633

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.91  E-value=50  Score=34.99  Aligned_cols=153  Identities=14%  Similarity=0.092  Sum_probs=82.7

Q ss_pred             HHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067          272 AQHGLGKATVRWFEKMLR-------NGIAPNQVTFLCVLTACSHAG-----LLDEGQGYFALMKKHGVEPEEAHYVTFVD  339 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~  339 (566)
                      ....+.+.|+.+|+.+.+       .|   +......+..+|.+..     +.+.|..++.+..+.| .|+....-..+.
T Consensus       260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~  335 (552)
T KOG1550|consen  260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY  335 (552)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            344566666666666655       44   2224445555555532     5566777776655555 334433322222


Q ss_pred             Hhhh-cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCh
Q 047067          340 LLGR-AGLLDRALKFIREMPI--EPTAAVWGALLGAC--RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA-GRL  413 (566)
Q Consensus       340 ~~~~-~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~  413 (566)
                      ..+. -.+...|.++|.....  .++...+-++....  ....+.+.|...++++-+.++.  .+...+...+.-. +++
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~  413 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVGRY  413 (552)
T ss_pred             HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHccccc
Confidence            2222 2456778888877621  22333332222211  1334778888888888887732  3334444433322 788


Q ss_pred             hHHHHHHHHHHhCCCcc
Q 047067          414 NDAARARKMMKESGVKK  430 (566)
Q Consensus       414 ~~a~~~~~~m~~~g~~~  430 (566)
                      +.+.-.+..+.+.|..-
T Consensus       414 ~~~~~~~~~~a~~g~~~  430 (552)
T KOG1550|consen  414 DTALALYLYLAELGYEV  430 (552)
T ss_pred             cHHHHHHHHHHHhhhhH
Confidence            88888877777776643

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=84.18  E-value=15  Score=28.28  Aligned_cols=87  Identities=17%  Similarity=0.144  Sum_probs=57.5

Q ss_pred             cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 047067            8 LKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRL   87 (566)
Q Consensus         8 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~   87 (566)
                      .++|-.|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-..  +.|-..++..-+.+|...
T Consensus        21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s   97 (115)
T TIGR02508        21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS   97 (115)
T ss_pred             HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence            45666666666554311 222222223456678999999999999999999999888764  556666677777777776


Q ss_pred             CCCCChhHHHH
Q 047067           88 GLKPNQFTLSS   98 (566)
Q Consensus        88 g~~p~~~t~~~   98 (566)
                      | .|...+|..
T Consensus        98 g-~p~lq~Faa  107 (115)
T TIGR02508        98 G-DPRLQTFVA  107 (115)
T ss_pred             C-CHHHHHHHH
Confidence            6 555555543

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.18  E-value=2  Score=26.63  Aligned_cols=28  Identities=29%  Similarity=0.283  Sum_probs=22.6

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          398 GPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       398 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .++..|+.+|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3677888999999999999999888865

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=84.11  E-value=3.9  Score=35.25  Aligned_cols=46  Identities=17%  Similarity=0.186  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC----hhHHHHHHHHHH
Q 047067          379 VELGAYAAERIFELDPHDSGPHILLANIYASAGR----LNDAARARKMMK  424 (566)
Q Consensus       379 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~  424 (566)
                      +++|+.-+++++.++|+...++..++++|...+.    ..+|..+|++..
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~  100 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT  100 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            4667777888888999999999999999987654    334445555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=83.94  E-value=7.6  Score=25.98  Aligned_cols=51  Identities=22%  Similarity=0.130  Sum_probs=35.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCc
Q 047067          399 PHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQIGY  475 (566)
Q Consensus       399 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~g~  475 (566)
                      ....++.++.+.|++++|.+..+.+.+..                          |...++......+.++|++.|.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e--------------------------P~N~Qa~~L~~~i~~~i~kdgl   53 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIE--------------------------PDNRQAQSLKELIEDKIQKDGL   53 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------------------------TS-HHHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhC--------------------------CCcHHHHHHHHHHHHHHhccCC
Confidence            34568889999999999999999998732                          3344455555567777777663

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.68  E-value=1.6  Score=24.09  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=18.2

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHH
Q 047067          398 GPHILLANIYASAGRLNDAARARK  421 (566)
Q Consensus       398 ~~~~~l~~~~~~~g~~~~a~~~~~  421 (566)
                      .....++.++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355677888888888888887765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=83.29  E-value=53  Score=32.96  Aligned_cols=30  Identities=10%  Similarity=0.062  Sum_probs=22.6

Q ss_pred             ChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047067          159 NEVSWNALIAGHARKSEGEKALRTFSEMLR  188 (566)
Q Consensus       159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  188 (566)
                      =+.++..++....+.++..+|-+.+.-+..
T Consensus       297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            355778888888888888888887766654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=82.97  E-value=3.4  Score=37.20  Aligned_cols=81  Identities=19%  Similarity=0.153  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067          345 GLLDRALKFIREM-PIEPTAA-VWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKM  422 (566)
Q Consensus       345 g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  422 (566)
                      .+++.|...+.+. -+.|.+. -|..=+-++.+..+++.+.+--++++++.|+....+..++........+++|+..+.+
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr  103 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR  103 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            4455555555444 5677774 4555666777788899999999999999999988999999999999999999999888


Q ss_pred             HHh
Q 047067          423 MKE  425 (566)
Q Consensus       423 m~~  425 (566)
                      ..+
T Consensus       104 a~s  106 (284)
T KOG4642|consen  104 AYS  106 (284)
T ss_pred             HHH
Confidence            854

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.47  E-value=11  Score=31.38  Aligned_cols=17  Identities=35%  Similarity=0.507  Sum_probs=9.0

Q ss_pred             hhhcCCHHHHHHHHHhC
Q 047067          341 LGRAGLLDRALKFIREM  357 (566)
Q Consensus       341 ~~~~g~~~~A~~~~~~~  357 (566)
                      +.+.|++++|..+|++.
T Consensus        54 ~i~rg~w~eA~rvlr~l   70 (153)
T TIGR02561        54 LIARGNYDEAARILREL   70 (153)
T ss_pred             HHHcCCHHHHHHHHHhh
Confidence            34555555555555555

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.04  E-value=3.2  Score=24.31  Aligned_cols=28  Identities=21%  Similarity=0.197  Sum_probs=25.3

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          398 GPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       398 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .+|..++.+|...|++++|...|++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3688899999999999999999998875

...

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=82.02  E-value=1.4e+02  Score=36.85  Aligned_cols=64  Identities=11%  Similarity=0.025  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      ..+|-.....++..|+++.|....-.+.+..+  +..+.-.+......|+...|..++++-.+...
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            36898899999999999999998888887774  35888899999999999999999999886543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.59  E-value=25  Score=36.39  Aligned_cols=45  Identities=16%  Similarity=0.150  Sum_probs=21.7

Q ss_pred             hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047067          242 KSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKML  288 (566)
Q Consensus       242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  288 (566)
                      +.|+++.|.++..+.  .+..-|..|..+..+.|++..|.+.|.+..
T Consensus       649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~  693 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR  693 (794)
T ss_pred             hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence            344455444443321  234445555555555555555555555443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=81.40  E-value=21  Score=35.26  Aligned_cols=64  Identities=14%  Similarity=0.089  Sum_probs=50.2

Q ss_pred             CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 047067          362 TAAVWGAL---LGACRMHKNVELGAYAAERIFELDPH-DSGPHILLANIYA-SAGRLNDAARARKMMKE  425 (566)
Q Consensus       362 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~  425 (566)
                      |...|.++   +....+.|-+..|.+..+-++.++|. ||..-...++.|+ ++++++--.++.+....
T Consensus        99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen   99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            34445444   46678899999999999999999999 8887778888886 77888877777776554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.38  E-value=3.8  Score=25.25  Aligned_cols=28  Identities=14%  Similarity=0.249  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      .+++.|...|...|++++|+.++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4566677777777777777777777654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=81.33  E-value=50  Score=31.31  Aligned_cols=21  Identities=10%  Similarity=-0.010  Sum_probs=16.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHH
Q 047067          404 ANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       404 ~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      +..+.+.++|++|.+.++...
T Consensus       253 ~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  253 GKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHhhcCHHHHHHHHHHHH
Confidence            445678899999999888654

It is also involved in sporulation [].

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.10  E-value=43  Score=30.42  Aligned_cols=14  Identities=29%  Similarity=0.555  Sum_probs=7.6

Q ss_pred             hcCCHHHHHHHHHh
Q 047067          242 KSGSIEDAEKVFNR  255 (566)
Q Consensus       242 ~~g~~~~A~~~~~~  255 (566)
                      -.+++++|.++|.+
T Consensus        26 g~~k~eeAadl~~~   39 (288)
T KOG1586|consen   26 GSNKYEEAAELYER   39 (288)
T ss_pred             CCcchHHHHHHHHH
Confidence            33456666666554

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=80.78  E-value=24  Score=27.20  Aligned_cols=84  Identities=15%  Similarity=0.105  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047067          112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGF  191 (566)
Q Consensus       112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  191 (566)
                      ++..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-++-.  .+.|..+++..-+.+|...| 
T Consensus        23 EA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-   98 (115)
T TIGR02508        23 EANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-   98 (115)
T ss_pred             HHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-
Confidence            344444444433311 33333344556778899999999999988899999888765  46677777777777777766 


Q ss_pred             CCCHHHHH
Q 047067          192 EPTHFSYS  199 (566)
Q Consensus       192 ~pd~~t~~  199 (566)
                      .|...+|.
T Consensus        99 ~p~lq~Fa  106 (115)
T TIGR02508        99 DPRLQTFV  106 (115)
T ss_pred             CHHHHHHH
Confidence            45544443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.72  E-value=0.76  Score=38.56  Aligned_cols=83  Identities=18%  Similarity=0.220  Sum_probs=43.6

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH
Q 047067          201 VFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKAT  280 (566)
Q Consensus       201 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  280 (566)
                      +++.+.+.+.++....+++.+.+.+...+..+.+.++..|++.++.++..++++....   .-...++..+.+.|.+++|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            3445555666666666666666655555666677777777777655555555552211   2223344444444444444


Q ss_pred             HHHHHH
Q 047067          281 VRWFEK  286 (566)
Q Consensus       281 ~~~~~~  286 (566)
                      .-++.+
T Consensus        90 ~~Ly~~   95 (143)
T PF00637_consen   90 VYLYSK   95 (143)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            444433

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>smart00028 TPR Tetratricopeptide repeats

Probab=80.55  E-value=3.8  Score=22.81  Aligned_cols=29  Identities=24%  Similarity=0.127  Sum_probs=14.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067          366 WGALLGACRMHKNVELGAYAAERIFELDP  394 (566)
Q Consensus       366 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  394 (566)
                      |..+...+...|+++.|...+++.++..|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            34444445555555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=80.50  E-value=15  Score=27.99  Aligned_cols=63  Identities=13%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067          276 LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD  339 (566)
Q Consensus       276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  339 (566)
                      +.-++.+-++.+....+.|++....+.++||.+.+++..|..+|+-++.. ...+...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence            44466777777777788899999999999999999999999999765532 2224446666553

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.23  E-value=6.6  Score=36.54  Aligned_cols=59  Identities=19%  Similarity=0.113  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          367 GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       367 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      +-....|...|.+.+|.++.+++++++|-+...+..|.+.|+..|+--++.+-++++.+
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            34446789999999999999999999999999999999999999998888888888754

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=80.11  E-value=1.6e+02  Score=36.36  Aligned_cols=354  Identities=14%  Similarity=0.053  Sum_probs=163.6

Q ss_pred             HHHHHHHhcCChhHHHHHHccC----CCCCc--chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHcc
Q 047067           32 TILNAYAKCGCLDEARKLFDEM----PVKDM--VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGA  105 (566)
Q Consensus        32 ~li~~~~~~g~~~~A~~~f~~~----~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~  105 (566)
                      .|..+--+|+.+..|.-.|+.-    .+.+.  .-|..+...|+.-++++....+...-..   .|+   +..-|.-...
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence            3444555677777777777762    21111  1233344467777777766665553111   122   2222333345


Q ss_pred             CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHH-HHHHHhCCChhHHHH
Q 047067          106 GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESK---NEVSWNAL-IAGHARKSEGEKALR  181 (566)
Q Consensus       106 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~l-i~~~~~~g~~~~A~~  181 (566)
                      .|++. .+...++.+.+.+ ++....++.++..-...|.++......+.....   ....|+++ +.+-.+.++++....
T Consensus      1462 ~g~~~-da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWA-DAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred             hccHH-HHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence            56666 6666666666553 222444554444444455666665555544432   22233332 233355666665554


Q ss_pred             HHHHHHHCCCCCCHHHHHH--HHHHHhccCChHH--HHHHHHHH--------HHhCCC-CcHhHHHHHHHHHHhcCCHHH
Q 047067          182 TFSEMLREGFEPTHFSYSS--VFTALASTGSLEQ--GKWVHAHV--------IKSGGQ-LVAFVGNTLVDMYAKSGSIED  248 (566)
Q Consensus       182 ~~~~m~~~g~~pd~~t~~~--ll~~~~~~~~~~~--a~~~~~~~--------~~~~~~-~~~~~~~~li~~~~~~g~~~~  248 (566)
                      ...  ..     +..+|..  +.....+...-+.  -....+.+        ...+.. .-...|..++....-+.- +.
T Consensus      1540 ~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~ 1611 (2382)
T KOG0890|consen 1540 YLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-EN 1611 (2382)
T ss_pred             hhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HH
Confidence            433  11     1111111  1111111111000  00111111        111111 112344445444433322 22


Q ss_pred             HHHHHHhcCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCC-----HHHHHHHHHHHHccCCHHHHHH
Q 047067          249 AEKVFNRLLKR-----DVVSWNSMLTGCAQHGLGKATVRWFEKM-LRNGIAPN-----QVTFLCVLTACSHAGLLDEGQG  317 (566)
Q Consensus       249 A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~  317 (566)
                      ..+........     +..-|-.-+.--....+..+-+-.+++. ......|+     ..+|....+.+...|.++.|..
T Consensus      1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred             HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence            22222222111     2223433333222222222322223322 22212222     4578888888888999999998


Q ss_pred             HHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----------CCCCCHHHHHHHHHH--------H---Hhc
Q 047067          318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----------PIEPTAAVWGALLGA--------C---RMH  376 (566)
Q Consensus       318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~~~~~~~ll~~--------~---~~~  376 (566)
                      .+-...+.+ .|  ..+--....+...|+...|+.++++.          +.++.+..-|.++..        |   ..+
T Consensus      1692 all~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n 1768 (2382)
T KOG0890|consen 1692 ALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN 1768 (2382)
T ss_pred             HHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc
Confidence            883334333 33  34556677888999999999988765          112223333333322        1   122


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          377 KNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      -..+..++.|..+.+..|.....|..++
T Consensus      1769 ~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1769 FESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred             hhHHHHHHHHHHHHHHcccccCceeeHH
Confidence            3345667888888888886555555555

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=80.09  E-value=3.2  Score=23.99  Aligned_cols=23  Identities=9%  Similarity=0.021  Sum_probs=10.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCC
Q 047067          372 ACRMHKNVELGAYAAERIFELDP  394 (566)
Q Consensus       372 ~~~~~g~~~~a~~~~~~~~~~~p  394 (566)
                      ++...|+.++|.+.++++++..|
T Consensus         9 ~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    9 CYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHccCHHHHHHHHHHHHHHCc
Confidence            33344444444444444444444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=80.04  E-value=2.7  Score=24.34  Aligned_cols=28  Identities=18%  Similarity=0.179  Sum_probs=24.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          399 PHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       399 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ++..++.+|.+.|++++|.+.++++.+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4667899999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	566
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 62.9 bits (151), Expect = 2e-10
 Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 8/189 (4%)

Query: 156 ESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGK 215
           ES  E     L+     K   +       +  +           + F     T  L    
Sbjct: 88  ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147

Query: 216 WV---HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL----LKRDVVSWNSML 268
            +   H    +    L   + N ++  +A+ G+ ++   V   +    L  D++S+ + L
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207

Query: 269 TGCAQHGLGKATV-RWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV 327
               +      T+ R  E+M + G+    +    +L+    A +L               
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267

Query: 328 EPEEAHYVT 336
            P   +   
Sbjct: 268 LPPPVNTSK 276

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 57.1 bits (136), Expect = 1e-08
 Identities = 28/287 (9%), Positives = 77/287 (26%), Gaps = 13/287 (4%)

Query: 236 LVDMYAKSGSIEDAEKVFNRLLKR----DVVSWNSMLTGCAQHG-LGKA--TVRWFEKML 288
           L+       S++  +    +  +           +    C     L  A   +       
Sbjct: 98  LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157

Query: 289 RNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLD 348
           +         +  V+   +  G   E      ++K  G+ P+   Y   +  +GR     
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217

Query: 349 RAL-KFIREMPIE-PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI 406
             + + + +M  E          +      +   L A    +     P    P +  + +
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277

Query: 407 YASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREI 466
                  +      K+       +      +  + A  + V + +     +   K  R+ 
Sbjct: 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKT 337

Query: 467 SEKIKQIGYVPDSSHVLSYADQQEREAKLQVHSEKLALAFALISTPP 513
            + ++          +     + +   + +V+  + +L   L     
Sbjct: 338 LKTLRDQWE----KALCRALRETKNRLEREVYEGRFSLYPFLCLLDE 380

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 54.4 bits (129), Expect = 7e-08
 Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 7/129 (5%)

Query: 31  NTILNAYAKCGCLDEARKLFDEM-------PVKDMVTWTALISGYSQNDQPENAIILFSQ 83
                       L  A  L            +  +  + A++ G+++    +  + +   
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190

Query: 84  MLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD 143
           +   GL P+  + ++ L+  G    D     +      + G        + LL    R  
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250

Query: 144 QMDDAWFLF 152
            +     + 
Sbjct: 251 VLKAVHKVK 259

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 51.0 bits (120), Expect = 9e-07
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 8/153 (5%)

Query: 2   CTHLKKLKEARIVHAHILGSAFKN---DIAMQNTILNAYAKCGCLDEARKLFDEMPVK-- 56
           C    +L  A  +     G   K     + M N ++  +A+ G   E   +   +     
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196

Query: 57  --DMVTWTALISGYSQNDQPENAI-ILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFG 113
             D++++ A +    + DQ    I     QM + GLK      + +L             
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256

Query: 114 RQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMD 146
           +    F L       V     L D+YA+  ++ 
Sbjct: 257 KVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 49.4 bits (116), Expect = 3e-06
 Identities = 24/182 (13%), Positives = 55/182 (30%), Gaps = 9/182 (4%)

Query: 80  LFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMY 139
           L     +    P +  L+ +L+ +  G       +       +           +     
Sbjct: 79  LEDCTRQAPESPWEEQLARLLQEA-PGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137

Query: 140 ARFDQMDDAWFLFTALESKNE-------VSWNALIAGHARKSEGEKALRTFSEMLREGFE 192
              DQ+  A  L      + +         +NA++ G AR+   ++ +     +   G  
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197

Query: 193 PTHFSYSSVFTALASTGSLEQGKW-VHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEK 251
           P   SY++    +                + + G +L A     L+    ++  ++   K
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257

Query: 252 VF 253
           V 
Sbjct: 258 VK 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 51/370 (13%), Positives = 109/370 (29%), Gaps = 131/370 (35%)

Query: 1   KCTHLK--KL-KEARIVH---AHILGSAFKNDIA------------MQNTILNAYAKCGC 42
           K    +   L +E    +     I+  + ++ +A            +   I ++      
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN---V 365

Query: 43  LD--EARKLFDEMPV--KDM-VTWTALISGYSQNDQPENAIILFSQMLRLGL-----KPN 92
           L+  E RK+FD + V      +  T L+S    +    + +++ +++ +  L     K +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 93  QFTLSSVLKASGAGATDDKFGRQVHAFCL-KY----GYDWNVYVGSSLLDMYARFDQMDD 147
             ++ S+         ++     +H   +  Y     +D +  +    LD Y        
Sbjct: 425 TISIPSIYLELKVKLENEY---ALHRSIVDHYNIPKTFDSD-DLIPPYLDQY-------- 472

Query: 148 AWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS 207
            ++                I  H +  E  + +  F                 VF     
Sbjct: 473 -FYSH--------------IGHHLKNIEHPERMTLFRM---------------VFLDF-- 500

Query: 208 TGSLEQGKWVHAHVIKSGGQLVAF--VGNTLVDM--YAKSGSIEDAEKVFNRLLKRDVVS 263
                  +++   +        A   + NTL  +  Y     I D +  + RL+   ++ 
Sbjct: 501 -------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVN-AILD 550

Query: 264 WNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMK 323
           +   L    ++                            L    +  LL   +   ALM 
Sbjct: 551 F---LPKIEEN----------------------------LICSKYTDLL---R--IALMA 574

Query: 324 KHGVEPEEAH 333
           +     EEAH
Sbjct: 575 EDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 70/495 (14%), Positives = 128/495 (25%), Gaps = 128/495 (25%)

Query: 3   THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWT 62
             L +L+ A+ V    +  + K       T +       CL    K+  +M  K  + W 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGK-------TWVALDV---CLSY--KVQCKMDFK--IFWL 187

Query: 63  ALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKA------SGAGATDDKFGRQV 116
            L       + PE  ++   Q L   + PN  + S           S           + 
Sbjct: 188 NL----KNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 117 HAFCL------KYGYDWNVY--------------VGSSLLDMYARFDQMDDAWFLFTALE 156
           +  CL      +    WN +              V   L         +D      T  E
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 157 SKNEVSWNALIAGHARKSEGEKALRT-------FSEMLREGFEPTHFSYSSVFTALASTG 209
            K+ +           +    + L T        +E +R+G     +             
Sbjct: 303 VKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG--LATWDN----------- 346

Query: 210 SLEQGKWVHAHVIKSG-------------GQLVAFVGNTLV-----DMYAKSGSIEDAEK 251
                      +I+S               +L  F  +  +      +        D   
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 252 VFNRLLKRDVV-SWNSMLTGCAQHGL---GKATVRWFEKMLRNGIAPNQVTFLCVLTACS 307
           V N+L K  +V       T  +   +    K  +   E  L   I  +           S
Sbjct: 407 VVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLE-NEYALHRSIV-DHYNIPKTF--DS 461

Query: 308 HAGLLDEGQGYFAL-MKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVW 366
              +      YF   +  H    E    +T   ++     LD   +F+ E  I   +  W
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----FLD--FRFL-EQKIRHDSTAW 514

Query: 367 GALLGACRMHKNVELGAYAAERIFELDPHDS-------------GPHIL---------LA 404
            A        + ++   Y    I + DP                  +++         +A
Sbjct: 515 NASGSILNTLQQLKF--Y-KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

Query: 405 NIYASAGRLNDAARA 419
            +        +A + 
Sbjct: 572 LMAEDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	566
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.8
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.74
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.74
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.73
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.7
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.69
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.59
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.58
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.56
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.56
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.55
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.54
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.54
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.52
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.51
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.51
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.49
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.49
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.48
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.45
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.42
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.41
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.41
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.41
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.37
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.37
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.37
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.33
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.32
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.32
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.32
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.26
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.24
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.24
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.18
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.17
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.12
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.07
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.0
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.0
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.99
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.98
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.98
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.97
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.96
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.96
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.94
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.94
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.88
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.85
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.84
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.82
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.81
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.8
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.8
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.78
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.76
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.75
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.75
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.74
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.72
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.7
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.66
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.65
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.64
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.61
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.59
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.56
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.55
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.52
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.51
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.5
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.48
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.46
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.46
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.45
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.45
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.43
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.43
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.42
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.42
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.4
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.39
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.38
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.38
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.38
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.37
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.36
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.35
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.35
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.35
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.35
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.33
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.28
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.27
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.25
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.19
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.18
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.16
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.16
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.15
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.14
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.12
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.12
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.05
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.01
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.0
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.99
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.96
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.96
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.95
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.92
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.88
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.86
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.86
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.84
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.72
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.65
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.61
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.56
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.51
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.48
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.39
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.35
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.19
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.12
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.05
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.94
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.94
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.9
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.84
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.77
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.67
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.57
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.51
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.33
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.31
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.23
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.1
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.07
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.88
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.83
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.7
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.63
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.05
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.31
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.25
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.03
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.26
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.35
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	90.28
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.25
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.21
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	90.04
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.79
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	88.09
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.76
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.45
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	85.26
2p58_C	116	Putative type III secretion protein YSCG; type III	84.82
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.7
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	84.55
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.14
2p58_C	116	Putative type III secretion protein YSCG; type III	84.08
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	83.25
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	83.17
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	82.48
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	81.79
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	81.37
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	80.47

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-38  Score=336.92  Aligned_cols=416  Identities=12%  Similarity=0.015  Sum_probs=369.2

Q ss_pred             CCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccC--CCCCcchHHHHHHHHHhCCCccHHHHH
Q 047067            3 THLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEM--PVKDMVTWTALISGYSQNDQPENAIIL   80 (566)
Q Consensus         3 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l   80 (566)
                      .+.|++++|..++..+++.  .|+..++..++..|.+.|++++|..+|+.+  ..+++.+|+.++.+|.+.|++++|+++
T Consensus        95 ~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  172 (597)
T 2xpi_A           95 LMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNL  172 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHH
Confidence            4568899999999999864  567788999999999999999999999998  477899999999999999999999999


Q ss_pred             HHHHHH-C--------------CCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhH--------------
Q 047067           81 FSQMLR-L--------------GLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYV--------------  131 (566)
Q Consensus        81 ~~~m~~-~--------------g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~--------------  131 (566)
                      |+++.. .              |.+++..+|+.+..++.+.|+.+ .+..++..+.+.+.. +...              
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~  250 (597)
T 2xpi_A          173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD-RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADE  250 (597)
T ss_dssp             HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHH
T ss_pred             HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchh
Confidence            985322 1              23345789999999999999999 999999999887522 2222              


Q ss_pred             ------------------------HHHHHHHHHhcCCHHHHHHHHHhCCC--CChHHHHHHHHHHHhCCChhHHHHHHHH
Q 047067          132 ------------------------GSSLLDMYARFDQMDDAWFLFTALES--KNEVSWNALIAGHARKSEGEKALRTFSE  185 (566)
Q Consensus       132 ------------------------~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~  185 (566)
                                              ++.++.+|.+.|++++|.++|+++.+  ++..+|+.++.+|.+.|++++|+++|++
T Consensus       251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  330 (597)
T 2xpi_A          251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK  330 (597)
T ss_dssp             HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence                                    33346677889999999999999988  7999999999999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChh
Q 047067          186 MLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVV  262 (566)
Q Consensus       186 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~  262 (566)
                      |.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.   ..+..
T Consensus       331 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  408 (597)
T 2xpi_A          331 ILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP  408 (597)
T ss_dssp             HHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence            99865 3477889999999999999999999999999765 6678899999999999999999999999874   45788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG  342 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  342 (566)
                      +|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.
T Consensus       409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          409 AWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            99999999999999999999999999863 3478999999999999999999999997777654 447889999999999


Q ss_pred             hcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 047067          343 RAGLLDRALKFIREM-------PIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL  413 (566)
Q Consensus       343 ~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  413 (566)
                      +.|++++|.++|+++       +..|+  ..+|..++.+|...|++++|++.++++++.+|+++.+|..++.+|.+.|++
T Consensus       487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  566 (597)
T 2xpi_A          487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP  566 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred             HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            999999999999988       45787  789999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhC
Q 047067          414 NDAARARKMMKES  426 (566)
Q Consensus       414 ~~a~~~~~~m~~~  426 (566)
                      ++|.+.++++.+.
T Consensus       567 ~~A~~~~~~~l~~  579 (597)
T 2xpi_A          567 GLAITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-35  Score=316.33  Aligned_cols=398  Identities=9%  Similarity=-0.014  Sum_probs=348.0

Q ss_pred             CCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC-------------------CcchHH
Q 047067            2 CTHLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMPVK-------------------DMVTWT   62 (566)
Q Consensus         2 c~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~   62 (566)
                      |.+.|++++|..+|..++..  ++++.+++.++.+|.++|++++|+++|+++.+.                   ++.+|+
T Consensus       127 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (597)
T 2xpi_A          127 YCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY  204 (597)
T ss_dssp             HHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHH
Confidence            44678999999999988653  688999999999999999999999999965433                   478999


Q ss_pred             HHHHHHHhCCCccHHHHHHHHHHHCCCCCChh-HHHHH--------------------------------------HHHH
Q 047067           63 ALISGYSQNDQPENAIILFSQMLRLGLKPNQF-TLSSV--------------------------------------LKAS  103 (566)
Q Consensus        63 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l--------------------------------------l~a~  103 (566)
                      .++.+|.+.|++++|+++|++|.+.+  |+.. .+..+                                      +..|
T Consensus       205 ~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  282 (597)
T 2xpi_A          205 LRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT  282 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999853  4432 22222                                      3344


Q ss_pred             ccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHH
Q 047067          104 GAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKAL  180 (566)
Q Consensus       104 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~  180 (566)
                      .+.|+.+ .+..++..+.+.  +++..+++.++.+|.+.|++++|.++|+++.+   .+..+|+.++.+|.+.|++++|.
T Consensus       283 ~~~g~~~-~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  359 (597)
T 2xpi_A          283 SHEDELR-RAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY  359 (597)
T ss_dssp             TTHHHHH-HHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred             cCcchHH-HHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence            5566677 788888877765  58999999999999999999999999999863   47889999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 047067          181 RTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---  257 (566)
Q Consensus       181 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---  257 (566)
                      ++|+++.... +.+..++..++..+.+.|++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++.   
T Consensus       360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999998653 5578899999999999999999999999999875 5578899999999999999999999999873   


Q ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhh----CCCcc--H
Q 047067          258 KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH----GVEPE--E  331 (566)
Q Consensus       258 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~p~--~  331 (566)
                      ..+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++..|.+.|++++|.++|+.+.+.    +..|+  .
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~  516 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA  516 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence            3478999999999999999999999999999863 347899999999999999999999999777665    66787  7


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067          332 AHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS  409 (566)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  409 (566)
                      .+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|.+.++++++++|+++.++..++++|..
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            89999999999999999999999988 3345 789999999999999999999999999999999999999999888753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=5e-29  Score=255.36  Aligned_cols=182  Identities=12%  Similarity=0.131  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCcHhH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS---------LEQGKWVHAHVIKSGGQLVAFV  232 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~  232 (566)
                      .++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+.         ++.|.++|++|.+.|+.||..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            4666677777777777777777777777777777777777777765543         4667777777777777777777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067          233 GNTLVDMYAKSGSIEDAEKVFNRLL----KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH  308 (566)
Q Consensus       233 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  308 (566)
                      |++||.+|++.|++++|.++|++|.    .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            7777777777777777777777773    457777777777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh
Q 047067          309 AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR  343 (566)
Q Consensus       309 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  343 (566)
                      .|++++|.++++.|.+.+..|+..+|+.++..|..
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            77777777777777777777777777777776654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=4.5e-26  Score=228.63  Aligned_cols=343  Identities=10%  Similarity=0.033  Sum_probs=221.9

Q ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047067           61 WTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYA  140 (566)
Q Consensus        61 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~  140 (566)
                      +..+...+.+.|++++|...++...+.. +.+..+|..+..++...|+.+ .+...+..+.+.. +.+...+..+...|.
T Consensus        36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~l~~~~~  112 (388)
T 1w3b_A           36 LLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ-EAIEHYRHALRLK-PDFIDGYINLAAALV  112 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH-HHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence            3333334444444444444444433321 223333444444444444444 4444444443332 223334555556666


Q ss_pred             hcCCHHHHHHHHHhCCC--C-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047067          141 RFDQMDDAWFLFTALES--K-NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV  217 (566)
Q Consensus       141 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~  217 (566)
                      +.|++++|.+.|+++.+  | +...|..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...
T Consensus       113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~  191 (388)
T 1w3b_A          113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH  191 (388)
T ss_dssp             HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            66666666666655442  2 34455666666666666667766666666542 22345666666666677777777777


Q ss_pred             HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047067          218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP  294 (566)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  294 (566)
                      ++++++.. +.+...+..+...+...|++++|...|++..   ..+..+|+.+...|...|++++|+..|+++.+.  .|
T Consensus       192 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p  268 (388)
T 1w3b_A          192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QP  268 (388)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CS
T ss_pred             HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Confidence            77766654 3445566677777777777777777777652   335677777888888888888888888888774  33


Q ss_pred             -CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047067          295 -NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLG  371 (566)
Q Consensus       295 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~  371 (566)
                       +..++..+..++.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+..
T Consensus       269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  347 (388)
T 1w3b_A          269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence             45677788888888888888888886665543 456777888888888888888888888877 4445 4578888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067          372 ACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG  411 (566)
Q Consensus       372 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  411 (566)
                      ++...|++++|...++++++++|+++.++..++.+|...|
T Consensus       348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            8888888888888888888888888888888888877665

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=4.4e-25  Score=221.40  Aligned_cols=353  Identities=17%  Similarity=0.114  Sum_probs=306.8

Q ss_pred             HHHHHHhCCCccHHHHHHHHHHHCCCCCChh-HHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 047067           64 LISGYSQNDQPENAIILFSQMLRLGLKPNQF-TLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARF  142 (566)
Q Consensus        64 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~  142 (566)
                      +...+.+.|++++|++.|.++.+.  .|+.. .+..+...+...++.+ .+...+...++.. +.+..++..+...|.+.
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~-~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~   80 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLD-RSAHFSTLAIKQN-PLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence            345677889999999999998875  45544 4555556677888888 8888888888764 56788999999999999


Q ss_pred             CCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 047067          143 DQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGSLEQGKWVH  218 (566)
Q Consensus       143 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~  218 (566)
                      |++++|...|+++.+   .+..+|..+..++.+.|++++|++.|+++.+.  .|+ ...+..+...+...|++++|...+
T Consensus        81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (388)
T 1w3b_A           81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999998753   35678999999999999999999999999885  354 456677788889999999999999


Q ss_pred             HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 047067          219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-  294 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-  294 (566)
                      .++++.. +.+..++..+...|.+.|++++|...|+++.   ..+...|..+...+...|++++|+..|++....  .| 
T Consensus       159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~  235 (388)
T 1w3b_A          159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPN  235 (388)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcC
Confidence            9999886 5567889999999999999999999999984   346778999999999999999999999999885  45 


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 047067          295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAAVWGALLGA  372 (566)
Q Consensus       295 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~  372 (566)
                      +..++..+..++...|++++|...|+.+.+.. +.+...|..+...|.+.|++++|.+.++++ .. .++..+|..+...
T Consensus       236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  314 (388)
T 1w3b_A          236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            57889999999999999999999997776643 335678999999999999999999999988 22 3477899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       373 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +...|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999863

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2.1e-27  Score=243.33  Aligned_cols=200  Identities=11%  Similarity=0.120  Sum_probs=173.5

Q ss_pred             hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC---------H
Q 047067          177 EKALRTFSEMLREGFEPTH-FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGS---------I  246 (566)
Q Consensus       177 ~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~  246 (566)
                      ..+..+.+++.+.++.+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            3455666778777766544 46888999999999999999999999999999999999999999998765         7


Q ss_pred             HHHHHHHHhc----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhH
Q 047067          247 EDAEKVFNRL----LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALM  322 (566)
Q Consensus       247 ~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~  322 (566)
                      ++|.++|++|    ..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            8999999999    468999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 047067          323 KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM---PIEPTAAVWGALLGACRMH  376 (566)
Q Consensus       323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~  376 (566)
                      .+.|+.||..+|++||++|++.|++++|.+++++|   +..|+..||+.++..+...
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999   7899999999999988754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.7e-22  Score=208.69  Aligned_cols=394  Identities=13%  Similarity=-0.003  Sum_probs=318.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc
Q 047067           27 IAMQNTILNAYAKCGCLDEARKLFDEMP--VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG  104 (566)
Q Consensus        27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  104 (566)
                      ...+..+...|.+.|++++|...|+++.  .||...|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            3456677888999999999999999876  5788899999999999999999999999998864 344568888999999


Q ss_pred             cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH-------------------------------
Q 047067          105 AGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFT-------------------------------  153 (566)
Q Consensus       105 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~-------------------------------  153 (566)
                      ..|+.+ .+...+..+.+.+ +++......++..+.+......+.+.+.                               
T Consensus        85 ~~g~~~-~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           85 GLGKFA-DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HTTCHH-HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHhhHH-HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999 9999999998876 3344444444444444332222222221                               


Q ss_pred             -------hCC----------CCChHHHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCCC--------CCHHHHHH
Q 047067          154 -------ALE----------SKNEVSWNALIAGHAR---KSEGEKALRTFSEMLR-----EGFE--------PTHFSYSS  200 (566)
Q Consensus       154 -------~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------pd~~t~~~  200 (566)
                             ...          ..+...|......+..   .|++++|+..|+++..     ..-.        .+..++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                   110          0124455555555554   8999999999999987     3112        23457778


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCH
Q 047067          201 VFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLG  277 (566)
Q Consensus       201 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~  277 (566)
                      +...+...|++++|...+..+++....  ..++..+..+|...|++++|...|+++..   .+..+|..+...|...|++
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  320 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY  320 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence            888999999999999999999998744  88889999999999999999999998743   4678899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          278 KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       278 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      ++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...++++
T Consensus       321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999853 2356788899999999999999999997666543 335678889999999999999999999887


Q ss_pred             ----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          358 ----PIEPT----AAVWGALLGACRM---HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       358 ----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                          +-.|+    ...|..+...+..   .|++++|...++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence                22333    4488999999999   999999999999999999999999999999999999999999999999874


Q ss_pred             C
Q 047067          427 G  427 (566)
Q Consensus       427 g  427 (566)
                      .
T Consensus       479 ~  479 (514)
T 2gw1_A          479 A  479 (514)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.3e-22  Score=209.17  Aligned_cols=392  Identities=12%  Similarity=-0.019  Sum_probs=310.8

Q ss_pred             CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHH
Q 047067            4 HLKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIIL   80 (566)
Q Consensus         4 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l   80 (566)
                      +.|++++|...+..+++..  |++.++..+...|.+.|++++|...|+++.   +.+...|..+..+|.+.|++++|+..
T Consensus        18 ~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   95 (514)
T 2gw1_A           18 RNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD   95 (514)
T ss_dssp             HTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            5689999999999999986  689999999999999999999999999765   44667899999999999999999999


Q ss_pred             HHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHH-----------------------------------HHHHHhCC
Q 047067           81 FSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVH-----------------------------------AFCLKYGY  125 (566)
Q Consensus        81 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~-----------------------------------~~~~~~g~  125 (566)
                      |+++.+.+ +++......++..+....... .....+                                   ..+.....
T Consensus        96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (514)
T 2gw1_A           96 LSVLSLNG-DFNDASIEPMLERNLNKQAMS-KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP  173 (514)
T ss_dssp             HHHHHHSS-SCCGGGTHHHHHHHHHHHHHH-HHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred             HHHHHhcC-CCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence            99999875 344444444443332111100 000000                                   00000000


Q ss_pred             ---------CCchhHHHHHHHHHHh---cCCHHHHHHHHHhCCC----------------C-ChHHHHHHHHHHHhCCCh
Q 047067          126 ---------DWNVYVGSSLLDMYAR---FDQMDDAWFLFTALES----------------K-NEVSWNALIAGHARKSEG  176 (566)
Q Consensus       126 ---------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~  176 (566)
                               +.+...+..+...+..   .|++++|...|+++.+                + +..+|..+...+...|++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (514)
T 2gw1_A          174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP  253 (514)
T ss_dssp             CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence                     1124444445554554   8999999999988654                1 356888999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 047067          177 EKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL  256 (566)
Q Consensus       177 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  256 (566)
                      ++|+..|+++....  |+..++..+...+...|++++|...+..+++.. +.+..++..+..+|...|++++|...|+++
T Consensus       254 ~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  330 (514)
T 2gw1_A          254 LGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA  330 (514)
T ss_dssp             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999998864  448888899999999999999999999998875 456778899999999999999999999987


Q ss_pred             C---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-Ccc--
Q 047067          257 L---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPE--  330 (566)
Q Consensus       257 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~--  330 (566)
                      .   ..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+..... .++  
T Consensus       331 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  409 (514)
T 2gw1_A          331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY  409 (514)
T ss_dssp             HHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred             HHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence            3   3467889999999999999999999999998853 33567888999999999999999999965554321 222  


Q ss_pred             --HHHHHHHHHHhhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067          331 --EAHYVTFVDLLGR---AGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILL  403 (566)
Q Consensus       331 --~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  403 (566)
                        ...+..+...|.+   .|++++|...++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+..+
T Consensus       410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence              3478889999999   99999999999987 3344 567889999999999999999999999999999987766655

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=1.3e-21  Score=199.96  Aligned_cols=315  Identities=11%  Similarity=0.012  Sum_probs=146.4

Q ss_pred             chHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047067           59 VTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDM  138 (566)
Q Consensus        59 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~  138 (566)
                      ..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+.+ .+...+..+++.+ +.+..++..+..+
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~l~~~  103 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSK-AALPDLTKVIQLK-MDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence            344444444444555555555554444321 112233333333333333333 3333333333322 2233445555556


Q ss_pred             HHhcCCHHHHHHHHHhCCCC---Ch---HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 047067          139 YARFDQMDDAWFLFTALESK---NE---VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLE  212 (566)
Q Consensus       139 y~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~  212 (566)
                      |.+.|++++|.+.|+++.+.   +.   ..|..++..+...                       .+..+...+...|+++
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~~  160 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDYT  160 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCHH
Confidence            66666666666666655432   22   4444443321000                       0111122233344444


Q ss_pred             HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          213 QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       213 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      +|...+..+++.. +.+..++..+..+|.+.|++++|.+.|+++.   ..+..+|+.+...|...|++++|+..|+++.+
T Consensus       161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  239 (450)
T 2y4t_A          161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK  239 (450)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444444444432 2334444444455555555555555554442   22444555555555555555555555555554


Q ss_pred             cCCCCCH-HHHHHH------------HHHHHccCCHHHHHHHHHhHHhhCCCcc-----HHHHHHHHHHhhhcCCHHHHH
Q 047067          290 NGIAPNQ-VTFLCV------------LTACSHAGLLDEGQGYFALMKKHGVEPE-----EAHYVTFVDLLGRAGLLDRAL  351 (566)
Q Consensus       290 ~g~~p~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~  351 (566)
                      .  .|+. ..+..+            ..+|.+.|++++|...|..+....  |+     ..+|..+..++.+.|++++|.
T Consensus       240 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~  315 (450)
T 2y4t_A          240 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAI  315 (450)
T ss_dssp             H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            2  2322 222222            455555566666666664443322  22     235555566666666666666


Q ss_pred             HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          352 KFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       352 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      ..++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++..++
T Consensus       316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            666554 2233 4456666666666666666666666666666666655555555

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=1.3e-21  Score=200.18  Aligned_cols=297  Identities=13%  Similarity=0.066  Sum_probs=246.9

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047067          126 DWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVF  202 (566)
Q Consensus       126 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll  202 (566)
                      +.+...+..+...|.+.|++++|..+|+++.+   .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+.
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  101 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG  101 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            44667788888888888888888888887653   467788888888888888888888888888754 33567788888


Q ss_pred             HHHhccCChHHHHHHHHHHHHhCCCCcH---hHHHHH------------HHHHHhcCCHHHHHHHHHhcC---CCChhHH
Q 047067          203 TALASTGSLEQGKWVHAHVIKSGGQLVA---FVGNTL------------VDMYAKSGSIEDAEKVFNRLL---KRDVVSW  264 (566)
Q Consensus       203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~~~~~~  264 (566)
                      .++...|++++|...++.+.+.. +.+.   ..+..+            ...|.+.|++++|...|+++.   ..+..+|
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  180 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR  180 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            88888888888888888888764 2333   444444            445999999999999999874   4578899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHH-------
Q 047067          265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTF-------  337 (566)
Q Consensus       265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-------  337 (566)
                      ..++..|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+.+.... +.+...+..+       
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~  258 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN  258 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence            999999999999999999999998853 3468899999999999999999999997766543 2234444444       


Q ss_pred             -----HHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067          338 -----VDLLGRAGLLDRALKFIREM-PIEPT-----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI  406 (566)
Q Consensus       338 -----i~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  406 (566)
                           ...+.+.|++++|...|+++ ...|+     ...|..+..++...|++++|+..+++++++.|+++.++..++.+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  338 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA  338 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence                 78999999999999999988 34454     45788889999999999999999999999999999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHhC
Q 047067          407 YASAGRLNDAARARKMMKES  426 (566)
Q Consensus       407 ~~~~g~~~~a~~~~~~m~~~  426 (566)
                      |...|++++|...++++.+.
T Consensus       339 ~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          339 YLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            99999999999999999874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=7.3e-21  Score=199.09  Aligned_cols=410  Identities=11%  Similarity=0.001  Sum_probs=270.4

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067            5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILF   81 (566)
Q Consensus         5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~   81 (566)
                      .|++++|...+..+++.. +.++.++..+...|.+.|++++|.+.|+++.   +.+...|..+...|.+.|++++|+..|
T Consensus        38 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  116 (537)
T 3fp2_A           38 AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL  116 (537)
T ss_dssp             TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            455555555555555543 3345555555555555666666665555543   234445555555555556666665555


Q ss_pred             HHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047067           82 SQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYG--YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKN  159 (566)
Q Consensus        82 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~  159 (566)
                      +.+..   .|+....  .+..+...+... .+...+..+.+..  ..+........+..|....+.+.+...+......+
T Consensus       117 ~~~~~---~~~~~~~--~~~~~~~~~~~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (537)
T 3fp2_A          117 SVLSL---NGDFDGA--SIEPMLERNLNK-QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD  190 (537)
T ss_dssp             HHHC----------------CHHHHHHHH-HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred             HHHhc---CCCCChH--HHHHHHHHHHHH-HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence            42211   1221110  000111111111 2333333322210  00011111233334445555555555555544433


Q ss_pred             hH---HHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHhccCChHHHHHHHHH
Q 047067          160 EV---SWNALIAGHARK--------SEGEKALRTFSEMLREGFEPT--------HFSYSSVFTALASTGSLEQGKWVHAH  220 (566)
Q Consensus       160 ~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd--------~~t~~~ll~~~~~~~~~~~a~~~~~~  220 (566)
                      ..   .+..+...+...        |++++|+.+|+++.+.  .|+        ..++..+...+...|++++|...+..
T Consensus       191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  268 (537)
T 3fp2_A          191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE  268 (537)
T ss_dssp             SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            22   333333333222        4788999999998874  344        23466667788889999999999999


Q ss_pred             HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 047067          221 VIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV  297 (566)
Q Consensus       221 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  297 (566)
                      +++..  |+...+..+...|...|++++|.+.|+++.   ..+..+|..+...|...|++++|+..|+++.+.. +.+..
T Consensus       269 ~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~  345 (537)
T 3fp2_A          269 SINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY  345 (537)
T ss_dssp             HHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSH
T ss_pred             HHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Confidence            99875  347788889999999999999999999874   4467889999999999999999999999998853 22467


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCC----CHHHHHHH
Q 047067          298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PIEP----TAAVWGAL  369 (566)
Q Consensus       298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~l  369 (566)
                      .+..+...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.++++    +..+    ....+..+
T Consensus       346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  424 (537)
T 3fp2_A          346 PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK  424 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence            88889999999999999999997666654 445678888999999999999999999886    1111    22334455


Q ss_pred             HHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          370 LGACRMH----------KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       370 l~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ...+...          |++++|...++++++.+|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus       425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            5667777          999999999999999999999999999999999999999999999998743

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=1.7e-18  Score=170.76  Aligned_cols=295  Identities=13%  Similarity=0.050  Sum_probs=221.2

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067          129 VYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL  205 (566)
Q Consensus       129 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~  205 (566)
                      +..+..+...|.+.|++++|...|+++.+   .+..+|..+...+...|++++|+..|+++.... +.+...+..+...+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence            44566667777777777777777776543   356677777777777777777777777776642 22456677777777


Q ss_pred             hccCChHHHHHHHHHHHHhCCC--CcHhHHHHH------------HHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHH
Q 047067          206 ASTGSLEQGKWVHAHVIKSGGQ--LVAFVGNTL------------VDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSML  268 (566)
Q Consensus       206 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li  268 (566)
                      ...|++++|...+..+.+....  .+...+..+            ...+...|++++|.+.|+++.   ..+...|..+.
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            7777777777777777765420  233444333            577888899999998888873   34677888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHH------------H
Q 047067          269 TGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYV------------T  336 (566)
Q Consensus       269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~------------~  336 (566)
                      ..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...+....+... .+...+.            .
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIE  239 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHH
Confidence            88889999999999999888753 33577888888888888999999998866655432 2222222            3


Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067          337 FVDLLGRAGLLDRALKFIREM-PIEPT-A----AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA  410 (566)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  410 (566)
                      +...+.+.|++++|...++++ ...|+ .    ..+..+..++...|++++|...++++++.+|+++.++..++.+|...
T Consensus       240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (359)
T 3ieg_A          240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE  319 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            366788999999999999887 33343 2    23555778899999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhC
Q 047067          411 GRLNDAARARKMMKES  426 (566)
Q Consensus       411 g~~~~a~~~~~~m~~~  426 (566)
                      |++++|...++++.+.
T Consensus       320 g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          320 EMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             TCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999999874

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=1.2e-17  Score=164.50  Aligned_cols=311  Identities=11%  Similarity=0.035  Sum_probs=225.6

Q ss_pred             CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047067           57 DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLL  136 (566)
Q Consensus        57 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li  136 (566)
                      |+..|..+...+.+.|++++|+..|+++.+.  .|+                                   +..++..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~-----------------------------------~~~~~~~~a   44 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD-----------------------------------NYIAYYRRA   44 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------------------CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc-----------------------------------cHHHHHHHH
Confidence            3456777888888888998998888888764  222                                   223344445


Q ss_pred             HHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC----CHHHHHHH--------
Q 047067          137 DMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEP----THFSYSSV--------  201 (566)
Q Consensus       137 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~l--------  201 (566)
                      ..|...|++++|...|+++.+   .+...|..+...|...|++++|+..|+++...  .|    +...+..+        
T Consensus        45 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~  122 (359)
T 3ieg_A           45 TVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQR  122 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHH
Confidence            555555666666666655432   24455666666666666666666666666553  23    22222222        


Q ss_pred             ----HHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHc
Q 047067          202 ----FTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQH  274 (566)
Q Consensus       202 ----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~  274 (566)
                          ...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.   ..+..+|..+...|...
T Consensus       123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  201 (359)
T 3ieg_A          123 LRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL  201 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence                466778888888888888888775 4567778888888999999999999888874   34677888889999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCC-HHHHH------------HHHHHHHccCCHHHHHHHHHhHHhhCCCccH----HHHHHH
Q 047067          275 GLGKATVRWFEKMLRNGIAPN-QVTFL------------CVLTACSHAGLLDEGQGYFALMKKHGVEPEE----AHYVTF  337 (566)
Q Consensus       275 g~~~~A~~~~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l  337 (566)
                      |++++|+..|++..+.  .|+ ...+.            .+...+...|++++|...+....+.... +.    ..+..+
T Consensus       202 ~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l  278 (359)
T 3ieg_A          202 GDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERI  278 (359)
T ss_dssp             TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence            9999999999998874  333 23222            2356688899999999999666654422 22    335567


Q ss_pred             HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067          338 VDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA  410 (566)
Q Consensus       338 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  410 (566)
                      ...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..+..++...
T Consensus       279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            88999999999999999988 3345 6789999999999999999999999999999999988888777766543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=5.1e-18  Score=165.38  Aligned_cols=285  Identities=12%  Similarity=0.025  Sum_probs=220.1

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047067          126 DWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVF  202 (566)
Q Consensus       126 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll  202 (566)
                      +.+..++..+...+...|++++|.++|+++.+   .+...+..++..+...|++++|+.+++++.... +.+...+..+.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            45666777788888888888888888888654   245566777788888888888888888887753 33566777778


Q ss_pred             HHHhccC-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHH
Q 047067          203 TALASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGK  278 (566)
Q Consensus       203 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~  278 (566)
                      ..+...| ++++|...+..+++.. +.+...+..+..+|...|++++|...|+++.   ..+...|..+...|...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            8888888 8888888888887765 4456677888888888888888888888773   335677777888888889999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC--------CCccHHHHHHHHHHhhhcCCHHHH
Q 047067          279 ATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHG--------VEPEEAHYVTFVDLLGRAGLLDRA  350 (566)
Q Consensus       279 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A  350 (566)
                      +|+..|++..+.. +.+...+..+...+...|++++|...+....+..        .+.....+..+...|.+.|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999998888753 3356778888888888899999988885554431        133456788888889999999999


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCh
Q 047067          351 LKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY-ASAGRL  413 (566)
Q Consensus       351 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~  413 (566)
                      ...+++. ...| +...|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence            9988877 3234 5678888888899999999999999999999999888888888888 444543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=3.6e-18  Score=178.63  Aligned_cols=390  Identities=11%  Similarity=0.032  Sum_probs=260.8

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 047067           27 IAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKAS  103 (566)
Q Consensus        27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~  103 (566)
                      ...+..+...|.+.|++++|.+.|+++.   +.++..|..+...|.+.|++++|++.|++..+.. +.+..++..+..++
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            3455666667777777777777777654   3456667777777777777777777777776642 22344555555666


Q ss_pred             ccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC------hHHHHHHHHHHHhCCChh
Q 047067          104 GAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKN------EVSWNALIAGHARKSEGE  177 (566)
Q Consensus       104 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~  177 (566)
                      ...|+.+ .+...+. ....  .|+  ..+..+..+...+....|...++.+...+      .......+..+....+.+
T Consensus       104 ~~~g~~~-~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (537)
T 3fp2_A          104 ESLGNFT-DAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH  177 (537)
T ss_dssp             HHHTCHH-HHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred             HHcCCHH-HHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence            6666666 5555553 2211  121  11222334444444556666666554321      111223334444455555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc--------cCChHHHHHHHHHHHHhCCCCc------HhHHHHHHHHHHh
Q 047067          178 KALRTFSEMLREGFEPTHFSYSSVF-TALAS--------TGSLEQGKWVHAHVIKSGGQLV------AFVGNTLVDMYAK  242 (566)
Q Consensus       178 ~A~~~~~~m~~~g~~pd~~t~~~ll-~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~  242 (566)
                      .++..+.....  ..+....+...+ ..+..        .+++++|..+++.+++......      ..++..+...+..
T Consensus       178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~  255 (537)
T 3fp2_A          178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL  255 (537)
T ss_dssp             HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence            54444333221  122222222222 22222        2478889999998887653221      2356677788999


Q ss_pred             cCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          243 SGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       243 ~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      .|++++|...|+++.  .|+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+.
T Consensus       256 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  334 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ  334 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999999883  4557889999999999999999999999999863 3357889999999999999999999997


Q ss_pred             hHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067          321 LMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG  398 (566)
Q Consensus       321 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  398 (566)
                      ...+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++++..|++..
T Consensus       335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            766654 334678888999999999999999999988 3334 5678899999999999999999999999998876654


Q ss_pred             h------HHHHHHHHHhc----------CChhHHHHHHHHHHhCC
Q 047067          399 P------HILLANIYASA----------GRLNDAARARKMMKESG  427 (566)
Q Consensus       399 ~------~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g  427 (566)
                      .      +..++.+|...          |++++|...++++.+..
T Consensus       414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  458 (537)
T 3fp2_A          414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD  458 (537)
T ss_dssp             CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence            4      44556888888          99999999999998753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=1.2e-18  Score=170.42  Aligned_cols=293  Identities=11%  Similarity=0.079  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCC
Q 047067           29 MQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGAT  108 (566)
Q Consensus        29 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~  108 (566)
                      ..+.|+.   +.|++++|.+++++++.|+  +|..|+.++.+.|++++|++.|.+      .+|..+|..++.++...|+
T Consensus         8 a~~~ll~---~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~   76 (449)
T 1b89_A            8 AVQVLIE---HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGN   76 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHH---HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCC
Confidence            3444443   7889999999999996664  999999999999999999999965      3688899999999999999


Q ss_pred             chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047067          109 DDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLR  188 (566)
Q Consensus       109 ~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  188 (566)
                      ++ .+...+....+.  .+++.+.+.|+.+|.++|+++++.++++.   |+..+|+.+...|...|++++|...|..+  
T Consensus        77 ~E-eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A           77 WE-ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--  148 (449)
T ss_dssp             -----------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--
T ss_pred             HH-HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence            99 888888888874  45688899999999999999999988864   67789999999999999999999999977  


Q ss_pred             CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH
Q 047067          189 EGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSML  268 (566)
Q Consensus       189 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li  268 (566)
                             ..|..+..++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus       149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv  214 (449)
T 1b89_A          149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELI  214 (449)
T ss_dssp             -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHH
T ss_pred             -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHH
Confidence                   36899999999999999999999987      378999999999999999999988877755 4555556789


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHhHHhhCCCc------cHHHHHHHHHH
Q 047067          269 TGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH--AGLLDEGQGYFALMKKHGVEP------EEAHYVTFVDL  340 (566)
Q Consensus       269 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~p------~~~~~~~li~~  340 (566)
                      ..|.+.|++++|+.+++..+... +-....|+-+.-++++  .+++.+..+.|.  .+.+++|      +...|..++-.
T Consensus       215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~l  291 (449)
T 1b89_A          215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFL  291 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988643 3345566666656654  556667777662  1223444      35678999999


Q ss_pred             hhhcCCHHHHHHHHHhC
Q 047067          341 LGRAGLLDRALKFIREM  357 (566)
Q Consensus       341 ~~~~g~~~~A~~~~~~~  357 (566)
                      |...++++.|...+-+-
T Consensus       292 y~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          292 YDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HHHTTCHHHHHHHHHHS
T ss_pred             HHhhchHHHHHHHHHhC
Confidence            99999999998876554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=2.7e-16  Score=164.13  Aligned_cols=403  Identities=11%  Similarity=0.067  Sum_probs=294.7

Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC
Q 047067           15 HAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKP   91 (566)
Q Consensus        15 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p   91 (566)
                      ++..++.. +.|..+|..++. +.+.|++++|+.+|+++.   +.+...|...+..+.+.|++++|..+|++.+..  .|
T Consensus         2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p   77 (530)
T 2ooe_A            2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL   77 (530)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred             hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence            45555554 557889999998 478999999999999875   335668999999999999999999999999875  47


Q ss_pred             ChhHHHHHHHHH-ccCCCchHHHH----HHHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHHhC
Q 047067           92 NQFTLSSVLKAS-GAGATDDKFGR----QVHAFCLKY-GYDW-NVYVGSSLLDMYAR---------FDQMDDAWFLFTAL  155 (566)
Q Consensus        92 ~~~t~~~ll~a~-~~~~~~~~~~~----~i~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~~  155 (566)
                      +...|...+... ...++.+ .++    .+++..++. |..| +..+|...+....+         .|+++.|+++|++.
T Consensus        78 ~~~lw~~~~~~~~~~~~~~~-~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a  156 (530)
T 2ooe_A           78 HIDLWKCYLSYVRETKGKLP-SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG  156 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTTST-THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHccchh-hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence            877776666432 2345555 444    467766654 5544 56788888887765         78999999999986


Q ss_pred             CC-CC---hHHHHHHHHHH-------------HhCCChhHHHHHHHHHH------HCC---CCCCH--------HHHHHH
Q 047067          156 ES-KN---EVSWNALIAGH-------------ARKSEGEKALRTFSEML------REG---FEPTH--------FSYSSV  201 (566)
Q Consensus       156 ~~-~~---~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~pd~--------~t~~~l  201 (566)
                      .+ |+   ...|.......             .+.+++..|..++.++.      +..   ++|+.        ..|...
T Consensus       157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~  236 (530)
T 2ooe_A          157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY  236 (530)
T ss_dssp             TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred             HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence            64 22   23444332211             12456677777776632      211   34441        344444


Q ss_pred             HHHHhc----cCCh----HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC-
Q 047067          202 FTALAS----TGSL----EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK-------SGSIE-------DAEKVFNRLLK-  258 (566)
Q Consensus       202 l~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~-  258 (566)
                      +.....    .++.    +.+..++++++... +.+..+|..++..+.+       .|+++       +|..+|++... 
T Consensus       237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~  315 (530)
T 2ooe_A          237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST  315 (530)
T ss_dssp             HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence            433222    1232    36777899888874 5677888888888876       69987       89999998763 


Q ss_pred             --C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHH
Q 047067          259 --R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ--VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAH  333 (566)
Q Consensus       259 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~  333 (566)
                        | +...|..++..+.+.|++++|..+|+++++  ..|+.  ..|..++..+.+.|++++|..+|....+.. +.+...
T Consensus       316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~  392 (530)
T 2ooe_A          316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHV  392 (530)
T ss_dssp             TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHH
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHH
Confidence              3 578899999999999999999999999998  45653  478888888889999999999997666532 222333


Q ss_pred             HHHHHHH-hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHH
Q 047067          334 YVTFVDL-LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG----PHILLANI  406 (566)
Q Consensus       334 ~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~  406 (566)
                      |.....+ +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+++++++..|.++.    .+...+..
T Consensus       393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~  472 (530)
T 2ooe_A          393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF  472 (530)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            3333222 34689999999999987 3345 5789999999999999999999999999998877665    67777888


Q ss_pred             HHhcCChhHHHHHHHHHHhC
Q 047067          407 YASAGRLNDAARARKMMKES  426 (566)
Q Consensus       407 ~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ....|+.+.+..+.+++.+.
T Consensus       473 e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          473 ESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            88899999999999998763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=3.1e-17  Score=159.77  Aligned_cols=265  Identities=9%  Similarity=0.005  Sum_probs=229.0

Q ss_pred             CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067          158 KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLV  237 (566)
Q Consensus       158 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  237 (566)
                      .+...+..+...+...|++++|+++|+++.... +.+...+..++..+...|++++|..++.++++.. +.+...+..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            356677888889999999999999999998764 3345566677888899999999999999999876 55677888999


Q ss_pred             HHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047067          238 DMYAKSG-SIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD  313 (566)
Q Consensus       238 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  313 (566)
                      ..|...| ++++|.+.|++...   .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            9999999 99999999998743   367889999999999999999999999999863 224567777999999999999


Q ss_pred             HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHHH
Q 047067          314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI----------EPTAAVWGALLGACRMHKNVELG  382 (566)
Q Consensus       314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~a  382 (566)
                      +|...++...+.. +.+...+..+...|.+.|++++|...++++ ..          ..+..+|..+...+...|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999997766543 445788899999999999999999999877 11          23457899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          383 AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       383 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ...++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL  299 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999987653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.80  E-value=7.9e-16  Score=158.97  Aligned_cols=366  Identities=11%  Similarity=0.026  Sum_probs=283.1

Q ss_pred             CChhHHHHHHHHHHh----cCChhHHHHHHccCC-CCCcchHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCChhH
Q 047067           25 NDIAMQNTILNAYAK----CGCLDEARKLFDEMP-VKDMVTWTALISGYSQ----NDQPENAIILFSQMLRLGLKPNQFT   95 (566)
Q Consensus        25 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t   95 (566)
                      .++.....|...|..    .+++++|...|++.. ..++..+..|...|..    .+++++|++.|++..+.|   +...
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a  113 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA  113 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            367778888888887    789999999998764 3467788888888888    889999999999988765   4455


Q ss_pred             HHHHHHHHcc----CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCC-CChHHHHHH
Q 047067           96 LSSVLKASGA----GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR----FDQMDDAWFLFTALES-KNEVSWNAL  166 (566)
Q Consensus        96 ~~~ll~a~~~----~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~l  166 (566)
                      +..+-..+..    .++.+ .+...+....+.|   ++..+..|..+|..    .++.++|.+.|++..+ .+..++..+
T Consensus       114 ~~~Lg~~y~~g~g~~~~~~-~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L  189 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDKA-ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL  189 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            5556556655    66777 8888888888875   56677788888887    7889999999987654 477788888


Q ss_pred             HHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067          167 IAGHAR----KSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS----TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD  238 (566)
Q Consensus       167 i~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  238 (566)
                      ...|..    .+++++|++.|++..+.|   +...+..+...+..    .++.++|...++...+.+   +...+..|..
T Consensus       190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  263 (490)
T 2xm6_A          190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY  263 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred             HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            888888    889999999999888765   55666677777764    788999999998888765   4456667777


Q ss_pred             HHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067          239 MYAK----SGSIEDAEKVFNRLLK-RDVVSWNSMLTGCAQH-----GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH  308 (566)
Q Consensus       239 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  308 (566)
                      +|..    .++.++|...|++..+ .+..++..+...|...     +++++|+..|++..+.|   +...+..+...+..
T Consensus       264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~  340 (490)
T 2xm6_A          264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR  340 (490)
T ss_dssp             HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence            8877    8899999999988754 4677788888888887     89999999999988865   45566677777766


Q ss_pred             cC---CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 047067          309 AG---LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR----AGLLDRALKFIREMPIEPTAAVWGALLGACRM----HK  377 (566)
Q Consensus       309 ~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g  377 (566)
                      .|   ++++|...|+...+.+   +...+..|..+|..    .+++++|.+.|++.--..+...+..|...|..    .+
T Consensus       341 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~  417 (490)
T 2xm6_A          341 LGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER  417 (490)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred             CCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence            56   7888999887666653   56677778888887    78999999999887212367778888888877    78


Q ss_pred             CHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 047067          378 NVELGAYAAERIFELDPH---DSGPHILLANIYAS  409 (566)
Q Consensus       378 ~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~  409 (566)
                      +.++|...++++.+.+|+   ++.+...|+.++..
T Consensus       418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence            999999999999988844   66566666655543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=1.3e-17  Score=165.29  Aligned_cols=282  Identities=9%  Similarity=-0.034  Sum_probs=223.7

Q ss_pred             HHhcCCHHHHHH-HHHhCCC---C----ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047067          139 YARFDQMDDAWF-LFTALES---K----NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS  210 (566)
Q Consensus       139 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~  210 (566)
                      |...|++++|.. .|++...   .    +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            344578888888 8876543   1    34568888999999999999999999998864 4467788888899999999


Q ss_pred             hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHH---------------HHHHHH
Q 047067          211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-DVVSWNS---------------MLTGCA  272 (566)
Q Consensus       211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~  272 (566)
                      +++|...+..+++.. +.+..++..+...|...|++++|.+.|+++..  | +...+..               .+..+.
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            999999999998886 55778888999999999999999999998742  2 2222221               233344


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067          273 QHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL  351 (566)
Q Consensus       273 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  351 (566)
                      ..|++++|+..|+++.+..... +..++..+...+...|++++|...+..+.... +.+...+..+...|.+.|++++|.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence            8899999999999999853221 47889999999999999999999997766653 345778999999999999999999


Q ss_pred             HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCChhHHHH
Q 047067          352 KFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD-----------SGPHILLANIYASAGRLNDAAR  418 (566)
Q Consensus       352 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~  418 (566)
                      ..++++ ...| +..+|..+..++...|++++|...+++++++.|++           ..++..++.+|...|++++|..
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            999987 3344 57899999999999999999999999999998877           7889999999999999999998


Q ss_pred             HHHHH
Q 047067          419 ARKMM  423 (566)
Q Consensus       419 ~~~~m  423 (566)
                      ++++.
T Consensus       352 ~~~~~  356 (368)
T 1fch_A          352 ADARD  356 (368)
T ss_dssp             HHTTC
T ss_pred             hHHHH
Confidence            87643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.79  E-value=1.1e-16  Score=164.60  Aligned_cols=370  Identities=13%  Similarity=0.058  Sum_probs=217.9

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHccCC------------CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChh
Q 047067           27 IAMQNTILNAYAKCGCLDEARKLFDEMP------------VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQF   94 (566)
Q Consensus        27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~   94 (566)
                      ...||.|...|...|++++|++.|++..            ....++|+.+...|...|++++|...|++..+..-     
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~-----  125 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE-----  125 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH-----
Confidence            3456666666666666666666655421            12334566666666666666666666655433100     


Q ss_pred             HHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhCCC--C-ChHHHHHHHHH
Q 047067           95 TLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARF--DQMDDAWFLFTALES--K-NEVSWNALIAG  169 (566)
Q Consensus        95 t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~~--~-~~~~~~~li~~  169 (566)
                             .....                 .-.....+++.+..++.+.  +++++|...|++..+  | ++..+..+...
T Consensus       126 -------~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~  181 (472)
T 4g1t_A          126 -------KFSSP-----------------YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA  181 (472)
T ss_dssp             -------HSCCS-----------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             -------hcccc-----------------cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                   00000                 0011223344444444443  457788888877543  2 45555555444


Q ss_pred             ---HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 047067          170 ---HARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS----TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK  242 (566)
Q Consensus       170 ---~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  242 (566)
                         +...++.++|++.|++..+.. +.+..++..+...+..    .++.++|.+.+++..+.. +.+..++..+...|.+
T Consensus       182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~  259 (472)
T 4g1t_A          182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR  259 (472)
T ss_dssp             HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred             HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence               345677788888888777643 2344455554444433    456778888888887765 5566677788888888


Q ss_pred             cCCHHHHHHHHHhcC---CCChhHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047067          243 SGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQ-------------------HGLGKATVRWFEKMLRNGIAPNQVTFL  300 (566)
Q Consensus       243 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~  300 (566)
                      .|++++|...|++..   ..+..+|..+...|..                   .+..++|+..|++..+.. +.+..++.
T Consensus       260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~  338 (472)
T 4g1t_A          260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS  338 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred             cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence            888888888888763   3355666666655533                   234667888888887743 22456778


Q ss_pred             HHHHHHHccCCHHHHHHHHHhHHhhCCCccHH--HHHHHHH-HhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 047067          301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEA--HYVTFVD-LLGRAGLLDRALKFIREM-PIEPTAAVWGALLGACRMH  376 (566)
Q Consensus       301 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~  376 (566)
                      .+...+...|++++|...|+........|...  .+..+.. .+...|+.++|...|++. .+.|+...+...       
T Consensus       339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~-------  411 (472)
T 4g1t_A          339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM-------  411 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH-------
T ss_pred             hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-------
Confidence            88899999999999999997776655443322  2333333 345789999999999887 666765444332       


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 047067          377 KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVKKEPACSWV  437 (566)
Q Consensus       377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~  437 (566)
                        ...+.+++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.|-......+|+
T Consensus       412 --~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          412 --KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             --HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence              34456778888999999999999999999999999999999999998765444445553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=7.2e-15  Score=151.76  Aligned_cols=353  Identities=12%  Similarity=0.030  Sum_probs=296.7

Q ss_pred             CCCcchHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHcc----CCCchHHHHHHHHHHHHhCCC
Q 047067           55 VKDMVTWTALISGYSQ----NDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGA----GATDDKFGRQVHAFCLKYGYD  126 (566)
Q Consensus        55 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~~~~~i~~~~~~~g~~  126 (566)
                      ..++.++..+...|..    .+++++|+..|++..+.|   +...+..+-..+..    .++.+ .+...+....+.|  
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~-~A~~~~~~a~~~~--  109 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYA-QAVIWYKKAALKG--  109 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT--
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHCC--
Confidence            4577888888888888    899999999999998865   45566666666666    78888 8999999998876  


Q ss_pred             CchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCC-ChHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHH
Q 047067          127 WNVYVGSSLLDMYAR----FDQMDDAWFLFTALESK-NEVSWNALIAGHAR----KSEGEKALRTFSEMLREGFEPTHFS  197 (566)
Q Consensus       127 ~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t  197 (566)
                       ++..+..|..+|..    .+++++|.+.|++..+. +..++..+...|..    .+++++|++.|++..+.|   +...
T Consensus       110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence             56777889999998    89999999999987654 67788889999988    889999999999998875   6777


Q ss_pred             HHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHH
Q 047067          198 YSSVFTALAS----TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK----SGSIEDAEKVFNRLLK-RDVVSWNSML  268 (566)
Q Consensus       198 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li  268 (566)
                      +..+...+..    .++.++|...+.+..+.+   +...+..|..+|..    .+++++|...|++..+ .+..++..+.
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg  262 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG  262 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            8888888877    899999999999999876   45677788888887    8999999999998754 4677888888


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067          269 TGCAQ----HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA-----GLLDEGQGYFALMKKHGVEPEEAHYVTFVD  339 (566)
Q Consensus       269 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  339 (566)
                      ..|..    .++.++|+.+|++..+.|   +...+..+...+...     +++++|...+....+.+   +...+..|..
T Consensus       263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  336 (490)
T 2xm6_A          263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGA  336 (490)
T ss_dssp             HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence            88888    899999999999998865   556777777778776     89999999997777755   3456777888


Q ss_pred             HhhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 047067          340 LLGRAG---LLDRALKFIREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDSGPHILLANIYAS---  409 (566)
Q Consensus       340 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  409 (566)
                      +|.+.|   ++++|.++|++.--..+...+..|...|..    .++.++|...++++.+.+  ++.++..|+.+|..   
T Consensus       337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g  414 (490)
T 2xm6_A          337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG  414 (490)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred             HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence            887766   889999999988223578889999999988    899999999999999865  46789999999998   


Q ss_pred             -cCChhHHHHHHHHHHhCCC
Q 047067          410 -AGRLNDAARARKMMKESGV  428 (566)
Q Consensus       410 -~g~~~~a~~~~~~m~~~g~  428 (566)
                       .+++++|...+++..+.+.
T Consensus       415 ~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          415 VERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHCCC
Confidence             8999999999999998764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.77  E-value=4.9e-16  Score=148.46  Aligned_cols=269  Identities=7%  Similarity=-0.080  Sum_probs=216.3

Q ss_pred             HHHhcCCHHHHHHHHHhCCCCCh----HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067          138 MYARFDQMDDAWFLFTALESKNE----VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ  213 (566)
Q Consensus       138 ~y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~  213 (566)
                      -....|++..|+..++.....++    .....+..+|...|++++|+..++..    -+|+..++..+...+...++.+.
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence            34567999999999988766542    34566788999999999999877542    35677888888999999999999


Q ss_pred             HHHHHHHHHHhCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047067          214 GKWVHAHVIKSGG-QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI  292 (566)
Q Consensus       214 a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  292 (566)
                      |.+.++.++..+. +.+...+..+..+|...|++++|++.|++  ..+...+..++..|.+.|++++|.+.|+++.+.  
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--  159 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--  159 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence            9999999998774 44667777888999999999999999999  568889999999999999999999999999985  


Q ss_pred             CCCHHHH---HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047067          293 APNQVTF---LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWG  367 (566)
Q Consensus       293 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  367 (566)
                      .|+....   ...+..+...|++++|..+|+.+.+. .+.+...++.+...+.+.|++++|...+++. ...| +..+|.
T Consensus       160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~  238 (291)
T 3mkr_A          160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI  238 (291)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4664321   12334444568999999999777765 3567888999999999999999999999987 4455 667899


Q ss_pred             HHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH
Q 047067          368 ALLGACRMHKNVEL-GAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA  419 (566)
Q Consensus       368 ~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  419 (566)
                      .++..+...|+.++ +.++++++++++|+++.+.    +...+.+.++++..-
T Consensus       239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ  287 (291)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence            99999999999875 6789999999999987543    445556666655443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=7.4e-19  Score=171.92  Aligned_cols=252  Identities=13%  Similarity=0.108  Sum_probs=120.2

Q ss_pred             HhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 047067          140 ARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHA  219 (566)
Q Consensus       140 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~  219 (566)
                      -+.|++++|.++++++..+  .+|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|..++.
T Consensus        14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~   85 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ   85 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            4678899999999999665  49999999999999999999999653      678899999999999999999999888


Q ss_pred             HHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047067          220 HVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTF  299 (566)
Q Consensus       220 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~  299 (566)
                      ..++.  .+++.+.+.|+.+|.++|+++++.++++   .|+..+|+.++..|...|++++|...|..+         ..|
T Consensus        86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~  151 (449)
T 1b89_A           86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF  151 (449)
T ss_dssp             -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred             HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence            88774  4557888999999999999999998886   477789999999999999999999999977         378


Q ss_pred             HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047067          300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNV  379 (566)
Q Consensus       300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~  379 (566)
                      ..+..++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+...|+.  ...++..|.+.|.+
T Consensus       152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~  223 (449)
T 1b89_A          152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCH
Confidence            99999999999999999999765      26889999999999999999998777766545544  44688999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CChhHHHHHHH
Q 047067          380 ELGAYAAERIFELDPHDSGPHILLANIYASA--GRLNDAARARK  421 (566)
Q Consensus       380 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~  421 (566)
                      ++|..+++..+.++|...+.|+.|+.+|++-  ++..+..+.|.
T Consensus       224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~  267 (449)
T 1b89_A          224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW  267 (449)
T ss_dssp             HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999865  45555555554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.77  E-value=3.7e-17  Score=162.03  Aligned_cols=260  Identities=7%  Similarity=-0.077  Sum_probs=181.6

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067          160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM  239 (566)
Q Consensus       160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  239 (566)
                      ...|..+...+.+.|++++|++.|+++.... +.+..++..+...+...|++++|...++++++.. +.+..++..+..+
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS  142 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3345555566666666666666666665542 2345555566666666666666666666666554 3345566666666


Q ss_pred             HHhcCCHHHHHHHHHhcCCC-------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 047067          240 YAKSGSIEDAEKVFNRLLKR-------------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PNQVTFLCVLTA  305 (566)
Q Consensus       240 ~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a  305 (566)
                      |...|++++|...|+++.+.             ....+..+...+...|++++|+..|+++.+.... ++..++..+...
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            66666666666666665321             1223445577888889999999999998885322 157788888899


Q ss_pred             HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 047067          306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGA  383 (566)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~  383 (566)
                      +...|++++|...|+...+.. +.+...|..+...|.+.|++++|...|+++ ...| +..+|..+..++...|++++|.
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999996666553 445778899999999999999999999887 4445 4788999999999999999999


Q ss_pred             HHHHHHHhcCCC------------CCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067          384 YAAERIFELDPH------------DSGPHILLANIYASAGRLNDAARARKM  422 (566)
Q Consensus       384 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~  422 (566)
                      ..+++++++.|+            +..++..++.++...|+.+.+.++.++
T Consensus       302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999998776            356788999999999999988877654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=5.6e-15  Score=154.16  Aligned_cols=385  Identities=12%  Similarity=0.074  Sum_probs=281.2

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHH-HHhCCCccHHHH--
Q 047067            5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP--VKDMVTWTALISG-YSQNDQPENAII--   79 (566)
Q Consensus         5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~-~~~~g~~~~A~~--   79 (566)
                      .|+++.|+.+++++++. ++.+...|..++..+.+.|++++|+.+|++..  .|++..|...+.. ....|+.++|.+  
T Consensus        25 ~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~  103 (530)
T 2ooe_A           25 NQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM  103 (530)
T ss_dssp             SSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred             hCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence            57899999999999986 36678899999999999999999999999875  4677778877753 345688887765  


Q ss_pred             --HHHHHHH-CCCCCC-hhHHHHHHHHHcc---------CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH-------
Q 047067           80 --LFSQMLR-LGLKPN-QFTLSSVLKASGA---------GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMY-------  139 (566)
Q Consensus        80 --l~~~m~~-~g~~p~-~~t~~~ll~a~~~---------~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y-------  139 (566)
                        +|++.+. .|..|+ ...|...+.....         .++.+ .++.++..+++........+|.......       
T Consensus       104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~  182 (530)
T 2ooe_A          104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT-AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHL  182 (530)
T ss_dssp             HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH-HHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHH-HHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhH
Confidence              7776654 365554 4456555554433         45666 8888888888732111123443332211       


Q ss_pred             ------HhcCCHHHHHHHHHh-------CC------CCC--------hHHHHHHHHHHHhC----CCh----hHHHHHHH
Q 047067          140 ------ARFDQMDDAWFLFTA-------LE------SKN--------EVSWNALIAGHARK----SEG----EKALRTFS  184 (566)
Q Consensus       140 ------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~  184 (566)
                            .+.+++..|..++..       +.      .|+        ...|...+.....+    ++.    ++|+.+|+
T Consensus       183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~  262 (530)
T 2ooe_A          183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE  262 (530)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence                  134567777776664       11      111        35677766544332    232    37888999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 047067          185 EMLREGFEPTHFSYSSVFTALAS-------TGSLE-------QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE  250 (566)
Q Consensus       185 ~m~~~g~~pd~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  250 (566)
                      +..... +-+...|......+.+       .|+++       +|..+++..++.-.+.+..++..++..+.+.|++++|.
T Consensus       263 ~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~  341 (530)
T 2ooe_A          263 QCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH  341 (530)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence            988752 3456677777777664       78987       89999999987334567889999999999999999999


Q ss_pred             HHHHhcC--CC-Ch-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHccCCHHHHHHHHHhHHh
Q 047067          251 KVFNRLL--KR-DV-VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTA-CSHAGLLDEGQGYFALMKK  324 (566)
Q Consensus       251 ~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~  324 (566)
                      .+|+++.  .| +. ..|..++..+.+.|+.++|.++|++..+.  .|+ ...|...... +...|++++|..+|+...+
T Consensus       342 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~  419 (530)
T 2ooe_A          342 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK  419 (530)
T ss_dssp             HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence            9999874  33 33 58999999999999999999999999885  333 3333332222 3358999999999966555


Q ss_pred             hCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067          325 HGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       325 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      .. +.+...|..+++.+.+.|+.++|..+|++.    +..|+  ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus       420 ~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          420 KY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            43 345788999999999999999999999987    33443  458999999999999999999999999998885

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.74  E-value=3e-16  Score=152.56  Aligned_cols=257  Identities=9%  Similarity=-0.073  Sum_probs=172.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 047067          163 WNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK  242 (566)
Q Consensus       163 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  242 (566)
                      |..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++++.. +.+..++..+...|..
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence            3334444444444444444444444332 1233344444444444444555544444444443 2334444455555555


Q ss_pred             cCCHHHHHHHHHhcCC---CChhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047067          243 SGSIEDAEKVFNRLLK---RDVVSWNSM--------------LT-GCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT  304 (566)
Q Consensus       243 ~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  304 (566)
                      .|++++|.+.|+++..   .+...+..+              .. .+...|++++|+..++++.+.. +.+...+..+..
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~  180 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV  180 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            5555555555554421   112222222              22 3667788899999999988753 336778888888


Q ss_pred             HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047067          305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELG  382 (566)
Q Consensus       305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a  382 (566)
                      .+...|++++|...+....+.. +.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            8999999999999996666553 345678888999999999999999999887 3344 578899999999999999999


Q ss_pred             HHHHHHHHhcCCC------------CCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          383 AYAAERIFELDPH------------DSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       383 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      ...++++++..|.            ++.++..++.+|...|++++|..++++.
T Consensus       260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999998            6788999999999999999999988754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.74  E-value=3e-16  Score=155.47  Aligned_cols=238  Identities=13%  Similarity=0.008  Sum_probs=122.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 047067          129 VYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHF-SYSSVFTA  204 (566)
Q Consensus       129 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~  204 (566)
                      ..++..+...|.+.|++++|.+.|+++.+   .+..+|..+...|...|++++|++.|+++....  |+.. .+..+...
T Consensus        98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~  175 (368)
T 1fch_A           98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG  175 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence            34455556666666777777666665432   356667777777777777777777777776643  2221 11100000


Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC---ChhHHHHHHHHHHHcCCHHH
Q 047067          205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL--KR---DVVSWNSMLTGCAQHGLGKA  279 (566)
Q Consensus       205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~  279 (566)
                             ..       .    ..+ ...+..+...+ ..|++++|...|+++.  .|   +..+|..+...|...|++++
T Consensus       176 -------~~-------~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~  235 (368)
T 1fch_A          176 -------AG-------G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK  235 (368)
T ss_dssp             -----------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             -------hh-------h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence                   00       0    000 00001112222 4555555555555542  11   34455555555555566666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 047067          280 TVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-P  358 (566)
Q Consensus       280 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~  358 (566)
                      |+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++ .
T Consensus       236 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          236 AVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666665555531 1234555555555666666666666664444332 223455555666666666666666666554 1


Q ss_pred             CCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047067          359 IEP------------TAAVWGALLGACRMHKNVELGAYAAERIF  390 (566)
Q Consensus       359 ~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  390 (566)
                      +.|            ...+|..+..++...|+.++|..++++.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence            111            14566667777777777777666665544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.73  E-value=1.3e-15  Score=145.61  Aligned_cols=247  Identities=10%  Similarity=0.026  Sum_probs=203.0

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 047067          167 IAGHARKSEGEKALRTFSEMLREGFEPTH--FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG  244 (566)
Q Consensus       167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  244 (566)
                      |.-....|++..|+..++....  ..|+.  .....+..++...|+++.|...++.    .-+|+...+..+...|...|
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence            3445678999999999887644  34543  3556678899999999999876544    24667788889999999999


Q ss_pred             CHHHHHHHHHhcC----CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067          245 SIEDAEKVFNRLL----KR-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF  319 (566)
Q Consensus       245 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  319 (566)
                      +.++|.+.++++.    .| +...+..+...|.+.|++++|++.+++      +.+...+..+...+.+.|++++|...+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999873    23 567788888999999999999999998      457788999999999999999999999


Q ss_pred             HhHHhhCCCccHH---HHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067          320 ALMKKHGVEPEEA---HYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDP  394 (566)
Q Consensus       320 ~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  394 (566)
                      +.+.+..  |+..   ....++..+...|++++|..+|+++  ....+...|+.+..++...|++++|+..++++++++|
T Consensus       154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7777664  4432   1233445566679999999999998  2234778999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhcCChhH-HHHHHHHHHhCC
Q 047067          395 HDSGPHILLANIYASAGRLND-AARARKMMKESG  427 (566)
Q Consensus       395 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g  427 (566)
                      +++.++..++.++...|++++ +.++++++.+..
T Consensus       232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999986 578999888643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=6.1e-16  Score=153.26  Aligned_cols=230  Identities=11%  Similarity=0.036  Sum_probs=194.7

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHH
Q 047067          194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTG  270 (566)
Q Consensus       194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~  270 (566)
                      +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|+..|+++.   ..+..+|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34558888899999999999999999999986 5678899999999999999999999999874   3468899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC-ccHHHHHHHH
Q 047067          271 CAQHGLGKATVRWFEKMLRNGIAPNQ-----------VTFLCVLTACSHAGLLDEGQGYFALMKKHGVE-PEEAHYVTFV  338 (566)
Q Consensus       271 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li  338 (566)
                      |...|++++|+..|+++.+.  .|+.           ..+..+...+...|++++|..+++.+.+.... ++...+..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999884  3332           23344577889999999999999766665422 2678899999


Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067          339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA  416 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  416 (566)
                      ..|.+.|++++|.+.++++ ...| +..+|..+..++...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999987 3344 6789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 047067          417 ARARKMMKES  426 (566)
Q Consensus       417 ~~~~~~m~~~  426 (566)
                      ...++++.+.
T Consensus       301 ~~~~~~al~~  310 (365)
T 4eqf_A          301 VSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999863

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.70  E-value=2e-17  Score=174.29  Aligned_cols=165  Identities=11%  Similarity=0.050  Sum_probs=131.5

Q ss_pred             CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 047067          225 GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL-------LKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQV  297 (566)
Q Consensus       225 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  297 (566)
                      .......+||+||++|+++|++++|.++|++|       ..||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+
T Consensus       122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv  201 (1134)
T 3spa_A          122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL  201 (1134)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence            34555678999999999999999999999776       36899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCC-HHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC------HHHHHHHH
Q 047067          298 TFLCVLTACSHAGL-LDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPT------AAVWGALL  370 (566)
Q Consensus       298 t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~ll  370 (566)
                      ||++||.++++.|+ .++|.++|+.|.+.|+.||..+|++++....+.+-++...++...+  .|+      ..+...|.
T Consensus       202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL~  279 (1134)
T 3spa_A          202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLLR  279 (1134)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTTH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHHH
Confidence            99999999999997 5789999999999999999999999998877765555554443333  222      23334455


Q ss_pred             HHHHhcC---------CHHHHHHHHHHHHh
Q 047067          371 GACRMHK---------NVELGAYAAERIFE  391 (566)
Q Consensus       371 ~~~~~~g---------~~~~a~~~~~~~~~  391 (566)
                      +.|...+         ..++-...+++-+.
T Consensus       280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~  309 (1134)
T 3spa_A          280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQLH  309 (1134)
T ss_dssp             HHHCCCSCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred             HHHccCCCCcCccccCCHHHHHHHHHHHHH
Confidence            5566554         23555566665553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.70  E-value=1.4e-13  Score=149.72  Aligned_cols=313  Identities=12%  Similarity=0.068  Sum_probs=219.0

Q ss_pred             HHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 047067           64 LISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD  143 (566)
Q Consensus        64 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g  143 (566)
                      +...+...|.+++|..+|++..     -.....+.++.   ..++++ .|.++...+      .++.+|..+..++.+.|
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nld-rAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLD-RAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHH-HHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence            3445566677777777777642     11111222322   334444 444444432      34677888888888888


Q ss_pred             CHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067          144 QMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK  223 (566)
Q Consensus       144 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  223 (566)
                      ++++|.+.|.+.  .|...|..++..+.+.|++++|++.|....+..  ++....+.++.+|++.+++++...+.    +
T Consensus      1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A         1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred             CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence            888888888664  567777888888888888888888887766543  33333334777788887777533332    2


Q ss_pred             hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067          224 SGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL  303 (566)
Q Consensus       224 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  303 (566)
                         .++...+..+.+.|...|++++|...|...     ..|..+...|.+.|++++|++.+++.      .+..+|..+.
T Consensus      1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A         1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence               344555666888888888888888888875     47888888888888888888888876      2567888888


Q ss_pred             HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCH
Q 047067          304 TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMH--KNV  379 (566)
Q Consensus       304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~  379 (566)
                      .+|...|++..|......     +..+...+..++..|.+.|.+++|..+++.. +++| ....|.-|...+++.  ++.
T Consensus      1258 ~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence            888888888888776532     3345666778899999999999999999776 5555 335676666666554  466


Q ss_pred             HHHHHHHHHHHhcCC-----CCCchHHHHHHHHHhcCChhHHHH
Q 047067          380 ELGAYAAERIFELDP-----HDSGPHILLANIYASAGRLNDAAR  418 (566)
Q Consensus       380 ~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~  418 (566)
                      .++.+.|..-..+.|     .+...|.-+...|.+.|+|+.|..
T Consensus      1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            677777777666655     566778889999999999998884

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.69  E-value=1.4e-15  Score=147.85  Aligned_cols=262  Identities=8%  Similarity=-0.007  Sum_probs=192.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047067          129 VYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTAL  205 (566)
Q Consensus       129 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~  205 (566)
                      ...+..+...+.+.|++++|..+|+++.+   .+..+|..+...+...|++++|.+.|+++.... +.+..++..+...+
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   99 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH   99 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence            34456667777778888888888877643   356677777788888888888888888877653 33566777777778


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCcHhHHHHH--------------HH-HHHhcCCHHHHHHHHHhcC---CCChhHHHHH
Q 047067          206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL--------------VD-MYAKSGSIEDAEKVFNRLL---KRDVVSWNSM  267 (566)
Q Consensus       206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l  267 (566)
                      ...|++++|...+..+.+... .+...+..+              .. .+...|++++|.+.|+++.   ..+..+|..+
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  178 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL  178 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            888888888888888777642 222222222              22 3677788888888888763   3467788888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCH
Q 047067          268 LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLL  347 (566)
Q Consensus       268 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  347 (566)
                      ...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+...|.+.|++
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~  256 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY  256 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence            888999999999999999888753 2356788888888888999999999986666543 34567788888899999999


Q ss_pred             HHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067          348 DRALKFIREM-PIEPT-------------AAVWGALLGACRMHKNVELGAYAAERIFELDP  394 (566)
Q Consensus       348 ~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  394 (566)
                      ++|.+.++++ ...|+             ..+|..+..++...|+.++|..++++.++..|
T Consensus       257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~  317 (327)
T 3cv0_A          257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA  317 (327)
T ss_dssp             HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred             HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence            9999988877 22333             56888888999999999999988887765433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.69  E-value=1.9e-13  Score=148.74  Aligned_cols=344  Identities=12%  Similarity=0.069  Sum_probs=242.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHccCC-CC-----CcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc
Q 047067           31 NTILNAYAKCGCLDEARKLFDEMP-VK-----DMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG  104 (566)
Q Consensus        31 ~~li~~~~~~g~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  104 (566)
                      ...+..|...|.+.+|.++++++. .+     +...-|.|+.+..+. +..+..+...+....    +   ..-+-..|.
T Consensus       989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A          989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence            444555666666666666666554 11     223344455555444 334444444433311    1   222344455


Q ss_pred             cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHH
Q 047067          105 AGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFS  184 (566)
Q Consensus       105 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  184 (566)
                      ..+..+ +|..+++...     ......+.+   +-..+++++|.++.++..  +..+|..+..++.+.|++++|++.|.
T Consensus      1061 ~lglyE-EAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A         1061 SNELFE-EAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred             hCCCHH-HHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            566666 6666666531     111111222   226667777777777653  46788899999999999999999986


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 047067          185 EMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSW  264 (566)
Q Consensus       185 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  264 (566)
                      +.      -|...|..++.+|.+.|+++++.+.+....+..  +++.+.+.++.+|++.+++++.....   ..++...|
T Consensus      1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A         1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred             hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence            53      467788889999999999999999998887765  34444456888999999888644443   45566778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc
Q 047067          265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA  344 (566)
Q Consensus       265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  344 (566)
                      ..+...|...|++++|..+|...         ..|..+...+.+.|++++|.+.+++.      .+..+|..+..++...
T Consensus      1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A         1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence            88888899999999999999884         47888999999999999999998664      3557888888888889


Q ss_pred             CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CChhHHHHHHH
Q 047067          345 GLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA--GRLNDAARARK  421 (566)
Q Consensus       345 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~  421 (566)
                      |++..|......+  .-++..+..++..|...|.+++|+.+++..++++|.....|.-|+.+|++.  ++..++.++|.
T Consensus      1264 ~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1264 KEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             hHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999998887654  345556678899999999999999999999999999999998888888865  45556666555

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.68  E-value=4.4e-17  Score=171.70  Aligned_cols=151  Identities=15%  Similarity=0.116  Sum_probs=125.7

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH
Q 047067          125 YDWNVYVGSSLLDMYARFDQMDDAWFLFTALE-------SKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFS  197 (566)
Q Consensus       125 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t  197 (566)
                      ...-..+||+||++|+++|++++|.++|++|.       .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            44456789999999999999999999997764       47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHH
Q 047067          198 YSSVFTALASTGSL-EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR-----DVVSWNSMLTGC  271 (566)
Q Consensus       198 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~  271 (566)
                      |+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+     .+.+.+.|...|
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~  282 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY  282 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence            99999999999985 789999999999999999999999998887766555555554444211     123334455556


Q ss_pred             HHcC
Q 047067          272 AQHG  275 (566)
Q Consensus       272 ~~~g  275 (566)
                      .+.+
T Consensus       283 s~d~  286 (1134)
T 3spa_A          283 AKDG  286 (1134)
T ss_dssp             CCCS
T ss_pred             ccCC
Confidence            5544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.1e-14  Score=134.23  Aligned_cols=225  Identities=12%  Similarity=0.011  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067          161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY  240 (566)
Q Consensus       161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  240 (566)
                      ..|..+...+...|++++|+..|++..+..  .+...+..+..++...|++++|...+..+++.....            
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------   71 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------   71 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence            345555555555555555555555555543  444444444444444444444444444443321000            


Q ss_pred             HhcCCHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067          241 AKSGSIEDAEKVFNRLLKRD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       241 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  316 (566)
                                       .++    ..+|..+...|...|++++|+..|++..+.  .|+..       .+...|++++|.
T Consensus        72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~  125 (258)
T 3uq3_A           72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKEL  125 (258)
T ss_dssp             -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHH
T ss_pred             -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHH
Confidence                             011    456677777777888888888888887773  45532       345567788888


Q ss_pred             HHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067          317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDP  394 (566)
Q Consensus       317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  394 (566)
                      ..+....... +.+...+..+...+...|++++|...++++ ...| +..+|..+...+...|++++|...++++++..|
T Consensus       126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          126 KKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             HHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            8886655432 334567778888888999999999998887 3334 577888999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          395 HDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       395 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +++.++..++.+|...|++++|...+++..+.
T Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          205 NFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=2.2e-14  Score=134.02  Aligned_cols=234  Identities=13%  Similarity=0.033  Sum_probs=150.5

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----HHHHH
Q 047067          128 NVYVGSSLLDMYARFDQMDDAWFLFTALES--KNEVSWNALIAGHARKSEGEKALRTFSEMLREG--FEPT----HFSYS  199 (566)
Q Consensus       128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd----~~t~~  199 (566)
                      ....+..+...|.+.|++++|...|++..+  .+...|..+...|...|++++|++.|++.....  ..|+    ..++.
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            356788899999999999999999987543  678899999999999999999999999987742  1122    45666


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH
Q 047067          200 SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKA  279 (566)
Q Consensus       200 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  279 (566)
                      .+...+...|++++|...+..+.+..  |+       ...+.+.|++++|...++.+                       
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~-----------------------  131 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAE-----------------------  131 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHH-----------------------
Confidence            77777777777777777777777654  22       12344445555555555544                       


Q ss_pred             HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 047067          280 TVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-  357 (566)
Q Consensus       280 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-  357 (566)
                              ...  .| +...+..+...+...|++++|...++...... +.+...+..+...|.+.|++++|...+++. 
T Consensus       132 --------~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          132 --------AYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             --------HHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --------HHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                    432  11 22334444444444455555554443333322 223445555566666666666666666555 


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHH
Q 047067          358 PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELD------PHDSGPHILLA  404 (566)
Q Consensus       358 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~  404 (566)
                      ...| +...|..+..++...|++++|...+++++++.      |.+...+..+.
T Consensus       201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~  254 (258)
T 3uq3_A          201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY  254 (258)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence            2233 45667777777777788888888888877776      66555444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.63  E-value=3.1e-14  Score=129.77  Aligned_cols=195  Identities=16%  Similarity=0.124  Sum_probs=151.8

Q ss_pred             CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 047067          227 QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCV  302 (566)
Q Consensus       227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l  302 (566)
                      +++...+..+...+.+.|++++|...|++..+   .+...|..+...+.+.|++++|+..|++..+.  .| +...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            45666777788888888999999998888743   36678888888999999999999999998885  34 46678888


Q ss_pred             HHHHHcc-----------CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 047067          303 LTACSHA-----------GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWGALL  370 (566)
Q Consensus       303 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll  370 (566)
                      ..++...           |++++|...++...+.. +.+...+..+..+|...|++++|...|++. .+..+...|..+.
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la  158 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence            8888888           99999999997766654 335678888999999999999999999987 2226788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067          371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      .++...|++++|+..++++++++|+++.++..++.+|...|++++|...+++.-
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999887653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=5.9e-14  Score=132.63  Aligned_cols=241  Identities=10%  Similarity=-0.049  Sum_probs=183.5

Q ss_pred             hCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 047067          172 RKSEGEKALRTFSEMLREGFE---PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIED  248 (566)
Q Consensus       172 ~~g~~~~A~~~~~~m~~~g~~---pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  248 (566)
                      ..|++++|+..|+++.+....   .+..++..+...+...|++++|...+.++++.. +.+..++..+..+|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            356778888888888765311   134567777777888888888888888888775 4467778888888999999999


Q ss_pred             HHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhh
Q 047067          249 AEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKH  325 (566)
Q Consensus       249 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  325 (566)
                      |.+.|+++.   ..+..+|..+...|...|++++|+..|+++.+.  .|+.......+..+...|++++|...+......
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            999888874   346788999999999999999999999999884  566555555556667789999999999555544


Q ss_pred             CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          326 GVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       326 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      . +++...+ .++..+...++.++|.+.+++. ...|+     ...|..+...+...|++++|...++++++.+|++...
T Consensus       174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence            3 3344444 3777788888899999999877 33332     4788889999999999999999999999999987644


Q ss_pred             HHHHHHHHHhcCChhHHHHHH
Q 047067          400 HILLANIYASAGRLNDAARAR  420 (566)
Q Consensus       400 ~~~l~~~~~~~g~~~~a~~~~  420 (566)
                      +   ..++...|++++|.+.+
T Consensus       252 ~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          252 H---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             H---HHHHHHHHHHHHC----
T ss_pred             H---HHHHHHHHHHHhhHHHH
Confidence            4   66788889999887765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.59  E-value=5.2e-13  Score=136.97  Aligned_cols=368  Identities=12%  Similarity=-0.016  Sum_probs=213.8

Q ss_pred             CCCCcHHHHHHHHHHHHh-----C---CCCChhHHHHHHHHHHhcCChhHHHHHHccCC-------C----CCcchHHHH
Q 047067            4 HLKKLKEARIVHAHILGS-----A---FKNDIAMQNTILNAYAKCGCLDEARKLFDEMP-------V----KDMVTWTAL   64 (566)
Q Consensus         4 ~~~~~~~a~~i~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~----~~~~~~~~l   64 (566)
                      ..|+.++|.+.+...++.     +   -+....+|+.+..+|...|++++|...|++..       .    ....+++.+
T Consensus        63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~  142 (472)
T 4g1t_A           63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE  142 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence            368899999999887653     1   12235678999999999999999998887642       1    123456665


Q ss_pred             HHHHHh--CCCccHHHHHHHHHHHCCCCCChhH-HHHHHHH---HccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047067           65 ISGYSQ--NDQPENAIILFSQMLRLGLKPNQFT-LSSVLKA---SGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDM  138 (566)
Q Consensus        65 i~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a---~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~  138 (566)
                      ..++..  .+++++|+..|++..+.  .|+... +..+..+   +...++.+ .+...+..+++.. +.+..++..+...
T Consensus       143 g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~-~al~~~~~al~l~-p~~~~~~~~l~~~  218 (472)
T 4g1t_A          143 GWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQ-NAIDPLRQAIRLN-PDNQYLKVLLALK  218 (472)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCC-CTHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHH-HHHHHHHHHhhcC-CcchHHHHHHHHH
Confidence            555554  45789999999998874  465443 3333222   33455555 5666666666654 3345555555554


Q ss_pred             HHh----cCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC
Q 047067          139 YAR----FDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT-HFSYSSVFTALASTGS  210 (566)
Q Consensus       139 y~~----~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~  210 (566)
                      +..    .+++++|.+.|++...   .+..+|..+...|...|++++|+..|++..+.  .|+ ..++..+...+...+.
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~  296 (472)
T 4g1t_A          219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVF  296 (472)
T ss_dssp             HHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence            444    4567788888876543   46677888888888888888888888888774  343 4445544444422111


Q ss_pred             hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067          211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKM  287 (566)
Q Consensus       211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  287 (566)
                      ..         ....       ...........+..+.|...|++..   ..+..+|..+...|...|++++|+..|++.
T Consensus       297 ~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          297 QV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Hh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence            00         0000       0001111112234567777777653   446678899999999999999999999999


Q ss_pred             HHcCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-C
Q 047067          288 LRNGIAPNQV--TFLCVLT-ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-T  362 (566)
Q Consensus       288 ~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~  362 (566)
                      ++....|...  .+..+.. ...+.|+.++|+..|....+.  .|+.......         ...+.+++++. ...| +
T Consensus       361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~  429 (472)
T 4g1t_A          361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKNGAD  429 (472)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHCC-C
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhCCCC
Confidence            8854333221  2223322 335689999999999666653  4443322222         22333444433 2234 5


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      ..+|..+...+...|++++|++.++++++++|.+|.+...++
T Consensus       430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             TTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            678999999999999999999999999999999887765544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.58  E-value=1.2e-13  Score=130.42  Aligned_cols=242  Identities=11%  Similarity=0.017  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 047067          131 VGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPT--HFSYSSVFTAL  205 (566)
Q Consensus       131 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~  205 (566)
                      ........|.+.|++++|...|++..+   .+...|..+...|...|++++|++.|++....+..|+  ...|..+...+
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            344455666666777777776666543   2344666666666677777777777666665321111  22355555666


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHH
Q 047067          206 ASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVR  282 (566)
Q Consensus       206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~  282 (566)
                      ...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+   .+...|..+...+...+++++|+.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666554 23344555555566666666666666655532   233444444422222335555555


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC---HHHHHHHHHhC--
Q 047067          283 WFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL---LDRALKFIREM--  357 (566)
Q Consensus       283 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~--  357 (566)
                      .|+++.+.  .|+                                  +...+..+...+...|+   +++|...+++.  
T Consensus       164 ~~~~a~~~--~p~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  207 (272)
T 3u4t_A          164 SFVKVLEL--KPN----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE  207 (272)
T ss_dssp             HHHHHHHH--STT----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred             HHHHHHHh--Ccc----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence            55555542  222                                  12333333344444443   33344433333  


Q ss_pred             --CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067          358 --PIEPT------AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS  409 (566)
Q Consensus       358 --~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  409 (566)
                        ...|+      ..+|..+...+...|++++|...++++++++|+++.+...+..+...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred             HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence              11122      24677788888899999999999999999999998776666555443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.56  E-value=5.7e-13  Score=135.61  Aligned_cols=369  Identities=11%  Similarity=0.005  Sum_probs=178.1

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---hHHHHHHccCCCCCcchHHHHHHHHHhCC-----CccH
Q 047067            5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCL---DEARKLFDEMPVKDMVTWTALISGYSQND-----QPEN   76 (566)
Q Consensus         5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~   76 (566)
                      .|++++|.+.+....+.|   ++..+..|..+|...|+.   ++|...|++....++..+..|...+...|     ++++
T Consensus        16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~   92 (452)
T 3e4b_A           16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHE   92 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHH
Confidence            355666666676666655   233344455555556666   66766666665555556666665444444     4556


Q ss_pred             HHHHHHHHHHCCCCCChhHHHHHHHHHccCCCch--HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----CHHHHHH
Q 047067           77 AIILFSQMLRLGLKPNQFTLSSVLKASGAGATDD--KFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD----QMDDAWF  150 (566)
Q Consensus        77 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~  150 (566)
                      |+..|++..+.|.. +  .+..+-..+...+...  ..+...+....+.|   ++.....|..+|...+    ..+.+..
T Consensus        93 A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~  166 (452)
T 3e4b_A           93 AESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVER  166 (452)
T ss_dssp             HHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred             HHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence            66666666665422 2  2333333332222211  01222222222222   2233344444444444    2223333


Q ss_pred             HHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH
Q 047067          151 LFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA  230 (566)
Q Consensus       151 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  230 (566)
                      ++......++.++..|...|.+.|..                                .+.++|...+....+.| +++.
T Consensus       167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~--------------------------------~~~~~A~~~~~~aa~~g-~~~a  213 (452)
T 3e4b_A          167 ICKAALNTTDICYVELATVYQKKQQP--------------------------------EQQAELLKQMEAGVSRG-TVTA  213 (452)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHTTCH--------------------------------HHHHHHHHHHHHHHHTT-CSCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCc--------------------------------ccHHHHHHHHHHHHHCC-CHHH
Confidence            33333333334444444444444400                                04444555555554444 3333


Q ss_pred             hHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067          231 FVGNTLVDMYAKS----GSIEDAEKVFNRLLKRDVVSWNSMLTG-C--AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL  303 (566)
Q Consensus       231 ~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  303 (566)
                      ..+..|..+|...    +++++|.+.|++....++..+..|... |  ...+++++|+.+|++..+.|   +...+..|.
T Consensus       214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg  290 (452)
T 3e4b_A          214 QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLG  290 (452)
T ss_dssp             HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            3334455555443    566667766666653355566666665 3  34677788888888777765   555566666


Q ss_pred             HHHHccC-----CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047067          304 TACSHAG-----LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR----AGLLDRALKFIREMPIEPTAAVWGALLGACR  374 (566)
Q Consensus       304 ~a~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~  374 (566)
                      ..|. .|     ++++|...|.... .   -+...+..|..+|..    ..++++|..+|++.--.-+......|...|.
T Consensus       291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          291 KLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS  365 (452)
T ss_dssp             HHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred             HHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence            6665 44     7888888885554 2   244555566666655    3478888888877621223344455555554


Q ss_pred             h----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 047067          375 M----HKNVELGAYAAERIFELDPHDSGPHILLANIYA--SAGRLNDAARARKMMKE  425 (566)
Q Consensus       375 ~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~  425 (566)
                      .    ..+.++|...++++.+.++..  +...+..+..  ..++..+|.++.++-++
T Consensus       366 ~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          366 QGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             SCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            2    457888888888888776543  3333333332  23455566666555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.56  E-value=2.1e-12  Score=120.29  Aligned_cols=206  Identities=10%  Similarity=0.013  Sum_probs=112.7

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067          160 EVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDM  239 (566)
Q Consensus       160 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  239 (566)
                      ...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+.++.+..              
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------  101 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------  101 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence            4556666666777777777777776665532 2233444444444444444444444444444432              


Q ss_pred             HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 047067          240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGY  318 (566)
Q Consensus       240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~  318 (566)
                                        ..+...|..+...|...|++++|++.|+++.+.+..| +...+..+...+...|++++|...
T Consensus       102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  163 (252)
T 2ho1_A          102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY  163 (252)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence                              1233444444555555555555555555554422223 234444555555555555555555


Q ss_pred             HHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067          319 FALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD  396 (566)
Q Consensus       319 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  396 (566)
                      +....+.. +.+...+..+...|.+.|++++|...++++ ...| +...+..+...+...|+.++|.+.++++++..|++
T Consensus       164 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          164 FEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            54433332 223455556666666666666666666665 2233 44566666666777777777777777777777766


Q ss_pred             Cch
Q 047067          397 SGP  399 (566)
Q Consensus       397 ~~~  399 (566)
                      +..
T Consensus       243 ~~~  245 (252)
T 2ho1_A          243 LEY  245 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.55  E-value=6.9e-13  Score=131.04  Aligned_cols=247  Identities=12%  Similarity=0.065  Sum_probs=193.6

Q ss_pred             ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 047067          159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS-LEQGKWVHAHVIKSGGQLVAFVGNTLV  237 (566)
Q Consensus       159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li  237 (566)
                      +...|+.+...+.+.|++++|++.|++..... +-+...|..+..++...|+ +++|...++++++.. +.+..+|..+.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            35578888888888999999999999888753 2345677778888888886 999999999988876 55677888888


Q ss_pred             HHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHH
Q 047067          238 DMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH-AGLLD  313 (566)
Q Consensus       238 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~  313 (566)
                      .+|.+.|++++|+..|+++.   ..+..+|..+..++.+.|++++|+..|+++++... -+...|+.+..++.. .|..+
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence            89999999999999998874   44778899999999999999999999999988532 257788888888888 56546


Q ss_pred             HH-----HHHHHhHHhhCCCccHHHHHHHHHHhhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--------
Q 047067          314 EG-----QGYFALMKKHGVEPEEAHYVTFVDLLGRAG--LLDRALKFIREMPIEP-TAAVWGALLGACRMHK--------  377 (566)
Q Consensus       314 ~a-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g--------  377 (566)
                      +|     ...+....... +-+...|..+..+|.+.|  ++++|.+.++++...| +...+..+...+...|        
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence            66     46775555543 335668888888888888  6889998888875455 4567888888887763        


Q ss_pred             C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHh
Q 047067          378 N-VELGAYAAERI-FELDPHDSGPHILLANIYAS  409 (566)
Q Consensus       378 ~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~  409 (566)
                      + .++|+.+++++ .+++|.....|..++..+..
T Consensus       332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            2 58999999999 89999988888877766553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.54  E-value=5.1e-12  Score=119.40  Aligned_cols=224  Identities=10%  Similarity=-0.018  Sum_probs=115.4

Q ss_pred             ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCcHhHHH
Q 047067          159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS----TGSLEQGKWVHAHVIKSGGQLVAFVGN  234 (566)
Q Consensus       159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  234 (566)
                      +..++..+...|...|++++|++.|++..+.   -+...+..+...+..    .+++++|...+.+..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4455555666666666666666666666552   233445555555555    556666666666555543   344445


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047067          235 TLVDMYAK----SGSIEDAEKVFNRLLK-RDVVSWNSMLTGCAQ----HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA  305 (566)
Q Consensus       235 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  305 (566)
                      .+..+|..    .+++++|...|++..+ .+..++..+...|..    .+++++|+..|++..+.+   +...+..+...
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  155 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence            55555555    5555555555555422 244555555555555    566666666666655543   33444444444


Q ss_pred             HHc----cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-
Q 047067          306 CSH----AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR----AGLLDRALKFIREM-PIEPTAAVWGALLGACRM-  375 (566)
Q Consensus       306 ~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~-  375 (566)
                      +..    .+++++|...|+...+.+   +...+..+..+|..    .+++++|.+.+++. ... +...+..+...+.. 
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g  231 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG  231 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence            444    555555555554443332   22334444444444    55555555555444 111 13344444444444 


Q ss_pred             ---cCCHHHHHHHHHHHHhcCCC
Q 047067          376 ---HKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       376 ---~g~~~~a~~~~~~~~~~~p~  395 (566)
                         .++.++|...++++++++|+
T Consensus       232 ~~~~~~~~~A~~~~~~a~~~~~~  254 (273)
T 1ouv_A          232 EGVTRNEKQAIENFKKGCKLGAK  254 (273)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CCcccCHHHHHHHHHHHHHcCCH
Confidence               45555555555555555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.54  E-value=4.5e-12  Score=119.77  Aligned_cols=224  Identities=9%  Similarity=-0.036  Sum_probs=194.8

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHH
Q 047067          194 THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK----SGSIEDAEKVFNRLLK-RDVVSWNSML  268 (566)
Q Consensus       194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li  268 (566)
                      +..++..+...+...|++++|...+.+..+.   .+...+..+..+|..    .|++++|...|++..+ .+..++..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5567778888899999999999999999983   355677889999999    9999999999998743 4788899999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067          269 TGCAQ----HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH----AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL  340 (566)
Q Consensus       269 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  340 (566)
                      ..|..    .+++++|+..|++..+.+   +...+..+...+..    .+++++|...|+...+.+   +...+..+...
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  155 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence            99999    999999999999999875   77888889999998    999999999997777765   45667778888


Q ss_pred             hhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 047067          341 LGR----AGLLDRALKFIREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDSGPHILLANIYAS---  409 (566)
Q Consensus       341 ~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  409 (566)
                      |..    .+++++|...+++.--..+...+..+...+..    .+++++|...++++++.+|  +..+..++.+|..   
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~  233 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG  233 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence            888    99999999999987212366788888899999    9999999999999999877  5688999999999   


Q ss_pred             -cCChhHHHHHHHHHHhCCC
Q 047067          410 -AGRLNDAARARKMMKESGV  428 (566)
Q Consensus       410 -~g~~~~a~~~~~~m~~~g~  428 (566)
                       .+++++|.+.+++..+.|.
T Consensus       234 ~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          234 VTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             SSCCSTTHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHHHHcCC
Confidence             9999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.54  E-value=1.3e-12  Score=118.90  Aligned_cols=192  Identities=14%  Similarity=-0.020  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067          161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY  240 (566)
Q Consensus       161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  240 (566)
                      ..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..+|
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY   83 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            344444445555555555555555544432 2233444444444455555555555555554443 33344444455555


Q ss_pred             Hhc-----------CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067          241 AKS-----------GSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC  306 (566)
Q Consensus       241 ~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  306 (566)
                      .+.           |++++|+..|++..   ..+...|..+...|...|++++|+..|++.++..  .+...+..+..++
T Consensus        84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~  161 (217)
T 2pl2_A           84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY  161 (217)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence            555           66666666666552   2345566666666667777777777777766654  4566666666666


Q ss_pred             HccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          307 SHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      ...|++++|...|+...+.. +.+...+..+...+.+.|++++|...+++.
T Consensus       162 ~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          162 LSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            66677777776665544432 224455666666666666666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=1.2e-12  Score=121.85  Aligned_cols=197  Identities=9%  Similarity=-0.045  Sum_probs=169.0

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067          230 AFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTAC  306 (566)
Q Consensus       230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  306 (566)
                      ...+..+...|...|++++|.+.|+++.   ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            4566777788888888888888888763   3467788999999999999999999999998863 33677888999999


Q ss_pred             HccCCHHHHHHHHHhHHhhCCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 047067          307 SHAGLLDEGQGYFALMKKHGVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGA  383 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~  383 (566)
                      ...|++++|..++..+...+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999997666533344 5677888999999999999999999987 3334 5788999999999999999999


Q ss_pred             HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       384 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ..++++++..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999998754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=4.3e-13  Score=124.09  Aligned_cols=142  Identities=17%  Similarity=0.131  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL  340 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  340 (566)
                      ..+|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  168 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMC  168 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            3444445555555555555555555554432 1234444455555555555555555554333322 2234455555555


Q ss_pred             hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          341 LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       341 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      |.+.|++++|.+.++++ ...| +..+|..+..++...|++++|...+++++++.|+++.++..+.
T Consensus       169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  234 (243)
T 2q7f_A          169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK  234 (243)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence            66666666666666554 1122 3456666666666666666666666666666666655554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=2.7e-12  Score=117.02  Aligned_cols=196  Identities=11%  Similarity=0.045  Sum_probs=131.6

Q ss_pred             cHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047067          229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA  305 (566)
Q Consensus       229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  305 (566)
                      +..++..+...|...|++++|.+.|+++.   ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            34455556666666666666666666552   2345566667777777777777777777776642 2245666667777


Q ss_pred             HHcc-CCHHHHHHHHHhHHhhCCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047067          306 CSHA-GLLDEGQGYFALMKKHGVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVEL  381 (566)
Q Consensus       306 ~~~~-g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~  381 (566)
                      +... |++++|...++.+.+.+..| +...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            7777 77777777775544422222 2456666777777777777777777766 2233 45677777777777788888


Q ss_pred             HHHHHHHHHhcCC-CCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          382 GAYAAERIFELDP-HDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       382 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      |...++++++..| .++..+..++..+...|+.++|..+++.+.+
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            8888888877777 7777777777777777888877777777765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.52  E-value=5.5e-12  Score=114.91  Aligned_cols=211  Identities=9%  Similarity=-0.001  Sum_probs=128.7

Q ss_pred             ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067          159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD  238 (566)
Q Consensus       159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  238 (566)
                      +...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...++.+.+..             
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------   72 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------   72 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence            34456666666666666666666666665532 2233444444444444444444444444444432             


Q ss_pred             HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 047067          239 MYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH-GLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       239 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~  316 (566)
                                         ..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|.
T Consensus        73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  133 (225)
T 2vq2_A           73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE  133 (225)
T ss_dssp             -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence                               22445555566666666 666666666666665322233 455666666666777777777


Q ss_pred             HHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067          317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE--PTAAVWGALLGACRMHKNVELGAYAAERIFELD  393 (566)
Q Consensus       317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  393 (566)
                      ..+..+.+.. +.+...+..+...|.+.|++++|.+.++++ ...  .+...+..+...+...|+.+.+...++.+.+..
T Consensus       134 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          134 AYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            7775544432 223566677777777888888888877776 222  355667777777788888888888888888888


Q ss_pred             CCCCchHHHH
Q 047067          394 PHDSGPHILL  403 (566)
Q Consensus       394 p~~~~~~~~l  403 (566)
                      |+++.....+
T Consensus       213 p~~~~~~~~l  222 (225)
T 2vq2_A          213 PYSEELQTVL  222 (225)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHHHh
Confidence            8887554433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.51  E-value=1.2e-12  Score=129.23  Aligned_cols=226  Identities=14%  Similarity=0.117  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHHhcC---CCChhHHHHHHHHH
Q 047067          196 FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGS-IEDAEKVFNRLL---KRDVVSWNSMLTGC  271 (566)
Q Consensus       196 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~  271 (566)
                      ..|..+..++...|++++|...+.++++.. +.+..+|+.+..+|.+.|+ +++|+..|+++.   ..+...|+.+..++
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            456777778889999999999999999987 5678889999999999997 999999999984   44788999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh-cCCHHHH
Q 047067          272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR-AGLLDRA  350 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A  350 (566)
                      ...|++++|+..|+++++.. +-+...|..+..++...|++++|...++.+.+.. +-+...|+.+..+|.+ .|..++|
T Consensus       177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence            99999999999999999953 2267889999999999999999999997777765 3467788999999999 6665777


Q ss_pred             -----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------C
Q 047067          351 -----LKFIREM-PIEP-TAAVWGALLGACRMHK--NVELGAYAAERIFELDPHDSGPHILLANIYASAG---------R  412 (566)
Q Consensus       351 -----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------~  412 (566)
                           ++.+++. .+.| +...|..+...+...|  ++++|+..++++ +.+|+++.++..++.+|.+.|         .
T Consensus       255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~  333 (382)
T 2h6f_A          255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI  333 (382)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence                 4777766 4456 5679999999998888  689999999998 899999999999999999875         3


Q ss_pred             hhHHHHHHHHH-Hh
Q 047067          413 LNDAARARKMM-KE  425 (566)
Q Consensus       413 ~~~a~~~~~~m-~~  425 (566)
                      +++|.++++++ .+
T Consensus       334 ~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          334 LNKALELCEILAKE  347 (382)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            58999999998 55

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.51  E-value=8.4e-13  Score=122.11  Aligned_cols=199  Identities=10%  Similarity=0.114  Sum_probs=155.3

Q ss_pred             CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067          227 QLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL  303 (566)
Q Consensus       227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  303 (566)
                      ......+..+...+...|++++|...|+++.+   .+...|..+...|...|++++|+..|+++.+.. +.+...+..+.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            34455667778888889999999999988743   367888999999999999999999999998863 33678888999


Q ss_pred             HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047067          304 TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVEL  381 (566)
Q Consensus       304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~  381 (566)
                      ..+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999997766654 346778888999999999999999999987 3334 67889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          382 GAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       382 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      |+..++++++..|+++.++..++.+|...|++++|...++++.+..
T Consensus       178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999998743

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.51  E-value=3.1e-12  Score=130.14  Aligned_cols=342  Identities=11%  Similarity=0.005  Sum_probs=209.3

Q ss_pred             HHHHHHhcCChhHHHHHHccCCC-CCcchHHHHHHHHHhCCCc---cHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCC
Q 047067           33 ILNAYAKCGCLDEARKLFDEMPV-KDMVTWTALISGYSQNDQP---ENAIILFSQMLRLGLKPNQFTLSSVLKASGAGAT  108 (566)
Q Consensus        33 li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~  108 (566)
                      +...+.+.|++++|.+.|++... .++..+..|...|...|++   ++|+.+|++..+.    +                
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~----------------   68 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----S----------------   68 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------------------------
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----C----------------
Confidence            34445556666666666665432 2444555555555555555   5666666555432    2                


Q ss_pred             chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCC-ChHHHHHHHHHHHhCCChh---HH
Q 047067          109 DDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFD-----QMDDAWFLFTALESK-NEVSWNALIAGHARKSEGE---KA  179 (566)
Q Consensus       109 ~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A  179 (566)
                                          +..+..|..++...+     +.++|.+.|++..++ +..++..|...|...+..+   ++
T Consensus        69 --------------------~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a  128 (452)
T 3e4b_A           69 --------------------PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNA  128 (452)
T ss_dssp             ----------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCH
T ss_pred             --------------------HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHH
Confidence                                222223333222222     445555555554432 3335555555555544432   34


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhc
Q 047067          180 LRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG---SIEDAEKVFNRL  256 (566)
Q Consensus       180 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~  256 (566)
                      ++.+......|   +......+...+...+.++.+......+.+.-...++..+..|..+|.+.|   +.++|.+.|++.
T Consensus       129 ~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a  205 (452)
T 3e4b_A          129 QQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG  205 (452)
T ss_dssp             HHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence            44555544444   234455556666666655544444333333322334447788999999999   999999999987


Q ss_pred             CC---CChhHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHhHHhhC
Q 047067          257 LK---RDVVSWNSMLTGCAQH----GLGKATVRWFEKMLRNGIAPNQVTFLCVLTA-C--SHAGLLDEGQGYFALMKKHG  326 (566)
Q Consensus       257 ~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~  326 (566)
                      .+   ++...+..+...|...    +++++|+.+|++.. .|   +...+..|... +  ...+++++|...|+...+.|
T Consensus       206 a~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          206 VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             HHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence            43   3444457777777655    79999999999988 33   44555566655 3  56899999999997777766


Q ss_pred             CCccHHHHHHHHHHhhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCC
Q 047067          327 VEPEEAHYVTFVDLLGRAG-----LLDRALKFIREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       327 ~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                         +...+..|..+|. .|     ++++|.++|++.- .-+...+..|...|..    ..+.++|...++++.+.  .++
T Consensus       282 ---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~  354 (452)
T 3e4b_A          282 ---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQN  354 (452)
T ss_dssp             ---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCT
T ss_pred             ---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChH
Confidence               5566677777777 55     9999999999997 5577888888877766    44999999999998875  456


Q ss_pred             chHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 047067          398 GPHILLANIYAS----AGRLNDAARARKMMKESGV  428 (566)
Q Consensus       398 ~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~  428 (566)
                      .+...|+.+|..    ..+.++|...+++..+.|.
T Consensus       355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence            688999999985    4589999999999988775

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=2.1e-12  Score=121.70  Aligned_cols=225  Identities=9%  Similarity=-0.002  Sum_probs=162.5

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHH
Q 047067          200 SVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--RD----VVSWNSMLTGCAQ  273 (566)
Q Consensus       200 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~  273 (566)
                      .....+...|++++|...+..+++.. +.+...+..+...|...|++++|...|++..+  ++    ..+|..+...|..
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            34445555566666666666665543 23344556666677777777777777776633  22    2347788888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHH
Q 047067          274 HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKF  353 (566)
Q Consensus       274 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  353 (566)
                      .|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.
T Consensus        87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888753 2245788888888889999999999986665542 33456676677334445599999999


Q ss_pred             HHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhcCChhHHHHHH
Q 047067          354 IREM-PIEP-TAAVWGALLGACRMHKN---VELGAYAAERIFELD---PHD-----SGPHILLANIYASAGRLNDAARAR  420 (566)
Q Consensus       354 ~~~~-~~~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~  420 (566)
                      |+++ ...| +...|..+..++...|+   .++|...+++++++.   |+.     ..+|..++.+|...|++++|...+
T Consensus       165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  244 (272)
T 3u4t_A          165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW  244 (272)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9887 4445 46778888888888888   888999999999865   442     247888999999999999999999


Q ss_pred             HHHHhCC
Q 047067          421 KMMKESG  427 (566)
Q Consensus       421 ~~m~~~g  427 (566)
                      +++.+..
T Consensus       245 ~~al~~~  251 (272)
T 3u4t_A          245 KNILALD  251 (272)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998743

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.49  E-value=5.3e-13  Score=134.22  Aligned_cols=257  Identities=11%  Similarity=0.013  Sum_probs=154.2

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCcHhHHHHH
Q 047067          167 IAGHARKSEGEKALRTFSEMLREGFEPT-H----FSYSSVFTALASTGSLEQGKWVHAHVIKS----G-GQLVAFVGNTL  236 (566)
Q Consensus       167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l  236 (566)
                      ...+...|++++|+..|+++.+.+  |+ .    ..+..+...+...|++++|...+.++++.    + .+....++..+
T Consensus        55 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           55 GERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            334444444455544444444431  11 1    23344444444445555555544444332    0 11223344555


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHc
Q 047067          237 VDMYAKSGSIEDAEKVFNRLLKR---------DVVSWNSMLTGCAQHGL-----------------GKATVRWFEKMLRN  290 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~  290 (566)
                      ...|...|++++|...|++....         ...+|..+...|...|+                 +++|+..+++..+.
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            55566666666666655554211         23356666666666676                 67777666665442


Q ss_pred             ----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-Ccc----HHHHHHHHHHhhhcCCHHHHHHHHHhC---
Q 047067          291 ----GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPE----EAHYVTFVDLLGRAGLLDRALKFIREM---  357 (566)
Q Consensus       291 ----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---  357 (566)
                          +-.| ...++..+...+...|++++|...+....+... .++    ...+..+...|...|++++|...+++.   
T Consensus       213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence                1111 134666677777778888888777744433210 011    236677788888888888888888766   


Q ss_pred             -CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          358 -PIEP----TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       358 -~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                       +-..    ...++..+...+...|++++|...+++++++.+..      ..++..++.+|...|++++|...+++..+
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             1011    14577788888999999999999999998764332      34788899999999999999999998875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.49  E-value=1.3e-12  Score=130.76  Aligned_cols=262  Identities=13%  Similarity=0.057  Sum_probs=152.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CC-CCcHhHH
Q 047067          163 WNALIAGHARKSEGEKALRTFSEMLREGFEPT----HFSYSSVFTALASTGSLEQGKWVHAHVIKS----GG-QLVAFVG  233 (566)
Q Consensus       163 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~  233 (566)
                      +......+...|++++|+..|++....+ +.+    ...+..+...+...|++++|...+.++++.    +. +....++
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   90 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   90 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            3334444444455555555554444431 111    123334444444455555555544444322    11 1113344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 047067          234 NTLVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGL--------------------GKATVRWF  284 (566)
Q Consensus       234 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~  284 (566)
                      ..+...|...|++++|...|++..+     .+    ..++..+...|...|+                    +++|+..+
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            5555556666666666665555421     11    2356666666666676                    67777766


Q ss_pred             HHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC-CCcc----HHHHHHHHHHhhhcCCHHHHHHHH
Q 047067          285 EKMLRN----GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHG-VEPE----EAHYVTFVDLLGRAGLLDRALKFI  354 (566)
Q Consensus       285 ~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~  354 (566)
                      ++..+.    +..| ...++..+...+...|++++|...+....+.. -.++    ...+..+...|...|++++|...+
T Consensus       171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  250 (406)
T 3sf4_A          171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  250 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            665442    1111 13456666677777778877777774433221 0111    236677777888888888888887


Q ss_pred             HhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHHHHHH
Q 047067          355 REM----PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHILLANIYASAGRLNDAARAR  420 (566)
Q Consensus       355 ~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~  420 (566)
                      ++.    +-.++    ..++..+...+...|++++|...+++++++.+..      ..++..++.+|...|++++|...+
T Consensus       251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  330 (406)
T 3sf4_A          251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA  330 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            765    11112    4567777888888888999988888888764332      446778888899999999999888


Q ss_pred             HHHHh
Q 047067          421 KMMKE  425 (566)
Q Consensus       421 ~~m~~  425 (566)
                      ++..+
T Consensus       331 ~~al~  335 (406)
T 3sf4_A          331 EKHLE  335 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.49  E-value=8.3e-13  Score=124.67  Aligned_cols=240  Identities=8%  Similarity=-0.117  Sum_probs=167.1

Q ss_pred             hcCCHHHHHHHHHhCCCC-------ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067          141 RFDQMDDAWFLFTALESK-------NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ  213 (566)
Q Consensus       141 ~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~  213 (566)
                      ..|++++|...|+++.+.       +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            346677787777776542       35577788888888888888888888887753 3356777888888888888888


Q ss_pred             HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047067          214 GKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG  291 (566)
Q Consensus       214 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  291 (566)
                      |...+..+++.. +.+..++..+..+|.+.|++++|...|+++.  .|+...+...+..+...|++++|+..+++.....
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            888888888775 4456777888888888888888888888873  3333334444445566788999999998877752


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC--c-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 047067          292 IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE--P-EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAAVWG  367 (566)
Q Consensus       292 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~  367 (566)
                       +++...+ .++..+...++.++|...+.........  | +...+..+...|.+.|++++|...|+++ ...|+.  +.
T Consensus       175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~  250 (275)
T 1xnf_A          175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FV  250 (275)
T ss_dssp             -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CH
T ss_pred             -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HH
Confidence             3343343 3666777778888888888554432211  1 1467788889999999999999999887 556633  22


Q ss_pred             HHHHHHHhcCCHHHHHHHH
Q 047067          368 ALLGACRMHKNVELGAYAA  386 (566)
Q Consensus       368 ~ll~~~~~~g~~~~a~~~~  386 (566)
                      ....++...|++++|++.+
T Consensus       251 ~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          251 EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhhHHHH
Confidence            2344566667777776665

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.48  E-value=2.6e-12  Score=124.74  Aligned_cols=261  Identities=14%  Similarity=0.068  Sum_probs=165.7

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CC-CCcHhHHHH
Q 047067          165 ALIAGHARKSEGEKALRTFSEMLREGFEPT----HFSYSSVFTALASTGSLEQGKWVHAHVIKS----GG-QLVAFVGNT  235 (566)
Q Consensus       165 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~  235 (566)
                      .....+...|++++|+..|+++.+.. +.+    ...+..+...+...|++++|...+.++++.    +. +....++..
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            33444555555555555555555432 111    134444555555555555555555554332    11 112345556


Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 047067          236 LVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGL--------------------GKATVRWFEK  286 (566)
Q Consensus       236 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~  286 (566)
                      +...|...|++++|...|++..+     .+    ..++..+...|...|+                    +++|+..+++
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            66666677777777766665421     11    2366667777777777                    7777777776


Q ss_pred             HHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh----CCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067          287 MLRN----GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKH----GVEP-EEAHYVTFVDLLGRAGLLDRALKFIRE  356 (566)
Q Consensus       287 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (566)
                      ....    +..| ...++..+...+...|++++|...+....+.    +..+ ....+..+...|...|++++|.+.+++
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  248 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  248 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5442    1111 1346667777788888888888888444322    1111 133677788888899999999888877


Q ss_pred             C----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHHHHHHHH
Q 047067          357 M----PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHILLANIYASAGRLNDAARARKM  422 (566)
Q Consensus       357 ~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~  422 (566)
                      .    +-.++    ..++..+...+...|++++|...+++++++.|..      ..++..++.+|...|++++|...+++
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            6    11122    4577788888999999999999999998765432      34777899999999999999999999


Q ss_pred             HHhC
Q 047067          423 MKES  426 (566)
Q Consensus       423 m~~~  426 (566)
                      ..+.
T Consensus       329 a~~~  332 (338)
T 3ro2_A          329 HLEI  332 (338)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.48  E-value=4.9e-12  Score=111.67  Aligned_cols=164  Identities=13%  Similarity=0.077  Sum_probs=126.2

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHH
Q 047067          260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFV  338 (566)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  338 (566)
                      ++..|..+...|.+.|++++|++.|++.++.  .| +..++..+..++.+.|++++|...+....... +.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence            4556777777777777777777777777764  33 45667777777777777777777775554443 23455666677


Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067          339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA  416 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  416 (566)
                      ..+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|.++.++..++.+|.+.|++++|
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            7778888888888888776 3334 5678888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 047067          417 ARARKMMKES  426 (566)
Q Consensus       417 ~~~~~~m~~~  426 (566)
                      .+.+++..+.
T Consensus       161 ~~~~~~al~~  170 (184)
T 3vtx_A          161 VKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999988764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=8.7e-13  Score=135.13  Aligned_cols=193  Identities=10%  Similarity=0.037  Sum_probs=150.0

Q ss_pred             CcHhHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047067          228 LVAFVGNTLVDMYAKSGSI-EDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVL  303 (566)
Q Consensus       228 ~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  303 (566)
                      .+...+..+...|...|++ ++|++.|++..   ..+...|..+...|...|++++|+..|++..+  ..|+...+..+.
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg  177 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS  177 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence            3455555566666666666 66666666552   23466777777777788888888888888777  356677777777


Q ss_pred             HHHHcc---------CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc--------CCHHHHHHHHHhC-CCCC----
Q 047067          304 TACSHA---------GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA--------GLLDRALKFIREM-PIEP----  361 (566)
Q Consensus       304 ~a~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p----  361 (566)
                      .++...         |++++|...++...+.. +.+...|..+..+|...        |++++|.+.|++. .+.|    
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  256 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS  256 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence            778777         88888888886666543 33566777888888887        8899999999887 4455    


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      +...|..+..++...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus       257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            67899999999999999999999999999999999999999999999999999998765443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.45  E-value=1.5e-12  Score=130.40  Aligned_cols=287  Identities=11%  Similarity=0.018  Sum_probs=196.6

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-C----hHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-H
Q 047067          128 NVYVGSSLLDMYARFDQMDDAWFLFTALES--K-N----EVSWNALIAGHARKSEGEKALRTFSEMLRE----GFEPT-H  195 (566)
Q Consensus       128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~  195 (566)
                      ....+..+...+.+.|++++|...|++..+  + +    ..+|..+...|...|++++|+..|++....    +-.|. .
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            334445566667777777777777776543  2 2    245667777777777777777777765432    11121 3


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCcHhHHHHHHHHHHhcCC--------------------HHHHH
Q 047067          196 FSYSSVFTALASTGSLEQGKWVHAHVIKSGG-----QLVAFVGNTLVDMYAKSGS--------------------IEDAE  250 (566)
Q Consensus       196 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~--------------------~~~A~  250 (566)
                      .++..+...+...|++++|...+.++++...     .....++..+...|...|+                    +++|.
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            4556666677777777777777776655311     1113466777788888888                    88888


Q ss_pred             HHHHhcCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHH
Q 047067          251 KVFNRLLK-----R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI-APN----QVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       251 ~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~  316 (566)
                      +.|++...     .    ...+|..+...|...|++++|+..+++..+... .++    ..++..+...+...|++++|.
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            77776521     1    234678888889999999999999988775311 112    347778888899999999999


Q ss_pred             HHHHhHHhh----CCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 047067          317 GYFALMKKH----GVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM----PIEPT----AAVWGALLGACRMHKNVELGA  383 (566)
Q Consensus       317 ~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~  383 (566)
                      ..+......    +..+. ..++..+...|.+.|++++|...+++.    +..++    ..++..+...+...|++++|.
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            988554432    11111 457788889999999999999998876    11122    457788888999999999999


Q ss_pred             HHHHHHHhcCC------CCCchHHHHHHHHHhcCChh
Q 047067          384 YAAERIFELDP------HDSGPHILLANIYASAGRLN  414 (566)
Q Consensus       384 ~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~  414 (566)
                      ..+++++++.+      ....++..++.+|...|+..
T Consensus       328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            99999987632      23456777888888877664

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.42  E-value=6.9e-10  Score=116.98  Aligned_cols=416  Identities=9%  Similarity=-0.023  Sum_probs=259.9

Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCC---ccHHHHHHHHH
Q 047067           11 ARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQ---PENAIILFSQM   84 (566)
Q Consensus        11 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m   84 (566)
                      -...++..++.+ +.|...|..++....+.+.++.|+.+|+.+.   +.....|..-+..-.+.|.   ++.+..+|++.
T Consensus        51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa  129 (679)
T 4e6h_A           51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC  129 (679)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence            344566666665 5789999999999999999999999999876   4456678888888888888   99999999998


Q ss_pred             HHCC-CCCChhHHHHHHHHHccCCCc----h---HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHh---------cCC
Q 047067           85 LRLG-LKPNQFTLSSVLKASGAGATD----D---KFGRQVHAFCLKY-GY-DWN-VYVGSSLLDMYAR---------FDQ  144 (566)
Q Consensus        85 ~~~g-~~p~~~t~~~ll~a~~~~~~~----~---~~~~~i~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~  144 (566)
                      +... ..|+...|..-+.-..+.++.    .   ...+++|+.++.. |. .++ ..+|...+.....         .++
T Consensus       130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~  209 (679)
T 4e6h_A          130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR  209 (679)
T ss_dssp             TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence            8753 247887777766554443332    1   1455777776654 65 553 5678877776542         345


Q ss_pred             HHHHHHHHHhCCC-C--C-hHHHHH---HHHHHH----------hCCChhHHHHHHHHHHH--CCCC-------------
Q 047067          145 MDDAWFLFTALES-K--N-EVSWNA---LIAGHA----------RKSEGEKALRTFSEMLR--EGFE-------------  192 (566)
Q Consensus       145 ~~~A~~~f~~~~~-~--~-~~~~~~---li~~~~----------~~g~~~~A~~~~~~m~~--~g~~-------------  192 (566)
                      ++.++++|++... |  + ..+|..   +.....          ...+++.|...+.++..  .++.             
T Consensus       210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~  289 (679)
T 4e6h_A          210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES  289 (679)
T ss_dssp             HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence            7888999988764 2  1 123322   221110          01122334444444321  1110             


Q ss_pred             --C-----C---HHHHHHHHHHHhccC-------ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHH
Q 047067          193 --P-----T---HFSYSSVFTALASTG-------SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE-KVFN  254 (566)
Q Consensus       193 --p-----d---~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~  254 (566)
                        |     +   ...|...+.---..+       ..+....+|++++..- +.+..+|-..+..+...|+.++|. ++|+
T Consensus       290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~  368 (679)
T 4e6h_A          290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK  368 (679)
T ss_dssp             TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence              1     1   123444443332222       1233556777777653 456677777777777778877775 7777


Q ss_pred             hcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHHccC
Q 047067          255 RLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI---------APN------------QVTFLCVLTACSHAG  310 (566)
Q Consensus       255 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g  310 (566)
                      +..   ..+...|-..+...-+.|++++|.++|+++++...         .|+            ...|...+....+.|
T Consensus       369 rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~  448 (679)
T 4e6h_A          369 LGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ  448 (679)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence            763   33555677777777778888888888888776310         132            235666667667777


Q ss_pred             CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047067          311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG-LLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAE  387 (566)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  387 (566)
                      ..+.|..+|....+....+....|...+.+-.+.+ +.+.|..+|+..  ....+...|...+.-....|+.+.|..+|+
T Consensus       449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfe  528 (679)
T 4e6h_A          449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFE  528 (679)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            88888888865554311112334443333334443 478888888766  222355667777777777788888888888


Q ss_pred             HHHhcCCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          388 RIFELDPH---DSGPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       388 ~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      ++++..|+   ....+...+..-.+.|..+.+.++.+++.+.-.
T Consensus       529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP  572 (679)
T ss_dssp             HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88877663   334566666767777888888888888876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.41  E-value=1.2e-11  Score=123.20  Aligned_cols=224  Identities=9%  Similarity=-0.034  Sum_probs=151.3

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHh----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C-----ChhHHH
Q 047067          201 VFTALASTGSLEQGKWVHAHVIKS----GGQL-VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----R-----DVVSWN  265 (566)
Q Consensus       201 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~  265 (566)
                      ....+...|++++|...+.++.+.    +-++ ...++..+...|...|++++|...+++..+     +     ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            444556777777777777777653    1111 235667777778888888887777776521     1     134677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHhHHhh----CC-CccHHHHH
Q 047067          266 SMLTGCAQHGLGKATVRWFEKMLRNGIA-PN----QVTFLCVLTACSHAGLLDEGQGYFALMKKH----GV-EPEEAHYV  335 (566)
Q Consensus       266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~  335 (566)
                      .+...|...|++++|+..|++..+.... ++    ..++..+...|...|++++|...+....+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            7788888888888888888877653111 11    246777888888888888888888555542    33 33455677


Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC-CC-----CCCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067          336 TFVDLLGRAGLLDRALKFIREM-PI-----EPTA-AVWGALLGACRMHKN---VELGAYAAERIFELDPHDSGPHILLAN  405 (566)
Q Consensus       336 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p~~-~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~  405 (566)
                      .+...|.+.|++++|.+.+++. .+     .|.. ..+..+...+...|+   .++|+..+++. ...|.....+..++.
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~  347 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK  347 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence            7888888888888888888776 11     2222 234566667777787   66666666665 223444457778899


Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 047067          406 IYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       406 ~~~~~g~~~~a~~~~~~m~~  425 (566)
                      +|...|++++|...+++..+
T Consensus       348 ~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999888865

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.41  E-value=1.7e-10  Score=111.00  Aligned_cols=218  Identities=11%  Similarity=0.082  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 047067          177 EKALRTFSEMLREGFEPTHFSYSSVFTALA-------STGSL-------EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK  242 (566)
Q Consensus       177 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  242 (566)
                      ++|+.+|++..... +-+...|...+..+.       ..|++       ++|..++++.++.-.+.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            46666777766532 234445555555443       34664       6777777777763224455677777777777


Q ss_pred             cCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHH
Q 047067          243 SGSIEDAEKVFNRLLK--R-DVV-SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS-HAGLLDEGQG  317 (566)
Q Consensus       243 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~  317 (566)
                      .|++++|.++|++..+  | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            7788888877777642  2 333 67777777777888888888888877743 223344433332222 2578888888


Q ss_pred             HHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          318 YFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-P---IEP--TAAVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       318 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      +|+...+.. +.+...|..++..+.+.|++++|..+|++. .   +.|  ....|..++......|+.+.|..+++++++
T Consensus       191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            885554432 235667777777777888888888888776 2   344  356777777777778888888888888888


Q ss_pred             cCCCCC
Q 047067          392 LDPHDS  397 (566)
Q Consensus       392 ~~p~~~  397 (566)
                      ..|+++
T Consensus       270 ~~p~~~  275 (308)
T 2ond_A          270 AFREEY  275 (308)
T ss_dssp             HTTTTT
T ss_pred             Hccccc
Confidence            777754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.41  E-value=2e-12  Score=129.95  Aligned_cols=265  Identities=12%  Similarity=0.018  Sum_probs=195.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCC--C-Ch----HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CC-CCCHHHH
Q 047067          131 VGSSLLDMYARFDQMDDAWFLFTALES--K-NE----VSWNALIAGHARKSEGEKALRTFSEMLRE----GF-EPTHFSY  198 (566)
Q Consensus       131 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~t~  198 (566)
                      .+..+...+...|++++|...|++..+  + +.    ..|..+...|...|++++|+..|++....    +- .....++
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            344566677888888888888887653  2 32    46778888888888888888888877543    11 1223566


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHhC-----CCCcHhHHHHHHHHHHhcCC-----------------HHHHHHHHHhc
Q 047067          199 SSVFTALASTGSLEQGKWVHAHVIKSG-----GQLVAFVGNTLVDMYAKSGS-----------------IEDAEKVFNRL  256 (566)
Q Consensus       199 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~  256 (566)
                      ..+...+...|++++|...+.++++..     .+....++..+...|...|+                 +++|.+.|++.
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  209 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN  209 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            677778888888888888888776541     12334577788888999999                 88888888775


Q ss_pred             CC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHhH
Q 047067          257 LK-----R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PN----QVTFLCVLTACSHAGLLDEGQGYFALM  322 (566)
Q Consensus       257 ~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~  322 (566)
                      .+     .    ...+|..+...|...|++++|+..|++..+.... ++    ..++..+...+...|++++|...++..
T Consensus       210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (411)
T 4a1s_A          210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT  289 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            32     1    2357888889999999999999999988763111 12    237788888999999999999999554


Q ss_pred             HhhCCC-----ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047067          323 KKHGVE-----PEEAHYVTFVDLLGRAGLLDRALKFIREM-PI---EPT----AAVWGALLGACRMHKNVELGAYAAERI  389 (566)
Q Consensus       323 ~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~  389 (566)
                      ......     .....+..+...|...|++++|...+++. .+   .++    ..++..+...+...|++++|...++++
T Consensus       290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            432111     12467788899999999999999999876 11   112    347788889999999999999999999


Q ss_pred             HhcCCC
Q 047067          390 FELDPH  395 (566)
Q Consensus       390 ~~~~p~  395 (566)
                      +++.+.
T Consensus       370 l~~~~~  375 (411)
T 4a1s_A          370 LQLAXX  375 (411)
T ss_dssp             HHHCCH
T ss_pred             HHHHhh
Confidence            987653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.41  E-value=1.6e-11  Score=108.38  Aligned_cols=168  Identities=10%  Similarity=0.071  Sum_probs=138.9

Q ss_pred             CcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047067          228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLT  304 (566)
Q Consensus       228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  304 (566)
                      .+..+|..+...|.+.|++++|++.|++..   ..++.+|..+...|.+.|++++|+..+.+..... +-+...+..+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            356778888889999999999999998873   3467888899999999999999999999988753 224667777778


Q ss_pred             HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047067          305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELG  382 (566)
Q Consensus       305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a  382 (566)
                      .+...++++.+...+....... +.+...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|++++|
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            8888999999999996666543 345677888999999999999999999887 4455 567899999999999999999


Q ss_pred             HHHHHHHHhcCCCCC
Q 047067          383 AYAAERIFELDPHDS  397 (566)
Q Consensus       383 ~~~~~~~~~~~p~~~  397 (566)
                      +..++++++++|+++
T Consensus       161 ~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          161 VKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhCCccCH
Confidence            999999999999764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.37  E-value=2.8e-12  Score=123.29  Aligned_cols=161  Identities=15%  Similarity=0.173  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------C-CC
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLRE-------GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS------G-GQ  227 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~  227 (566)
                      +|..+...|...|++++|+.+|+++...       ..+.....+..+...+...|++++|...+.++++.      + .+
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            3444444444444444444444444331       11112233334444444444444444444444332      1 11


Q ss_pred             CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 047067          228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----------RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN------  290 (566)
Q Consensus       228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------  290 (566)
                      ....++..+...|...|++++|...|++..+           ....+|..+...|...|++++|++.|+++.+.      
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  188 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG  188 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence            1233444445555555555555555444321           01234555555555566666666666555442      


Q ss_pred             CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhH
Q 047067          291 GIAPN-QVTFLCVLTACSHAGLLDEGQGYFALM  322 (566)
Q Consensus       291 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~  322 (566)
                      +..|+ ..++..+...+...|++++|...+..+
T Consensus       189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  221 (311)
T 3nf1_A          189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI  221 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            11222 234455555555556666665555333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.37  E-value=1.4e-11  Score=131.46  Aligned_cols=163  Identities=16%  Similarity=0.121  Sum_probs=130.2

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHH
Q 047067          260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFV  338 (566)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  338 (566)
                      +..+|+.|...|.+.|++++|++.|++.++.  .|+ ..++..+..++.+.|++++|...|+...+.. +-+...|..+.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            3456777777777777788888887777773  444 5677777777888888888888886655543 23466778888


Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067          339 DLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA  416 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  416 (566)
                      .+|.+.|++++|.+.|++. .+.| +...|+.+..++...|++++|+..++++++++|+++.++..|+.+|...|+|++|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            8888888888888888877 4456 4678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 047067          417 ARARKMMKE  425 (566)
Q Consensus       417 ~~~~~~m~~  425 (566)
                      .+.+++..+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998888754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.37  E-value=1.3e-11  Score=119.70  Aligned_cols=263  Identities=12%  Similarity=0.035  Sum_probs=178.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCCC--C-C----hHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHH
Q 047067          133 SSLLDMYARFDQMDDAWFLFTALES--K-N----EVSWNALIAGHARKSEGEKALRTFSEMLRE----GFEP-THFSYSS  200 (566)
Q Consensus       133 ~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~  200 (566)
                      ......+.+.|++++|...|++..+  + +    ...|..+...|...|++++|++.+++....    +..| ...++..
T Consensus         9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A            9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            3445566677777777777776543  2 2    345667777777777777777777765432    1111 1345666


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCC-CC----cHhHHHHHHHHHHhcCC--------------------HHHHHHHHHh
Q 047067          201 VFTALASTGSLEQGKWVHAHVIKSGG-QL----VAFVGNTLVDMYAKSGS--------------------IEDAEKVFNR  255 (566)
Q Consensus       201 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~  255 (566)
                      +...+...|++++|...+.+.++... .+    ...++..+...|...|+                    +++|.+.+++
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            66777777888888777777655321 11    13366677778888888                    8888877776


Q ss_pred             cCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067          256 LLK-----R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI-APN----QVTFLCVLTACSHAGLLDEGQGYFAL  321 (566)
Q Consensus       256 ~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~  321 (566)
                      ...     .    ...++..+...|...|++++|+..+++..+... .++    ..++..+...+...|++++|...+..
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  248 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  248 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            521     1    234677888888899999999999988765311 111    33677888888899999999998855


Q ss_pred             HHhhC----CCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047067          322 MKKHG----VEP-EEAHYVTFVDLLGRAGLLDRALKFIREM----PIEPT----AAVWGALLGACRMHKNVELGAYAAER  388 (566)
Q Consensus       322 ~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~  388 (566)
                      .....    ..+ ....+..+...|...|++++|...+++.    +..++    ..++..+...+...|++++|...+++
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            44321    111 1456778888999999999999998876    11112    34777888899999999999999999


Q ss_pred             HHhcCCC
Q 047067          389 IFELDPH  395 (566)
Q Consensus       389 ~~~~~p~  395 (566)
                      ++++.+.
T Consensus       329 a~~~~~~  335 (338)
T 3ro2_A          329 HLEISRE  335 (338)
T ss_dssp             HHHC---
T ss_pred             HHHHHHh
Confidence            9987654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.36  E-value=2.8e-12  Score=123.28  Aligned_cols=232  Identities=14%  Similarity=0.120  Sum_probs=170.5

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHHHHh-------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C
Q 047067          194 THFSYSSVFTALASTGSLEQGKWVHAHVIKS-------GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-------R  259 (566)
Q Consensus       194 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~  259 (566)
                      +..++..+...+...|++++|..++.++++.       ..+....++..+...|...|++++|...|++...       +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3467788888999999999999999999874       3345567788899999999999999999988732       1


Q ss_pred             ----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh---
Q 047067          260 ----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN------GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKH---  325 (566)
Q Consensus       260 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---  325 (566)
                          ...+|..+...|...|++++|+..|+++.+.      +-.| ....+..+...+...|++++|..++....+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                3467888999999999999999999998874      2223 3456788888999999999999999665554   


Q ss_pred             ---CCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 047067          326 ---GVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-P---------IEPT-------AAVWGALLGACRMHKNVELGAY  384 (566)
Q Consensus       326 ---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-------~~~~~~ll~~~~~~g~~~~a~~  384 (566)
                         +..| ....+..+...|.+.|++++|.+.++++ .         ..+.       ...+..+...+...+.+.++..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  265 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG  265 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence               2233 3457888999999999999999999876 1         1111       1222233344455566777777


Q ss_pred             HHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          385 AAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       385 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .+++.....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88888888888888999999999999999999999998865

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.33  E-value=1.8e-10  Score=110.84  Aligned_cols=212  Identities=9%  Similarity=0.046  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHHhCCCCcHhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-ChhHHHHHHHHHHH
Q 047067          212 EQGKWVHAHVIKSGGQLVAFVGNTLVDMYA-------KSGSI-------EDAEKVFNRLLK---R-DVVSWNSMLTGCAQ  273 (566)
Q Consensus       212 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~  273 (566)
                      ++|..+|+++++.. +.+..+|..++..+.       +.|++       ++|..+|++...   | +...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            57778888888864 567778888887776       35885       899999998743   3 56789999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh-hcCCHHHH
Q 047067          274 HGLGKATVRWFEKMLRNGIAPNQ-V-TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG-RAGLLDRA  350 (566)
Q Consensus       274 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A  350 (566)
                      .|++++|..+|++.++  +.|+. . .|..+...+.+.|++++|..+|+...+.. +++...|........ ..|++++|
T Consensus       112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999998  56653 3 78999999999999999999997766643 334555554444422 37999999


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067          351 LKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFEL---DPH-DSGPHILLANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       351 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      ..+|++. ...| +...|..++..+...|+.++|..+++++++.   .|+ ....+..++..+.+.|++++|..+++++.
T Consensus       189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999988 2234 6789999999999999999999999999995   453 56688889999999999999999999998


Q ss_pred             hCC
Q 047067          425 ESG  427 (566)
Q Consensus       425 ~~g  427 (566)
                      +..
T Consensus       269 ~~~  271 (308)
T 2ond_A          269 TAF  271 (308)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.32  E-value=1.3e-10  Score=115.47  Aligned_cols=299  Identities=12%  Similarity=-0.013  Sum_probs=190.5

Q ss_pred             CCchhHHHHHHHHH--HhcCCHHHHHHHHHhCCC--------CChHHHHHHHHH--HHhCCChhHHH---------HHHH
Q 047067          126 DWNVYVGSSLLDMY--ARFDQMDDAWFLFTALES--------KNEVSWNALIAG--HARKSEGEKAL---------RTFS  184 (566)
Q Consensus       126 ~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~~  184 (566)
                      .|+..+-+.|-+-|  .+.+++++|.++++++.+        .++..|-.++..  ..-.+....+.         +.++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            34555555666555  777888888877776432        133334443332  11112222222         5555


Q ss_pred             HHHHCCCCCCH-H---HHHHHHHHHhccCChHHHHHHHHHHHHhCC--C---CcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067          185 EMLREGFEPTH-F---SYSSVFTALASTGSLEQGKWVHAHVIKSGG--Q---LVAFVGNTLVDMYAKSGSIEDAEKVFNR  255 (566)
Q Consensus       185 ~m~~~g~~pd~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~  255 (566)
                      .+.....+.+. .   .+......+...|++++|...+.++.+...  +   ....++..+...|...|+++.|...+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            55432111111 1   122234455678888888888888776421  1   1245667788888888888888888776


Q ss_pred             cCC-----C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          256 LLK-----R-----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN----GIAP-NQVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       256 ~~~-----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      ..+     +     ...+++.+...|...|++++|++.|++..+.    +-.+ ...++..+..++...|++++|...+.
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            521     1     1356788888899999999999998887663    1111 13467778888889999999999885


Q ss_pred             hHHhh----CCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---HHHHHHHH
Q 047067          321 LMKKH----GVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PI--EPTA-AVWGALLGACRMHKN---VELGAYAA  386 (566)
Q Consensus       321 ~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~ll~~~~~~g~---~~~a~~~~  386 (566)
                      .....    +.+....++..+...|.+.|++++|...+++.    +.  .|.. ..+..+...+...++   +++|+..+
T Consensus       247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            55541    32333667788888999999999999998876    11  2332 345555566777777   67777766


Q ss_pred             HHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          387 ERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       387 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ++. ...|.....+..++..|...|++++|...+++..+
T Consensus       327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            652 22233445677899999999999999999988764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.32  E-value=1.2e-10  Score=115.90  Aligned_cols=228  Identities=8%  Similarity=-0.016  Sum_probs=168.7

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC------CCcHhHHH
Q 047067          166 LIAGHARKSEGEKALRTFSEMLREG-FEPT----HFSYSSVFTALASTGSLEQGKWVHAHVIKSGG------QLVAFVGN  234 (566)
Q Consensus       166 li~~~~~~g~~~~A~~~~~~m~~~g-~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~  234 (566)
                      ....+...|++++|+..|++....- -.+|    ..++..+...+...|+++.|...+.+.++...      +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            4556677788888888888776531 0122    34666777777888888888888877765411      11235677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 047067          235 TLVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRN----GI-APNQVTFL  300 (566)
Q Consensus       235 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~  300 (566)
                      .+...|...|++++|.+.|++..+     ++    ..+|+.+...|...|++++|+..|++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            788889999999999988887631     12    247888999999999999999999998772    23 33466788


Q ss_pred             HHHHHHHccCCHHHHHHHHHhHHhh----CCCccHHHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 047067          301 CVLTACSHAGLLDEGQGYFALMKKH----GVEPEEAHYVTFVDLLGRAGL---LDRALKFIREMPIEPTA-AVWGALLGA  372 (566)
Q Consensus       301 ~ll~a~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~  372 (566)
                      .+...+...|++++|...++.....    +-+.....+..+...|...|+   +++|..++++.+..|+. ..+..+...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            8999999999999999999554432    112223346678888999999   99999999998655544 467788889


Q ss_pred             HHhcCCHHHHHHHHHHHHhcC
Q 047067          373 CRMHKNVELGAYAAERIFELD  393 (566)
Q Consensus       373 ~~~~g~~~~a~~~~~~~~~~~  393 (566)
                      +...|++++|...+++++++.
T Consensus       349 y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHH
Confidence            999999999999999998754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.32  E-value=1.7e-09  Score=107.00  Aligned_cols=259  Identities=13%  Similarity=0.043  Sum_probs=167.4

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCc----HhHHHHHH
Q 047067          167 IAGHARKSEGEKALRTFSEMLREGFEPTHF----SYSSVFTALASTGSLEQGKWVHAHVIKSGG-QLV----AFVGNTLV  237 (566)
Q Consensus       167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li  237 (566)
                      ...+...|++++|...+++........+..    ++..+...+...|++++|...+.+..+... ..+    ..++..+.
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344556666777777666665543111221    334444556666777777777666654311 011    22345566


Q ss_pred             HHHHhcCCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHH
Q 047067          238 DMYAKSGSIEDAEKVFNRLLK----------R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA--P--NQVTFLCV  302 (566)
Q Consensus       238 ~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~l  302 (566)
                      ..|...|++++|.+.+++...          + ....+..+...+...|++++|...+++.......  |  ...++..+
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  180 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  180 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence            777778888888877776521          1 1235566777788888888888888887763221  1  23567777


Q ss_pred             HHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHH-----HHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 047067          303 LTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYV-----TFVDLLGRAGLLDRALKFIREM-PIEPT-----AAVWGALL  370 (566)
Q Consensus       303 l~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll  370 (566)
                      ...+...|++++|...++......-.++ ...+.     ..+..+...|++++|...+++. ...|.     ...+..+.
T Consensus       181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la  260 (373)
T 1hz4_A          181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  260 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence            7788888999999988855443311111 11111     2334577899999999999887 22221     23566777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          371 GACRMHKNVELGAYAAERIFELDPHD------SGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       371 ~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ..+...|++++|...++++++..+..      ...+..++.+|...|++++|...+++...
T Consensus       261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            88889999999999999988754321      13667788999999999999999988865

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.30  E-value=1.5e-10  Score=101.57  Aligned_cols=160  Identities=15%  Similarity=0.035  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047067          231 FVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS  307 (566)
Q Consensus       231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~  307 (566)
                      ..+..+...|...|++++|...|+++.+   .+...|..+...+...|++++|+..++++.+..                
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------   72 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------   72 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------
Confidence            3444555556666666666666665532   234455555555555555555555555555431                


Q ss_pred             ccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047067          308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAAVWGALLGACRMHKNVELGAYA  385 (566)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~  385 (566)
                                          +.+...+..+...|...|++++|.+.++++ .. ..+...|..+...+...|++++|...
T Consensus        73 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~  132 (186)
T 3as5_A           73 --------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS  132 (186)
T ss_dssp             --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             --------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence                                123344445555555555555555555554 11 23456666777777777777777777


Q ss_pred             HHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          386 AERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       386 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ++++++..|.++.++..++.+|...|++++|...++++.+.
T Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            77777777777777777888888888888888877777653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.26  E-value=2.4e-10  Score=104.55  Aligned_cols=188  Identities=10%  Similarity=-0.037  Sum_probs=104.4

Q ss_pred             cHhHHHHHHHHHHhcCCHHHHHHHHHhcC---C-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 047067          229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLL---K-RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVL  303 (566)
Q Consensus       229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll  303 (566)
                      |+..+..+...|.+.|++++|...|++..   . ++...|..+..++...|++++|+..|++..+.  .|+ ...+..+.
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~   83 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS   83 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            34555556666666666666666666552   2 45555555666666666666666666666653  333 44555666


Q ss_pred             HHHHccCCHHHHHHHHHhHHhhCCCccH-------HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 047067          304 TACSHAGLLDEGQGYFALMKKHGVEPEE-------AHYVTFVDLLGRAGLLDRALKFIREM-PIEPT---AAVWGALLGA  372 (566)
Q Consensus       304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~  372 (566)
                      .++...|++++|...++...+... .+.       ..|..+...+.+.|++++|.+.|++. ...|+   ...|..+..+
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            666666666666666644444321 122       33555555566666666666666655 44454   2345555544


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       373 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +..     .+...++++..+.+.++..|..  ......+.+++|...+++..+.
T Consensus       163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          163 FYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence            432     3334445555555544333322  2233445568888888888763

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.24  E-value=5.7e-10  Score=102.04  Aligned_cols=204  Identities=7%  Similarity=0.037  Sum_probs=160.1

Q ss_pred             CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 047067          193 PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLT  269 (566)
Q Consensus       193 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  269 (566)
                      .|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|++.|++..+   .+...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            466788888999999999999999999999988547777777799999999999999999998842   35678999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc---HHHHHHHH
Q 047067          270 GCAQHGLGKATVRWFEKMLRNGIAPN-Q-------VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE---EAHYVTFV  338 (566)
Q Consensus       270 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li  338 (566)
                      .|...|++++|+..|++..+.  .|+ .       ..|..+...+...|++++|...|....+.  .|+   ...+..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            999999999999999999985  444 3       45778888889999999999999776654  454   56777788


Q ss_pred             HHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067          339 DLLGRAGLLDRALKFIREM-PI-EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY  407 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  407 (566)
                      ..|...|+.     .++++ .+ ..+...+....  ....+.+++|+..++++++++|+++.+...+..+.
T Consensus       161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            888766543     23332 11 22344444333  33456789999999999999999987777666554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.24  E-value=2.4e-10  Score=116.90  Aligned_cols=208  Identities=14%  Similarity=0.057  Sum_probs=127.5

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047067          176 GEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSL-EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFN  254 (566)
Q Consensus       176 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  254 (566)
                      .+++++.+++.... .+.+...+..+..++...|++ ++|...++++++.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34455555544332 123455555666666666666 66666666666654 3345566666667777777777777776


Q ss_pred             hcC--CCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CCHHHH
Q 047067          255 RLL--KRDVVSWNSMLTGCAQH---------GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHA--------GLLDEG  315 (566)
Q Consensus       255 ~~~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~a  315 (566)
                      +..  .|+...|..+...|...         |++++|+..|++..+.. +-+...+..+..++...        |++++|
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            652  34456666666666666         77777777777776642 22356666666666666        677777


Q ss_pred             HHHHHhHHhhCCC--ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047067          316 QGYFALMKKHGVE--PEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAA  386 (566)
Q Consensus       316 ~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  386 (566)
                      ...|+...+....  .+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...+
T Consensus       241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777555544210  25666777777777777777777777766 3334 3456666666676666666666543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.24  E-value=1.6e-08  Score=106.54  Aligned_cols=371  Identities=8%  Similarity=0.002  Sum_probs=253.1

Q ss_pred             CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCC---chHHHHHHHHHHHHhC-CCCchh
Q 047067           55 VKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGAT---DDKFGRQVHAFCLKYG-YDWNVY  130 (566)
Q Consensus        55 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---~~~~~~~i~~~~~~~g-~~~~~~  130 (566)
                      +.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++   .. .+..+++..+... .+|++.
T Consensus        63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~-~v~~lfeRal~~~~~~~sv~  140 (679)
T 4e6h_A           63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAA-VIEPVLARCLSKELGNNDLS  140 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHH-HHHHHHHHHTCSSSCCCCHH
T ss_pred             cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHH-HHHHHHHHHHHhcCCCCCHH
Confidence            458889999999999999999999999999985 44455667777777777777   77 8999999988864 247888


Q ss_pred             HHHHHHHHHHhcCCH--------HHHHHHHHhCC------CC-ChHHHHHHHHHHH---------hCCChhHHHHHHHHH
Q 047067          131 VGSSLLDMYARFDQM--------DDAWFLFTALE------SK-NEVSWNALIAGHA---------RKSEGEKALRTFSEM  186 (566)
Q Consensus       131 ~~~~li~~y~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m  186 (566)
                      .|...+....+.++.        +...++|+...      .+ +...|...+....         .+++.+.+..+|++.
T Consensus       141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra  220 (679)
T 4e6h_A          141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL  220 (679)
T ss_dssp             HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence            888888776666554        33457777632      22 4568888886543         234567788999998


Q ss_pred             HHCCCCCCHHHHH---HHHHHHhc----------cCChHHHHHHHHHHHHh--CC----CC-------------------
Q 047067          187 LREGFEPTHFSYS---SVFTALAS----------TGSLEQGKWVHAHVIKS--GG----QL-------------------  228 (566)
Q Consensus       187 ~~~g~~pd~~t~~---~ll~~~~~----------~~~~~~a~~~~~~~~~~--~~----~~-------------------  228 (566)
                      +......-..+|.   ..-.....          ...++.|+..+.++.+.  ++    +.                   
T Consensus       221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~  300 (679)
T 4e6h_A          221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ  300 (679)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred             HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence            8521111122332   22222100          11223344444443321  11    11                   


Q ss_pred             cHhHHHHHHHHHHhcC-------CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHH
Q 047067          229 VAFVGNTLVDMYAKSG-------SIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATV-RWFEKMLRNGIAPNQV  297 (566)
Q Consensus       229 ~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~  297 (566)
                      ....|...++.--..+       ..+.+..+|++..   ..+...|-..+.-+...|+.++|. ++|++.... .+.+..
T Consensus       301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~  379 (679)
T 4e6h_A          301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV  379 (679)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred             HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence            0245555555433332       1334566787763   347788988888888899999997 999999874 344555


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHhHHhhC---------CCc------------cHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067          298 TFLCVLTACSHAGLLDEGQGYFALMKKHG---------VEP------------EEAHYVTFVDLLGRAGLLDRALKFIRE  356 (566)
Q Consensus       298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---------~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (566)
                      .+...+......|+++.|..+|+.+....         -.|            ...+|...++...+.|.++.|..+|.+
T Consensus       380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~  459 (679)
T 4e6h_A          380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK  459 (679)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66777888888999999999996655431         013            234788888988999999999999998


Q ss_pred             C-CC--CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          357 M-PI--EPTAAVWGALLGACRM-HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       357 ~-~~--~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      + ..  .+....|......-.. .++.+.|..+|+++++..|+++..+...+......|+.+.|+.+|++......
T Consensus       460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            7 21  1233444333333233 35699999999999999999988888889988999999999999999987654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.24  E-value=9.4e-10  Score=96.39  Aligned_cols=168  Identities=17%  Similarity=0.090  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 047067          195 HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGC  271 (566)
Q Consensus       195 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~  271 (566)
                      ...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.   ..+...|..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3456777888999999999999999987764 4567888999999999999999999999874   34677888889999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067          272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL  351 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  351 (566)
                      ...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..++....+..                         
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------------  140 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------------------------  140 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------------------------
Confidence            99999999999999888752 2344555555555555566666655554333221                         


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067          352 KFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       352 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                              ..+...|..+...+...|++++|...++++++..|+++
T Consensus       141 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          141 --------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             --------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence                    12345666666667777777777777777777666654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.18  E-value=1e-08  Score=101.55  Aligned_cols=228  Identities=9%  Similarity=-0.020  Sum_probs=166.3

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----C-CcHhHH
Q 047067          165 ALIAGHARKSEGEKALRTFSEMLREGF-EPT----HFSYSSVFTALASTGSLEQGKWVHAHVIKSGG-----Q-LVAFVG  233 (566)
Q Consensus       165 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~  233 (566)
                      .....+...|++++|+..|++....-. .+|    ..++..+...+...|+++.|...+.+.++...     . ....++
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            344456778888888888887765311 122    34566677777888888888888877765311     1 124566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 047067          234 NTLVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRN----GIAPNQVTFL  300 (566)
Q Consensus       234 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~  300 (566)
                      +.+...|...|++++|.+.|++..+     .+    ..+++.+...|...|++++|+..|++..+.    +.+....++.
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  265 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence            7788888889999998888877632     12    356788888999999999999999988761    2222367788


Q ss_pred             HHHHHHHccCCHHHHHHHHHhHHhhC----CCccHHHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 047067          301 CVLTACSHAGLLDEGQGYFALMKKHG----VEPEEAHYVTFVDLLGRAGL---LDRALKFIREMPIEPTA-AVWGALLGA  372 (566)
Q Consensus       301 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~  372 (566)
                      .+...+.+.|++++|...++......    -+.....+..+...|...|+   +.+|...+++.+..|+. ..+..+...
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  345 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV  345 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            88899999999999999996555432    22224456777778888888   89999999987545544 466778888


Q ss_pred             HHhcCCHHHHHHHHHHHHhc
Q 047067          373 CRMHKNVELGAYAAERIFEL  392 (566)
Q Consensus       373 ~~~~g~~~~a~~~~~~~~~~  392 (566)
                      |...|++++|...++++++.
T Consensus       346 y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          346 FESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.17  E-value=8.7e-10  Score=105.11  Aligned_cols=216  Identities=12%  Similarity=0.026  Sum_probs=117.9

Q ss_pred             CHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 047067          144 QMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE----GFEPT-HFSYSSVFTALASTGSLEQGKWVH  218 (566)
Q Consensus       144 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~  218 (566)
                      ++++|...|++.           ...|...|++++|++.|.+....    |-+++ ..+|..+..++...|++++|...+
T Consensus        32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  100 (292)
T 1qqe_A           32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (292)
T ss_dssp             HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            366776665543           56677777777777777766442    21111 234555555555555555555555


Q ss_pred             HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-C-
Q 047067          219 AHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQH-GLGKATVRWFEKMLRNGIAP-N-  295 (566)
Q Consensus       219 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~-  295 (566)
                      ++.++.               +.+.|+...+           ..+|+.+...|... |++++|+..|++.++..... + 
T Consensus       101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A          101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            554432               1111221111           23455666666664 77777777777665521000 1 


Q ss_pred             ---HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccH------HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-
Q 047067          296 ---QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEE------AHYVTFVDLLGRAGLLDRALKFIREM-PIEPTAA-  364 (566)
Q Consensus       296 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-  364 (566)
                         ..++..+...+...|++++|...|+...+.......      ..|..+..++...|++++|...+++. .+.|+.. 
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence               235666666777777777777777555543322111      14556666677777777777777766 4444321 


Q ss_pred             -----HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 047067          365 -----VWGALLGACR--MHKNVELGAYAAERIFELDPHD  396 (566)
Q Consensus       365 -----~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~  396 (566)
                           .+..++.++.  ..+++++|+..++++.+++|..
T Consensus       235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence                 2334444543  3456777777777766666654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.17  E-value=7.8e-09  Score=102.20  Aligned_cols=262  Identities=9%  Similarity=-0.040  Sum_probs=174.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCC----CCCh----HHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCH----HHHH
Q 047067          133 SSLLDMYARFDQMDDAWFLFTALE----SKNE----VSWNALIAGHARKSEGEKALRTFSEMLREGF-EPTH----FSYS  199 (566)
Q Consensus       133 ~~li~~y~~~g~~~~A~~~f~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~~  199 (566)
                      ..+...+...|++++|...+++..    ..+.    .+++.+...+...|++++|.+.+++...... .++.    .++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            334455667788888888776632    2222    2456667778888888888888887754210 1122    2345


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHh----CCC--C-cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------ChhHH
Q 047067          200 SVFTALASTGSLEQGKWVHAHVIKS----GGQ--L-VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R------DVVSW  264 (566)
Q Consensus       200 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~  264 (566)
                      .+...+...|++++|...+++.++.    +..  | ....+..+...|...|++++|...+++...  +      ...+|
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            5667778888888888888877653    221  2 334566677888889999999988887521  1      13467


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHHccCCHHHHHHHHHhHHhhCCCc---cHHHHH
Q 047067          265 NSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFL-----CVLTACSHAGLLDEGQGYFALMKKHGVEP---EEAHYV  335 (566)
Q Consensus       265 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~  335 (566)
                      ..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...+.........+   ....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            7788888899999999999998875321221 11111     23344678899999999986554432211   123466


Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047067          336 TFVDLLGRAGLLDRALKFIREM-------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDP  394 (566)
Q Consensus       336 ~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  394 (566)
                      .+...+...|++++|...+++.       +..++. ..+..+..++...|+.++|...+++++++.+
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            7788889999999999988776       211122 2556667778889999999999999887653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=2.9e-10  Score=108.48  Aligned_cols=187  Identities=9%  Similarity=-0.017  Sum_probs=128.9

Q ss_pred             HHHHhcCCHHHHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHH
Q 047067          238 DMYAKSGSIEDAEKVFNRLLK-------R--DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI---AP--NQVTFLCVL  303 (566)
Q Consensus       238 ~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll  303 (566)
                      ..|...|++++|...|++...       +  ...+|+.+...|...|++++|+..|++.++...   .+  -..++..+.
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345566666666666665421       1  135677888888888888888888888765211   11  145788888


Q ss_pred             HHHHcc-CCHHHHHHHHHhHHhhCCC---c-c-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---H-----HHHHH
Q 047067          304 TACSHA-GLLDEGQGYFALMKKHGVE---P-E-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT---A-----AVWGA  368 (566)
Q Consensus       304 ~a~~~~-g~~~~a~~~~~~~~~~~~~---p-~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~  368 (566)
                      ..|... |++++|...|+...+....   + . ..++..+...|.+.|++++|...|++. .+.|+   .     ..|..
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            999996 9999999999655543211   1 1 356888999999999999999999987 22232   1     25777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hcCChhHHHHHHHHHH
Q 047067          369 LLGACRMHKNVELGAYAAERIFELDPHDSGP-----HILLANIYA--SAGRLNDAARARKMMK  424 (566)
Q Consensus       369 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~  424 (566)
                      +..++...|+++.|...+++.++++|+....     +..++..|.  ..+++++|...++.+.
T Consensus       205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            8888999999999999999999999986543     344566664  4577888888776553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.12  E-value=1e-09  Score=117.11  Aligned_cols=163  Identities=10%  Similarity=0.120  Sum_probs=128.8

Q ss_pred             CcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 047067          228 LVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVL  303 (566)
Q Consensus       228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll  303 (566)
                      .+...++.|..+|.+.|++++|++.|++..   ..+..+|+.+..+|.+.|++++|++.|++.++.  .|+ ...|..+.
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg   84 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            345667778888888888888888888763   335678888888888888888888888888874  454 67788888


Q ss_pred             HHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047067          304 TACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVEL  381 (566)
Q Consensus       304 ~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~  381 (566)
                      .++...|++++|.+.|+...+.. +-+...|..+..+|.+.|++++|.+.|++. .+.| +...|..+..++...|++++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            88888888888888886666553 234677888888899999999999998887 5556 45788889999999999999


Q ss_pred             HHHHHHHHHhcC
Q 047067          382 GAYAAERIFELD  393 (566)
Q Consensus       382 a~~~~~~~~~~~  393 (566)
                      |.+.+++++++.
T Consensus       164 A~~~~~kal~l~  175 (723)
T 4gyw_A          164 YDERMKKLVSIV  175 (723)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999999888754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.12  E-value=9.3e-10  Score=103.74  Aligned_cols=220  Identities=13%  Similarity=0.104  Sum_probs=156.8

Q ss_pred             hccCChHHHHHHHHHHHHh-------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChhHHHHH
Q 047067          206 ASTGSLEQGKWVHAHVIKS-------GGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--------R---DVVSWNSM  267 (566)
Q Consensus       206 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l  267 (566)
                      ...|+++.|...+++.++.       ..+....++..+...|...|++++|...|++...        .   ...+|..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4678888888888887663       2234567788899999999999999999988631        1   34678889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh------CCCc-cHHH
Q 047067          268 LTGCAQHGLGKATVRWFEKMLRN------GIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKH------GVEP-EEAH  333 (566)
Q Consensus       268 i~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~  333 (566)
                      ...|...|++++|+..|++..+.      .-.| ...++..+...+...|++++|..++....+.      +-.| ....
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998774      1123 3567888889999999999999999665554      1123 3567


Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCC
Q 047067          334 YVTFVDLLGRAGLLDRALKFIREM----------PIEPT-AAVWGALLGACRMHKNV------ELGAYAAERIFELDPHD  396 (566)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~-~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~p~~  396 (566)
                      +..+...|.+.|++++|.+.+++.          ...+. ...|..+.......+..      ..+...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            888999999999999999999876          11222 23444444444333332      22222333222234555


Q ss_pred             CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          397 SGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       397 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      +.++..++.+|...|++++|..++++..+
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66888999999999999999999998875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.07  E-value=1.7e-08  Score=94.33  Aligned_cols=205  Identities=10%  Similarity=0.005  Sum_probs=123.7

Q ss_pred             cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 047067          229 VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-D---VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI-APN-QVTFL  300 (566)
Q Consensus       229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~  300 (566)
                      +...+-.+...+.+.|++++|...|+++.+  | +   ..+|..+..+|.+.|++++|+..|++.++... .|. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            344455556666666677777666666632  2 2   34566666666666666666666666666321 111 23444


Q ss_pred             HHHHHHHc--------cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047067          301 CVLTACSH--------AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGA  372 (566)
Q Consensus       301 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~  372 (566)
                      .+..++..        .|++++|...|+...+.... +......+.......+.+               ...+..+...
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~  157 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL---------------ARKQYEAARL  157 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence            55555555        56666666666444433211 111111111000000000               1123566788


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeEEEe
Q 047067          373 CRMHKNVELGAYAAERIFELDPHDS---GPHILLANIYASA----------GRLNDAARARKMMKESGVKKEPACSWVET  439 (566)
Q Consensus       373 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~~~  439 (566)
                      +...|++++|+..++++++..|+++   .++..++.+|...          |++++|...++++.+...           
T Consensus       158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-----------  226 (261)
T 3qky_A          158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-----------  226 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------
T ss_pred             HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------
Confidence            9999999999999999999999854   4788899999877          899999999999987432           


Q ss_pred             CCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 047067          440 KNAVHMFVANDDAHPQRAMIHKKWREISEKIKQ  472 (566)
Q Consensus       440 ~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~  472 (566)
                                  .+|...+....+.++...+.+
T Consensus       227 ------------~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          227 ------------DSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             ------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred             ------------CChHHHHHHHHHHHHHHHHHH
Confidence                        234556666666677666654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.00  E-value=6.5e-08  Score=90.73  Aligned_cols=199  Identities=7%  Similarity=-0.067  Sum_probs=90.5

Q ss_pred             HHhcCCHHHHHHHHHhCCCCCh-HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 047067          139 YARFDQMDDAWFLFTALESKNE-VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWV  217 (566)
Q Consensus       139 y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~  217 (566)
                      ..-.|.+..+..-...+...+. ..---+.++|...|++....         .-.|....+..+...+ ..+    +...
T Consensus        23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~   88 (310)
T 3mv2_B           23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEE   88 (310)
T ss_dssp             HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred             HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHH
Confidence            3445777777665555543222 22223446666666665321         1123322322222222 211    3444


Q ss_pred             HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047067          218 HAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI  292 (566)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  292 (566)
                      +++.++.+ .++......+..+|...|++++|++++.+...     .+...+-.++..+.+.|+.+.|.+.+++|.+  .
T Consensus        89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~  165 (310)
T 3mv2_B           89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A  165 (310)
T ss_dssp             HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred             HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence            44444433 23333334555566666666666666655422     1334455555556666666666666666655  2


Q ss_pred             CC-----CHHHHHHHHHHH--HccC--CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067          293 AP-----NQVTFLCVLTAC--SHAG--LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE  356 (566)
Q Consensus       293 ~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (566)
                      .|     +..+...|..++  ...|  ++.+|..+|+.+.+.  .|+......+..++.+.|++++|.+.++.
T Consensus       166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44     234444444442  1122  555555555443322  12211112222244555555555555543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.00  E-value=6.7e-09  Score=97.77  Aligned_cols=161  Identities=14%  Similarity=0.161  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Q 047067          232 VGNTLVDMYAKSGSIEDAEKVFNRLLK-------R----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN------GIAP  294 (566)
Q Consensus       232 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p  294 (566)
                      ++..+...|...|++++|.+.|++...       +    ...+|..+...|...|++++|+..|++..+.      +-.|
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  166 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP  166 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            344444455555555555554444311       1    2344555666666666666666666666553      1122


Q ss_pred             -CHHHHHHHHHHHHccCCHHHHHHHHHhHHhh-------CCCcc-HHHHHHHHHHhhh------cCCHHHHHHHHHhCC-
Q 047067          295 -NQVTFLCVLTACSHAGLLDEGQGYFALMKKH-------GVEPE-EAHYVTFVDLLGR------AGLLDRALKFIREMP-  358 (566)
Q Consensus       295 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~~~p~-~~~~~~li~~~~~------~g~~~~A~~~~~~~~-  358 (566)
                       ...++..+...+...|++++|..++....+.       ...+. ...+..+...+..      ...+.++...++... 
T Consensus       167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (283)
T 3edt_B          167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV  246 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence             2345666666677777777777776444332       11111 1222222222222      233445555555553 


Q ss_pred             CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067          359 IEPT-AAVWGALLGACRMHKNVELGAYAAERIFEL  392 (566)
Q Consensus       359 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  392 (566)
                      ..|+ ..++..+...+...|++++|...++++++.
T Consensus       247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2233 357788888899999999999999998865

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.99  E-value=7.2e-10  Score=94.04  Aligned_cols=138  Identities=12%  Similarity=0.017  Sum_probs=89.0

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHH
Q 047067          272 AQHGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRA  350 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  350 (566)
                      ...|++++|++.+++....  .|+ ...+..+...|.+.|++++|...|+...+.. +-+...|..+..+|.+.|++++|
T Consensus         8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence            3344555555555554432  222 2334445555555666666666664444432 22455666677777777777777


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067          351 LKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYA-AERIFELDPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       351 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~  412 (566)
                      ...|++. .+.| +...|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus        85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            7777766 4455 467888888888888888766554 589999999999888888888877764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.98  E-value=1.8e-08  Score=82.83  Aligned_cols=129  Identities=18%  Similarity=0.254  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG  342 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  342 (566)
                      +|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..++..+....                
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------   65 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------   65 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence            45556666666666666666666665532 1234444444445555555555555553333221                


Q ss_pred             hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 047067          343 RAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKM  422 (566)
Q Consensus       343 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  422 (566)
                                       ..+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...+++
T Consensus        66 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  128 (136)
T 2fo7_A           66 -----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK  128 (136)
T ss_dssp             -----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             -----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence                             123445555566666666666666666666666666666666666666666777777666666


Q ss_pred             HHh
Q 047067          423 MKE  425 (566)
Q Consensus       423 m~~  425 (566)
                      +.+
T Consensus       129 ~~~  131 (136)
T 2fo7_A          129 ALE  131 (136)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.98  E-value=1.6e-07  Score=88.06  Aligned_cols=174  Identities=10%  Similarity=0.009  Sum_probs=91.6

Q ss_pred             HHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHh
Q 047067          249 AEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKK  324 (566)
Q Consensus       249 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  324 (566)
                      |+..|++..   .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+++.|.+.++.+.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            455555543   2334444455566666666666666666655543211 344555555666666666666666655544


Q ss_pred             hCCCc-----cHHHHHHHHHH--h--hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 047067          325 HGVEP-----EEAHYVTFVDL--L--GRAGLLDRALKFIREM-PIEPTAAVWGALLGACRMHKNVELGAYAAERIFEL--  392 (566)
Q Consensus       325 ~~~~p-----~~~~~~~li~~--~--~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--  392 (566)
                      .  .|     +..+...|..+  .  ...++..+|..+|+++ ...|+..+-..+++++...|++++|++.++.+.+.  
T Consensus       165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p  242 (310)
T 3mv2_B          165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY  242 (310)
T ss_dssp             H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred             c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            3  33     22333333333  1  2223666666666666 22344223333344566666666666666655554  


Q ss_pred             --------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          393 --------DPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       393 --------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                              +|+++.++..++..+...|+  +|.++++++++.
T Consensus       243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence                    35566666555555555554  566666666553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.97  E-value=3.3e-08  Score=81.16  Aligned_cols=123  Identities=15%  Similarity=0.273  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047067          232 VGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSH  308 (566)
Q Consensus       232 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  308 (566)
                      .+..+...|...|++++|..+|+++.   ..+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            46778899999999999999999873   3467889999999999999999999999998863 3356667777777777


Q ss_pred             cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067          309 AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE  356 (566)
Q Consensus       309 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (566)
                      .|++++|..++..+.... +.+...+..+...|.+.|++++|.+.+++
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  128 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK  128 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            888888887775555432 22334444455555555555555554444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.97  E-value=2.7e-09  Score=114.21  Aligned_cols=168  Identities=11%  Similarity=-0.043  Sum_probs=131.3

Q ss_pred             HhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 047067          241 AKSGSIEDAEKVFNRLL-----------KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSH  308 (566)
Q Consensus       241 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~  308 (566)
                      ...|++++|++.|++..           ..+...|..+...|.+.|++++|+..|++..+.  .| +...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            66788888888888775           345677888888888889999999888888874  33 56678888888888


Q ss_pred             cCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047067          309 AGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAA  386 (566)
Q Consensus       309 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  386 (566)
                      .|++++|...|+...+.. +.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..+
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            899999988886666554 2346677788888888888888 8888876 3445 5578888888888999999999999


Q ss_pred             HHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067          387 ERIFELDPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       387 ~~~~~~~p~~~~~~~~l~~~~~~~g~  412 (566)
                      +++++++|++..++..++.+|...|+
T Consensus       558 ~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HhhcccCcccHHHHHHHHHHHHccCC
Confidence            99999999888888888888877665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.96  E-value=2.4e-08  Score=94.79  Aligned_cols=174  Identities=9%  Similarity=-0.035  Sum_probs=132.6

Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC
Q 047067          248 DAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHG  326 (566)
Q Consensus       248 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  326 (566)
                      .....+......+...+..+...+.+.|++++|+..|++..+.  .| +...+..+...+...|++++|...++..... 
T Consensus       104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-  180 (287)
T 3qou_A          104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-  180 (287)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence            3344444444455566777777888888888888888888874  44 4667778888888889999999988665543 


Q ss_pred             CCccHHHHH-HHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHH
Q 047067          327 VEPEEAHYV-TFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD--SGPHI  401 (566)
Q Consensus       327 ~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~  401 (566)
                       .|+..... .....+.+.++.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|++  ..++.
T Consensus       181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~  259 (287)
T 3qou_A          181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX  259 (287)
T ss_dssp             -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred             -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence             34433222 2233466777788888888776 3345 56789999999999999999999999999999988  78899


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh
Q 047067          402 LLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       402 ~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .|+.+|...|+.++|...+++...
T Consensus       260 ~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          260 TFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999988877643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.96  E-value=1.4e-08  Score=94.87  Aligned_cols=201  Identities=11%  Similarity=0.029  Sum_probs=144.9

Q ss_pred             CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----ChhH
Q 047067          193 PTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLV---AFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R----DVVS  263 (566)
Q Consensus       193 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~  263 (566)
                      .+...+......+...|++++|...++.+++... .+   ...+..+..+|.+.|++++|...|++..+  |    ...+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            3566777788889999999999999999998753 23   56778899999999999999999999843  2    2356


Q ss_pred             HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHH
Q 047067          264 WNSMLTGCAQ--------HGLGKATVRWFEKMLRNGIAPNQ-VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHY  334 (566)
Q Consensus       264 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  334 (566)
                      +..+..++..        .|++++|+..|++.++.  .|+. .....+              ..+.....    -....+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~----~~~~~~  151 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRA----KLARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHH----HHHHHH
Confidence            7788888988        99999999999999985  3442 121111              11100000    011235


Q ss_pred             HHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCch
Q 047067          335 VTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMH----------KNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       335 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      ..+...|.+.|++++|...|+++ ...|+    ...+..+..++...          |++++|...++++++..|+++.+
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            56778899999999999999887 22333    35677777777755          88999999999999999998643


Q ss_pred             ---HHHHHHHHHhcCChh
Q 047067          400 ---HILLANIYASAGRLN  414 (566)
Q Consensus       400 ---~~~l~~~~~~~g~~~  414 (566)
                         ...+..++...++++
T Consensus       232 ~~a~~~l~~~~~~~~~~~  249 (261)
T 3qky_A          232 RTAEELYTRARQRLTELE  249 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence               334444444444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.94  E-value=7.6e-08  Score=86.72  Aligned_cols=172  Identities=8%  Similarity=-0.007  Sum_probs=128.2

Q ss_pred             HHHHHHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHhHH
Q 047067          249 AEKVFNRLL-KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG----LLDEGQGYFALMK  323 (566)
Q Consensus       249 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~  323 (566)
                      |.+.|++.. ..++.++..+...|...+++++|+..|++..+.|   +...+..|...|.. +    ++++|...|+...
T Consensus         5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            344444432 3456667777777777778888888888777754   45566666666666 5    7888888886666


Q ss_pred             hhCCCccHHHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 047067          324 KHGVEPEEAHYVTFVDLLGR----AGLLDRALKFIREM-PIEPT---AAVWGALLGACRM----HKNVELGAYAAERIFE  391 (566)
Q Consensus       324 ~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~  391 (566)
                      +.+   +...+..|..+|..    .+++++|.++|++. ...|+   +..+..|...|..    .++.++|+..++++.+
T Consensus        81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            544   45566677777776    78899999999887 43443   6788888888887    7899999999999998


Q ss_pred             cCCCCCchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 047067          392 LDPHDSGPHILLANIYASA-G-----RLNDAARARKMMKESGV  428 (566)
Q Consensus       392 ~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~  428 (566)
                      . |.++.++..|+.+|... |     ++++|...+++..+.|.
T Consensus       158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            8 66677899999999764 3     89999999999988764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.94  E-value=7.1e-08  Score=87.85  Aligned_cols=180  Identities=8%  Similarity=-0.061  Sum_probs=116.7

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHH
Q 047067          230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLK--RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQ----VTF  299 (566)
Q Consensus       230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~  299 (566)
                      ...+..+...+.+.|++++|+..|+++..  |+    ...+..+..+|.+.|++++|+..|++..+.  .|+.    ..+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence            34455567778888888888888888742  22    246777888888888888888888888874  3332    133


Q ss_pred             HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHH-----------
Q 047067          300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVW-----------  366 (566)
Q Consensus       300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~-----------  366 (566)
                      ..+..++...+..     .            ...|..+...+...|++++|...|+++ ...|+. ..+           
T Consensus        82 ~~~g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~  144 (225)
T 2yhc_A           82 YMRGLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD  144 (225)
T ss_dssp             HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence            3344444331100     0            001111222233445556666655555 223321 111           


Q ss_pred             ------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          367 ------GALLGACRMHKNVELGAYAAERIFELDPHDS---GPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       367 ------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                            ..+...+...|+++.|+..++++++..|+++   .++..++.+|.+.|++++|.+.++.+...+.
T Consensus       145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence                  2345667889999999999999999999876   4688999999999999999999999987654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.88  E-value=2.7e-08  Score=86.75  Aligned_cols=76  Identities=13%  Similarity=0.024  Sum_probs=62.2

Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          350 ALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD--SGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       350 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      |...+++. ...| +...+..+..++...|++++|...++++++.+|+.  +..+..++.+|...|+.++|...+++...
T Consensus        93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            45555554 3345 56788889999999999999999999999999875  55889999999999999999999887654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.85  E-value=2.5e-06  Score=87.11  Aligned_cols=200  Identities=11%  Similarity=-0.003  Sum_probs=103.1

Q ss_pred             CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHHHHhCCC-ccHHHHHHHH
Q 047067            7 KLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP--VKDMVTWTALISGYSQNDQ-PENAIILFSQ   83 (566)
Q Consensus         7 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~~   83 (566)
                      ++..|+.++++.+..=  |.              |+++.|..+|++..  .|++..|..-+.-..+.+. .+....+|+.
T Consensus        10 ~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~   73 (493)
T 2uy1_A           10 ELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF   73 (493)
T ss_dssp             --CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred             chHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            3677788888777642  22              78888999998754  4688888887776666553 3556677777


Q ss_pred             HHHC-CCCC-ChhHHHHHHHHHcc----CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCC
Q 047067           84 MLRL-GLKP-NQFTLSSVLKASGA----GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYAR-------------FDQ  144 (566)
Q Consensus        84 m~~~-g~~p-~~~t~~~ll~a~~~----~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~  144 (566)
                      .+.. |..| +...|...+.-+..    .++.+ .++.+++.+++.....-..+|......-..             .+.
T Consensus        74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~-~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~  152 (493)
T 2uy1_A           74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE-KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPI  152 (493)
T ss_dssp             HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH-HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH-HHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence            6653 4333 45566666655432    23444 677888887763221111222222111100             011


Q ss_pred             HHHHHHHHHhCCC----CChHHHHHHHHHHHhCCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 047067          145 MDDAWFLFTALES----KNEVSWNALIAGHARKSE-------GEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQ  213 (566)
Q Consensus       145 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~  213 (566)
                      +..|+.+++.+..    .+...|...+.--..++.       .+.+..+|+++... .+.+...|...+..+...|+.+.
T Consensus       153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~  231 (493)
T 2uy1_A          153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEK  231 (493)
T ss_dssp             HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHH
Confidence            2223333322211    133345544443222110       22345566665553 23344555555555566666666


Q ss_pred             HHHHHHHHHHh
Q 047067          214 GKWVHAHVIKS  224 (566)
Q Consensus       214 a~~~~~~~~~~  224 (566)
                      |..+++..++.
T Consensus       232 ar~i~erAi~~  242 (493)
T 2uy1_A          232 AKKVVERGIEM  242 (493)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            66666666666

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.84  E-value=1.5e-07  Score=100.69  Aligned_cols=189  Identities=13%  Similarity=0.007  Sum_probs=147.0

Q ss_pred             hccCChHHHHHHHHHHH--------HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHc
Q 047067          206 ASTGSLEQGKWVHAHVI--------KSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQH  274 (566)
Q Consensus       206 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~  274 (566)
                      ...|++++|.+.+++++        +.. +.+...+..+...|.+.|++++|++.|++..   ..+...|..+..+|...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            67888999999998887        332 4566778888899999999999999999874   34778899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHH
Q 047067          275 GLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKF  353 (566)
Q Consensus       275 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  353 (566)
                      |++++|++.|++.++.  .| +...+..+..++.+.|++++ ...|+...+.. +.+...|..+..+|.+.|++++|.+.
T Consensus       481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999985  44 56788889999999999999 99997776654 33567888899999999999999999


Q ss_pred             HHhC-CCCCCH-HHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCch
Q 047067          354 IREM-PIEPTA-AVWGALLGACRMHKN-----VELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       354 ~~~~-~~~p~~-~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      |++. .+.|+. ..|..+..++...++     .+...++.+.+.++.+.++..
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~  609 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV  609 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence            9998 667864 677777777766555     344444555555555555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.84  E-value=1.4e-08  Score=85.72  Aligned_cols=97  Identities=11%  Similarity=0.063  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      ...+..+...+.+.|++++|...|++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            456777888899999999999999988 4455 67899999999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHhCC
Q 047067          409 SAGRLNDAARARKMMKESG  427 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~~~g  427 (566)
                      ..|++++|...|++..+..
T Consensus       116 ~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9999999999999998754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.83  E-value=1.2e-06  Score=82.83  Aligned_cols=149  Identities=15%  Similarity=0.139  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCC------
Q 047067          275 GLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLD--EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGL------  346 (566)
Q Consensus       275 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------  346 (566)
                      +++++++++++++.+...+ |...|..-.....+.|.++  ++.+++..+.+.. +-+...|+.-..++.+.|.      
T Consensus       124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence            3444444444444443211 3344444333444444444  4444443333332 1233334333333333333      


Q ss_pred             HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCChhHHHHHH
Q 047067          347 LDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVE-LGAYAAERIFELD---PHDSGPHILLANIYASAGRLNDAARAR  420 (566)
Q Consensus       347 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~  420 (566)
                      ++++++.++++ ...| |...|+.+...+...|+.. ....+.+++++++   |.++.++..++.+|.+.|+.++|.+++
T Consensus       202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            55666665554 2233 5566666666666655533 3444555555554   566666667777777777777777777


Q ss_pred             HHHHh
Q 047067          421 KMMKE  425 (566)
Q Consensus       421 ~~m~~  425 (566)
                      +.+.+
T Consensus       282 ~~l~~  286 (306)
T 3dra_A          282 DLLKS  286 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.82  E-value=4e-08  Score=103.08  Aligned_cols=159  Identities=11%  Similarity=0.037  Sum_probs=125.0

Q ss_pred             cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 047067          243 SGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGY  318 (566)
Q Consensus       243 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~  318 (566)
                      .|++++|.+.|++..+   .+...|..+...|.+.|++++|++.|++..+.  .| +...+..+..++...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4789999999998853   35788999999999999999999999999985  44 577889999999999999999999


Q ss_pred             HHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 047067          319 FALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMH---KNVELGAYAAERIFELD  393 (566)
Q Consensus       319 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~  393 (566)
                      ++...+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++...   |+.++|.+.++++++.+
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            97766654 345778899999999999999999999987 3345 567889999999999   99999999999999999


Q ss_pred             CCCCchHHHHH
Q 047067          394 PHDSGPHILLA  404 (566)
Q Consensus       394 p~~~~~~~~l~  404 (566)
                      |.+...+..++
T Consensus       159 p~~~~~~~~l~  169 (568)
T 2vsy_A          159 VGAVEPFAFLS  169 (568)
T ss_dssp             CCCSCHHHHTT
T ss_pred             CcccChHHHhC
Confidence            99988887776

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.81  E-value=1.3e-07  Score=90.66  Aligned_cols=218  Identities=10%  Similarity=-0.002  Sum_probs=151.7

Q ss_pred             CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 047067          173 KSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKV  252 (566)
Q Consensus       173 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  252 (566)
                      .|++++|.+++++..+.. +..   +      +...++++.|...+.++               ...|...|++++|...
T Consensus         4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence            567888999998876531 111   0      11146777777766554               4567778888888888


Q ss_pred             HHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHccCCHHHHHHH
Q 047067          253 FNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI---APN--QVTFLCVLTACSHAGLLDEGQGY  318 (566)
Q Consensus       253 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~  318 (566)
                      |.+...     .+    ..+|+.+...|...|++++|+..|++.++.-.   .|.  ..++..+...|.. |++++|...
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            876632     11    35788888999999999999999998765311   121  4577788888888 999999999


Q ss_pred             HHhHHhhCCC---c--cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 047067          319 FALMKKHGVE---P--EEAHYVTFVDLLGRAGLLDRALKFIREM-PI---EPT----AAVWGALLGACRMHKNVELGAYA  385 (566)
Q Consensus       319 ~~~~~~~~~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~  385 (566)
                      |+........   +  ...++..+...|.+.|++++|...|++. .+   .++    ...+..+..++...|++++|...
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~  217 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC  217 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9555432111   1  1457888899999999999999999877 11   122    23666777778888999999999


Q ss_pred             HHHHHhcCCCCCch-----HHHHHHHHHhcCChhHHHH
Q 047067          386 AERIFELDPHDSGP-----HILLANIYASAGRLNDAAR  418 (566)
Q Consensus       386 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~  418 (566)
                      +++.+ +.|....+     ...++.+| ..|+.+.+..
T Consensus       218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            99999 98876533     33455555 4566655554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.80  E-value=3.3e-07  Score=82.26  Aligned_cols=126  Identities=8%  Similarity=0.006  Sum_probs=64.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC
Q 047067          267 MLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG  345 (566)
Q Consensus       267 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  345 (566)
                      +...|.+.|++++|+..|++.++.  .| +...+..+..++...|++++|...|+...+.. +.+...+..+...|...|
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence            444555555555555555555553  22 34455555555555555555555554444332 223444555555554433


Q ss_pred             C--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067          346 L--LDRALKFIREMPIEPTA--AVWGALLGACRMHKNVELGAYAAERIFELDPHD  396 (566)
Q Consensus       346 ~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  396 (566)
                      .  .+.+...++... .|+.  ..|..+..++...|++++|+..+++++++.|++
T Consensus       137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            2  333444454442 2332  233444455566677777888888887777764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.80  E-value=1.5e-07  Score=84.47  Aligned_cols=122  Identities=8%  Similarity=-0.038  Sum_probs=63.9

Q ss_pred             HHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-
Q 047067          302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKN-  378 (566)
Q Consensus       302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~-  378 (566)
                      +..++...|++++|...|+...+.. +.+...+..+..+|...|++++|...|++. .+.| +...|..+...+...|+ 
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            5556666666666666665444433 224555666666666666666666666665 3334 34555555555543332 


Q ss_pred             -HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          379 -VELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       379 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                       .+.+...++++....|.. ..+..++.++...|++++|...+++..+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          139 EKKKLETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence             233444444443322221 1334455555666666666666666655

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.79  E-value=9.5e-08  Score=100.20  Aligned_cols=147  Identities=11%  Similarity=-0.030  Sum_probs=105.5

Q ss_pred             cCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHH
Q 047067          208 TGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK---RDVVSWNSMLTGCAQHGLGKATVRWF  284 (566)
Q Consensus       208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~  284 (566)
                      .|++++|...++++++.. +.+...+..+...|.+.|++++|.+.|++..+   .+...|..+...|...|++++|++.|
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            467888999998887765 45677888899999999999999999988743   35678888999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc---CCHHHHHHHHHhC
Q 047067          285 EKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA---GLLDRALKFIREM  357 (566)
Q Consensus       285 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~  357 (566)
                      ++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+...+...   |+.++|.+.+++.
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            9988853 2246788888899999999999999997666654 33567788888888888   9999999998877

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.78  E-value=7.5e-09  Score=87.66  Aligned_cols=122  Identities=12%  Similarity=0.057  Sum_probs=99.8

Q ss_pred             HHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 047067          302 VLTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKN  378 (566)
Q Consensus       302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~  378 (566)
                      |...+...|++++|+..+.....  ..|+ ...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..++...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence            34455667889999998865443  2333 345567889999999999999999988 5556 67899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHH-HHHHHh
Q 047067          379 VELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARA-RKMMKE  425 (566)
Q Consensus       379 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~  425 (566)
                      +++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887765 577765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.76  E-value=3.3e-08  Score=83.39  Aligned_cols=97  Identities=10%  Similarity=0.043  Sum_probs=86.4

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY  407 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  407 (566)
                      +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            4556677888899999999999999887 3345 6788999999999999999999999999999999999999999999


Q ss_pred             HhcCChhHHHHHHHHHHhC
Q 047067          408 ASAGRLNDAARARKMMKES  426 (566)
Q Consensus       408 ~~~g~~~~a~~~~~~m~~~  426 (566)
                      ...|++++|...+++..+.
T Consensus       100 ~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999998764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.75  E-value=1.1e-05  Score=76.37  Aligned_cols=227  Identities=10%  Similarity=0.035  Sum_probs=165.5

Q ss_pred             CCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH----Hhc--
Q 047067          173 KSEGEKALRTFSEMLREGFEPTHF-SYSSVFTALASTG--SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY----AKS--  243 (566)
Q Consensus       173 ~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--  243 (566)
                      ....++|++++++++..  .|+.. .++.--.++...+  .++++...+..++... +.+..+|+.-...+    .+.  
T Consensus        46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence            34446788888877764  45443 3455555566666  7888888888887765 44455555544444    444  


Q ss_pred             -CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------
Q 047067          244 -GSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGK--ATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL------  311 (566)
Q Consensus       244 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------  311 (566)
                       +++++++++++.+.   .+|..+|+.-.-.+.+.|.++  ++++.++++++.... |...|+.-.....+.+.      
T Consensus       123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence             78889999888884   457788888888888888888  999999999986543 66677766666666666      


Q ss_pred             HHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047067          312 LDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDR-ALKFIREM-PI----EPTAAVWGALLGACRMHKNVELGAYA  385 (566)
Q Consensus       312 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~  385 (566)
                      ++++.+.+..+.... +-|...|+.+...+.+.|+..+ +.++.++. ..    ..+...+..+...+...|+.++|.++
T Consensus       202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            888888886666554 4577888888888888888544 55677765 22    23678899999999999999999999


Q ss_pred             HHHHHh-cCCCCCchHHHHH
Q 047067          386 AERIFE-LDPHDSGPHILLA  404 (566)
Q Consensus       386 ~~~~~~-~~p~~~~~~~~l~  404 (566)
                      ++++.+ .+|.....+...+
T Consensus       281 ~~~l~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          281 YDLLKSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHhccChHHHHHHHHHH
Confidence            999996 8998876666544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.75  E-value=8.3e-07  Score=79.83  Aligned_cols=160  Identities=8%  Similarity=-0.023  Sum_probs=101.3

Q ss_pred             ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHHHhCCCCcHhHHH
Q 047067          159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG----SLEQGKWVHAHVIKSGGQLVAFVGN  234 (566)
Q Consensus       159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~  234 (566)
                      ++.++..+...|...+++++|++.|++..+.|   +...+..+...+.. +    +.++|...+++..+.|   +...+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~   89 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI   89 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            55566666666666666666666666666654   34455555555555 4    6666777776666554   444555


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047067          235 TLVDMYAK----SGSIEDAEKVFNRLLKRD-----VVSWNSMLTGCAQ----HGLGKATVRWFEKMLRNGIAPNQVTFLC  301 (566)
Q Consensus       235 ~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~  301 (566)
                      .|..+|..    .+++++|.+.|++..+.+     +.++..|...|..    .++.++|+.+|++..+.  .++...+..
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~  167 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW  167 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence            66666665    667777777777765433     4677777777777    66777777777777764  224445555


Q ss_pred             HHHHHHcc-C-----CHHHHHHHHHhHHhhCC
Q 047067          302 VLTACSHA-G-----LLDEGQGYFALMKKHGV  327 (566)
Q Consensus       302 ll~a~~~~-g-----~~~~a~~~~~~~~~~~~  327 (566)
                      |...|... |     ++++|...|+...+.|.
T Consensus       168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            66655432 2     67777777766666653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.74  E-value=6.5e-08  Score=79.02  Aligned_cols=99  Identities=14%  Similarity=0.084  Sum_probs=72.8

Q ss_pred             CCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067          327 VEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILL  403 (566)
Q Consensus       327 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  403 (566)
                      +.|+ ...+......|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            3444 345566677777777777777777766 3344 566777777777888888888888888888888887788888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHh
Q 047067          404 ANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       404 ~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      +.+|...|++++|.+.|++..+
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888888877765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.74  E-value=8.6e-07  Score=84.22  Aligned_cols=159  Identities=8%  Similarity=-0.053  Sum_probs=110.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHhHHhhCCC-cc----HHHHHH
Q 047067          267 MLTGCAQHGLGKATVRWFEKMLRNG-IAPNQV----TFLCVLTACSHAGLLDEGQGYFALMKKHGVE-PE----EAHYVT  336 (566)
Q Consensus       267 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~  336 (566)
                      .+..+...|++++|..++++..+.. ..|+..    .+..+...+...+++++|...+......... ++    ...++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            3556677777777777777776632 122211    2334555666677788888877555542221 22    335777


Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-------CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 047067          337 FVDLLGRAGLLDRALKFIREM-------PIE-PT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHI  401 (566)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~~-------~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  401 (566)
                      +...|...|++++|...++++       +.. |. ..++..+...|...|++++|+..+++++++.+..      +.+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888888888888888877765       111 22 2478888899999999999999999999765332      45788


Q ss_pred             HHHHHHHhcCC-hhHHHHHHHHHHh
Q 047067          402 LLANIYASAGR-LNDAARARKMMKE  425 (566)
Q Consensus       402 ~l~~~~~~~g~-~~~a~~~~~~m~~  425 (566)
                      .++.+|.+.|+ +++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            99999999995 6999999988864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.72  E-value=1.6e-07  Score=76.61  Aligned_cols=109  Identities=11%  Similarity=-0.011  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047067          297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACR  374 (566)
Q Consensus       297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~  374 (566)
                      ..+......+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            345556666666777777777775555443 335666777777777888888888877776 3344 5678999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067          375 MHKNVELGAYAAERIFELDPHDSGPHILLANI  406 (566)
Q Consensus       375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  406 (566)
                      ..|++++|+..++++++++|+++.++..|.++
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999998887777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.72  E-value=2.9e-07  Score=80.07  Aligned_cols=156  Identities=13%  Similarity=-0.002  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 047067          131 VGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTA-LA  206 (566)
Q Consensus       131 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~  206 (566)
                      ....+...+.+.|++++|...|++..+   .+...|..+...+.+.|++++|+..|++....  .|+...+...... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence            455667788899999999999999875   36788999999999999999999999988664  3444332222111 11


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCCHHHHH
Q 047067          207 STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR-----DVVSWNSMLTGCAQHGLGKATV  281 (566)
Q Consensus       207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~  281 (566)
                      ..+....+...++.+++.. +.+...+..+...|...|++++|...|+++.+.     +...|..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2222334566677776654 345666667777777777777777777776432     1346777777777777777777


Q ss_pred             HHHHHHHH
Q 047067          282 RWFEKMLR  289 (566)
Q Consensus       282 ~~~~~m~~  289 (566)
                      ..|++.+.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.72  E-value=3.6e-07  Score=82.04  Aligned_cols=125  Identities=8%  Similarity=-0.050  Sum_probs=100.5

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047067          299 FLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMH  376 (566)
Q Consensus       299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~  376 (566)
                      +..+...+...|++++|...|...    +.|+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            444555666777777777777544    2556677777888888888888888888776 2234 567888899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          377 KNVELGAYAAERIFELDPHDS----------------GPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       377 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      |++++|+..++++++..|.+.                .++..++.+|...|++++|...+++..+..
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            999999999999999888877                889999999999999999999999998754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.70  E-value=3.6e-07  Score=86.52  Aligned_cols=154  Identities=6%  Similarity=-0.095  Sum_probs=68.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHcc
Q 047067          234 NTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFL-CVLTACSHA  309 (566)
Q Consensus       234 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~  309 (566)
                      ..+...+.+.|++++|...|++..   ..+...+..+...+.+.|++++|+..+++....  .|+..... .....+...
T Consensus       121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~  198 (287)
T 3qou_A          121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQ  198 (287)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhh
Confidence            334444444444444444444431   123344444444444444555554444444332  23322111 111123333


Q ss_pred             CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 047067          310 GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT---AAVWGALLGACRMHKNVELGAYA  385 (566)
Q Consensus       310 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~  385 (566)
                      +..++|...++...... +.+...+..+...|...|++++|...++++ ...|+   ...+..++..+...|+.++|...
T Consensus       199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~  277 (287)
T 3qou_A          199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX  277 (287)
T ss_dssp             HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence            44444444443333322 223444455555555555555555555554 22222   34555555556666666666555


Q ss_pred             HHHHH
Q 047067          386 AERIF  390 (566)
Q Consensus       386 ~~~~~  390 (566)
                      +++.+
T Consensus       278 ~r~al  282 (287)
T 3qou_A          278 YRRQL  282 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.69  E-value=1.3e-06  Score=89.16  Aligned_cols=359  Identities=9%  Similarity=-0.066  Sum_probs=209.8

Q ss_pred             hcC-ChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHH
Q 047067           39 KCG-CLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVH  117 (566)
Q Consensus        39 ~~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~  117 (566)
                      +.| +++.|+.+|+.+.           ..|-. |+++.+..+|++.+..  .|+...|..-++-..+.++..+..+.++
T Consensus         6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f   71 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY   71 (493)
T ss_dssp             ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred             HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            345 3677777776643           22211 7899999999999874  5898888888777665554322677788


Q ss_pred             HHHHHh-CCC-CchhHHHHHHHHHH----hcCCHHHHHHHHHhCCC-C--Ch-HHHHHHHHHHHh-------------CC
Q 047067          118 AFCLKY-GYD-WNVYVGSSLLDMYA----RFDQMDDAWFLFTALES-K--NE-VSWNALIAGHAR-------------KS  174 (566)
Q Consensus       118 ~~~~~~-g~~-~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~-~--~~-~~~~~li~~~~~-------------~g  174 (566)
                      +.++.. |.. .+..+|...+..+.    ..++++.++++|++... |  +. ..|......-..             .+
T Consensus        72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~  151 (493)
T 2uy1_A           72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP  151 (493)
T ss_dssp             HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence            887775 543 36677887777654    34678899999998744 2  21 223322221100             11


Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CC-----hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 047067          175 EGEKALRTFSEMLREGFEPTHFSYSSVFTALAST--GS-----LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE  247 (566)
Q Consensus       175 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  247 (566)
                      .+..|..+++++...--..+...|...+.--...  +-     .+.+..+|++++... +.+..+|-..+..+.+.|+++
T Consensus       152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~  230 (493)
T 2uy1_A          152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKE  230 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence            2233444444433210001223444444332221  11     234667888888764 556778888888888899999


Q ss_pred             HHHHHHHhcCC-C-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHccCCHH
Q 047067          248 DAEKVFNRLLK-R-DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG---------IAP---NQVTFLCVLTACSHAGLLD  313 (566)
Q Consensus       248 ~A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~ll~a~~~~g~~~  313 (566)
                      .|..+|++... | +...|.    .|+...+.++.   ++.+.+.-         ..+   ....|...+....+.+.++
T Consensus       231 ~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~  303 (493)
T 2uy1_A          231 KAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE  303 (493)
T ss_dssp             HHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence            99999987632 3 222232    23222111122   22222210         011   1244666666666678899


Q ss_pred             HHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047067          314 EGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG-LLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIF  390 (566)
Q Consensus       314 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  390 (566)
                      .|..+|... ... ..+...|...+.+-.+.+ +.+.|..+|+..  ...-+...|...+.-....|+.+.|..+++++.
T Consensus       304 ~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~  381 (493)
T 2uy1_A          304 LFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE  381 (493)
T ss_dssp             HHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999665 211 234445544333333334 699999999876  221234567777777788899999999999872


Q ss_pred             hcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          391 ELDPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       391 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                          .....+...+..-...|+.+.+..+++++.+
T Consensus       382 ----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          382 ----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             ----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                3445666677766778999999888877764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.68  E-value=1.9e-07  Score=78.08  Aligned_cols=96  Identities=14%  Similarity=-0.016  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            445666778888999999999999887 3345 67889999999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHhC
Q 047067          409 SAGRLNDAARARKMMKES  426 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~~~  426 (566)
                      ..|++++|...+++..+.
T Consensus        98 ~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            999999999999998764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.66  E-value=8.1e-07  Score=84.41  Aligned_cols=163  Identities=7%  Similarity=-0.070  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC---Ccc--HH
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPN-----QVTFLCVLTACSHAGLLDEGQGYFALMKKHGV---EPE--EA  332 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~p~--~~  332 (566)
                      .+...+..+...|++++|++.+.+..+.....+     ...+..+...+...|++++|...+........   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344456667777778888777777766422111     11233445556677788888888755443211   111  44


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CC
Q 047067          333 HYVTFVDLLGRAGLLDRALKFIREM----PIEPT-----AAVWGALLGACRMHKNVELGAYAAERIFELDPH------DS  397 (566)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~  397 (566)
                      .|+.+...|...|++++|...+++.    ...|+     ..++..+...|...|++++|+..+++++++.+.      -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7778888888888888888888765    11222     257888889999999999999999999876432      14


Q ss_pred             chHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 047067          398 GPHILLANIYASAGRLNDA-ARARKMMKE  425 (566)
Q Consensus       398 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~  425 (566)
                      .+|..++.+|.+.|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            5788999999999999999 777877654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.65  E-value=1.3e-06  Score=78.33  Aligned_cols=145  Identities=6%  Similarity=-0.133  Sum_probs=99.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047067          233 GNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLL  312 (566)
Q Consensus       233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  312 (566)
                      +..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence            34566677788888888888888877777888888888888888888888888877742 23456666777777777777


Q ss_pred             HHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          313 DEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPT-AAVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       313 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      ++|...|+...+.........       +...|           +...|+ ...|..+..++...|++++|...++++++
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~-------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLID-------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEE-------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCccHHH-------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            777777755444321110000       00000           012333 36778888888889999999999999999


Q ss_pred             cCCCC
Q 047067          392 LDPHD  396 (566)
Q Consensus       392 ~~p~~  396 (566)
                      +.|++
T Consensus       150 ~~p~~  154 (213)
T 1hh8_A          150 MKSEP  154 (213)
T ss_dssp             TCCSG
T ss_pred             cCccc
Confidence            98876

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.64  E-value=5.3e-06  Score=78.69  Aligned_cols=157  Identities=11%  Similarity=-0.043  Sum_probs=116.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCCC---Ch------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 047067          236 LVDMYAKSGSIEDAEKVFNRLLKR---DV------VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PN----QVTFLC  301 (566)
Q Consensus       236 li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~  301 (566)
                      .+..+...|++++|...+++..+.   +.      ..+..+...+...|++++|+..|++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            466788899999999999887432   11      13334666677778999999999999874322 22    236888


Q ss_pred             HHHHHHccCCHHHHHHHHHhHHh----h-CCCcc-HHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047067          302 VLTACSHAGLLDEGQGYFALMKK----H-GVEPE-EAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPT-AAVWG  367 (566)
Q Consensus       302 ll~a~~~~g~~~~a~~~~~~~~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~  367 (566)
                      +..+|...|++++|..+|..+.+    . +..+. ..+|..+...|.+.|++++|.+.+++.       +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            89999999999999999955552    1 22222 347788999999999999999998876       22233 56888


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHhc
Q 047067          368 ALLGACRMHKN-VELGAYAAERIFEL  392 (566)
Q Consensus       368 ~ll~~~~~~g~-~~~a~~~~~~~~~~  392 (566)
                      .+..++...|+ .++|...+++++++
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            89999999994 69999999998864

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.64  E-value=1.6e-07  Score=90.04  Aligned_cols=195  Identities=8%  Similarity=-0.026  Sum_probs=148.2

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 047067          207 STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK-SGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFE  285 (566)
Q Consensus       207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  285 (566)
                      ..|++++|..++++..+.... .          +.+ .++++.|...|.+           ....|...|++++|+..|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~   60 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL   60 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence            356778899988888765321 1          122 5788999888775           3667889999999999999


Q ss_pred             HHHHcCC---CC--CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhC--C-Cc--cHHHHHHHHHHhhhcCCHHHHHHHHH
Q 047067          286 KMLRNGI---AP--NQVTFLCVLTACSHAGLLDEGQGYFALMKKHG--V-EP--EEAHYVTFVDLLGRAGLLDRALKFIR  355 (566)
Q Consensus       286 ~m~~~g~---~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~  355 (566)
                      +..+...   .+  -..+|..+...|...|++++|...|......-  . .|  ...++..+...|.+ |++++|...|+
T Consensus        61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~  139 (307)
T 2ifu_A           61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ  139 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence            8876321   11  14578888999999999999999995544321  1 12  24578888899988 99999999998


Q ss_pred             hC-CCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCChhHHHHHHH
Q 047067          356 EM-PIEP---T----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDS------GPHILLANIYASAGRLNDAARARK  421 (566)
Q Consensus       356 ~~-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~  421 (566)
                      +. .+.|   +    ..++..+...+...|++++|+..+++++++.|.+.      ..+..++.++...|++++|...++
T Consensus       140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~  219 (307)
T 2ifu_A          140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR  219 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            76 1111   1    35788889999999999999999999999866543      256677888889999999999999


Q ss_pred             HHH
Q 047067          422 MMK  424 (566)
Q Consensus       422 ~m~  424 (566)
                      +..
T Consensus       220 ~al  222 (307)
T 2ifu_A          220 ESY  222 (307)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            987

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.63  E-value=1.4e-07  Score=89.13  Aligned_cols=189  Identities=12%  Similarity=-0.016  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 047067          231 FVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTAC  306 (566)
Q Consensus       231 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~  306 (566)
                      ..+..+...|.+.|++++|...|++..   ..+...|..+...|.+.|++++|+..+++.++.  .| +...+..+..++
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            344445555555666666666655542   224555666666666666666666666666553  23 345555566666


Q ss_pred             HccCCHHHHHHHHHhHHhhCCCccH-HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047067          307 SHAGLLDEGQGYFALMKKHGVEPEE-AHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYA  385 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  385 (566)
                      ...|++++|...|....+..  |+. ..+...+....+......... .......++......+ ..+ ..|+.++|++.
T Consensus        83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~  157 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELEE  157 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence            66666666666664433321  110 000011111111111111111 1122222333333333 222 26888999999


Q ss_pred             HHHHHhcCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 047067          386 AERIFELDPHDSGPHILLANIYASA-GRLNDAARARKMMKES  426 (566)
Q Consensus       386 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~  426 (566)
                      ++++++++|++......+...+.+. +++++|.++|.++.+.
T Consensus       158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999998877777777777766 7789999999988653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.62  E-value=2.1e-06  Score=77.99  Aligned_cols=60  Identities=12%  Similarity=-0.040  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC----hHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047067          130 YVGSSLLDMYARFDQMDDAWFLFTALES--KN----EVSWNALIAGHARKSEGEKALRTFSEMLRE  189 (566)
Q Consensus       130 ~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  189 (566)
                      ..+..+...+.+.|++++|...|+++.+  |+    ...+..+..+|.+.|++++|+..|++..+.
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3445556667777777777777776553  21    245666677777777777777777777654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.61  E-value=3.8e-07  Score=88.53  Aligned_cols=144  Identities=13%  Similarity=0.031  Sum_probs=106.7

Q ss_pred             ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067          260 DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD  339 (566)
Q Consensus       260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  339 (566)
                      +...|..+...|.+.|++++|+..|++.++.  .|+...+           ..+.+..+-        +.....|..+..
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~  204 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ--------ALRLASHLNLAM  204 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence            3456777777777777777777777777663  2221000           001111110        011457778888


Q ss_pred             HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH-
Q 047067          340 LLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA-  416 (566)
Q Consensus       340 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-  416 (566)
                      +|.+.|++++|...+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++| 
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999887 3445 6778999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHHH
Q 047067          417 ARARKMMK  424 (566)
Q Consensus       417 ~~~~~~m~  424 (566)
                      ...++.|.
T Consensus       285 ~~~~~~~~  292 (336)
T 1p5q_A          285 KKLYANMF  292 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            45666664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.61  E-value=9.8e-07  Score=75.41  Aligned_cols=127  Identities=8%  Similarity=0.015  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067          298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM  375 (566)
Q Consensus       298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  375 (566)
                      .+..+...+...|++++|...|....... +.+...+..+...+...|++++|.+.+++. ...| +...|..+..++..
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34444455555566666666664443332 224556666677777777777777777665 2233 56788888889999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 047067          376 HKNVELGAYAAERIFELDPHDSGPHILLANI--YASAGRLNDAARARKMMKE  425 (566)
Q Consensus       376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~  425 (566)
                      .|++++|...+++++++.|.+...+..+..+  +...|++++|...+....+
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            9999999999999999999988777554444  7888999999999887754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.59  E-value=1.2e-06  Score=70.50  Aligned_cols=114  Identities=17%  Similarity=0.241  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 047067          297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIE-PTAAVWGALLGACR  374 (566)
Q Consensus       297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~  374 (566)
                      ..+..+...+...|++++|...+..+.... +.+...+..+...+.+.|++++|...++++ ... .+..+|..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            344444455555555555555554333322 223445556666666677777777766665 222 35667788888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 047067          375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAG  411 (566)
Q Consensus       375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  411 (566)
                      ..|++++|...++++++..|+++..+..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            8889999999999998888888888888877776543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.56  E-value=4.3e-07  Score=73.92  Aligned_cols=96  Identities=14%  Similarity=-0.016  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            455667778888899999999998877 3344 57889999999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHhC
Q 047067          409 SAGRLNDAARARKMMKES  426 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~~~  426 (566)
                      ..|++++|...+++..+.
T Consensus        84 ~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           84 AVKEYASALETLDAARTK  101 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHh
Confidence            999999999999998764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.55  E-value=1.2e-06  Score=71.18  Aligned_cols=117  Identities=9%  Similarity=0.029  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047067          296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGAC  373 (566)
Q Consensus       296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~  373 (566)
                      ...+..+...+...|++++|...+....... +.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            3444555555556666666666664444332 224555666667777777777777777665 2233 466788888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 047067          374 RMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL  413 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  413 (566)
                      ...|++++|...++++++..|+++..+..++.++...|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            8999999999999999999999888888888888888775

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.52  E-value=1.3e-06  Score=71.32  Aligned_cols=115  Identities=12%  Similarity=0.034  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047067          297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACR  374 (566)
Q Consensus       297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~  374 (566)
                      ..+..+...+...|++++|...+....+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+..++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            344444444444444444444443333221 123445555556666666666666666555 2223 4567777778888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067          375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  412 (566)
                      ..|++++|...++++++.+|.+...+..++.++...|+
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            88888888888888888888888788888887776653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.52  E-value=1e-06  Score=76.57  Aligned_cols=119  Identities=9%  Similarity=0.039  Sum_probs=81.3

Q ss_pred             ccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--HHH
Q 047067          308 HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGA-CRMHKNV--ELG  382 (566)
Q Consensus       308 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~a  382 (566)
                      ..|++++|...+....... +.+...+..+...|...|++++|...|++. ...| +...|..+..+ +...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            3455566666664444332 234556666777777777777777777665 2223 55667777777 6677887  888


Q ss_pred             HHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          383 AYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       383 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ...++++++.+|+++.++..++.+|...|++++|...++++.+..
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            888888888888888888888888888888888888888887643

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.51  E-value=8.1e-07  Score=82.19  Aligned_cols=127  Identities=14%  Similarity=-0.004  Sum_probs=73.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc--HHHHHHHHHHhhh
Q 047067          266 SMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE--EAHYVTFVDLLGR  343 (566)
Q Consensus       266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~  343 (566)
                      .....+...|++++|.++|+.+...  .|+......+...+.+.+++++|+..|....... .|.  ...+..+..++.+
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence            3445556666666666666666553  2443344444445666667777776664333211 111  2245556666777


Q ss_pred             cCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067          344 AGLLDRALKFIREM---PIEPT--AAVWGALLGACRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       344 ~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      .|++++|+..|++.   +..|.  ...+.....++...|+.++|...++++...+|+
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            77777777777666   21143  235555666667777777777777777777776

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.51  E-value=9.9e-07  Score=78.31  Aligned_cols=78  Identities=13%  Similarity=-0.030  Sum_probs=38.5

Q ss_pred             hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHH
Q 047067          242 KSGSIEDAEK---VFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN----GIAP-NQVTFLCVLTACSHAGLLD  313 (566)
Q Consensus       242 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~  313 (566)
                      ..|++++|.+   .+..-+.....+++.+...+...|++++|+..+++..+.    +..| ...++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            3456666666   443322234455666666666666666666666665541    1111 1234444444555555555


Q ss_pred             HHHHHH
Q 047067          314 EGQGYF  319 (566)
Q Consensus       314 ~a~~~~  319 (566)
                      +|...+
T Consensus        84 ~A~~~~   89 (203)
T 3gw4_A           84 AARRCF   89 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555555

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.50  E-value=4e-06  Score=79.56  Aligned_cols=161  Identities=11%  Similarity=-0.047  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 047067          232 VGNTLVDMYAKSGSIEDAEKVFNRLLK---RDV------VSWNSMLTGCAQHGLGKATVRWFEKMLRNGI---APN--QV  297 (566)
Q Consensus       232 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~  297 (566)
                      .+...+..+...|++++|.+.+++..+   ...      ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            334456677788888888888765421   111      2234455666777888899888888875321   111  44


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHhHHh---h-CCCc--cHHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-H
Q 047067          298 TFLCVLTACSHAGLLDEGQGYFALMKK---H-GVEP--EEAHYVTFVDLLGRAGLLDRALKFIREM-------PIEPT-A  363 (566)
Q Consensus       298 t~~~ll~a~~~~g~~~~a~~~~~~~~~---~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~  363 (566)
                      +++.+...|...|++++|..++....+   . +-.+  ...++..+...|.+.|++++|.+.+++.       +..+. .
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            778888888888999998888855441   1 1111  1257788888899999999999888776       11111 5


Q ss_pred             HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 047067          364 AVWGALLGACRMHKNVELG-AYAAERIFEL  392 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~  392 (566)
                      .+|..+..++...|+.++| ...+++++++
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            6788888899999999999 7778887753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.48  E-value=5e-07  Score=73.06  Aligned_cols=94  Identities=19%  Similarity=0.087  Sum_probs=83.5

Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067          333 HYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA  410 (566)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  410 (566)
                      .+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3455677888999999999999988 4455 6788999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhC
Q 047067          411 GRLNDAARARKMMKES  426 (566)
Q Consensus       411 g~~~~a~~~~~~m~~~  426 (566)
                      |++++|...+++..+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           99 HNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.46  E-value=8.8e-07  Score=75.93  Aligned_cols=97  Identities=16%  Similarity=0.047  Sum_probs=70.2

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY  407 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  407 (566)
                      +...+..+...+.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445666667777777777777777766 3334 5567777777777777777777777777777777777777777777


Q ss_pred             HhcCChhHHHHHHHHHHhC
Q 047067          408 ASAGRLNDAARARKMMKES  426 (566)
Q Consensus       408 ~~~g~~~~a~~~~~~m~~~  426 (566)
                      ...|++++|...+++..+.
T Consensus        90 ~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh
Confidence            7778888877777777653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.46  E-value=5.5e-06  Score=76.62  Aligned_cols=182  Identities=10%  Similarity=-0.021  Sum_probs=135.9

Q ss_pred             hcCCHHHHHHHHHhcC---CCChhHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------
Q 047067          242 KSGSIEDAEKVFNRLL---KRDVVSWNSM-------LTGCAQHGLGKATVRWFEKMLRNGIAPN----------------  295 (566)
Q Consensus       242 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------  295 (566)
                      ..++.+.|.+.|.++.   ......|+.+       ...+...++..+++..++.-.+  +.|+                
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            5788888888888874   3356788877       4566666666666666665554  2222                


Q ss_pred             ------HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH----HH
Q 047067          296 ------QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTA----AV  365 (566)
Q Consensus       296 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~~  365 (566)
                            ......+...+...|++++|.+.|..+...+  |+......+...+.+.+++++|+..|+.....|+.    ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a  173 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA  173 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence                  1223345567788999999999996655433  54435666777899999999999999987433433    36


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          366 WGALLGACRMHKNVELGAYAAERIFELD--PH-DSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       366 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      +..+..++...|++++|+..++++....  |. .+.....++.++.+.|+.++|..+|+++....
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            7888899999999999999999998543  54 44577889999999999999999999998743

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.45  E-value=1.7e-07  Score=83.34  Aligned_cols=173  Identities=7%  Similarity=-0.057  Sum_probs=105.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047067          235 TLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL  311 (566)
Q Consensus       235 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  311 (566)
                      ..+......|++++|.+.|+.-...   ....|..+...+...|++++|+..|++..+.  .|+...+...        .
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~   78 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------I   78 (198)
T ss_dssp             -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------H
T ss_pred             chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------h
Confidence            3444455566777777766543222   3456777778888888888888888888773  2221100000        0


Q ss_pred             HHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047067          312 LDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERI  389 (566)
Q Consensus       312 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~  389 (566)
                      ...-.   .       ......+..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++
T Consensus        79 ~~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           79 LLDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            00000   0       001356677788888889999998888877 3344 5678888999999999999999999999


Q ss_pred             HhcCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHHhCC
Q 047067          390 FELDPHDSGPHILLANIYASAGRLNDAA-RARKMMKESG  427 (566)
Q Consensus       390 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g  427 (566)
                      ++++|+++.++..+..++...++.+++. ..+..|...|
T Consensus       149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999888887776 5566655433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.45  E-value=1.1e-06  Score=69.16  Aligned_cols=98  Identities=13%  Similarity=0.059  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPH--DSGPHILLANI  406 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~  406 (566)
                      ...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.  ++..+..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            445666777888888888888888876 2233 5678888888899999999999999999999999  88899999999


Q ss_pred             HHhc-CChhHHHHHHHHHHhCCC
Q 047067          407 YASA-GRLNDAARARKMMKESGV  428 (566)
Q Consensus       407 ~~~~-g~~~~a~~~~~~m~~~g~  428 (566)
                      |... |++++|.+.++...+...
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhccc
Confidence            9999 999999999999887543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.43  E-value=7.8e-07  Score=72.63  Aligned_cols=94  Identities=9%  Similarity=0.015  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHH
Q 047067          332 AHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG-------PHIL  402 (566)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~  402 (566)
                      ..+..+...+.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|++..       +|..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            35666788888888888888888876 4455 5678888999999999999999999999998877653       5677


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh
Q 047067          403 LANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       403 l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ++.+|...|++++|.+.+++..+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            88888999999999999988765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.43  E-value=2.2e-06  Score=76.03  Aligned_cols=115  Identities=10%  Similarity=0.007  Sum_probs=62.3

Q ss_pred             hcCCHHHHHH---HHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChH
Q 047067          141 RFDQMDDAWF---LFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLRE----GFEP-THFSYSSVFTALASTGSLE  212 (566)
Q Consensus       141 ~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~~~~~~~~~~  212 (566)
                      ..|++++|.+   .+..-+.....+++.+...+...|++++|+..|++....    +..| ...++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            4577777777   555434345567777777778888888888777776541    1111 2234445555566666666


Q ss_pred             HHHHHHHHHHHh----CCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067          213 QGKWVHAHVIKS----GGQ--LVAFVGNTLVDMYAKSGSIEDAEKVFNR  255 (566)
Q Consensus       213 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~  255 (566)
                      +|...+.+.++.    +-.  .....+..+...|...|++++|...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK  132 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            666666555443    101  1123344445555555555555555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.43  E-value=6.7e-07  Score=75.25  Aligned_cols=104  Identities=7%  Similarity=-0.066  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047067          296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGAC  373 (566)
Q Consensus       296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~  373 (566)
                      ...+..+...+...|++++|...|....... +.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..++
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            3445556666677777777777775555443 335666777777788888888888888776 3344 457788888889


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067          374 RMHKNVELGAYAAERIFELDPHDSGPH  400 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~  400 (566)
                      ...|++++|+..+++++++.|+++...
T Consensus       100 ~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            999999999999999999999887553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.42  E-value=2.5e-06  Score=70.33  Aligned_cols=98  Identities=13%  Similarity=0.049  Sum_probs=84.8

Q ss_pred             ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067          329 PEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI  406 (566)
Q Consensus       329 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  406 (566)
                      .+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++.++..++.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            45667778888888889999998888876 3344 567888899999999999999999999999999999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHhC
Q 047067          407 YASAGRLNDAARARKMMKES  426 (566)
Q Consensus       407 ~~~~g~~~~a~~~~~~m~~~  426 (566)
                      |...|++++|...+++..+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999998764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.42  E-value=2.4e-06  Score=69.69  Aligned_cols=99  Identities=12%  Similarity=0.015  Sum_probs=89.9

Q ss_pred             CccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047067          328 EPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLAN  405 (566)
Q Consensus       328 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  405 (566)
                      +.+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++..|.++.++..++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            345677888999999999999999999987 5455 67889999999999999999999999999999999999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhC
Q 047067          406 IYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       406 ~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +|...|++++|.+.+++..+.
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHh
Confidence            999999999999999998764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.40  E-value=4.2e-05  Score=73.14  Aligned_cols=232  Identities=16%  Similarity=0.127  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHF-SYSSVFTALASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDM  239 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  239 (566)
                      .++.+-....+.+..++|+++++++...  .|+.. .++.--.++...+ .++++...++.++... +.+..+|+.-...
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl  132 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL  132 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            3444444445555566788888777764  34433 3444444444555 3666666666666654 4455555555555


Q ss_pred             HHhc-C-CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047067          240 YAKS-G-SIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGK--------ATVRWFEKMLRNGIAPNQVTFLCVLTAC  306 (566)
Q Consensus       240 ~~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~  306 (566)
                      +.+. + ++++++++++++.+.   |..+|+.-.-.+.+.|.++        ++++.++++++.... |...|+.....+
T Consensus       133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL  211 (349)
T 3q7a_A          133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR  211 (349)
T ss_dssp             HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            5554 4 566666666666433   3445555444444444333        555555555553222 344444444444


Q ss_pred             HccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-----
Q 047067          307 SHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNV-----  379 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-----  379 (566)
                      .+.+...               .             ....++++++.++++ ...| |...|+-+-..+...|+.     
T Consensus       212 ~~l~~~~---------------~-------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~  263 (349)
T 3q7a_A          212 VSRPGAE---------------T-------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPIL  263 (349)
T ss_dssp             TTSTTCC---------------C-------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred             Hhccccc---------------c-------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccc
Confidence            3333200               0             000034455555444 2233 445555544444444332     


Q ss_pred             ---------------HHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          380 ---------------ELGAYAAERIFEL------DPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       380 ---------------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                                     .........+...      ++..+.+...|+++|...|+.++|.++++.+.+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence                           1111222222221      245566777899999999999999999999864

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.39  E-value=0.00025  Score=67.76  Aligned_cols=250  Identities=13%  Similarity=0.027  Sum_probs=157.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047067          132 GSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKS-EGEKALRTFSEMLREGFEPTHFSYSSVFTALAS  207 (566)
Q Consensus       132 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~  207 (566)
                      ++.+-....+.+..++|+++++.+..   .+..+|+.--..+...| .+++++++++.+.... +-+...|+.-...+..
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~  135 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            33444444555566789999998875   36678988888888888 5999999999999864 2355566665555555


Q ss_pred             c-C-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH--------HHHHHHHhcC---CCChhHHHHHHHHHHHc
Q 047067          208 T-G-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIE--------DAEKVFNRLL---KRDVVSWNSMLTGCAQH  274 (566)
Q Consensus       208 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~---~~~~~~~~~li~~~~~~  274 (566)
                      . + +++++..++..+++.. +.+...|+--..++.+.|.++        ++++.++++.   ..|..+|+.....+.+.
T Consensus       136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            5 6 7899999999998765 556777776666666666665        8888888774   45778999998888888


Q ss_pred             CC-------HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH--HHHHHHhHHhhCCCccHHHHHHHHHHhhhc
Q 047067          275 GL-------GKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDE--GQGYFALMKKHGVEPEEAHYVTFVDLLGRA  344 (566)
Q Consensus       275 g~-------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~--a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  344 (566)
                      ++       ++++++.+++++..  .| |...|+.+-..+.+.|....  -..+         .|...   .-++.    
T Consensus       215 ~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~---------~~~~~---~~~~~----  276 (349)
T 3q7a_A          215 PGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAI---------LPYTA---SKLNP----  276 (349)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHH---------GGGTC------------
T ss_pred             cccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccc---------ccccc---ccccc----
Confidence            76       67888888888874  33 45556555444444433200  0000         00000   00000    


Q ss_pred             CCHHHHHHHHHhC-C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHHH
Q 047067          345 GLLDRALKFIREM-P-------IEPTAAVWGALLGACRMHKNVELGAYAAERIF-ELDPHDSGPHIL  402 (566)
Q Consensus       345 g~~~~A~~~~~~~-~-------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~  402 (566)
                       ...+..++..++ +       -.++...+..|...|...|+.++|.++++.+. +.+|-....+..
T Consensus       277 -~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~  342 (349)
T 3q7a_A          277 -DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF  342 (349)
T ss_dssp             ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             -cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence             001111122222 1       12466677777777887888888888888876 567765544443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.39  E-value=2.6e-06  Score=73.88  Aligned_cols=127  Identities=9%  Similarity=0.057  Sum_probs=92.7

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH-hhhcCCH--H
Q 047067          272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL-LGRAGLL--D  348 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~  348 (566)
                      ...|++++|+..+++..+.. +.+...+..+...+...|++++|...|....... +.+...+..+... |...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            34567777888888777642 2356677777788888888888888885555443 2355667777777 7788888  9


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067          349 RALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH  400 (566)
Q Consensus       349 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  400 (566)
                      +|...++++ ...| +...|..+...+...|++++|...+++++++.|+++...
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            999888877 3345 567888888999999999999999999999999886543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.38  E-value=1.6e-06  Score=72.99  Aligned_cols=99  Identities=6%  Similarity=-0.053  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067          298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM  375 (566)
Q Consensus       298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  375 (566)
                      .+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|++. .+.| ++..|..+..++..
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            34444445555555555555554444332 224555666666666666677776666665 3344 34677777777888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCC
Q 047067          376 HKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       376 ~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      .|++++|+..+++++++.|+++
T Consensus       117 lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCHH
Confidence            8888888888888888877653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.38  E-value=3.3e-06  Score=67.82  Aligned_cols=96  Identities=19%  Similarity=0.298  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      ...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            567888899999999999999999987 2234 67889999999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHhC
Q 047067          409 SAGRLNDAARARKMMKES  426 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~~~  426 (566)
                      ..|++++|...++++.+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            999999999999999764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.38  E-value=3.8e-06  Score=66.75  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      ...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            345556666667777777777777665 2233 55666777777777777777777777777777777777777777777


Q ss_pred             hcCChhHHHHHHHHHHhC
Q 047067          409 SAGRLNDAARARKMMKES  426 (566)
Q Consensus       409 ~~g~~~~a~~~~~~m~~~  426 (566)
                      ..|++++|...+++..+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHc
Confidence            777777777777777653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=4.2e-06  Score=69.79  Aligned_cols=96  Identities=15%  Similarity=0.060  Sum_probs=71.3

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      +...+..+...+.+.|++++|.+.|++. ...|+    ...|..+..++...|++++|+..++++++..|.++..+..++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            4556666777777777777777777766 45565    456777777777778888888888888877777777777788


Q ss_pred             HHHHhcCChhHHHHHHHHHHh
Q 047067          405 NIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       405 ~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .+|...|++++|...+++..+
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            888888888888887777765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.37  E-value=0.00016  Score=68.80  Aligned_cols=189  Identities=11%  Similarity=0.068  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC-HHHHHHHH
Q 047067          211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG--SIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGL-GKATVRWF  284 (566)
Q Consensus       211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~  284 (566)
                      ++++..++..++... +-+..+|+.-...+.+.|  .+++++.+++.+.   .+|..+|+.-.-.+...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            455566666666554 445566666555566666  3667777776663   3456667666666666666 46777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc------
Q 047067          285 EKMLRNGIAPNQVTFLCVLTACSHA--------------GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA------  344 (566)
Q Consensus       285 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~------  344 (566)
                      .++++..+. |...|+.....+.+.              +.++++.+.+....... +-|...|+-+-..+.+.      
T Consensus       169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence            777765322 444554444443332              23455555553333322 23444454443333333      


Q ss_pred             -----CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067          345 -----GLLDRALKFIREM-PIEPTAAVWGALLGA-----CRMHKNVELGAYAAERIFELDPHDSGPHILL  403 (566)
Q Consensus       345 -----g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  403 (566)
                           +.++++++.++++ .+.||. .|..+..+     ....|..++....+.++.+++|...+-|.-+
T Consensus       247 ~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~  315 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  315 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence                 3345555555555 334443 23221111     1123445555556666666666554444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.36  E-value=3e-06  Score=70.62  Aligned_cols=105  Identities=10%  Similarity=-0.007  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067          298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM  375 (566)
Q Consensus       298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  375 (566)
                      .+..+...+.+.|++++|...|....... +.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..++..
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            34445555666666666666665444433 234556666777777777777777777766 3334 45677788888889


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047067          376 HKNVELGAYAAERIFELDPHDSGPHILL  403 (566)
Q Consensus       376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l  403 (566)
                      .|++++|...+++++++.|+++......
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~  126 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQPAHEALA  126 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence            9999999999999999988887655443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.35  E-value=0.00011  Score=69.93  Aligned_cols=178  Identities=9%  Similarity=0.047  Sum_probs=132.1

Q ss_pred             HHHHHHHHHhcC---CCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 047067          246 IEDAEKVFNRLL---KRDVVSWNSMLTGCAQHG--LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGL-LDEGQGYF  319 (566)
Q Consensus       246 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~  319 (566)
                      +++++.+++.+.   .++..+|+.-.-.+...|  .++++++.+.++.+...+ |...|+.-...+...|. ++++.+.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            567777777763   457889998888888888  489999999999996433 67777777777777887 68999999


Q ss_pred             HhHHhhCCCccHHHHHHHHHHhhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 047067          320 ALMKKHGVEPEEAHYVTFVDLLGRA--------------GLLDRALKFIREM-PIEP-TAAVWGALLGACRMH-------  376 (566)
Q Consensus       320 ~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------  376 (566)
                      ..+.+.. +-|...|+....++.+.              +.++++++.+.+. ...| |...|+-+-..+...       
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence            7767665 44667777666666554              4578899988877 3345 778888666555544       


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhcCChhHHHHHHHHHHh
Q 047067          377 ----KNVELGAYAAERIFELDPHDSGPHILLANIY---ASAGRLNDAARARKMMKE  425 (566)
Q Consensus       377 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~  425 (566)
                          +.++++++.++++++++|++...+..++...   ...|..++....+.++++
T Consensus       248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence                4578999999999999999865554443322   245777788888888876

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.35  E-value=1.7e-05  Score=67.46  Aligned_cols=94  Identities=10%  Similarity=0.006  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 047067          161 VSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMY  240 (566)
Q Consensus       161 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  240 (566)
                      ..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+...++.. +.+...+..+..+|
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            345555555666666666666666655432 2234444444455555555555555555554443 22333444444444


Q ss_pred             HhcCCHHHHHHHHHhc
Q 047067          241 AKSGSIEDAEKVFNRL  256 (566)
Q Consensus       241 ~~~g~~~~A~~~~~~~  256 (566)
                      ...|++++|...|++.
T Consensus        92 ~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           92 MALGKFRAALRDYETV  107 (166)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHH
Confidence            4444444444444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=1e-05  Score=64.12  Aligned_cols=108  Identities=11%  Similarity=0.054  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067          298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM  375 (566)
Q Consensus       298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  375 (566)
                      .+..+...+...|++++|...+....... +.+...+..+...+.+.|++++|...+++. ...| +...|..+..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34444444555555555555554333322 223445555666666666677766666655 2233 45677778888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067          376 HKNVELGAYAAERIFELDPHDSGPHILLANI  406 (566)
Q Consensus       376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  406 (566)
                      .|++++|...++++++.+|+++..+..+..+
T Consensus        85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            8888888888888888888887666665554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.35  E-value=4.7e-06  Score=67.59  Aligned_cols=109  Identities=9%  Similarity=-0.071  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047067          298 TFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM  375 (566)
Q Consensus       298 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  375 (566)
                      .+..+...+.+.|++++|...|....+.. +.+...|..+..+|.+.|++++|...+++. .+.| +...|..+..++..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34444445555555555555554433332 223455666666666667777776666665 3334 45677778888888


Q ss_pred             cCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 047067          376 HKNVELGAYAAERIFELD------PHDSGPHILLANIY  407 (566)
Q Consensus       376 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~  407 (566)
                      .|++++|...++++++++      |.+......+..+.
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            888888888888888887      77665555555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.33  E-value=5.8e-06  Score=70.70  Aligned_cols=108  Identities=9%  Similarity=-0.008  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047067          296 QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGAC  373 (566)
Q Consensus       296 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~  373 (566)
                      ...+..+...+...|++++|...|....+.. +.+...|..+...|.+.|++++|...|++. .+.| +...|..+..++
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445555556666666666666664444432 224566777777777888888888887776 3345 567889999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          374 RMHKNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       374 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      ...|++++|+..++++++++|+++..+....
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            9999999999999999999999988665443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.30  E-value=2.7e-06  Score=71.08  Aligned_cols=91  Identities=19%  Similarity=0.081  Sum_probs=72.2

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------C
Q 047067          335 VTFVDLLGRAGLLDRALKFIREM-PIEPT-------------AAVWGALLGACRMHKNVELGAYAAERIFEL-------D  393 (566)
Q Consensus       335 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~  393 (566)
                      ......+.+.|++++|...|++. .+.|+             ...|..+..++...|++++|+..+++++++       +
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence            33444555566666666666555 22222             338999999999999999999999999999       9


Q ss_pred             CCCCchH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          394 PHDSGPH----ILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       394 p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      |++...|    ...+.++...|++++|...|++..+
T Consensus        95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            9999999    9999999999999999999999976

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.28  E-value=5.5e-06  Score=67.16  Aligned_cols=97  Identities=18%  Similarity=0.081  Sum_probs=87.6

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY  407 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  407 (566)
                      +...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            4567788889999999999999999987 3344 6788999999999999999999999999999999999999999999


Q ss_pred             HhcCChhHHHHHHHHHHhC
Q 047067          408 ASAGRLNDAARARKMMKES  426 (566)
Q Consensus       408 ~~~g~~~~a~~~~~~m~~~  426 (566)
                      ...|++++|...+++..+.
T Consensus        91 ~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhc
Confidence            9999999999999998874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.27  E-value=3.7e-06  Score=79.27  Aligned_cols=186  Identities=6%  Similarity=-0.058  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA  241 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  241 (566)
                      .+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...+..+++.. +.+...+..+..+|.
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34444444455555555555555444421 1133444444445555555555555555544433 233444555555555


Q ss_pred             hcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047067          242 KSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGY  318 (566)
Q Consensus       242 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  318 (566)
                      ..|++++|...|++..+.   +...+...+....+   ..++. .+.........++......+ ..+ ..|+.++|.+.
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~  157 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERELEE  157 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence            666666666555554211   00001111111111   01111 11122222233333332222 222 25777777777


Q ss_pred             HHhHHhhCCCcc-HHHHHHHHHHhhhc-CCHHHHHHHHHhC
Q 047067          319 FALMKKHGVEPE-EAHYVTFVDLLGRA-GLLDRALKFIREM  357 (566)
Q Consensus       319 ~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~~  357 (566)
                      ++...+.  .|+ ......+...+.+. +.+++|.++|+++
T Consensus       158 ~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          158 CQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             TSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7554433  333 33334444445554 6678888888766

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.25  E-value=6.7e-06  Score=70.13  Aligned_cols=64  Identities=8%  Similarity=0.111  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            3678888888999999999999999999999999999999999999999999999999988764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.24  E-value=1e-05  Score=66.57  Aligned_cols=100  Identities=8%  Similarity=-0.066  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 047067          295 NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGA  372 (566)
Q Consensus       295 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~  372 (566)
                      +...+..+...+...|++++|...|....... +.+...+..+...|...|++++|...+++. ...| +...|..+..+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            34555555555566666666666664444332 223455666666677777777777776665 2234 45677788888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC
Q 047067          373 CRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       373 ~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      +...|++++|+..+++++++.|+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChh
Confidence            88888888888888888887776

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.23  E-value=6e-06  Score=67.11  Aligned_cols=91  Identities=13%  Similarity=0.100  Sum_probs=69.6

Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 047067          336 TFVDLLGRAGLLDRALKFIREM-PIEPT-A---AVWGALLGACRMHKNVELGAYAAERIFELDPHD---SGPHILLANIY  407 (566)
Q Consensus       336 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~  407 (566)
                      .+...+.+.|++++|.+.|++. ...|+ .   ..+..+..++...|++++|...++++++..|++   +.++..++.+|
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            3556677778888888887776 22232 2   466777778888888888888888888888888   66688888888


Q ss_pred             HhcCChhHHHHHHHHHHhC
Q 047067          408 ASAGRLNDAARARKMMKES  426 (566)
Q Consensus       408 ~~~g~~~~a~~~~~~m~~~  426 (566)
                      ...|++++|...++++.+.
T Consensus        87 ~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            8888888888888888764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.21  E-value=1.2e-05  Score=81.55  Aligned_cols=144  Identities=11%  Similarity=0.018  Sum_probs=100.5

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL  340 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  340 (566)
                      ...|..+...|.+.|++++|+..|++.++.  .|+...+           .-+...+.-        ......|..+..+
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~~  326 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKASE--------SFLLAAFLNLAMC  326 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHHHH--------HHHHHHHHHHHHH
Confidence            446666777777777777777777777662  2221000           000000000        0124577788889


Q ss_pred             hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHH
Q 047067          341 LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR  418 (566)
Q Consensus       341 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  418 (566)
                      |.+.|++++|...+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..++.++.+.|+++++.+
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887 3344 577899999999999999999999999999999999999999999999999988764


Q ss_pred             -HHHHHHh
Q 047067          419 -ARKMMKE  425 (566)
Q Consensus       419 -~~~~m~~  425 (566)
                       .++.|..
T Consensus       407 ~~~~~~f~  414 (457)
T 1kt0_A          407 RIYANMFK  414 (457)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHh
Confidence             4555543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.19  E-value=1.4e-05  Score=81.28  Aligned_cols=83  Identities=7%  Similarity=0.031  Sum_probs=43.0

Q ss_pred             HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH
Q 047067          239 MYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDE  314 (566)
Q Consensus       239 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~  314 (566)
                      .|.+.|++++|.+.|++..   ..+..+|..+..+|.+.|++++|++.+++..+.  .| +...+..+..++...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence            3445555555555555542   223455555555555555555555555555553  22 24445555555555555555


Q ss_pred             HHHHHHhHH
Q 047067          315 GQGYFALMK  323 (566)
Q Consensus       315 a~~~~~~~~  323 (566)
                      |.+.|+...
T Consensus        93 A~~~~~~al  101 (477)
T 1wao_1           93 ALRDYETVV  101 (477)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555553333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=3.1e-05  Score=64.37  Aligned_cols=78  Identities=12%  Similarity=-0.030  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      ...+..+...|...|++++|...+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..+..
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            345555666666667777776666655 2233 56677778888888889999999999999988888766666655543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.16  E-value=5.3e-06  Score=84.53  Aligned_cols=116  Identities=9%  Similarity=0.024  Sum_probs=81.5

Q ss_pred             HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047067          305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELG  382 (566)
Q Consensus       305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a  382 (566)
                      .+.+.|++++|...++...+.. +.+...|..+...|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            3445566666666664444432 224566777777777777777777777766 3345 457888888888888999999


Q ss_pred             HHHHHHHHhcCCCCCchHHHHHHH--HHhcCChhHHHHHHH
Q 047067          383 AYAAERIFELDPHDSGPHILLANI--YASAGRLNDAARARK  421 (566)
Q Consensus       383 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~  421 (566)
                      ++.++++++++|++..++..++.+  +.+.|++++|.+.++
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999888888888888777  778888888888877

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.16  E-value=3.4e-05  Score=74.69  Aligned_cols=149  Identities=11%  Similarity=-0.036  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 047067          144 QMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAH  220 (566)
Q Consensus       144 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~  220 (566)
                      ++++|...|+...+   .+...|..+...|.+.|++++|+..|++.....  |+...+           ..+.+..+-  
T Consensus       128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--  192 (336)
T 1p5q_A          128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--  192 (336)
T ss_dssp             EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--
T ss_pred             ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--
Confidence            33444444444332   145567777888888888888888888877643  222000           000000000  


Q ss_pred             HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CH
Q 047067          221 VIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQ  296 (566)
Q Consensus       221 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~  296 (566)
                            +....++..+..+|.+.|++++|+..|++..   ..+..+|..+..+|...|++++|+..|++.++.  .| +.
T Consensus       193 ------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~  264 (336)
T 1p5q_A          193 ------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNK  264 (336)
T ss_dssp             ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCH
T ss_pred             ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence                  0012344555555666666666666665542   234556666666666666666666666666653  23 34


Q ss_pred             HHHHHHHHHHHccCCHHHH
Q 047067          297 VTFLCVLTACSHAGLLDEG  315 (566)
Q Consensus       297 ~t~~~ll~a~~~~g~~~~a  315 (566)
                      ..+..+..++...|+.+++
T Consensus       265 ~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          265 AAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555555666666666665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.15  E-value=7.3e-06  Score=72.60  Aligned_cols=161  Identities=11%  Similarity=-0.005  Sum_probs=77.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047067          134 SLLDMYARFDQMDDAWFLFTALESK---NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS  210 (566)
Q Consensus       134 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~  210 (566)
                      ..+......|+++.|.+.|+.-.+.   ....|..+...+.+.|++++|+..|++.....  |+...+...        .
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~   78 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------I   78 (198)
T ss_dssp             -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------H
T ss_pred             chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------h
Confidence            3344455556677776666644332   44567788888999999999999999988742  211100000        0


Q ss_pred             hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047067          211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKM  287 (566)
Q Consensus       211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  287 (566)
                      .+.-.   .       .....++..+..+|.+.|++++|+..|++..   ..+..+|..+..+|...|++++|+..|++.
T Consensus        79 ~~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           79 LLDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            00000   0       0012334445555555555555555555542   234455555666666666666666666666


Q ss_pred             HHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 047067          288 LRNGIAP-NQVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       288 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~  316 (566)
                      .+.  .| +...+..+..++...++.+++.
T Consensus       149 l~~--~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          149 ASL--NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            553  23 3344444555555555554444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.15  E-value=2e-06  Score=68.95  Aligned_cols=84  Identities=12%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHH
Q 047067          343 RAGLLDRALKFIREM-PI---EPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAA  417 (566)
Q Consensus       343 ~~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~  417 (566)
                      ..|++++|...|++. ..   .|+ ...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            356777777777766 43   243 3577778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhC
Q 047067          418 RARKMMKES  426 (566)
Q Consensus       418 ~~~~~m~~~  426 (566)
                      ..+++..+.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888887653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.14  E-value=8.3e-06  Score=66.12  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD-------SGPHI  401 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~  401 (566)
                      ...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.+       +.++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345677788888889999999888877 2233 66788888889999999999999999999988766       77888


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          402 LLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       402 ~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      .++.+|...|++++|...+++..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999999999999999999999874

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.14  E-value=3.5e-05  Score=77.32  Aligned_cols=162  Identities=7%  Similarity=-0.097  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHccCCHHHHHHHHHhHHh----hCCCc-cHHH
Q 047067          264 WNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQ----VTFLCVLTACSHAGLLDEGQGYFALMKK----HGVEP-EEAH  333 (566)
Q Consensus       264 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~  333 (566)
                      +..+...|...|++++|.+.+.++...- ..++.    ...+.+-..+...|+++++..++.....    .+..+ ...+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            5566777777777777777777665421 11121    1222233333456777777777643322    11122 2456


Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----Cc
Q 047067          334 YVTFVDLLGRAGLLDRALKFIREM-------PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELD---PHD----SG  398 (566)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~  398 (566)
                      +..+...|...|++++|..++++.       .-+|. ..++..++..|...|+++.|...+++++...   +.+    ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            677778888888888888877765       11222 3467777788888888888888888877643   222    13


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          399 PHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       399 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .+..++..+...|++++|...+....+
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            455667777788888888877766643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.12  E-value=2e-05  Score=61.79  Aligned_cols=97  Identities=15%  Similarity=0.044  Sum_probs=56.9

Q ss_pred             HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 047067          300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP---TAAVWGALLGACRM  375 (566)
Q Consensus       300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~  375 (566)
                      ..+...+...|++++|...+....+.. +.+...+..+...|...|++++|.+.+++. ...|   +...|..+..++..
T Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~   88 (112)
T 2kck_A           10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY   88 (112)
T ss_dssp             GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            333444444444444444443333322 223444555566666666666666666655 2233   35677777777777


Q ss_pred             c-CCHHHHHHHHHHHHhcCCCCC
Q 047067          376 H-KNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       376 ~-g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      . |++++|.+.++++++..|+++
T Consensus        89 ~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           89 IEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HhCCHHHHHHHHHHHhhcccCCC
Confidence            7 888888888888887777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.12  E-value=1.5e-05  Score=64.63  Aligned_cols=114  Identities=4%  Similarity=-0.079  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLG  342 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  342 (566)
                      .|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+.......  |             
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~-------------   69 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--R-------------   69 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--H-------------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--c-------------
Confidence            45555555555666666666666555532 1233444444444444455555544443322211  0             


Q ss_pred             hcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          343 RAGLLDRALKFIREMPIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       343 ~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                                     ...++    ..+|..+..++...|++++|...++++++..| ++.....+..++.
T Consensus        70 ---------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           70 ---------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             ---------------HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             ---------------ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence                           00112    45566666777777777777777777777777 3445554444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.12  E-value=2e-05  Score=77.36  Aligned_cols=139  Identities=12%  Similarity=0.038  Sum_probs=104.3

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL  340 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  340 (566)
                      ...|..+...+.+.|++++|+..|++.++.  .|+..          .....+++..       . -+.+...|..+..+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~-------~-~~~~~~~~~nla~~  282 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK-------L-QPVALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG-------G-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH-------H-HHHHHHHHHHHHHH
Confidence            345777777888888888888888877762  11110          0001111110       0 02245678888999


Q ss_pred             hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHH
Q 047067          341 LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAAR  418 (566)
Q Consensus       341 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  418 (566)
                      |.+.|++++|.+.+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..+..++...++.+++.+
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988 5566 567899999999999999999999999999999999999999999999888887764


Q ss_pred             H
Q 047067          419 A  419 (566)
Q Consensus       419 ~  419 (566)
                      .
T Consensus       363 ~  363 (370)
T 1ihg_A          363 A  363 (370)
T ss_dssp             C
T ss_pred             H
Confidence            3

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.08  E-value=4.7e-05  Score=61.81  Aligned_cols=26  Identities=15%  Similarity=0.263  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          264 WNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       264 ~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      |..+..++...|++++|++.|++.+.
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33344444445555555555555444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.08  E-value=2e-05  Score=66.38  Aligned_cols=133  Identities=13%  Similarity=0.067  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL  340 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  340 (566)
                      .++..+...|...|++++|+..+++..+.... ++..                               .....+..+...
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~   58 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA-------------------------------AERIAYSNLGNA   58 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch-------------------------------HHHHHHHHHHHH
Confidence            35566666666777777777777666542100 0100                               001233444445


Q ss_pred             hhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHH
Q 047067          341 LGRAGLLDRALKFIREM----PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDP------HDSGPHILLANI  406 (566)
Q Consensus       341 ~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~  406 (566)
                      |...|++++|.+.+++.    +..++    ..++..+...+...|++++|...+++++++.+      .....+..++.+
T Consensus        59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~  138 (164)
T 3ro3_A           59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA  138 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence            55555555555555443    00111    34556666777777788888877777776421      123467778888


Q ss_pred             HHhcCChhHHHHHHHHHHh
Q 047067          407 YASAGRLNDAARARKMMKE  425 (566)
Q Consensus       407 ~~~~g~~~~a~~~~~~m~~  425 (566)
                      |...|++++|.+.+++..+
T Consensus       139 ~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          139 YTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHH
Confidence            8889999999888887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.08  E-value=0.00025  Score=73.52  Aligned_cols=168  Identities=13%  Similarity=0.010  Sum_probs=124.0

Q ss_pred             HHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 047067          246 IEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGL----------GKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAG--  310 (566)
Q Consensus       246 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--  310 (566)
                      -++|.+.++.+.   ..+..+|+.--..+...|+          ++++++.++++.+...+ +...|..-..++.+.+  
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence            345666666663   2345667766666666666          78888888888875332 5667777777777777  


Q ss_pred             CHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 047067          311 LLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG-LLDRALKFIREM-PIEP-TAAVWGALLGACRMH-----------  376 (566)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------  376 (566)
                      +++++.+.++.+.+.. +-+...|+.-...+.+.| .++++.+.++++ ...| |...|+.....+...           
T Consensus       124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~  202 (567)
T 1dce_A          124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (567)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence            6688888886666654 335666777667777778 788888888887 5555 667888777776552           


Q ss_pred             ---CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH
Q 047067          377 ---KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND  415 (566)
Q Consensus       377 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  415 (566)
                         +.++++++.++++++++|++..+|..+...+.+.++.++
T Consensus       203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence               557999999999999999999999999999999888655

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.06  E-value=1.9e-05  Score=63.57  Aligned_cols=96  Identities=13%  Similarity=0.012  Sum_probs=55.6

Q ss_pred             HHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 047067          301 CVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKN  378 (566)
Q Consensus       301 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~  378 (566)
                      .+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++. .+.| +...|..+..++...|+
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            33444555556666666554444332 224455556666666666677776666665 3344 45567777777777777


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q 047067          379 VELGAYAAERIFELDPHDS  397 (566)
Q Consensus       379 ~~~a~~~~~~~~~~~p~~~  397 (566)
                      +++|+..++++++++|++.
T Consensus       101 ~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHhCcCCC
Confidence            8888888888877777653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.05  E-value=1.7e-05  Score=67.56  Aligned_cols=122  Identities=10%  Similarity=-0.032  Sum_probs=85.0

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHH
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNG------IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHY  334 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  334 (566)
                      ...|......+.+.|++++|+..|.+.+..-      -.|+...+                    ...    -+.+...|
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~   66 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL----DRKNIPLY   66 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH----HHTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH----HHHHHHHH
Confidence            3456667777777777777777777766520      01111100                    000    01234577


Q ss_pred             HHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 047067          335 VTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS-GPHILLANI  406 (566)
Q Consensus       335 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~  406 (566)
                      ..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus        67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV  141 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            78888899999999999998887 4445 567899999999999999999999999999999987 444444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.01  E-value=5.2e-06  Score=66.45  Aligned_cols=92  Identities=14%  Similarity=0.061  Sum_probs=60.8

Q ss_pred             cCCHHHHHHHHHhHHhhC--CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 047067          309 AGLLDEGQGYFALMKKHG--VEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAY  384 (566)
Q Consensus       309 ~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~  384 (566)
                      .|++++|...|+...+.+  -+.+...+..+...|.+.|++++|...|++. ...| +...+..+..++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            355556666664444432  1223456666777777778888887777776 3344 45677778888888888888888


Q ss_pred             HHHHHHhcCCCCCchH
Q 047067          385 AAERIFELDPHDSGPH  400 (566)
Q Consensus       385 ~~~~~~~~~p~~~~~~  400 (566)
                      .++++++..|+++...
T Consensus        83 ~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHH
Confidence            8888888888876543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.00  E-value=9.9e-05  Score=59.66  Aligned_cols=69  Identities=10%  Similarity=-0.061  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047067          333 HYVTFVDLLGRAGLLDRALKFIREM-PIEPT----AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHI  401 (566)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  401 (566)
                      .+..+...|.+.|++++|...+++. ...|+    ...+..+..++...|++++|...++++++..|+++....
T Consensus        41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  114 (129)
T 2xev_A           41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV  114 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence            4445556666666666666666655 22232    456667777788888888888888888888887764433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.00  E-value=2.1e-05  Score=65.68  Aligned_cols=69  Identities=12%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          333 HYVTFVDLLGRAGLLDRALKFIREM--------PIEPTA-AVW----GALLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      .|..+..++.+.|++++|+..+++.        .+.|+. ..|    .....++...|++++|+..|+++++++|++...
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            5566666666666666666665554        348865 588    999999999999999999999999999998766


Q ss_pred             HH
Q 047067          400 HI  401 (566)
Q Consensus       400 ~~  401 (566)
                      ..
T Consensus       139 ~~  140 (159)
T 2hr2_A          139 TP  140 (159)
T ss_dssp             CT
T ss_pred             HH
Confidence            44

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.00  E-value=2.1e-05  Score=76.16  Aligned_cols=147  Identities=7%  Similarity=-0.064  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL  341 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  341 (566)
                      ..|..+...+.+.|++++|+..|++.+..  .|+...       +...++.+++...+.          ...|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            44666777788889999999999988773  455432       223344444433221          13677788889


Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hcCChhHHHH
Q 047067          342 GRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA-SAGRLNDAAR  418 (566)
Q Consensus       342 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~  418 (566)
                      .+.|++++|...+++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..|..+.. ..+..+.+..
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887 3445 56788889999999999999999999999999999888888888744 4567778888


Q ss_pred             HHHHHHhCC
Q 047067          419 ARKMMKESG  427 (566)
Q Consensus       419 ~~~~m~~~g  427 (566)
                      .+++|....
T Consensus       321 ~~~~~l~~~  329 (338)
T 2if4_A          321 MYKGIFKGK  329 (338)
T ss_dssp             ---------
T ss_pred             HHHHhhCCC
Confidence            888887644

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.00032  Score=70.18  Aligned_cols=95  Identities=13%  Similarity=0.032  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C--CCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhh--CC-Cc-c--H
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNG--I--APN-QVTFLCVLTACSHAGLLDEGQGYFALMKKH--GV-EP-E--E  331 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~-~p-~--~  331 (566)
                      ++..+...|...|++++|..++++....-  .  +|. ..++..++..|...|++++|..++......  .+ .| .  .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            45556666666666666666666654321  1  111 335556666666677777776666333221  11 11 1  2


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          332 AHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       332 ~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      ..+..+...+...|++++|...|.+.
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34556666667777777776665544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.96  E-value=1.6e-05  Score=77.00  Aligned_cols=114  Identities=6%  Similarity=-0.033  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047067          297 VTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMH  376 (566)
Q Consensus       297 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~  376 (566)
                      ..+..+...+.+.|++++|...|......  .|+...       +...|+.+++...+.       ...|..+..++...
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~  243 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence            34556666777888888888888655543  233221       233444455444332       13788899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          377 KNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       377 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      |++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.96  E-value=3.6e-05  Score=78.01  Aligned_cols=122  Identities=10%  Similarity=-0.005  Sum_probs=93.9

Q ss_pred             HHccCCHHHHHHHHHhHHhh---CCC---c-cHHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 047067          306 CSHAGLLDEGQGYFALMKKH---GVE---P-EEAHYVTFVDLLGRAGLLDRALKFIREM---------PIEPTA-AVWGA  368 (566)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~---~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~  368 (566)
                      +...|++++|..+++...+.   -+.   | ...+++.|..+|...|++++|..++++.         +..|+. .+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45678888888777433321   111   2 2457888888899999999988888765         445665 58899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          369 LLGACRMHKNVELGAYAAERIFE-----LDPHDSGP---HILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       369 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      |...|...|++++|+.+++++++     ++|+.|.+   ...|..++...|++++|..++.++++.-
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986     46776644   4578888999999999999999998754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.95  E-value=1.8e-05  Score=62.23  Aligned_cols=92  Identities=10%  Similarity=0.011  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHD------SGPHI  401 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  401 (566)
                      +...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4566777888889999999999999887 3344 67788999999999999999999999999999998      66777


Q ss_pred             HHHHHHHhcCChhHHHHHHH
Q 047067          402 LLANIYASAGRLNDAARARK  421 (566)
Q Consensus       402 ~l~~~~~~~g~~~~a~~~~~  421 (566)
                      .++.++...|++++|...++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            78888877777766654433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.92  E-value=5.2e-05  Score=63.81  Aligned_cols=91  Identities=11%  Similarity=0.067  Sum_probs=62.6

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----
Q 047067          230 AFVGNTLVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIA-PN----  295 (566)
Q Consensus       230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----  295 (566)
                      ..++..+...|...|++++|...|++..+     .+    ..++..+...|...|++++|+..+++..+.... ++    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            45678888999999999999999988632     12    246777888888899999999988887653110 11    


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHH
Q 047067          296 QVTFLCVLTACSHAGLLDEGQGYFA  320 (566)
Q Consensus       296 ~~t~~~ll~a~~~~g~~~~a~~~~~  320 (566)
                      ...+..+...+...|++++|...+.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~  113 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHL  113 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            2344455555555666666666553

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.88  E-value=6.1e-05  Score=58.13  Aligned_cols=65  Identities=23%  Similarity=0.178  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56789999999999999999999999999999999999999999999999999999999998763

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.86  E-value=9.8e-06  Score=67.53  Aligned_cols=86  Identities=14%  Similarity=0.107  Sum_probs=69.4

Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067          342 GRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKN----------VELGAYAAERIFELDPHDSGPHILLANIYAS  409 (566)
Q Consensus       342 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  409 (566)
                      .+.+.+++|.+.+++. ...| +...|..+..++...++          +++|+..++++++++|++..+|..++++|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3456677777777766 3345 56677777777776665          4699999999999999999999999999998


Q ss_pred             cC-----------ChhHHHHHHHHHHhCC
Q 047067          410 AG-----------RLNDAARARKMMKESG  427 (566)
Q Consensus       410 ~g-----------~~~~a~~~~~~m~~~g  427 (566)
                      .|           ++++|.+.|++..+..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            75           8999999999998743

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.86  E-value=9.1e-05  Score=72.56  Aligned_cols=65  Identities=11%  Similarity=0.008  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            45788899999999999999999999999999999999999999999999999999999999874

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.86  E-value=4.1e-05  Score=60.81  Aligned_cols=78  Identities=13%  Similarity=0.058  Sum_probs=66.9

Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          349 RALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       349 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +|.+.|++. ...| +...|..+...+...|++++|+..++++++++|.++.++..++.+|...|++++|...+++..+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            355556555 3455 56788999999999999999999999999999999999999999999999999999999998763

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.86  E-value=0.00017  Score=73.00  Aligned_cols=97  Identities=9%  Similarity=-0.037  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT----------------AAVWGALLGACRMHKNVELGAYAAERIFELD  393 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  393 (566)
                      ...|..+...|.+.|++++|...|++. .+.|+                ...|..+..++...|++++|+..++++++++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            345556666777777777777777665 21222                5788999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          394 PHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       394 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      |+++.+|..++.+|...|++++|...|++..+..
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999998743

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.84  E-value=8.6e-05  Score=55.70  Aligned_cols=82  Identities=18%  Similarity=0.312  Sum_probs=65.8

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIY  407 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  407 (566)
                      +...+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|.++.++..++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3456677778888888888888888776 3334 5678888888899999999999999999999999988888888887


Q ss_pred             HhcC
Q 047067          408 ASAG  411 (566)
Q Consensus       408 ~~~g  411 (566)
                      ...|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            7654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.72  E-value=0.00013  Score=73.95  Aligned_cols=116  Identities=11%  Similarity=0.058  Sum_probs=89.2

Q ss_pred             HHhhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chH
Q 047067          339 DLLGRAGLLDRALKFIREM---------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFE-----LDPHDS---GPH  400 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~  400 (566)
                      ..+...|++++|..++++.         +-.|+. .+++.|..+|...|++++|+.+++++++     ++|+.|   .++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3466889999999988765         334554 5899999999999999999999999986     355554   467


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 047067          401 ILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIKQ  472 (566)
Q Consensus       401 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~  472 (566)
                      ..|+.+|..+|++++|..++++..+--..                  .-...||...++...+.+...+++.
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999998752110                  1123789988888777776655543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.65  E-value=0.00017  Score=71.89  Aligned_cols=116  Identities=12%  Similarity=0.121  Sum_probs=88.4

Q ss_pred             HHHhhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---ch
Q 047067          338 VDLLGRAGLLDRALKFIREM---------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFE-----LDPHDS---GP  399 (566)
Q Consensus       338 i~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~  399 (566)
                      +..+.+.|++++|.+++++.         +..|+. .+++.|..+|...|++++|+.+++++++     ++|+.|   ..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            45566788999998888765         223333 5889999999999999999999999986     345544   46


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 047067          400 HILLANIYASAGRLNDAARARKMMKESGVKKEPACSWVETKNAVHMFVANDDAHPQRAMIHKKWREISEKIK  471 (566)
Q Consensus       400 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~  471 (566)
                      +..|+.+|..+|++++|..++++..+--..                  .-...||...++...+.+....|+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence            788999999999999999999998752100                  112378999998888888777665

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.61  E-value=0.00033  Score=52.98  Aligned_cols=68  Identities=18%  Similarity=0.124  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          361 PTAAVWGALLGACRMHKN---VELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       361 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      +|+..|..+..++...++   .++|..+++++++++|+++.+...++..+.+.|++++|...|+++.+...
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            467788888888765554   79999999999999999999999999999999999999999999998654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.00028  Score=55.12  Aligned_cols=67  Identities=6%  Similarity=-0.118  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          361 PTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       361 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ++...|..+...+...|++++|+..+++++++.|.++.++..++.+|...|++++|...+++..+..
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3567788899999999999999999999999999999999999999999999999999999998743

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.51  E-value=0.00018  Score=71.64  Aligned_cols=83  Identities=11%  Similarity=0.045  Sum_probs=67.2

Q ss_pred             hcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---chHHHHH
Q 047067          343 RAGLLDRALKFIREM---------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFE-----LDPHDS---GPHILLA  404 (566)
Q Consensus       343 ~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~  404 (566)
                      ..|++++|..++++.         +..|+. .+++.|..+|...|++++|+.+++++++     ++|+.+   .+++.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457788888877664         334554 5889999999999999999999999986     345544   4678899


Q ss_pred             HHHHhcCChhHHHHHHHHHHh
Q 047067          405 NIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       405 ~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .+|..+|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999998875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.49  E-value=0.0012  Score=54.20  Aligned_cols=90  Identities=9%  Similarity=-0.011  Sum_probs=54.2

Q ss_pred             HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 047067          337 FVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRM----HKNVELGAYAAERIFELDPHDSGPHILLANIYAS---  409 (566)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  409 (566)
                      |..+|...+.+++|.++|++.--.-+...+..|...|..    .++.++|...++++.+.  .++.++..|+.+|..   
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence            444455555555555555554112345555555555555    56667777777776665  345566777777777   


Q ss_pred             -cCChhHHHHHHHHHHhCCC
Q 047067          410 -AGRLNDAARARKMMKESGV  428 (566)
Q Consensus       410 -~g~~~~a~~~~~~m~~~g~  428 (566)
                       .+++++|.+.+++..+.|.
T Consensus       109 ~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHTTC
T ss_pred             CCcCHHHHHHHHHHHHHCCC
Confidence             6777777777777766654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.48  E-value=0.0019  Score=66.93  Aligned_cols=150  Identities=9%  Similarity=0.051  Sum_probs=119.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC----------HHHHHHHHHhHHhhCCCccHHHHHHHHHHhh
Q 047067          274 HGLGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGL----------LDEGQGYFALMKKHGVEPEEAHYVTFVDLLG  342 (566)
Q Consensus       274 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  342 (566)
                      ....++|++.++++++.  .|+ ...|+.--.++...|+          ++++...++.+.+.. +-+...|+.-.-++.
T Consensus        42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS  118 (567)
T ss_dssp             TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34457889999999994  555 4556555555666666          899999997777655 346677887777888


Q ss_pred             hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-------
Q 047067          343 RAG--LLDRALKFIREM-PIEP-TAAVWGALLGACRMHK-NVELGAYAAERIFELDPHDSGPHILLANIYASA-------  410 (566)
Q Consensus       343 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------  410 (566)
                      +.|  +++++.++++++ ...| +...|+.-.......| ..+++++.++++++.+|.+..+|...+.++.+.       
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence            889  779999999998 4444 7789998888888888 899999999999999999999999999988774       


Q ss_pred             -------CChhHHHHHHHHHHhC
Q 047067          411 -------GRLNDAARARKMMKES  426 (566)
Q Consensus       411 -------g~~~~a~~~~~~m~~~  426 (566)
                             +.++++.+.+++....
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHhh
Confidence                   5678888888887753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.39  E-value=0.00018  Score=59.96  Aligned_cols=100  Identities=10%  Similarity=0.026  Sum_probs=60.4

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067          272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL  351 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  351 (566)
                      .+.+++++|++.+++..+.. +-+...|..+..++...++++.+....                         +.+++|+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi   66 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAI   66 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHH
Confidence            34455666666666666532 113445555555555444433221111                         1245677


Q ss_pred             HHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCC
Q 047067          352 KFIREM-PIEP-TAAVWGALLGACRMH-----------KNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       352 ~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      ..|++. .+.| +..+|..+..+|...           |++++|++.|+++++++|++.
T Consensus        67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            766666 4455 345777777777665           589999999999999999985

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.35  E-value=0.00068  Score=50.55  Aligned_cols=65  Identities=22%  Similarity=0.270  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +...|..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34678888889999999999999999999999999999999999999999999999999998874

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.25  E-value=0.007  Score=49.52  Aligned_cols=108  Identities=14%  Similarity=0.004  Sum_probs=51.2

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 047067          175 EGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK----SGSIEDAE  250 (566)
Q Consensus       175 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~  250 (566)
                      ++++|++.|++..+.| .|+..    +...+...+..+.|...+++..+.|   +......|..+|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4555666666655554 22222    3344444445555555555555543   33344444444544    44555555


Q ss_pred             HHHHhcC-CCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Q 047067          251 KVFNRLL-KRDVVSWNSMLTGCAQ----HGLGKATVRWFEKMLRN  290 (566)
Q Consensus       251 ~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~  290 (566)
                      +.|++.. ..++.++..|...|..    .++.++|+.+|++..+.
T Consensus        82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            5554442 2234444444444444    44445555555444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.19  E-value=0.0013  Score=51.84  Aligned_cols=66  Identities=15%  Similarity=0.092  Sum_probs=46.2

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      +...+..+...|.+.|++++|...+++. ...| +...|..+..++...|++++|...+++++++.|.
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4556666666777777777777777665 2234 4567777777788888888888888888877664

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.12  E-value=0.008  Score=57.40  Aligned_cols=142  Identities=12%  Similarity=0.086  Sum_probs=68.3

Q ss_pred             CCCChhHHHHHHHHHH--HcC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067          257 LKRDVVSWNSMLTGCA--QHG---LGKATVRWFEKMLRNGIAPN-QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE  330 (566)
Q Consensus       257 ~~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~  330 (566)
                      ...+..+|...+.+..  ..+   ...+|+.+|++.++  ..|+ ...+..+..++...             ...+.. +
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~-------------~~~~~~-~  253 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVR-------------HSQHPL-D  253 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-------------HHHSCC-C
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH-------------hccCCC-c
Confidence            3446777777776643  223   34788999999988  4666 34444444333300             000100 0


Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREMPI-EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS  409 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  409 (566)
                      ......          +..|.+....+.. ..+..+|..+...+...|++++|...++++++++|+ ...|..++.++.-
T Consensus       254 ~~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~  322 (372)
T 3ly7_A          254 EKQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM  322 (372)
T ss_dssp             HHHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred             hhhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence            000000          0112221222211 224445555444444455566666666666655543 3344555555555


Q ss_pred             cCChhHHHHHHHHHHh
Q 047067          410 AGRLNDAARARKMMKE  425 (566)
Q Consensus       410 ~g~~~~a~~~~~~m~~  425 (566)
                      .|++++|...+++...
T Consensus       323 ~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          323 KGMNREAADAYLTAFN  338 (372)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            5666666555555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.05  E-value=0.0032  Score=62.53  Aligned_cols=91  Identities=12%  Similarity=-0.028  Sum_probs=66.5

Q ss_pred             cCCHHHHHHHHHhHHhh---CCCc----cHHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 047067          309 AGLLDEGQGYFALMKKH---GVEP----EEAHYVTFVDLLGRAGLLDRALKFIREM---------PIEPTA-AVWGALLG  371 (566)
Q Consensus       309 ~g~~~~a~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~  371 (566)
                      .|++++|..+++.....   -+.|    ...+++.|..+|...|++++|..++++.         +..|+. .+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46677777777433321   1112    2457788888888888888888888765         445665 58899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 047067          372 ACRMHKNVELGAYAAERIFE-----LDPHDSGP  399 (566)
Q Consensus       372 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~  399 (566)
                      .|...|++++|+.+++++++     ++|+.|.+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            99999999999999999986     46877644

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.94  E-value=0.0061  Score=50.09  Aligned_cols=66  Identities=9%  Similarity=-0.042  Sum_probs=52.5

Q ss_pred             CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          360 EPTAAVWGALLGACRMHK---NVELGAYAAERIFELD-P-HDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       360 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .++..+.-.+..++.+.+   +.++++.+++.+++.+ | .+...+..|+-+|.+.|++++|+++++.+.+
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            357777777777777777   5668888888888877 6 4566788888888999999999999888876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.94  E-value=0.0076  Score=59.94  Aligned_cols=98  Identities=9%  Similarity=-0.092  Sum_probs=68.9

Q ss_pred             HHHHccCCHHHHHHHHHhHHhh---CCCc----cHHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCCH-HHH
Q 047067          304 TACSHAGLLDEGQGYFALMKKH---GVEP----EEAHYVTFVDLLGRAGLLDRALKFIREM---------PIEPTA-AVW  366 (566)
Q Consensus       304 ~a~~~~g~~~~a~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~  366 (566)
                      ..+.+.|++++|...++...+.   -+.|    ...+++.|..+|...|++++|..++++.         +..|+. .++
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3444566777777776443321   1112    2456777888888888888888877765         445655 588


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchHH
Q 047067          367 GALLGACRMHKNVELGAYAAERIFE-----LDPHDSGPHI  401 (566)
Q Consensus       367 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~  401 (566)
                      +.|...|...|++++|+.+++++++     ++|+.|.+-.
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            9999999999999999999999986     4787765443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.90  E-value=0.0022  Score=48.70  Aligned_cols=61  Identities=20%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          339 DLLGRAGLLDRALKFIREM-PIEP-TAA-VWGALLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       339 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      ..+.+.|++++|...+++. ...| +.. .|..+..++...|++++|+..++++++++|+++.+
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   71 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL   71 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            3444455555555555444 2222 233 44444455555555555555555555555554433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.84  E-value=0.0059  Score=46.25  Aligned_cols=54  Identities=9%  Similarity=0.104  Sum_probs=30.4

Q ss_pred             HHHHHccCCHHHHHHHHHhHHhhCCCccHH-HHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          303 LTACSHAGLLDEGQGYFALMKKHGVEPEEA-HYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       303 l~a~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      ...+...|++++|...++...+.. +.+.. .+..+...|.+.|++++|.+.|++.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555666666666664444432 22334 5555666666666666666666655

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.77  E-value=0.063  Score=58.27  Aligned_cols=102  Identities=20%  Similarity=0.213  Sum_probs=70.9

Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047067          137 DMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKW  216 (566)
Q Consensus       137 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~  216 (566)
                      .....+|++++|.++.+.+.  +...|..+...+.+.++++.|.+.|.++..         |..+...+...++.+....
T Consensus       660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~  728 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT  728 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred             ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence            34566799999999887764  567899999999999999999999998743         3344455555677766665


Q ss_pred             HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067          217 VHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNR  255 (566)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  255 (566)
                      +-+.....|.      ++....+|.+.|++++|.+++.+
T Consensus       729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555441      23344556667777777776554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.67  E-value=0.009  Score=45.55  Aligned_cols=58  Identities=9%  Similarity=0.119  Sum_probs=25.7

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF  319 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  319 (566)
                      ...|..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|...+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~   64 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTY   64 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3344444444444444444444444444421 112334444444444444444444444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.57  E-value=0.1  Score=56.59  Aligned_cols=47  Identities=15%  Similarity=0.137  Sum_probs=26.4

Q ss_pred             HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047067          240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKML  288 (566)
Q Consensus       240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  288 (566)
                      ...+|+++.|.++.+.+  .+...|..+...+.+.|+++.|.+.|.++.
T Consensus       662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            34455666665555444  234556666666666666666666666553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.51  E-value=0.0093  Score=54.59  Aligned_cols=87  Identities=16%  Similarity=0.160  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CChhH
Q 047067          347 LDRALKFIREM-PIEPT---AAVWGALLGACRM-----HKNVELGAYAAERIFELDPHD-SGPHILLANIYASA-GRLND  415 (566)
Q Consensus       347 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~  415 (566)
                      ..+|...+++. .+.|+   ...|..|...|..     -|+.+.|.+.|+++++++|+. ..+++..+..++.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            45666667666 56776   4688888888888     499999999999999999975 99999999999985 99999


Q ss_pred             HHHHHHHHHhCCCccCCc
Q 047067          416 AARARKMMKESGVKKEPA  433 (566)
Q Consensus       416 a~~~~~~m~~~g~~~~~~  433 (566)
                      +.+.+++.........|+
T Consensus       259 a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          259 FDEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSS
T ss_pred             HHHHHHHHHcCCCCCCCC
Confidence            999999999877654443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.33  E-value=0.00039  Score=67.78  Aligned_cols=238  Identities=9%  Similarity=0.027  Sum_probs=164.2

Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHcc
Q 047067           26 DIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASGA  105 (566)
Q Consensus        26 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~  105 (566)
                      .+.+|..|..++.+.++..+|.+.|  +...|+..|..+|.+..+.|.+++-+..+...++..-.|.  .=+.++-+|++
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk  128 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK  128 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence            4667888888888888888888776  4456777888999999999999988888766555433333  33567778888


Q ss_pred             CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC------------------------CChH
Q 047067          106 GATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES------------------------KNEV  161 (566)
Q Consensus       106 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~  161 (566)
                      .+++. ..+.+.       -.|+..-...+.+-+...|.++.|.-+|..+..                        .++.
T Consensus       129 ~~rL~-elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k  200 (624)
T 3lvg_A          129 TNRLA-ELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR  200 (624)
T ss_dssp             SCSSS-TTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred             hCcHH-HHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            88776 222111       135555567777888888888888888877652                        3677


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYA  241 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  241 (566)
                      +|-.+-.+|...+.+.-|.-.--.+.-   .||.  ...++..|...|.+++-..+++.-+... .....+++-|.-.|+
T Consensus       201 tWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs  274 (624)
T 3lvg_A          201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS  274 (624)
T ss_dssp             SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence            899999999999988887655444432   2222  2345566778888888877777665322 456777888888888


Q ss_pred             hcCCHHHHHHHHHhc----CCC-------ChhHHHHHHHHHHHcCCHHHHHH
Q 047067          242 KSGSIEDAEKVFNRL----LKR-------DVVSWNSMLTGCAQHGLGKATVR  282 (566)
Q Consensus       242 ~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~~A~~  282 (566)
                      |- ++++-.+.++..    .-|       ....|..++-.|.+..+++.|..
T Consensus       275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            75 344444444332    112       45678889988988888887753

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.31  E-value=0.026  Score=43.38  Aligned_cols=74  Identities=11%  Similarity=0.082  Sum_probs=55.7

Q ss_pred             cHHHHHHHHHHhhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067          330 EEAHYVTFVDLLGRAGLLDRALKFIREM-----P----IEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH  400 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  400 (566)
                      +..-+..|...+.+.|+++.|...|+..     +    -.+...++..|..++.+.|+++.|...++++++++|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3344556677777777777777777665     1    123457888999999999999999999999999999997665


Q ss_pred             HHH
Q 047067          401 ILL  403 (566)
Q Consensus       401 ~~l  403 (566)
                      ..+
T Consensus        84 ~n~   86 (104)
T 2v5f_A           84 GNL   86 (104)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.15  Score=42.99  Aligned_cols=130  Identities=10%  Similarity=0.095  Sum_probs=83.7

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067          237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  316 (566)
                      .+...++|+++.|.++.+.+  .+...|..|.......|+++-|.+.|.+...         |..+.-.|.-.|+.+.-.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            34456688888888887766  4577888888888888888888888887654         233444455567776665


Q ss_pred             HHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047067          317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERI  389 (566)
Q Consensus       317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  389 (566)
                      .+-+.....|      -++.....+.-.|+++++.+++.+.+.-|....      ....+|..+.|.++.+++
T Consensus        81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence            5554444333      134444556677888888888888763332221      123466667776666554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.10  E-value=0.069  Score=50.98  Aligned_cols=38  Identities=11%  Similarity=-0.137  Sum_probs=33.8

Q ss_pred             HhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          390 FELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       390 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      +..+|.++.+|..++..+...|++++|...++++...+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln  307 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE  307 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            35679999999999998888899999999999999875

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.07  E-value=0.035  Score=41.61  Aligned_cols=70  Identities=7%  Similarity=0.012  Sum_probs=54.7

Q ss_pred             CccHHHHHHHHHHhhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067          328 EPEEAHYVTFVDLLGRAGL---LDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       328 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      +.+...+..+..++...++   .++|..++++. ...| ++..+..+...+...|++++|+..|+++++.+|.++
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            4566677777777765444   68999999887 4456 556777788889999999999999999999998844

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.88  E-value=0.049  Score=44.70  Aligned_cols=71  Identities=11%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             ccHHHHHHHHHHhhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          329 PEEAHYVTFVDLLGRAG---LLDRALKFIREM-PIE-P--TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       329 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      ++..+.-.+.-++.+.+   +++++..++++. ... |  +...+-.|.-++.+.|++++|.+.++++++.+|++..+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            44555555555666655   444666666655 212 4  23455566777899999999999999999999998633

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.83  E-value=0.52  Score=37.33  Aligned_cols=140  Identities=10%  Similarity=-0.003  Sum_probs=96.5

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHH
Q 047067          272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRAL  351 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  351 (566)
                      .-.|..++..++..+.....   +..-|+-+|--....-+-+-..++++..   |-..|          ...+|++....
T Consensus        18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFD----------is~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFD----------LDKCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSC----------GGGCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHH---hhhcC----------cHhhhcHHHHH
Confidence            34566777777777766532   3344444443333333333333333221   11112          24678888888


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067          352 KFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK  429 (566)
Q Consensus       352 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~  429 (566)
                      ..+-.++  .+....+..+......|+-+.-.++...++.-+|.++.....++++|.+.|+..+|.+++.+.-++|++
T Consensus        82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            8888875  355566777888899999999999999987777778889999999999999999999999999999984

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.70  E-value=2.3  Score=43.95  Aligned_cols=251  Identities=8%  Similarity=0.019  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047067          131 VGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS  210 (566)
Q Consensus       131 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~  210 (566)
                      .-+.-+..+.+.+++.....++.. +..+...--....+....|+..+|......+=..| ...+.....++..+.+.|.
T Consensus        74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~  151 (618)
T 1qsa_A           74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK  151 (618)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence            334455566667777777776655 33344444445556666777666666666554444 2223334445555554443


Q ss_pred             hHH--HHHHHHHHHHhC-----------CCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHHH
Q 047067          211 LEQ--GKWVHAHVIKSG-----------GQLVA-FVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVV---SWNSMLTGCAQ  273 (566)
Q Consensus       211 ~~~--a~~~~~~~~~~~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~  273 (566)
                      +..  ..+=+..+...|           ++++. .....++..+.+-..+   ....... .++..   .+..-+.-+.+
T Consensus       152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar  227 (618)
T 1qsa_A          152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR  227 (618)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh
Confidence            322  111111111111           11111 1222223222222221   2222211 11111   11112222333


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHH
Q 047067          274 HGLGKATVRWFEKMLRNGIAPNQVTF----LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDR  349 (566)
Q Consensus       274 ~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  349 (566)
                       .+.+.|..+|......+ ..+....    ..+.......+...++...+.......  ++.....-.+....+.|+++.
T Consensus       228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~  303 (618)
T 1qsa_A          228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG  303 (618)
T ss_dssp             -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred             -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHH
Confidence             36788888888776543 2232222    222222333442444555553333222  232223334444456788888


Q ss_pred             HHHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          350 ALKFIREMPIEP-TAAVW-GALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       350 A~~~~~~~~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      |...|+.|+-.+ +..-| -=+..+....|+.++|..+++++.+
T Consensus       304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            888888885332 21211 1233456677888888888888765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.79  Score=38.52  Aligned_cols=104  Identities=12%  Similarity=0.134  Sum_probs=72.2

Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 047067          137 DMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKW  216 (566)
Q Consensus       137 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~  216 (566)
                      +....+|+++.|.++-+.+  .+...|..|.....+.|+++-|.+.|.+...         |..+.-.|...|+.+.-..
T Consensus        13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence            4466789999999988776  4678899999999999999999999987743         3444445555677666655


Q ss_pred             HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 047067          217 VHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL  257 (566)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  257 (566)
                      +-+.....| .     ++.....+.-.|+++++.++|.+..
T Consensus        82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence            555444444 1     2334445556777777777776543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.05  E-value=0.15  Score=40.15  Aligned_cols=65  Identities=8%  Similarity=-0.090  Sum_probs=30.2

Q ss_pred             CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          361 PTAAVWGALLGACRMHKNVEL---GAYAAERIFELD-P-HDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       361 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      |+..+--.+..++....+...   ++.+++.++..+ | ........|+-++.+.|++++|++..+.+.+
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333333333444444443332   555555555443 3 2223444555555555555555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.31  E-value=0.59  Score=42.81  Aligned_cols=113  Identities=17%  Similarity=0.164  Sum_probs=59.8

Q ss_pred             cCCHHHHHHHHHhcCCCCh--hHHHHHHHH-HHHc--C------CHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 047067          243 SGSIEDAEKVFNRLLKRDV--VSWNSMLTG-CAQH--G------LGKATVRWFEKMLRNGIAPN---QVTFLCVLTACSH  308 (566)
Q Consensus       243 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~  308 (566)
                      .|+..+-.+.+.++.+.++  ..|..++.+ +...  |      ....|...+++.++  +.|+   ...|..+...|.+
T Consensus       134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~  211 (301)
T 3u64_A          134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA  211 (301)
T ss_dssp             SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence            3444444555555544333  356655543 3332  2      23455566666666  4555   3456666666666


Q ss_pred             c-----CCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhc-CCHHHHHHHHHhC
Q 047067          309 A-----GLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRA-GLLDRALKFIREM  357 (566)
Q Consensus       309 ~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~  357 (566)
                      .     |+.++|.+.|++..+.+..-+..++..+.+.|++. |+.++|.+.+++.
T Consensus       212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3     66666666665555543222345555555666553 6666666666554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.25  E-value=0.42  Score=50.46  Aligned_cols=54  Identities=17%  Similarity=-0.021  Sum_probs=49.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 047067          371 GACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMK  424 (566)
Q Consensus       371 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  424 (566)
                      .-|...|+++.|+++.++++..-|++..+|..|+.+|.+.|+|+.|.-.+..+-
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            336678999999999999999999999999999999999999999999998873

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.03  E-value=0.23  Score=37.84  Aligned_cols=65  Identities=15%  Similarity=-0.053  Sum_probs=54.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          362 TAAVWGALLGACRMHKNVELGAYAAERIFELD-------PHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +..-+-.|...+...|+++.|...++++++..       +..+.++..|+.+|.+.|++++|...++++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45556678888999999999999999999752       334567889999999999999999999999763

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.79  E-value=2.1  Score=34.29  Aligned_cols=66  Identities=14%  Similarity=-0.029  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          360 EPTAAVWGALLGACRMHK---NVELGAYAAERIFELDPH-DSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       360 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .|+..+--.+..++.+..   +..+++.+++.++..+|. .......|+-+|.+.|++++|+++.+.+.+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            345544444445555444   345677777777776664 334555677777888888888887777765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.26  E-value=0.19  Score=40.64  Aligned_cols=54  Identities=13%  Similarity=-0.015  Sum_probs=40.9

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047067          375 MHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGV  428 (566)
Q Consensus       375 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  428 (566)
                      ..+|.++|.++|+.++.+...-+..+...+..-.+.|+...|++++.+....+.
T Consensus        72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            337888888888888877554455666777777788888889888888887554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.35  E-value=1.6  Score=34.31  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=46.1

Q ss_pred             ccHHHHHHHHHHhhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 047067          329 PEEAHYVTFVDLLGRAGLLDR---ALKFIREM-PIE-P--TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPH  400 (566)
Q Consensus       329 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  400 (566)
                      |+..+--.+.-++.+.....+   +..++++. ... |  .....-.|.-++.+.|+++.|.+.++.+++.+|+|..+.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            444444445555666555544   56666655 212 3  122344556678899999999999999999999987443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=90.28  E-value=5.8  Score=31.49  Aligned_cols=139  Identities=12%  Similarity=0.021  Sum_probs=80.1

Q ss_pred             hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 047067          172 RKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEK  251 (566)
Q Consensus       172 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  251 (566)
                      -.|..++..++..+....   .+..-|+.++--....-+-+-..++++.+   |--.|          ...||++.....
T Consensus        19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFD----------is~C~NlKrVi~   82 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFD----------LDKCQNLKSVVE   82 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSC----------GGGCSCTHHHHH
T ss_pred             HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH---hhhcC----------cHhhhcHHHHHH
Confidence            346666666666665542   23344444444333333333333333322   21111          124555555555


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC
Q 047067          252 VFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE  328 (566)
Q Consensus       252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  328 (566)
                      .+-.+.. +....+.-+..+...|+-++-.+++..+... .+|++.....+..||.+.|+..++.+++...-+.|++
T Consensus        83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            5554432 3344555677777888888888888875442 5677778888888888888888888888766776654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.25  E-value=0.66  Score=45.19  Aligned_cols=67  Identities=19%  Similarity=0.084  Sum_probs=51.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCCc
Q 047067          367 GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE-----SGVKKEPA  433 (566)
Q Consensus       367 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~  433 (566)
                      ..++.++...|+.+++...++.++..+|-+...+..|+.+|.+.|+..+|.+.|+...+     .|+.|.|.
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            44556667788888888888888888888888888888888888888888888877653     47766553

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.21  E-value=12  Score=35.02  Aligned_cols=136  Identities=10%  Similarity=0.064  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHH----HHHHHHCCCCCChhHHHHHHHHH
Q 047067           28 AMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIIL----FSQMLRLGLKPNQFTLSSVLKAS  103 (566)
Q Consensus        28 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~  103 (566)
                      ..+.++..-|.+.+++++|++++-.           -...+.+.|+...|-++    .+-+.+.++++|..+...++..+
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~  104 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL  104 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            4677788889999999999988643           23345566776655444    45556678889988888888877


Q ss_pred             ccCCCchH----HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCC
Q 047067          104 GAGATDDK----FGRQVHAFCLKYG--YDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKS  174 (566)
Q Consensus       104 ~~~~~~~~----~~~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g  174 (566)
                      ......+.    ...+...+-.+.|  -.-|+.....+...|.+.+++.+|+.-|=.-.++.+..+..|+.-+.+.+
T Consensus       105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~  181 (336)
T 3lpz_A          105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD  181 (336)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred             HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            76654331    2223333444444  23467778888889999999999988874322222356655554444444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=90.04  E-value=1.6  Score=35.32  Aligned_cols=112  Identities=12%  Similarity=0.112  Sum_probs=68.4

Q ss_pred             CCCChhHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc
Q 047067          257 LKRDVVSWNSMLTGCAQHGLG------KATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE  330 (566)
Q Consensus       257 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~  330 (566)
                      ...|..+|-..+...-+.|++      ++.+++|++.... ++|+..            +.++.=..++   .       
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~------------~~wrrYI~LW---I-------   65 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKY------------GQNESFARIQ---V-------   65 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGG------------TTCHHHHHHH---H-------
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcccc------------ccHHHHHHHH---H-------
Confidence            345777888777777777877      7777777777664 555421            1111111111   0       


Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067          331 EAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       331 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                        -|..    +...+++++|.++|+.+ .+ +.=..+|-....--.++|+++.|.+++.+++.+.|.+.
T Consensus        66 --rYA~----~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           66 --RFAE----LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             --HHHH----HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             --HHHH----HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence              0111    12225666777776665 10 11167787777777889999999999999999888764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.79  E-value=1.9  Score=34.12  Aligned_cols=47  Identities=17%  Similarity=0.060  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          379 VELGAYAAERIFELDPH-DSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       379 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ..+++.+++.+++.+|. ....+..|+-++.+.|++++|+++.+.+.+
T Consensus        59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            34566666666665553 234455666666777777777766666654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=88.09  E-value=2.8e-05  Score=75.57  Aligned_cols=259  Identities=12%  Similarity=0.068  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047067          130 YVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTG  209 (566)
Q Consensus       130 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~  209 (566)
                      .+|.-|..++.+.+++.+|.+-|  +...|+..|..+|.+..+.|.+++-+..+.-.++..-.|  ..=+.++-+|++.+
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~  130 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTN  130 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSC
T ss_pred             cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhC
Confidence            34455555555555554444433  222344444555555555555555555443333221112  12223444455544


Q ss_pred             ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      ++.+-.+++.       .|+..-...+.+-+...|.++.|.-+|..+..     |.-|...+.+.|++..|.+.-++   
T Consensus       131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK---  195 (624)
T 3lvg_A          131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK---  195 (624)
T ss_dssp             SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT---
T ss_pred             cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh---
Confidence            4433222211       23333333444444444444444444443321     33344444555555555443222   


Q ss_pred             cCCCCCHHHHHHHHHHHHccCCHHHHHHHH-HhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHH
Q 047067          290 NGIAPNQVTFLCVLTACSHAGLLDEGQGYF-ALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PI-EPTAAVW  366 (566)
Q Consensus       290 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~  366 (566)
                         .-+..||--+-.+|...+.+..|...- ..+....      ....++..|-+.|.++|-..+++.. +. +....++
T Consensus       196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad------eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmF  266 (624)
T 3lvg_A          196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD------ELEELINYYQDRGYFEELITMLEAALGLERAHMGMF  266 (624)
T ss_dssp             ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS------CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHH
T ss_pred             ---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH------HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHH
Confidence               235678999999999998887765544 3322211      2234777899999999999999876 43 3577888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          367 GALLGACRMHKNVELGAYAAERIFE-LDPHDSGPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       367 ~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      +-|.-.|++.. ++.-.+.++.... ++      ---++.+|.+.-.|.|+.-++..-
T Consensus       267 TELaILYsKY~-PeKlmEHlklf~sriN------ipKviracE~ahLW~ElvfLY~~y  317 (624)
T 3lvg_A          267 TELAILYSKFK-PQKMREHLELFWSRVN------IPKVLRAAEQAHLWAELVFLYDKY  317 (624)
T ss_dssp             HHHHHHHHSSC-TTHHHHHHTTSSSSSC------CTTTHHHHTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-HHHHHHHHHHHHHhcc------HHHHHHHHHHHhhHHHHHHHHhcc
Confidence            88888888774 3333333322111 11      123678899999999988777643

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.76  E-value=20  Score=33.27  Aligned_cols=136  Identities=11%  Similarity=0.099  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHH----HHHHHHHCCCCCChhHHHHHHHH
Q 047067           27 IAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAII----LFSQMLRLGLKPNQFTLSSVLKA  102 (566)
Q Consensus        27 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~----l~~~m~~~g~~p~~~t~~~ll~a  102 (566)
                      ...|.++..-|.+.+++++|.+++..-           ...+.+.|+...|-+    +.+...+.++++|......++..
T Consensus        33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l  101 (312)
T 2wpv_A           33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL  101 (312)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            346777788888888998888876432           334556677665554    35555667888888887777777


Q ss_pred             HccCCCch----HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhC
Q 047067          103 SGAGATDD----KFGRQVHAFCLKYGY--DWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARK  173 (566)
Q Consensus       103 ~~~~~~~~----~~~~~i~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~  173 (566)
                      +......+    ........+..+.|-  .-|+.....+...|.+.|++.+|+..|-.-...|...+..|+.-+.+.
T Consensus       102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~  178 (312)
T 2wpv_A          102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ  178 (312)
T ss_dssp             HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence            65533222    133444444444432  247788889999999999999999887633322455555555444433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.45  E-value=19  Score=40.56  Aligned_cols=164  Identities=13%  Similarity=0.072  Sum_probs=94.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 047067          133 SSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLE  212 (566)
Q Consensus       133 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~  212 (566)
                      ..++..+.+.+..+.|.++..-.+. +...--.+..+|...|++++|.+.|.+.- .|+..+....          ....
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~~  883 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVLR  883 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhhc
Confidence            3456666777888877776665544 44444566778889999999999997752 2222211100          0000


Q ss_pred             HHHHHHHHHHHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCh----hHHHHHHHHHHHcCCHHHHHH
Q 047067          213 QGKWVHAHVIKSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRL----LKRDV----VSWNSMLTGCAQHGLGKATVR  282 (566)
Q Consensus       213 ~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~g~~~~A~~  282 (566)
                      .    ...+....  ...-..-|..++..+-+.|.++.+.++-...    ...+.    ..|..+..++...|++++|..
T Consensus       884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~  959 (1139)
T 4fhn_B          884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV  959 (1139)
T ss_dssp             H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred             c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence            0    01111110  0112234555666666777766665554332    22221    258888999999999999988


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047067          283 WFEKMLRNGIAPNQVTFLCVLTACSHAGLLDE  314 (566)
Q Consensus       283 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  314 (566)
                      .+-.+.....+  ...+..|+...+..|..+.
T Consensus       960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred             HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence            88887764333  4455666666665555443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=85.26  E-value=9.5  Score=28.22  Aligned_cols=83  Identities=11%  Similarity=0.061  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047067          112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGF  191 (566)
Q Consensus       112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  191 (566)
                      ++..|-+.+...+-  ...+--.-+..+...|++++|..+.+...-||...|-++-.  .+.|..+++..-+.++...| 
T Consensus        24 EA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-   98 (115)
T 2uwj_G           24 EALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-   98 (115)
T ss_dssp             HHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-
T ss_pred             HHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-
Confidence            55556666555543  33344444556788899999999999999999999988765  47788888888887887766 


Q ss_pred             CCCHHHHH
Q 047067          192 EPTHFSYS  199 (566)
Q Consensus       192 ~pd~~t~~  199 (566)
                      .|....|.
T Consensus        99 ~p~~q~Fa  106 (115)
T 2uwj_G           99 DPALADFA  106 (115)
T ss_dssp             SHHHHHHH
T ss_pred             CHHHHHHH
Confidence            45444443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=84.82  E-value=10  Score=28.14  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047067          112 FGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGF  191 (566)
Q Consensus       112 ~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  191 (566)
                      ++..|-+.+...+-  ...+--.-+..+...|++++|..+.+...-||...|-++-.  .+.|..+++..-+.++...| 
T Consensus        25 EA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-   99 (116)
T 2p58_C           25 EANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-   99 (116)
T ss_dssp             HHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-
Confidence            55566666555543  33444444556788899999999999999999999988876  46677788887777777666 


Q ss_pred             CCCHHHH
Q 047067          192 EPTHFSY  198 (566)
Q Consensus       192 ~pd~~t~  198 (566)
                      .|....|
T Consensus       100 ~p~~q~F  106 (116)
T 2p58_C          100 DPRIQTF  106 (116)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            4444444

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.70  E-value=10  Score=28.07  Aligned_cols=86  Identities=15%  Similarity=0.146  Sum_probs=59.8

Q ss_pred             ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      ..++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+.+..||...|-+|-.  .+.|..+++...+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45666666666666553  33333333445677899999999999999999999987765  478888888888878877


Q ss_pred             cCCCCCHHHHH
Q 047067          290 NGIAPNQVTFL  300 (566)
Q Consensus       290 ~g~~p~~~t~~  300 (566)
                      +| .|....|.
T Consensus        97 sg-~p~~q~Fa  106 (115)
T 2uwj_G           97 SS-DPALADFA  106 (115)
T ss_dssp             CS-SHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            75 44444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=84.55  E-value=7.5  Score=32.07  Aligned_cols=112  Identities=10%  Similarity=0.000  Sum_probs=57.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcC-----CCCh-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH-HHHH
Q 047067          236 LVDMYAKSGSIEDAEKVFNRLL-----KRDV-------VSWNSMLTGCAQHGLGKATVRWFEKMLRNG-IAPNQV-TFLC  301 (566)
Q Consensus       236 li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~  301 (566)
                      -+..+...|.++.|+-+.+.+.     ++++       .+...+..++...|++..|...|++.++.. .-|... +...
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            3556666777777777666541     2232       244556667777777777777777754421 111111 1111


Q ss_pred             HHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 047067          302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIE  360 (566)
Q Consensus       302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  360 (566)
                      +..   .....          ......++.+.---+...|.+.|++++|+.+++.+|.+
T Consensus       106 ~~~---~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          106 TGN---SASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             ccc---cCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            100   00000          00112334444445677778888888888888887533

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.14  E-value=49  Score=37.15  Aligned_cols=31  Identities=10%  Similarity=-0.063  Sum_probs=24.3

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047067          126 DWNVYVGSSLLDMYARFDQMDDAWFLFTALE  156 (566)
Q Consensus       126 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~  156 (566)
                      +.++...-.+..+|..+|++++|.+.|.+..
T Consensus       839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa  869 (1139)
T 4fhn_B          839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS  869 (1139)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            3445555567778999999999999998865

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=84.08  E-value=11  Score=27.95  Aligned_cols=86  Identities=20%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      ..++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+.+..||...|-+|-.  .+.|..+++...+.++..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45666666666666553  33332333445677899999999999999999999987765  467888888887777777


Q ss_pred             cCCCCCHHHHH
Q 047067          290 NGIAPNQVTFL  300 (566)
Q Consensus       290 ~g~~p~~~t~~  300 (566)
                      +| .|....|.
T Consensus        98 sg-~p~~q~Fa  107 (116)
T 2p58_C           98 SQ-DPRIQTFV  107 (116)
T ss_dssp             CC-CHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            65 34444443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=83.25  E-value=30  Score=32.36  Aligned_cols=163  Identities=13%  Similarity=0.027  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 047067          131 VGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTF----SEMLREGFEPTHFSYSSVFTALA  206 (566)
Q Consensus       131 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~~~~  206 (566)
                      .+.++..-|.+.+++++|.+++..           -...+.+.|+...|-++-    +-..+.++++|..+...++..+.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            456677779999999999987644           233456677776655443    55566788899888888888877


Q ss_pred             ccCChH-HHHHHHHHH----HHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH
Q 047067          207 STGSLE-QGKWVHAHV----IKSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKA  279 (566)
Q Consensus       207 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  279 (566)
                      ....-+ .=..+...+    .+.|  ..-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+... 
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-  184 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-  184 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence            665422 112233333    3333  34466777888899999999999999884322222356655554444433211 


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067          280 TVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF  319 (566)
Q Consensus       280 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  319 (566)
                                   .++...-..++. |...+++..|...+
T Consensus       185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~  210 (336)
T 3lpz_A          185 -------------TAPLYCARAVLP-YLLVANVRAANTAY  210 (336)
T ss_dssp             -------------GHHHHHHHHHHH-HHHTTCHHHHHHHH
T ss_pred             -------------cHHHHHHHHHHH-HHHhCCHHHHHHHH
Confidence                         122233333333 44457777777755

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=83.17  E-value=29  Score=32.14  Aligned_cols=133  Identities=13%  Similarity=0.059  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 047067          130 YVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRT----FSEMLREGFEPTHFSYSSVFTAL  205 (566)
Q Consensus       130 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~~~  205 (566)
                      ..+.++..-|.+.+++++|.+++..           -...+.+.|+...|-++    .+...+.++++|..+...++..+
T Consensus        34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~  102 (312)
T 2wpv_A           34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI  102 (312)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            3566777789999999999887644           23345667777665554    55566678889988888888777


Q ss_pred             hccCChH-HHHHHHHHHH----HhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 047067          206 ASTGSLE-QGKWVHAHVI----KSG--GQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQ  273 (566)
Q Consensus       206 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  273 (566)
                      .....-+ .-..+...++    +.|  ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+..
T Consensus       103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~  177 (312)
T 2wpv_A          103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC  177 (312)
T ss_dssp             TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            6643221 1233333443    332  234667788888999999999999888763222245555555444433

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=82.48  E-value=8.7  Score=28.61  Aligned_cols=63  Identities=11%  Similarity=0.197  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067          276 LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD  339 (566)
Q Consensus       276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  339 (566)
                      +.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++..- .+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            445667777777778889999999999999999999999999996655432 333456776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=81.79  E-value=8.4  Score=40.69  Aligned_cols=52  Identities=17%  Similarity=-0.021  Sum_probs=27.3

Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 047067          205 LASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLL  257 (566)
Q Consensus       205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  257 (566)
                      |...|+++.|..+-++.+... +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            334455555555555555443 3444555555555555555555555555554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=81.37  E-value=7.7  Score=32.01  Aligned_cols=26  Identities=19%  Similarity=0.092  Sum_probs=22.1

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHH
Q 047067          398 GPHILLANIYASAGRLNDAARARKMM  423 (566)
Q Consensus       398 ~~~~~l~~~~~~~g~~~~a~~~~~~m  423 (566)
                      ..-..++.+|.+.|++++|..+++.+
T Consensus       123 Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          123 EVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            45567999999999999999998865

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.47  E-value=46  Score=32.68  Aligned_cols=184  Identities=11%  Similarity=0.055  Sum_probs=118.2

Q ss_pred             CCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH----HHHhc
Q 047067          173 KSEGEKALRTFSEMLRE-----GFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD----MYAKS  243 (566)
Q Consensus       173 ~g~~~~A~~~~~~m~~~-----g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~  243 (566)
                      .|++++|++.+..+.+.     +..........++..|...++++.....+..+.+..-... .....++.    .....
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcC
Confidence            37889999888776542     3455667788899999999999998877766654322221 11233333    22223


Q ss_pred             CC--HHHHHHHHHhcCC---C-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 047067          244 GS--IEDAEKVFNRLLK---R-------DVVSWNSMLTGCAQHGLGKATVRWFEKMLRN--GIAPN---QVTFLCVLTAC  306 (566)
Q Consensus       244 g~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~  306 (566)
                      ..  .+.-..+.+....   .       .......|...|...|++.+|..++.++...  |..+.   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            32  2223334433321   1       1123456778899999999999999998753  22222   23566677889


Q ss_pred             HccCCHHHHHHHHHhHHh----hCCCcc--HHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          307 SHAGLLDEGQGYFALMKK----HGVEPE--EAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       307 ~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      ...+++..|..++..+..    ....|+  ...|.+++..+...+++.+|...|.+.
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999988855431    222232  346678888888999999998887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	566
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 37/391 (9%), Positives = 107/391 (27%), Gaps = 24/391 (6%)

Query: 35  NAYAKCGCLDEARKLFDEM----PVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLK 90
           +   + G  + A +   ++    P  +      L S + Q  + + +    +  ++    
Sbjct: 7   HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--N 63

Query: 91  PNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWF 150
           P      S L   G    +    ++              ++   +    A     D    
Sbjct: 64  PLLAEAYSNL---GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 151 LFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAST-- 208
           +   + +         +                ++        T  +++  ++ L     
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 209 --GSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNS 266
             G +          +      +    N L ++  ++   + A   + R L         
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYIN-LGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

Query: 267 MLT-GCAQHGLGKAT--VRWFEKMLRNGIAPNQVTFLCVL-TACSHAGLLDEGQGYFALM 322
                C  +  G     +  + + +   + P+     C L  A    G + E +  +   
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297

Query: 323 KKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIRE-MPIEPT-AAVWGALLGACRMHKNVE 380
            +      ++      ++    G ++ A++  R+ + + P  AA    L    +    ++
Sbjct: 298 LRLCPTHADSLN-NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356

Query: 381 LGAYAAERIFELDPHDSGPHILLANIYASAG 411
                 +    + P  +  +  + N      
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	566
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.21
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.11
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.09
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.08
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.07
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.06
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.01
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.0
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.92
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.62
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.58
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.48
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.47
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.47
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.44
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.41
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.35
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.27
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.22
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.19
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.16
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.11
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.07
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.04
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.99
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.98
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.9
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.86
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.74
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.63
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.62
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.57
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.54
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.53
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.14
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.12
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.66
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.75
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.37
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.24
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.06
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.69
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.05
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	89.2
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.98
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	82.48

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-20  Score=185.47  Aligned_cols=365  Identities=11%  Similarity=0.089  Sum_probs=249.8

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHccCC---CCCcchHHHHHHHHHhCCCccHHHHHH
Q 047067            5 LKKLKEARIVHAHILGSAFKNDIAMQNTILNAYAKCGCLDEARKLFDEMP---VKDMVTWTALISGYSQNDQPENAIILF   81 (566)
Q Consensus         5 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~   81 (566)
                      .|++++|.+++..+++.. +.++.++..+...|.+.|++++|...|++..   +.+..+|..+...|.+.|++++|+..+
T Consensus        12 ~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~   90 (388)
T d1w3ba_          12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY   90 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccc
Confidence            466666666666666653 3345566666666666666666666666543   234456666666666666666666666


Q ss_pred             HHHHHCCCCCChhHHHHHHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh---CCCC
Q 047067           82 SQMLRLGLKPNQFTLSSVLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTA---LESK  158 (566)
Q Consensus        82 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~  158 (566)
                      ....+... .+.........                                    .+...+....+......   ....
T Consensus        91 ~~~~~~~~-~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  133 (388)
T d1w3ba_          91 RHALRLKP-DFIDGYINLAA------------------------------------ALVAAGDMEGAVQAYVSALQYNPD  133 (388)
T ss_dssp             HHHHHHCT-TCHHHHHHHHH------------------------------------HHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred             cccccccc-ccccccccccc------------------------------------cccccccccccccccccccccccc
Confidence            66655321 11111111111                                    11112222222211111   1122


Q ss_pred             ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 047067          159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVD  238 (566)
Q Consensus       159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  238 (566)
                      ....+..........+....+...+.+..... +-+...+..+...+...++++.|...+..+++.. +.+...+..+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~  211 (388)
T d1w3ba_         134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN  211 (388)
T ss_dssp             CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhh
Confidence            33344445555556666666666666655532 2234556666666777777777777777777664 445666777788


Q ss_pred             HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH
Q 047067          239 MYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDE  314 (566)
Q Consensus       239 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~  314 (566)
                      .|...|++++|...|++..   ..+...|..+...+.+.|++++|+..|++..+.  .| +..++..+..++...|++++
T Consensus       212 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~  289 (388)
T d1w3ba_         212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAE  289 (388)
T ss_dssp             HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHH
T ss_pred             hhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888887763   346677888888888999999999999998874  44 46778888889999999999


Q ss_pred             HHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047067          315 GQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFEL  392 (566)
Q Consensus       315 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  392 (566)
                      |...+....... +.+...+..+...+.+.|++++|.+.|++. .+.|+ ..+|..+..++...|++++|+..+++++++
T Consensus       290 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         290 AEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999996655543 556778888999999999999999999986 66674 578889999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHhcCC
Q 047067          393 DPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       393 ~p~~~~~~~~l~~~~~~~g~  412 (566)
                      +|+++.++..|+.+|.+.|+
T Consensus       369 ~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         369 SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999988875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-19  Score=176.20  Aligned_cols=322  Identities=15%  Similarity=0.088  Sum_probs=253.1

Q ss_pred             HHHHHccCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCC
Q 047067           99 VLKASGAGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSE  175 (566)
Q Consensus        99 ll~a~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~  175 (566)
                      +...+...|+.+ .+...+..+++.. +.+..++..+...|.+.|++++|...+....+   .+...+..........+.
T Consensus        39 la~~~~~~~~~~-~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (388)
T d1w3ba_          39 LSSIHFQCRRLD-RSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD  116 (388)
T ss_dssp             HHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccc
Confidence            333333444444 4444444444332 23455677788889999999999999988654   345556666666667777


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067          176 GEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNR  255 (566)
Q Consensus       176 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  255 (566)
                      ...+........... ..+..............+....+...+....... +.+...+..+...+...|++++|...+++
T Consensus       117 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  194 (388)
T d1w3ba_         117 MEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK  194 (388)
T ss_dssp             SSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             ccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHH
Confidence            777777776665543 3344455556666777888888888888877765 55667788889999999999999999987


Q ss_pred             cC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHH
Q 047067          256 LL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEA  332 (566)
Q Consensus       256 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~  332 (566)
                      ..   ..+..+|..+...+...|++++|+..+++..... +.+...+..+...+.+.|++++|...|+...+.. +.+..
T Consensus       195 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~  272 (388)
T d1w3ba_         195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD  272 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred             HHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            63   3467889999999999999999999999998864 3467778888999999999999999997766543 33567


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 047067          333 HYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASA  410 (566)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  410 (566)
                      .+..+...|...|++++|.+.++..  ....+...+..+...+...|++++|+..+++++++.|+++.++..++.+|.+.
T Consensus       273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  352 (388)
T d1w3ba_         273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            8889999999999999999999887  22346788899999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhC
Q 047067          411 GRLNDAARARKMMKES  426 (566)
Q Consensus       411 g~~~~a~~~~~~m~~~  426 (566)
                      |++++|...+++..+.
T Consensus       353 g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         353 GKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TCCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998763

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-13  Score=131.38  Aligned_cols=239  Identities=12%  Similarity=0.036  Sum_probs=160.9

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 047067          165 ALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSG  244 (566)
Q Consensus       165 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  244 (566)
                      .....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|+++.|...+.++++.. +.+...+..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            34556777788888888887777643 2245566666677777777777777777776654 334555666666666666


Q ss_pred             CHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Q 047067          245 SIEDAEKVFNRLLKRDV---VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFAL  321 (566)
Q Consensus       245 ~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  321 (566)
                      ++++|.+.++.....+.   ..+........                    ..+.......+..+...+...++...+..
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            66666666665421111   00000000000                    00000011111223334556677777744


Q ss_pred             HHhhC-CCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047067          322 MKKHG-VEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG  398 (566)
Q Consensus       322 ~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  398 (566)
                      ..... -.++...+..+...+...|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            44432 2345667888889999999999999999887 3345 5678999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          399 PHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       399 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ++..++.+|.+.|++++|...|++..+
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999877

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.5e-13  Score=129.52  Aligned_cols=265  Identities=11%  Similarity=0.024  Sum_probs=191.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047067          134 SLLDMYARFDQMDDAWFLFTALES---KNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGS  210 (566)
Q Consensus       134 ~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~  210 (566)
                      -....|.+.|++++|...|+++.+   .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence            456678999999999999999764   367799999999999999999999999998753 2356778888899999999


Q ss_pred             hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047067          211 LEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRN  290 (566)
Q Consensus       211 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  290 (566)
                      +++|...+..+....... ...........                ...+.......+..+...+...+|...|.+..+.
T Consensus       103 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAY-AHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccch-HHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999999988764221 11100000000                0001111111222334456677888888887764


Q ss_pred             C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047067          291 G-IAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWG  367 (566)
Q Consensus       291 g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  367 (566)
                      . -.++...+..+...+...|++++|...++...... +-+...|..+...|.+.|++++|.+.|++. .+.| +..+|.
T Consensus       166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  244 (323)
T d1fcha_         166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY  244 (323)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence            3 23356778888888899999999999996666554 335678888999999999999999999887 4455 567899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----------HHHHHHHHHhcCChhHHH
Q 047067          368 ALLGACRMHKNVELGAYAAERIFELDPHDSGP-----------HILLANIYASAGRLNDAA  417 (566)
Q Consensus       368 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~  417 (566)
                      .+..+|...|++++|+..+++++++.|++...           +..+..++...|+.+.+.
T Consensus       245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999998887653           344555666666665443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=5.7e-09  Score=99.49  Aligned_cols=259  Identities=12%  Similarity=0.003  Sum_probs=171.3

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCcHhHHHHHH
Q 047067          167 IAGHARKSEGEKALRTFSEMLREGFEPT----HFSYSSVFTALASTGSLEQGKWVHAHVIKSGG-----QLVAFVGNTLV  237 (566)
Q Consensus       167 i~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li  237 (566)
                      ...+...|++++|++++++........+    ...+..+..++...|++++|...+.++++...     ......+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            3445566677777777766655321111    12344455566666777777777666654311     11123345556


Q ss_pred             HHHHhcCCHHHHHHHHHhcC-------CC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHH
Q 047067          238 DMYAKSGSIEDAEKVFNRLL-------KR----DVVSWNSMLTGCAQHGLGKATVRWFEKMLRNG----IAPNQVTFLCV  302 (566)
Q Consensus       238 ~~~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~l  302 (566)
                      ..|...|++..|...+....       .+    ....+..+...+...|+++.+...+.+.....    ......++...
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            67777788887777776541       11    12345566777888899999998888877642    22234555666


Q ss_pred             HHHHHccCCHHHHHHHHHhHHhh----CCCc--cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHH
Q 047067          303 LTACSHAGLLDEGQGYFALMKKH----GVEP--EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-----TAAVWGALL  370 (566)
Q Consensus       303 l~a~~~~g~~~~a~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll  370 (566)
                      ...+...+....+...+......    +..+  ....+..+...+...|++++|...+++. ...|     ....+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            66777788888888777333221    1111  1234566677888999999999999887 2222     235667788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          371 GACRMHKNVELGAYAAERIFEL------DPHDSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       371 ~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      .++...|++++|...+++++..      .|....++..++.+|...|++++|.+.+++..+
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8899999999999999998743      355566888999999999999999999998765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.8e-08  Score=94.44  Aligned_cols=186  Identities=11%  Similarity=0.083  Sum_probs=129.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-hhHHHHHHHHHHHcCCHHHHHHHHH
Q 047067          210 SLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--R-D-VVSWNSMLTGCAQHGLGKATVRWFE  285 (566)
Q Consensus       210 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~  285 (566)
                      ..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+  + + ...|...+....+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3466777888777665566667777778888888888888888887632  1 2 3467888888888888888888888


Q ss_pred             HHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC----CCC
Q 047067          286 KMLRNGIAPNQVTFLCVLTA-CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM----PIE  360 (566)
Q Consensus       286 ~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~  360 (566)
                      ++++.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++.    +..
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            88775322 33333333222 33457788888888555543 2445667778888888888888888888875    334


Q ss_pred             CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047067          361 PT--AAVWGALLGACRMHKNVELGAYAAERIFELDPHDS  397 (566)
Q Consensus       361 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  397 (566)
                      |+  ...|...+.--..+|+.+.+..+++++.+..|...
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            42  45777777777788888888888888887777654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2e-09  Score=98.13  Aligned_cols=221  Identities=10%  Similarity=-0.037  Sum_probs=133.0

Q ss_pred             hhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 047067          176 GEKALRTFSEMLREGF-EP--THFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKV  252 (566)
Q Consensus       176 ~~~A~~~~~~m~~~g~-~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  252 (566)
                      .+.++.-+++...... .+  ...+|..+..++.+.|++++|...|.+.++.. +.+..+++.+..+|.+.|++++|++.
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            3445555555554321 11  12345555667777777777777777777765 45667777888888888888888888


Q ss_pred             HHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCc
Q 047067          253 FNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEP  329 (566)
Q Consensus       253 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p  329 (566)
                      |+++.   +.+..+|..+...|...|++++|+..|++..+.. +.+......+..++.+.+..+....+........  +
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  170 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--K  170 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--C
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--h
Confidence            88773   3356678888888888888888888888887753 2233333334444444554444444443333322  2


Q ss_pred             cHHHHHHHHHHhhhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047067          330 EEAHYVTFVDLLGRAGL----LDRALKFIREM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHI  401 (566)
Q Consensus       330 ~~~~~~~li~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  401 (566)
                      ....++ ++..+.....    .+.+...+... ...|+ ..+|..+...+...|++++|...+++++..+|++...|.
T Consensus       171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            222222 2222222222    22222222111 11232 246777888899999999999999999999998865554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2.9e-08  Score=94.43  Aligned_cols=286  Identities=8%  Similarity=-0.056  Sum_probs=193.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCC--C--C----hHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHH
Q 047067          134 SLLDMYARFDQMDDAWFLFTALES--K--N----EVSWNALIAGHARKSEGEKALRTFSEMLREGF-EPT----HFSYSS  200 (566)
Q Consensus       134 ~li~~y~~~g~~~~A~~~f~~~~~--~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~  200 (566)
                      .....+...|++++|.++|++..+  |  +    ..+++.+...|...|++++|+..|++...... .++    ..++..
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            345567788888888888876432  2  1    34677778888889999999998888765311 111    234555


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHh----CCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHH
Q 047067          201 VFTALASTGSLEQGKWVHAHVIKS----GGQL---VAFVGNTLVDMYAKSGSIEDAEKVFNRLLK--------RDVVSWN  265 (566)
Q Consensus       201 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~  265 (566)
                      +...+...|++..+...+......    +...   ....+..+...|...|+++.+...+.....        ....++.
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            666777888888888888776542    1111   123455677888899999999988877621        1234556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC--CC--CC--HHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC---ccHHHHHH
Q 047067          266 SMLTGCAQHGLGKATVRWFEKMLRNG--IA--PN--QVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE---PEEAHYVT  336 (566)
Q Consensus       266 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~--p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~  336 (566)
                      .+...+...++..++...+.+.....  ..  +.  ...+..+...+...|++++|...+.........   .....+..
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  256 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  256 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            66777888899999988888765421  11  11  234555666778899999999998554433222   22345667


Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--C-------ch
Q 047067          337 FVDLLGRAGLLDRALKFIREM-------PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPHD--S-------GP  399 (566)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~-------~~  399 (566)
                      +...|...|++++|...+++.       +..|+. .++..+...+...|++++|.+.+++++++.+..  .       ..
T Consensus       257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~  336 (366)
T d1hz4a_         257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA  336 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence            888999999999999988865       334433 577788888999999999999999998864321  1       12


Q ss_pred             HHHHHHHHHhcCChhHHHHH
Q 047067          400 HILLANIYASAGRLNDAARA  419 (566)
Q Consensus       400 ~~~l~~~~~~~g~~~~a~~~  419 (566)
                      ...+...+...++.+++.+-
T Consensus       337 ~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         337 MAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHhcCCChHHHHH
Confidence            33344555666777766543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.9e-09  Score=96.74  Aligned_cols=224  Identities=13%  Similarity=0.179  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLREGFEPTH-FSYSSVFTALASTG-SLEQGKWVHAHVIKSGGQLVAFVGNTLVDM  239 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  239 (566)
                      +|+.+...+.+.+.+++|+++++++.+.  .|+. ..|.....++...+ ++++|...++.+++..              
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--------------  108 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--------------  108 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--------------
Confidence            4555555566666666666666666553  2332 23333333333333 2444444444444443              


Q ss_pred             HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047067          240 YAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYF  319 (566)
Q Consensus       240 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  319 (566)
                                        ..+..+|+.+...+.+.|++++|++.++++++.. +-+...|..+...+.+.|++++|...+
T Consensus       109 ------------------p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~  169 (315)
T d2h6fa1         109 ------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYV  169 (315)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             ------------------HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHH
Confidence                              2344555555555555555555555555555531 113455555555555555555555555


Q ss_pred             HhHHhhCCCccHHHHHHHHHHhhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047067          320 ALMKKHGVEPEEAHYVTFVDLLGRAGL------LDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFE  391 (566)
Q Consensus       320 ~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  391 (566)
                      ..+.+.. +.+...|+.+...+.+.+.      +++|.+.+.+. ...| +...|+.+...+.. ...+++...++++++
T Consensus       170 ~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         170 DQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred             HHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence            4444432 1233444444444443333      56677776665 3445 56778777666544 446788888888888


Q ss_pred             cCCCCCc--hHHHHHHHHHhc--CChhHHHHHHHH
Q 047067          392 LDPHDSG--PHILLANIYASA--GRLNDAARARKM  422 (566)
Q Consensus       392 ~~p~~~~--~~~~l~~~~~~~--g~~~~a~~~~~~  422 (566)
                      +.|+...  .+..++.+|...  +..+.+...+++
T Consensus       248 l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k  282 (315)
T d2h6fa1         248 LQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK  282 (315)
T ss_dssp             HTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             hCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            8876543  445566766543  343444444433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.2e-09  Score=99.85  Aligned_cols=193  Identities=11%  Similarity=0.104  Sum_probs=159.1

Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 047067          230 AFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHG-LGKATVRWFEKMLRNGIAP-NQVTFLCVLT  304 (566)
Q Consensus       230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~  304 (566)
                      ...++.+...+.+.+..++|+++++++.   ..+..+|+....++...| ++++|+..+++.++.  .| +..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhH
Confidence            3455666777888889999999998874   346778999999988877 589999999999885  34 5788999999


Q ss_pred             HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----
Q 047067          305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKN----  378 (566)
Q Consensus       305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----  378 (566)
                      .+...|++++|...+..+.+.. +.+...|..+...+.+.|++++|.+.++++ .+.| +...|+.+...+...+.    
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence            9999999999999997777654 446788999999999999999999999988 5556 67789887777666554    


Q ss_pred             --HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          379 --VELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       379 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                        +++|+..+.++++++|++..++..++.++...| .+++.+.++...+.
T Consensus       200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL  248 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence              678999999999999999999999998877655 57788888877663

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=3.6e-10  Score=107.80  Aligned_cols=267  Identities=9%  Similarity=-0.070  Sum_probs=184.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCC--C-ChHHHHHHHHH----------HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047067          135 LLDMYARFDQMDDAWFLFTALES--K-NEVSWNALIAG----------HARKSEGEKALRTFSEMLREGFEPTHFSYSSV  201 (566)
Q Consensus       135 li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l  201 (566)
                      ++....+.+..++|.+++++..+  | +...|+..-..          +...|++++|+.+++...+.. +-+...+...
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~  113 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR  113 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHh
Confidence            33333333444677777776653  3 33445443322          233445788999999888753 2345556666


Q ss_pred             HHHHhccC--ChHHHHHHHHHHHHhCCCCcHhH-HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcC
Q 047067          202 FTALASTG--SLEQGKWVHAHVIKSGGQLVAFV-GNTLVDMYAKSGSIEDAEKVFNRLLKR---DVVSWNSMLTGCAQHG  275 (566)
Q Consensus       202 l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g  275 (566)
                      ..++...+  +++++...+..+++.... +... +..+...+...|..++|+..++.+...   +..+|+.+...+.+.|
T Consensus       114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         114 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            66665554  578999999999887633 3444 345557788899999999999988643   6788999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHH
Q 047067          276 LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIR  355 (566)
Q Consensus       276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  355 (566)
                      ++++|...+++..+.  .|+..   .+...+...+..+++...+....... +++...+..+...+...|+.++|...+.
T Consensus       193 ~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~  266 (334)
T d1dcea1         193 PQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQ  266 (334)
T ss_dssp             CCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            998887766655442  23322   22233445566667777774444333 3344456667778888899999999998


Q ss_pred             hC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067          356 EM-PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS  409 (566)
Q Consensus       356 ~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  409 (566)
                      +. ...|+ ..+|..+..++...|+.++|...++++++++|.+...|..|...+.-
T Consensus       267 ~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence            77 55664 46888888999999999999999999999999988888878776653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=5.1e-08  Score=91.24  Aligned_cols=182  Identities=10%  Similarity=0.029  Sum_probs=143.6

Q ss_pred             cCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047067          243 SGSIEDAEKVFNRLL----KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGY  318 (566)
Q Consensus       243 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  318 (566)
                      .+..++|..+|++..    ..+...|...+..+...|+.++|..+|+++++.........|...+..+.+.|+++.|.++
T Consensus        77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            345678888888753    3466789999999999999999999999999853333355788999999999999999999


Q ss_pred             HHhHHhhCCCccHHHHHHHHHH-hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067          319 FALMKKHGVEPEEAHYVTFVDL-LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       319 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      |....+.. +.+...|...... +...|+.+.|..+|+.+ ...| +...|...+......|+.+.|..+|+++++..|.
T Consensus       157 ~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         157 FKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            97766544 2344445444443 34568999999999988 2233 5789999999999999999999999999998775


Q ss_pred             CCc----hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          396 DSG----PHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       396 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ++.    .|...+..-...|+.+.+..+.+++.+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            543    566777777888999999999998876

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=4.8e-09  Score=95.60  Aligned_cols=212  Identities=15%  Similarity=0.016  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHhCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 047067          212 EQGKWVHAHVIKSGGQL---VAFVGNTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFE  285 (566)
Q Consensus       212 ~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~  285 (566)
                      +.+..-+.+++......   ...++..+..+|.+.|++++|+..|++..   ..++.+|+.+..+|.+.|++++|+..|+
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~   95 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD   95 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence            44444455555432211   23466778899999999999999999873   4578899999999999999999999999


Q ss_pred             HHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH
Q 047067          286 KMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA  363 (566)
Q Consensus       286 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~  363 (566)
                      +.++.  .| +..++..+..++...|++++|...|....+.. +.+......+...+.+.+..+.+..+.... ...++.
T Consensus        96 ~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          96 SVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             HHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            99995  44 46688889999999999999999997766654 233444444445555666555555444433 112222


Q ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          364 AVWGALLGACRM----HKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       364 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      ..++. +..+..    .+..+.+...+.......|....++..++.+|...|++++|.+.+++..+..
T Consensus       173 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         173 WGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             THHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            22222 222221    1223344444444445566666788899999999999999999999998744

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=3.1e-09  Score=101.14  Aligned_cols=255  Identities=9%  Similarity=0.001  Sum_probs=183.4

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-H---HHHHHHhc-------cCChHHHHHHHHHHHHhCCCCcHh
Q 047067          163 WNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSY-S---SVFTALAS-------TGSLEQGKWVHAHVIKSGGQLVAF  231 (566)
Q Consensus       163 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~---~ll~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~  231 (566)
                      +..++......+..++|++++++..+.  .|+..+. +   .++.....       .+.++++...++.+++.. +.+..
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~  108 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG  108 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence            344444444445568999999999874  5776543 2   22233333       345778888898888876 55666


Q ss_pred             HHHHHHHHHHhcC--CHHHHHHHHHhcC---CCChhHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047067          232 VGNTLVDMYAKSG--SIEDAEKVFNRLL---KRDVVSWNSM-LTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA  305 (566)
Q Consensus       232 ~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  305 (566)
                      .+..+..++...+  ++++|...++++.   .++...|... ...+...+.+++|+..++++++... -+...|..+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~  187 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            7777777777665  4889999999873   3456666544 4677778999999999999988532 257788888888


Q ss_pred             HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047067          306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM--PIEPTAAVWGALLGACRMHKNVELGA  383 (566)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~  383 (566)
                      +...|++++|...+....+.  .|+.   ..+...+...+..+++...+...  ...++...+..+...+...++.++|.
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            99999888877666433322  1221   22334455667777777777665  21234455666777788889999999


Q ss_pred             HHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          384 YAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       384 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ..+.+.++.+|.+..++..++.+|...|++++|...+++..+.
T Consensus       263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999873

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=6.8e-08  Score=83.91  Aligned_cols=97  Identities=13%  Similarity=0.056  Sum_probs=61.6

Q ss_pred             ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067          329 PEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI  406 (566)
Q Consensus       329 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  406 (566)
                      |+...+......|.+.|++++|...|++. .+.| +...|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            44444555556666666666666666554 3333 455666666666666667777777777666666666666666777


Q ss_pred             HHhcCChhHHHHHHHHHHh
Q 047067          407 YASAGRLNDAARARKMMKE  425 (566)
Q Consensus       407 ~~~~g~~~~a~~~~~~m~~  425 (566)
                      |.+.|++++|...+++..+
T Consensus        82 ~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            7777777777666666654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.1e-06  Score=75.31  Aligned_cols=141  Identities=6%  Similarity=-0.102  Sum_probs=102.1

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047067          237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQ  316 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  316 (566)
                      ...+...|+++.|++.|.++.+++..+|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            4557788999999999999988899999999999999999999999999998853 224678888888999999999999


Q ss_pred             HHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047067          317 GYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREMPIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPH  395 (566)
Q Consensus       317 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  395 (566)
                      ..|+...... +++..     + .|...|           ...+++ ..++..+..++...|++++|.+.+++++++.|.
T Consensus        91 ~~~~kAl~~~-~~n~~-----~-~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          91 KDLKEALIQL-RGNQL-----I-DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHTT-TTCSE-----E-ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHhC-ccCch-----H-HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            9886554321 11100     0 000000           011112 245556677788888888888888888888876


Q ss_pred             C
Q 047067          396 D  396 (566)
Q Consensus       396 ~  396 (566)
                      .
T Consensus       153 ~  153 (192)
T d1hh8a_         153 P  153 (192)
T ss_dssp             G
T ss_pred             c
Confidence            5

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4.3e-07  Score=70.93  Aligned_cols=98  Identities=11%  Similarity=0.069  Sum_probs=45.1

Q ss_pred             HHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 047067          306 CSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGA  383 (566)
Q Consensus       306 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~  383 (566)
                      +...|++++|...|....+.. +.+...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|+
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~   91 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK   91 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHH
Confidence            344444444444443333322 223334444444444455555554444444 1122 3444555555555555555555


Q ss_pred             HHHHHHHhcCCCCCchHHHHH
Q 047067          384 YAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       384 ~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      ..++++++++|+++.++..+.
T Consensus        92 ~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          92 RTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHH
Confidence            555555555555544444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.3e-07  Score=72.57  Aligned_cols=90  Identities=14%  Similarity=0.094  Sum_probs=82.8

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChh
Q 047067          337 FVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLN  414 (566)
Q Consensus       337 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  414 (566)
                      -...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|+++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence            456788999999999999998 4455 67789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 047067          415 DAARARKMMKES  426 (566)
Q Consensus       415 ~a~~~~~~m~~~  426 (566)
                      +|...+++..+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999999874

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.50  E-value=2.2e-07  Score=71.98  Aligned_cols=89  Identities=19%  Similarity=0.095  Sum_probs=80.6

Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCh
Q 047067          336 TFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRL  413 (566)
Q Consensus       336 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  413 (566)
                      .+...+.+.|++++|...|++. ...| +..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            3566788899999999999987 4456 5789999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH
Q 047067          414 NDAARARKMMK  424 (566)
Q Consensus       414 ~~a~~~~~~m~  424 (566)
                      ++|.+.+++..
T Consensus       101 ~~A~~~l~~~l  111 (112)
T d1hxia_         101 NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.5e-06  Score=74.47  Aligned_cols=119  Identities=8%  Similarity=-0.034  Sum_probs=86.3

Q ss_pred             HHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047067          305 ACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELG  382 (566)
Q Consensus       305 a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a  382 (566)
                      .+...|+++.|.+.|..+    .+|+..+|..+...|...|++++|.+.|++. .+.| +...|..+..++...|++++|
T Consensus        14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence            345566677776666443    2455566666777777777777777777766 3344 556888888888888888888


Q ss_pred             HHHHHHHHhcCCCCC----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047067          383 AYAAERIFELDPHDS----------------GPHILLANIYASAGRLNDAARARKMMKESG  427 (566)
Q Consensus       383 ~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  427 (566)
                      +..++++++..|.+.                .++..++.+|.+.|++++|.+.++...+..
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            888888887655432                346688999999999999999999887644

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=4e-07  Score=78.82  Aligned_cols=115  Identities=8%  Similarity=-0.105  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047067          294 PNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLG  371 (566)
Q Consensus       294 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~  371 (566)
                      |+...+......+.+.|++++|+..|....... +.+...|..+..+|.+.|++++|...|++. .+.| +..+|..+..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            566667777777888888888888886555543 445677888888888999999999888877 6667 4678889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047067          372 ACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYAS  409 (566)
Q Consensus       372 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  409 (566)
                      ++...|++++|+..++++++++|++...+...+..+..
T Consensus        81 ~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~  118 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  118 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            99999999999999999999888766554444444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.3e-06  Score=72.36  Aligned_cols=117  Identities=9%  Similarity=0.012  Sum_probs=89.9

Q ss_pred             HHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047067          302 VLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNV  379 (566)
Q Consensus       302 ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~  379 (566)
                      ....|.+.|++++|...|....+.. +.+...|..+...|...|++++|.+.|+++ .+.| +..+|..+..++...|++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            3456667788888888886666654 345677888888888888998888888877 4455 557899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHH--hcCChhHHHHH
Q 047067          380 ELGAYAAERIFELDPHDSGPHILLANIYA--SAGRLNDAARA  419 (566)
Q Consensus       380 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~  419 (566)
                      ++|...++++++++|+++..+..+..+..  ..+.+++|...
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999888777765543  34445556544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=9.5e-07  Score=81.50  Aligned_cols=188  Identities=9%  Similarity=-0.014  Sum_probs=124.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C--CCHHHHHH
Q 047067          236 LVDMYAKSGSIEDAEKVFNRLLK-----RD----VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGI---A--PNQVTFLC  301 (566)
Q Consensus       236 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~--p~~~t~~~  301 (566)
                      ..++|...|++++|.+.|.+..+     .+    ..+|+.+...|.+.|++++|++.+++..+.-.   .  ....++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            45667788888888888876622     12    35788888888899999999988887655211   1  11345666


Q ss_pred             HHHHHH-ccCCHHHHHHHHHhHHhh----CCCc-cHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-------CH-HHH
Q 047067          302 VLTACS-HAGLLDEGQGYFALMKKH----GVEP-EEAHYVTFVDLLGRAGLLDRALKFIREM-PIEP-------TA-AVW  366 (566)
Q Consensus       302 ll~a~~-~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------~~-~~~  366 (566)
                      +...|. ..|++++|...+....+.    +.++ ...++..+...|.+.|++++|.+.|+++ ...|       .. ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            666664 469999999998544321    2112 1346778889999999999999999886 1111       11 233


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHh--cCChhHHHHHHHHH
Q 047067          367 GALLGACRMHKNVELGAYAAERIFELDPHDSG-----PHILLANIYAS--AGRLNDAARARKMM  423 (566)
Q Consensus       367 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m  423 (566)
                      ...+..+...|+++.|...+++..+++|..+.     ....++.+|..  .+++++|...|+.+
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            44555677889999999999999999886443     23446666654  35678888777643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=3.4e-06  Score=77.63  Aligned_cols=207  Identities=11%  Similarity=0.012  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHH
Q 047067          162 SWNALIAGHARKSEGEKALRTFSEMLRE----GFEPT-HFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTL  236 (566)
Q Consensus       162 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  236 (566)
                      .|......|...|++++|++.|.+....    +-+++ ..+|..+..++.+.|++++|...+....+.            
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~------------  106 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI------------  106 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH------------
Confidence            4777777777777777777777776542    11111 134555555555555555555555443321            


Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH-cCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccC
Q 047067          237 VDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQ-HGLGKATVRWFEKMLRN----GIAPN-QVTFLCVLTACSHAG  310 (566)
Q Consensus       237 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g  310 (566)
                         +...|+...+           ..++..+...|.. .|++++|++.|++..+.    +..+. ..++..+...+...|
T Consensus       107 ---~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g  172 (290)
T d1qqea_         107 ---FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG  172 (290)
T ss_dssp             ---HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ---hhhcccchhH-----------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC
Confidence               1111111111           2234444445533 46677777766665431    11111 234566666777777


Q ss_pred             CHHHHHHHHHhHHhhCCCcc------HHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhc-
Q 047067          311 LLDEGQGYFALMKKHGVEPE------EAHYVTFVDLLGRAGLLDRALKFIREM-PIEPT------AAVWGALLGACRMH-  376 (566)
Q Consensus       311 ~~~~a~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~~-  376 (566)
                      ++++|...|+..........      ...+...+..+...|+++.|...+++. .+.|.      ......++.++... 
T Consensus       173 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d  252 (290)
T d1qqea_         173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD  252 (290)
T ss_dssp             CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcC
Confidence            77777777754443321111      112334445566678888888887776 33332      22345556665442 


Q ss_pred             -CCHHHHHHHHHHHHhcCC
Q 047067          377 -KNVELGAYAAERIFELDP  394 (566)
Q Consensus       377 -g~~~~a~~~~~~~~~~~p  394 (566)
                       +.+++|+..|+++.+++|
T Consensus       253 ~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         253 SEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             TTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHhhcCH
Confidence             346677766666555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=8.1e-07  Score=73.72  Aligned_cols=92  Identities=20%  Similarity=0.119  Sum_probs=83.4

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 047067          335 VTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGR  412 (566)
Q Consensus       335 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  412 (566)
                      ......|.+.|++++|...|++. .+.| +...|..+..++...|++++|...++++++++|.+..++..++.+|...|+
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            34456788999999999999988 4455 678999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhC
Q 047067          413 LNDAARARKMMKES  426 (566)
Q Consensus       413 ~~~a~~~~~~m~~~  426 (566)
                      +++|...+++....
T Consensus        94 ~~eA~~~~~~a~~~  107 (159)
T d1a17a_          94 FRAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999999874

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.7e-06  Score=67.78  Aligned_cols=107  Identities=15%  Similarity=0.066  Sum_probs=78.6

Q ss_pred             HHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 047067          300 LCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLL---DRALKFIREM-PIEPTA---AVWGALLGA  372 (566)
Q Consensus       300 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~~  372 (566)
                      ..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++.   ++|..+++++ ...|+.   .+|..|..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            346667777788888888886666554 34566777777777765544   4688888886 444533   377888899


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047067          373 CRMHKNVELGAYAAERIFELDPHDSGPHILLANIY  407 (566)
Q Consensus       373 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  407 (566)
                      |...|++++|++.++++++++|++..+...+..+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            99999999999999999999999986665554433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7.4e-06  Score=68.46  Aligned_cols=134  Identities=12%  Similarity=0.004  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL  341 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  341 (566)
                      ..+......+.+.|++++|+..|++.+..-  |....           -....... ...       .....|+.+..+|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~-----------~~~~~~~~-~~~-------~~~~~~~nla~~y   72 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS-----------FSNEEAQK-AQA-------LRLASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC-----------CCSHHHHH-HHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhccc-----------cchHHHhh-hch-------hHHHHHHHHHHHH
Confidence            445566777888899999999998887631  11000           00000000 000       0123567788899


Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067          342 GRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA  416 (566)
Q Consensus       342 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  416 (566)
                      .+.|++++|...+++. .+.| ++..|..+..++...|++++|+..++++++++|+++.+...+..+..+.+...+.
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887 4456 6789999999999999999999999999999999999999888888776665544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.2e-05  Score=67.06  Aligned_cols=63  Identities=10%  Similarity=-0.038  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      .+|+.+..+|...|++++|+..++++++++|+++.++..++.+|...|++++|...|++..+.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            467778888999999999999999999999999999999999999999999999999999874

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.22  E-value=0.00028  Score=63.19  Aligned_cols=225  Identities=10%  Similarity=-0.028  Sum_probs=128.6

Q ss_pred             ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCcHhHHH
Q 047067          159 NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALAS----TGSLEQGKWVHAHVIKSGGQLVAFVGN  234 (566)
Q Consensus       159 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  234 (566)
                      |+..+..+...+.+.+++++|++.|++..+.|   |...+..+...+..    ..+...+...+....+.+         
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------   68 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------   68 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence            45566666667777777777777777776655   33333334444432    334445555544444433         


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Q 047067          235 TLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQ----HGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACS---  307 (566)
Q Consensus       235 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~---  307 (566)
                                               +...+..+...+..    .++.+.|...++...+.|..+.   ...+...+.   
T Consensus        69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~  120 (265)
T d1ouva_          69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGK  120 (265)
T ss_dssp             -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCS
T ss_pred             -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCC
Confidence                                     22223333222222    3455566666666655442211   111111111   


Q ss_pred             -ccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 047067          308 -HAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGR----AGLLDRALKFIREMPIEPTAAVWGALLGACRM----HKN  378 (566)
Q Consensus       308 -~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~  378 (566)
                       .......+...+......   .+...+..|...|..    ..+...+...++...-..+..+...|...+..    ..+
T Consensus       121 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d  197 (265)
T d1ouva_         121 VVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN  197 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred             cccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence             234455555555443332   234445555555553    45566666666665213356666556555554    568


Q ss_pred             HHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 047067          379 VELGAYAAERIFELDPHDSGPHILLANIYAS----AGRLNDAARARKMMKESGV  428 (566)
Q Consensus       379 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~  428 (566)
                      .+.|+..++++.+.+  ++.++..|+.+|.+    ..+.++|.+.|++..+.|.
T Consensus       198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            999999999998875  45688889999986    3478899999999988775

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3e-06  Score=66.29  Aligned_cols=92  Identities=9%  Similarity=-0.034  Sum_probs=77.2

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CchHHHHHHHH
Q 047067          335 VTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHK---NVELGAYAAERIFELDPHD--SGPHILLANIY  407 (566)
Q Consensus       335 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~  407 (566)
                      ..+++.+...+++++|.+.|++. ...| ++.++..+..++...+   +.++|+.+++++++.+|.+  ..++..|+.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45778888999999999999988 4445 6678888888887654   4567999999999988765  34788999999


Q ss_pred             HhcCChhHHHHHHHHHHhC
Q 047067          408 ASAGRLNDAARARKMMKES  426 (566)
Q Consensus       408 ~~~g~~~~a~~~~~~m~~~  426 (566)
                      .+.|++++|.+.++++.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            9999999999999999873

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.16  E-value=2.4e-05  Score=63.87  Aligned_cols=63  Identities=13%  Similarity=0.042  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      .+|..+..++...|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467778888999999999999999999999999999999999999999999999999998763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=1.8e-05  Score=66.01  Aligned_cols=132  Identities=11%  Similarity=0.052  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCC-CccHHHHHHHHHHh
Q 047067          263 SWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGV-EPEEAHYVTFVDLL  341 (566)
Q Consensus       263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~  341 (566)
                      .+......+...|++++|+..|.+.++.  .+.          ...........         .+ +.....|..+..+|
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~~---------~~~~~~~~~~~nla~~~   87 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADGA---------KLQPVALSCVLNIGACK   87 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHHG---------GGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHHH---------HhChhhHHHHHHHHHHH
Confidence            3455566778889999999888887652  100          00001111100         11 12345677788899


Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH
Q 047067          342 GRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND  415 (566)
Q Consensus       342 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  415 (566)
                      .+.|++++|+..++++ .+.| +...|..+..++...|++++|+..++++++++|+++.+...+..++.+.....+
T Consensus        88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1          88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888 6666 567899999999999999999999999999999998888888777765554444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=6.6e-06  Score=65.08  Aligned_cols=92  Identities=12%  Similarity=0.054  Sum_probs=76.7

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 047067          334 YVTFVDLLGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSG-------PHILLA  404 (566)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~  404 (566)
                      +..+...|.+.|++++|.+.|++. .+.| +...|..+..+|...|+++.|+..++++++++|.++.       +|..++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            445677888899999999999877 4445 5788999999999999999999999999999988765       455677


Q ss_pred             HHHHhcCChhHHHHHHHHHHh
Q 047067          405 NIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       405 ~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      ..+...+++++|...+++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            778888899999999988764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.07  E-value=4.2e-05  Score=63.56  Aligned_cols=143  Identities=11%  Similarity=-0.006  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHh
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLL  341 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  341 (566)
                      ..+......+.+.|++.+|+..|++.+..  .|..           .....+... ....       .....|..+..+|
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~-----------~~~~~~~~~-~~~~-------~~~~~~~Nla~~~   74 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEME-----------YGLSEKESK-ASES-------FLLAAFLNLAMCY   74 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTC-----------CSCCHHHHH-HHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh-----------hccchhhhh-hcch-------hHHHHHHhHHHHH
Confidence            45566677788888888888888776542  0000           000000000 0000       0123566678889


Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhH-HHH
Q 047067          342 GRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLND-AAR  418 (566)
Q Consensus       342 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~  418 (566)
                      .+.|++++|...+++. .+.| +..+|..+..++...|++++|+..++++++++|+++.+...+..+....+...+ ..+
T Consensus        75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk  154 (168)
T d1kt1a1          75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRR  154 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999999887 4445 678999999999999999999999999999999999998888888877766543 455


Q ss_pred             HHHHHHh
Q 047067          419 ARKMMKE  425 (566)
Q Consensus       419 ~~~~m~~  425 (566)
                      ++..|-+
T Consensus       155 ~~~~~f~  161 (168)
T d1kt1a1         155 TYANMFK  161 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.04  E-value=2.3e-05  Score=65.23  Aligned_cols=65  Identities=11%  Similarity=0.008  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          362 TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       362 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.|++..+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34577888899999999999999999999999999999999999999999999999999999873

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.99  E-value=3.7e-05  Score=62.77  Aligned_cols=128  Identities=9%  Similarity=-0.080  Sum_probs=93.4

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHH
Q 047067          261 VVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDL  340 (566)
Q Consensus       261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  340 (566)
                      ...+......+.+.|++.+|+..|.+.+..  .|...           ... +.......  .    .....+|..+...
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~-~~~~~~~~--~----~~~~~~~~Nla~~   76 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWD-DQILLDKK--K----NIEISCNLNLATC   76 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCC-CHHHHHHH--H----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhh-hHHHHHhh--h----hHHHHHHhhHHHH
Confidence            346677778888999999999999988763  11100           000 00000000  0    1123467778899


Q ss_pred             hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          341 LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       341 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      |.+.|++++|.+.+++. .+.| +..+|..+..++...|++++|+..++++++++|+++.+...+..+..
T Consensus        77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999987 4456 67899999999999999999999999999999999887776655544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.98  E-value=0.0048  Score=54.69  Aligned_cols=140  Identities=9%  Similarity=-0.090  Sum_probs=87.1

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CChHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047067          128 NVYVGSSLLDMYARFDQMDDAWFLFTALES-KNEVSWNALIAGHAR----KSEGEKALRTFSEMLREGFEPTHFSYSSVF  202 (566)
Q Consensus       128 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll  202 (566)
                      |+..+..|...+.+.+++++|.+.|++..+ .|..++..|...|..    ..+...|...+......+   +......+.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~   77 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   77 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence            455677788888999999999999998765 477777778877776    668888999998887765   233333333


Q ss_pred             HHHh----ccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Q 047067          203 TALA----STGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAK----SGSIEDAEKVFNRLL-KRDVVSWNSMLTGCAQ  273 (566)
Q Consensus       203 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~  273 (566)
                      ..+.    ...+.+.+...++...+.|...   ....+...+..    ......|...+.... ..+...+..|...|..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence            3332    3456778888888887766322   12222222322    233444555444432 2344555555555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.97  E-value=9.3e-05  Score=61.36  Aligned_cols=63  Identities=10%  Similarity=0.001  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          364 AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       364 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      .+|..+..++...|++++|+..++++++++|.+..+|..++.+|...|++++|...++++.+.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456667788999999999999999999999999999999999999999999999999999874

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.90  E-value=3.9e-05  Score=64.31  Aligned_cols=69  Identities=17%  Similarity=0.033  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccC
Q 047067          363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKE-----SGVKKE  431 (566)
Q Consensus       363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~  431 (566)
                      ...+..+..++...|++++|+..++++++.+|.+...|..++.+|...|++++|.+.|+++.+     .|+.|.
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            357788899999999999999999999999999999999999999999999999999999854     577654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.2e-06  Score=85.54  Aligned_cols=219  Identities=9%  Similarity=-0.019  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHh
Q 047067          178 KALRTFSEMLREGFEPTH-FSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVA-FVGNTLVDMYAKSGSIEDAEKVFNR  255 (566)
Q Consensus       178 ~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~  255 (566)
                      +|.+.|++...  ++||. ..+..+..++...++++++   +++++...  |+. ...+...... + ..+..+.+.++.
T Consensus         4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHHH
T ss_pred             HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHHH
Confidence            67788887766  34543 2333444455555555543   55555443  111 1111111111 1 112344455544


Q ss_pred             cCC----CChhHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC
Q 047067          256 LLK----RDVVSWNSMLTG--CAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE  328 (566)
Q Consensus       256 ~~~----~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  328 (566)
                      ..+    ++..-......+  +...+.++.|+..+.+..+  +.| +...+..+...+.+.|+.++|...+......  .
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~  150 (497)
T d1ya0a1          75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I  150 (497)
T ss_dssp             HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH--H
T ss_pred             hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C
Confidence            321    122211111111  1223344444444443333  233 3455666666777777777777766333321  1


Q ss_pred             ccHHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047067          329 PEEAHYVTFVDLLGRAGLLDRALKFIREM-PIEPTA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANI  406 (566)
Q Consensus       329 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  406 (566)
                      | ...+..+.+++...|++++|...|++. .+.|+. ..|+.|...+...|+..+|...|.+++...|+.+.++..|...
T Consensus       151 ~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~  229 (497)
T d1ya0a1         151 C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            1 245666777788888888888888777 445644 6778888888888888888888888888887777777777776


Q ss_pred             HHhc
Q 047067          407 YASA  410 (566)
Q Consensus       407 ~~~~  410 (566)
                      +.+.
T Consensus       230 ~~~~  233 (497)
T d1ya0a1         230 LSKA  233 (497)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=0.0023  Score=58.70  Aligned_cols=278  Identities=12%  Similarity=0.012  Sum_probs=150.6

Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCChhHHHHHHHHHc
Q 047067           25 NDIAMQNTILNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLGLKPNQFTLSSVLKASG  104 (566)
Q Consensus        25 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~  104 (566)
                      ||..--..+.+.+-+.|.++.|..+|..+..     |..++..+.+.++++.|.+++.+.      -+..+|..+..+|.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~   80 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV   80 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence            4544455667778889999999999986644     888889999999999998887654      25568888888887


Q ss_pred             cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCChHHHHHHHHHHHhCCChhHHHH
Q 047067          105 AGATDDKFGRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALE---SKNEVSWNALIAGHARKSEGEKALR  181 (566)
Q Consensus       105 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~  181 (566)
                      ...... .+     .+.......++.....++..|-..|.+++...+++...   ..+...++-++..|++.+ .++.++
T Consensus        81 ~~~e~~-la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e  153 (336)
T d1b89a_          81 DGKEFR-LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE  153 (336)
T ss_dssp             HTTCHH-HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             hCcHHH-HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence            765554 32     12222333455555678899999999999999998643   346777888999888864 444444


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 047067          182 TFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDV  261 (566)
Q Consensus       182 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  261 (566)
                      .++..   .-..|   ...++..|.+.+-+++                      ++-.|.+.|++++|..+.-.-+ +++
T Consensus       154 ~l~~~---s~~y~---~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~i~~~-~~~  204 (336)
T d1b89a_         154 HLELF---WSRVN---IPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITMMNHP-TDA  204 (336)
T ss_dssp             HHHHH---STTSC---HHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHHHHST-TTT
T ss_pred             HHHhc---cccCC---HHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHHHHcc-hhh
Confidence            44332   11222   2334555555554443                      4455666666666655533211 112


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------HHccCCHHHHHHHHHhHHhhCCC
Q 047067          262 VSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTA-------------CSHAGLLDEGQGYFALMKKHGVE  328 (566)
Q Consensus       262 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-------------~~~~g~~~~a~~~~~~~~~~~~~  328 (566)
                      ......+..+.+..+.+...++....++.  .|+.  .+.++..             +.+.+++.....+++.....+  
T Consensus       205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n--  278 (336)
T d1b89a_         205 WKEGQFKDIITKVANVELYYRAIQFYLEF--KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN--  278 (336)
T ss_dssp             CCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC--
T ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC--
Confidence            22233445555555555444444443332  2322  2333333             333444444444443333333  


Q ss_pred             ccHHHHHHHHHHhhhcCCHHHHHHHHHh
Q 047067          329 PEEAHYVTFVDLLGRAGLLDRALKFIRE  356 (566)
Q Consensus       329 p~~~~~~~li~~~~~~g~~~~A~~~~~~  356 (566)
                       +..+.++|.+.|...++++.-.+.+++
T Consensus       279 -~~~vn~al~~lyie~~d~~~l~~~i~~  305 (336)
T d1b89a_         279 -NKSVNESLNNLFITEEDYQALRTSIDA  305 (336)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence             234556666666666665554444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.74  E-value=0.00014  Score=55.58  Aligned_cols=88  Identities=9%  Similarity=-0.082  Sum_probs=43.7

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 047067          166 LIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGS  245 (566)
Q Consensus       166 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  245 (566)
                      +...+.+.|++++|+..|++..... +-+...|..+..++...+++++|...+..+++.. +.+..++..+...|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            3444555555555555555555432 1134444445555555555555555555555443 3334444445555555555


Q ss_pred             HHHHHHHHHh
Q 047067          246 IEDAEKVFNR  255 (566)
Q Consensus       246 ~~~A~~~~~~  255 (566)
                      +++|.+.|++
T Consensus       100 ~~~A~~~l~~  109 (112)
T d1hxia_         100 ANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.8e-05  Score=78.70  Aligned_cols=220  Identities=10%  Similarity=-0.064  Sum_probs=121.6

Q ss_pred             HHHHHHHhCCC--C-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047067          147 DAWFLFTALES--K-NEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIK  223 (566)
Q Consensus       147 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  223 (566)
                      +|.+.|++..+  | ...+|..+..+|...+++++|   |+++...  .|+...-..+...+- ...+..+.+.++...+
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k   77 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQAK   77 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcc
Confidence            56677776543  2 345677777788888888776   6666553  232111000100000 1113345555555554


Q ss_pred             hCCCCcHhHH--HHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047067          224 SGGQLVAFVG--NTLVDMYAKSGSIEDAEKVFNRLL---KRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVT  298 (566)
Q Consensus       224 ~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  298 (566)
                      ....++..-.  ..+...+...+.++.|+..++...   .++...|..+...+.+.|+.++|...+.+....  .| ..+
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~  154 (497)
T d1ya0a1          78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHC  154 (497)
T ss_dssp             CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHH
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHH
Confidence            4333332222  222233344566777777776653   235667888889999999999999988877652  22 357


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc
Q 047067          299 FLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM-P-IEPTAAVWGALLGACRMH  376 (566)
Q Consensus       299 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~  376 (566)
                      +..+...+...|++++|...|.+..+.. +.+...|+.|...|...|+..+|...|.+. . ..|...++.+|...+.+.
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            7888899999999999999997777654 345678999999999999999999999887 2 256778888888776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.63  E-value=3.7e-05  Score=62.06  Aligned_cols=124  Identities=11%  Similarity=0.045  Sum_probs=71.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHH
Q 047067          271 CAQHGLGKATVRWFEKMLRNGIAP-NQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDR  349 (566)
Q Consensus       271 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  349 (566)
                      |-+.+.+++|+..|++..+.  .| +...+..+..++...+++..+.+                         ..+.+++
T Consensus         7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~   59 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQE   59 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHH
Confidence            44556677777777777774  34 34555556555543322211111                         1122344


Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHH
Q 047067          350 ALKFIREM-PIEP-TAAVWGALLGACRMHK-----------NVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDA  416 (566)
Q Consensus       350 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  416 (566)
                      |...|++. .+.| +..+|..+..+|...|           +++.|.+.|+++++++|++...+..|....       .|
T Consensus        60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka  132 (145)
T d1zu2a1          60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KA  132 (145)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------TH
T ss_pred             HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HH
Confidence            55555444 3334 3445555555554433           368899999999999999986666555543       55


Q ss_pred             HHHHHHHHhCCC
Q 047067          417 ARARKMMKESGV  428 (566)
Q Consensus       417 ~~~~~~m~~~g~  428 (566)
                      .+++.+..++|+
T Consensus       133 ~~~~~e~~k~~~  144 (145)
T d1zu2a1         133 PQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHSSS
T ss_pred             HHHHHHHHHHhc
Confidence            566666666654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.62  E-value=0.00014  Score=59.39  Aligned_cols=88  Identities=18%  Similarity=0.029  Sum_probs=65.6

Q ss_pred             HHHhhhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------
Q 047067          338 VDLLGRAGLLDRALKFIREM----PIEPT----------AAVWGALLGACRMHKNVELGAYAAERIFELDPH--------  395 (566)
Q Consensus       338 i~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------  395 (566)
                      ...+.+.|++++|.+.|++.    +..|+          ...|+.+..++...|++++|...+++++++.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            34455667777777776655    22222          357888888899999999999999998875432        


Q ss_pred             ---CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          396 ---DSGPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       396 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                         ...++..++.+|...|++++|...|++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               122577899999999999999999999876

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.60  E-value=0.025  Score=51.54  Aligned_cols=208  Identities=8%  Similarity=-0.009  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 047067          132 GSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSL  211 (566)
Q Consensus       132 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~  211 (566)
                      |..++..|.+.+++..|.+++.+.  .+..+|..+...+.+.....-|     .+.......+......++..|...|.+
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~  115 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYF  115 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCCh
Confidence            344555555666666666555543  2445666666666655544332     122222334445555666666666666


Q ss_pred             HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHHcCCHHHH
Q 047067          212 EQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKR-----------DVVSWNSMLTGCAQHGLGKAT  280 (566)
Q Consensus       212 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A  280 (566)
                      ++...+++...... ..+..+++-++..|++.+. ++-.+.+......           ....|..++-.|.+.|++++|
T Consensus       116 e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A  193 (336)
T d1b89a_         116 EELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA  193 (336)
T ss_dssp             HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHH
Confidence            66666666554322 4455556666666666542 3333333332111           112355566666666666666


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 047067          281 VRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRALKFIREM  357 (566)
Q Consensus       281 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  357 (566)
                      +.+.-   +  -.|+.......+..+.+..+++...++.....+.  .|+  ..+.|+......-+..+..+.+++-
T Consensus       194 ~~~~i---~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~k~  261 (336)
T d1b89a_         194 IITMM---N--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKV  261 (336)
T ss_dssp             HHHHH---H--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred             HHHHH---H--cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHHHHHHHhc
Confidence            55432   2  2333333344455566666766666655333332  233  2345555555555666666665554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.57  E-value=2.7e-05  Score=62.84  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047067          341 LGRAGLLDRALKFIREM-PIEP-TAAVWGALLGACRM----------HKNVELGAYAAERIFELDPHDSGPHILLANIYA  408 (566)
Q Consensus       341 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  408 (566)
                      |-+.+.+++|.+.|+.. .+.| ++.+|..+..++..          .+.+++|+..++++++++|+++.+|..++.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            34555667777777666 3344 44555555555543          244688999999999999999999999999998


Q ss_pred             hcCC-----------hhHHHHHHHHHHh
Q 047067          409 SAGR-----------LNDAARARKMMKE  425 (566)
Q Consensus       409 ~~g~-----------~~~a~~~~~~m~~  425 (566)
                      ..|+           +++|.+.|++..+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            8764           5778888888876

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00022  Score=52.44  Aligned_cols=72  Identities=11%  Similarity=0.065  Sum_probs=56.9

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047067          334 YVTFVDLLGRAGLLDRALKFIREM----P----IEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLA  404 (566)
Q Consensus       334 ~~~li~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  404 (566)
                      +-.+...+.+.|++++|...|++.    +    ..++ ..+++.|..++.+.|++++|+..++++++++|+++.++..+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            345667777888888887777765    1    1233 468899999999999999999999999999999998877764


Q ss_pred             H
Q 047067          405 N  405 (566)
Q Consensus       405 ~  405 (566)
                      .
T Consensus        88 ~   88 (95)
T d1tjca_          88 Y   88 (95)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.0005  Score=53.74  Aligned_cols=26  Identities=12%  Similarity=0.217  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047067          264 WNSMLTGCAQHGLGKATVRWFEKMLR  289 (566)
Q Consensus       264 ~~~li~~~~~~g~~~~A~~~~~~m~~  289 (566)
                      |..+...+...+++++|+..|++...
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            33344444455555555555555444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.0055  Score=50.65  Aligned_cols=122  Identities=13%  Similarity=0.123  Sum_probs=75.8

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH
Q 047067          201 VFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLTGCAQHGLGKAT  280 (566)
Q Consensus       201 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  280 (566)
                      ........|++++|.+.+...+..--.+-.          ......+-+...-..+.......+..+...+...|++++|
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l----------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVL----------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTT----------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCccccc----------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            334566778888888888777764210000          0000000000111111122345677788888889999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhH-----HhhCCCccHHH
Q 047067          281 VRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALM-----KKHGVEPEEAH  333 (566)
Q Consensus       281 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~-----~~~~~~p~~~~  333 (566)
                      +..++++++.. +-+...|..++.++...|+.++|.+.|+.+     .+.|+.|...+
T Consensus        87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            99999888842 236778888888888899998888888554     24678887654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.12  E-value=0.0032  Score=50.85  Aligned_cols=64  Identities=9%  Similarity=-0.044  Sum_probs=41.4

Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047067          333 HYVTFVDLLGRAGLLDRALKFIREM--------PIEPT-----AAVWGALLGACRMHKNVELGAYAAERIFELDPHD  396 (566)
Q Consensus       333 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  396 (566)
                      .|+.+..+|.+.|++++|.+.+++.        ...++     ...+..+..++...|++++|+..|++++++.|..
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            4445555555566665555554443        11222     1356777888999999999999999999876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.12  E-value=0.00098  Score=59.26  Aligned_cols=125  Identities=10%  Similarity=-0.041  Sum_probs=73.2

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCcc-HHHHHHHHHHhhhcCCHHHH
Q 047067          272 AQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPE-EAHYVTFVDLLGRAGLLDRA  350 (566)
Q Consensus       272 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A  350 (566)
                      .+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+.  .|+ ...+..+..++...+..+++
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence            34577777777777777642 224566777777777777777777777555543  233 33344444444444444433


Q ss_pred             HHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          351 LKFIREM--PIEPT-AAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       351 ~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      ..-....  ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            3322221  11232 2333444556777888888888888888888877644

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0025  Score=46.50  Aligned_cols=64  Identities=14%  Similarity=-0.071  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047067          363 AAVWGALLGACRMHKNVELGAYAAERIFELDPHD-------SGPHILLANIYASAGRLNDAARARKMMKES  426 (566)
Q Consensus       363 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  426 (566)
                      ...+-.+...+...|+++.|...+++++++.|.+       ..++..|+.+|.+.|++++|...++++.+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3344567788999999999999999999875443       346889999999999999999999999874

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.66  E-value=0.0031  Score=55.85  Aligned_cols=52  Identities=19%  Similarity=0.174  Sum_probs=23.9

Q ss_pred             hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 047067          172 RKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKS  224 (566)
Q Consensus       172 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  224 (566)
                      +.|++++|+..|++.++.. +-|...+..+...++..|++++|...++...+.
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3455555555555554432 223344444444444444444444444444443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.75  E-value=0.15  Score=37.76  Aligned_cols=141  Identities=9%  Similarity=-0.021  Sum_probs=96.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcCCHHHH
Q 047067          271 CAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAGLLDRA  350 (566)
Q Consensus       271 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A  350 (566)
                      +.-.|..++..++..+....   .+..-|+-++--....-+-+...+.++..-+   ..|          +..++++...
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHH
Confidence            34467777777777777663   2444455555444444444444444422211   111          2456777777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 047067          351 LKFIREMPIEPTAAVWGALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARARKMMKESGVK  429 (566)
Q Consensus       351 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~  429 (566)
                      ...+-.++  .+....+..+.....+|+-+.-.++++.+++-+..+|.....++++|.+.|...++..++.+.-++|++
T Consensus        76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            77777664  344556677788899999999999999999877777889999999999999999999999999999974

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=1.2  Score=42.05  Aligned_cols=116  Identities=9%  Similarity=0.036  Sum_probs=59.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChH
Q 047067          134 SLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREG-FEPTHFSYSSVFTALASTGSLE  212 (566)
Q Consensus       134 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~  212 (566)
                      .-+..+.+.++++.....+..-+ .++..--....+..+.|+.++|...+...-..| ..|+.                 
T Consensus        77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~-----------------  138 (450)
T d1qsaa1          77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA-----------------  138 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH-----------------
T ss_pred             HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH-----------------
Confidence            33455667777776665554322 244444456667777788888777776665544 22322                 


Q ss_pred             HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 047067          213 QGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAEKVFNRLLKRDVVSWNSMLT  269 (566)
Q Consensus       213 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~  269 (566)
                       ...++..+.+.| ..+...+-.-+......|+...|..+...+...........+.
T Consensus       139 -c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~  193 (450)
T d1qsaa1         139 -CDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIIS  193 (450)
T ss_dssp             -HHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred             -HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHH
Confidence             122333333333 2223333334444555566666666666554443333333333

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.24  E-value=0.31  Score=37.13  Aligned_cols=51  Identities=14%  Similarity=0.110  Sum_probs=36.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 047067          376 HKNVELGAYAAERIFELDPHDSGPHILLANIYAS----AGRLNDAARARKMMKESGV  428 (566)
Q Consensus       376 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~  428 (566)
                      ..+.+.|.+.+++..+.+  ++.+...|+.+|..    ..+.++|.+++++..+.|.
T Consensus        72 ~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          72 KKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             chhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            345677777787777654  34567777777776    3577788888888877765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.06  E-value=0.55  Score=35.60  Aligned_cols=16  Identities=13%  Similarity=0.181  Sum_probs=9.5

Q ss_pred             ChhHHHHHHHHHHHCC
Q 047067          175 EGEKALRTFSEMLREG  190 (566)
Q Consensus       175 ~~~~A~~~~~~m~~~g  190 (566)
                      ++++|+++|++..+.|
T Consensus         8 d~~~A~~~~~kaa~~g   23 (133)
T d1klxa_           8 DLKKAIQYYVKACELN   23 (133)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            4556666666665554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.69  E-value=0.3  Score=36.41  Aligned_cols=48  Identities=17%  Similarity=0.074  Sum_probs=30.4

Q ss_pred             CHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047067          378 NVELGAYAAERIFELDPHDS-GPHILLANIYASAGRLNDAARARKMMKE  425 (566)
Q Consensus       378 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~  425 (566)
                      +.++|+.+++++++.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus        53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            34566666666666666543 4555666666677777777776666665

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=3.6  Score=38.44  Aligned_cols=349  Identities=10%  Similarity=0.008  Sum_probs=185.5

Q ss_pred             HHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHCC-CCCChhHHHHHHHHHccCCCchHH
Q 047067           34 LNAYAKCGCLDEARKLFDEMPVKDMVTWTALISGYSQNDQPENAIILFSQMLRLG-LKPNQFTLSSVLKASGAGATDDKF  112 (566)
Q Consensus        34 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~  112 (566)
                      +..+++.+++......+..-+ .++..--....+..+.|+..+|...+..+-..| ..|+                   .
T Consensus        79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~-------------------~  138 (450)
T d1qsaa1          79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN-------------------A  138 (450)
T ss_dssp             HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT-------------------H
T ss_pred             HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-------------------H
Confidence            455566677766665554322 233333345566667777777777776665544 2222                   3


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 047067          113 GRQVHAFCLKYGYDWNVYVGSSLLDMYARFDQMDDAWFLFTALESKNEVSWNALIAGHARKSEGEKALRTFSEMLREGFE  192 (566)
Q Consensus       113 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  192 (566)
                      ...++....+.|. .+...+-.-+......|+...|..+...++.........++.....   +..+......     ..
T Consensus       139 c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~-----~~  209 (450)
T d1qsaa1         139 CDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TG  209 (450)
T ss_dssp             HHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SC
T ss_pred             HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----CC
Confidence            4445555555443 3333444555667777899999999888876655555555555432   3333322211     12


Q ss_pred             CCHHHHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCcHhHH---HHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHH
Q 047067          193 PTHFSYSSVFTALAS--TGSLEQGKWVHAHVIKSGGQLVAFVG---NTLVDMYAKSGSIEDAEKVFNRLL--KRDVVSWN  265 (566)
Q Consensus       193 pd~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~  265 (566)
                      ++......+..+..+  ..+.+.+..++...............   ..+.......+..+.+...++...  ..+.....
T Consensus       210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  289 (450)
T d1qsaa1         210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE  289 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH
T ss_pred             CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHH
Confidence            333333333333332  24666777777666554322222111   112222233455666666665542  22333323


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHHHhhhcC
Q 047067          266 SMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVDLLGRAG  345 (566)
Q Consensus       266 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  345 (566)
                      -.+......+++..+...+..|... ..-...-.--+..+....|+.++|..+|.....   .++  -|.-|..  .+.|
T Consensus       290 w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg  361 (450)
T d1qsaa1         290 RRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA--QRIG  361 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH--HHTT
T ss_pred             HHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH--HHcC
Confidence            3444455667888888888877542 122233445566778888888888888865543   233  3333321  1112


Q ss_pred             CHHHHHHHH-HhCCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 047067          346 LLDRALKFI-REMPIEPTA-AVW---GALLGACRMHKNVELGAYAAERIFELDPHDSGPHILLANIYASAGRLNDAARAR  420 (566)
Q Consensus       346 ~~~~A~~~~-~~~~~~p~~-~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  420 (566)
                      ..-   .+- ...+..++. ..-   ..-+..+...|....|...+..+.+..  ++.-...++....+.|.++.|+...
T Consensus       362 ~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~  436 (450)
T d1qsaa1         362 EEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT  436 (450)
T ss_dssp             CCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHH
Confidence            100   000 000111111 111   122345667899999998888877533  3446677888888999999988776


Q ss_pred             HHHH
Q 047067          421 KMMK  424 (566)
Q Consensus       421 ~~m~  424 (566)
                      .+..
T Consensus       437 ~~~~  440 (450)
T d1qsaa1         437 IAGK  440 (450)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            6653

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=89.20  E-value=3.1  Score=30.61  Aligned_cols=140  Identities=11%  Similarity=-0.010  Sum_probs=83.2

Q ss_pred             HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 047067          171 ARKSEGEKALRTFSEMLREGFEPTHFSYSSVFTALASTGSLEQGKWVHAHVIKSGGQLVAFVGNTLVDMYAKSGSIEDAE  250 (566)
Q Consensus       171 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  250 (566)
                      .-.|..++..++..+....   .+..-|+.++--....-+-+...+.++.+-+   -.|          ..+|+++....
T Consensus        13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv   76 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV   76 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred             HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHH
Confidence            3456666666666666542   2334444444444444444433333333221   111          12345555544


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCC
Q 047067          251 KVFNRLLKRDVVSWNSMLTGCAQHGLGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVE  328 (566)
Q Consensus       251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  328 (566)
                      ..+-.+. .+....+.-+..+.+.|+-++-.++++.+.+. -+|++.....+..||.+.|...++-.++...-+.|++
T Consensus        77 ~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          77 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            4444432 23344566677788888888888888887774 4778888888888999999998888888777776754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.98  E-value=1.6  Score=32.28  Aligned_cols=54  Identities=9%  Similarity=0.082  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 047067          346 LLDRALKFIREM-PIEP-TA-AVWGALLGACRMHKNVELGAYAAERIFELDPHDSGP  399 (566)
Q Consensus       346 ~~~~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  399 (566)
                      +++++..++++. ...| +. ..|-.|.-+|.+.|+++.|.+.++++++++|++..+
T Consensus        53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            445667777666 2234 33 466677778889999999999999999999998644

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.48  E-value=3  Score=29.06  Aligned_cols=63  Identities=11%  Similarity=0.195  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhHHhhCCCccHHHHHHHHH
Q 047067          276 LGKATVRWFEKMLRNGIAPNQVTFLCVLTACSHAGLLDEGQGYFALMKKHGVEPEEAHYVTFVD  339 (566)
Q Consensus       276 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  339 (566)
                      +.-++..-++.+....+.|++....+.+.||.+.+++..|.++|+.++.. ..++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence            45567777777878888999999999999999999999999999765543 2334556766654