Citrus Sinensis ID: 047146
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 608 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LN01 | 741 | Pentatricopeptide repeat- | yes | no | 0.962 | 0.789 | 0.379 | 1e-126 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.927 | 0.820 | 0.365 | 1e-120 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.978 | 0.806 | 0.341 | 1e-115 | |
| Q9C866 | 570 | Pentatricopeptide repeat- | no | no | 0.847 | 0.903 | 0.406 | 1e-114 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.942 | 0.793 | 0.355 | 1e-112 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.917 | 0.819 | 0.363 | 1e-110 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.937 | 0.821 | 0.357 | 1e-109 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.860 | 0.763 | 0.379 | 1e-109 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.807 | 0.704 | 0.362 | 1e-106 | |
| Q9CAY1 | 623 | Putative pentatricopeptid | no | no | 0.810 | 0.791 | 0.392 | 1e-106 |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/646 (37%), Positives = 380/646 (58%), Gaps = 61/646 (9%)
Query: 3 SPLTVASGS------------RYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKT 50
SPLTV S S Y+ I LSLLH L+S L+ HA +IK
Sbjct: 6 SPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQS------LRIIHAQMIKI 59
Query: 51 GSPQHQTQILYDKIISLS-RGNEIENL--------SLQNPQVYLYNFIIQCLS-NANPLE 100
G H T K+I E L ++Q P + ++N + + + +++P+
Sbjct: 60 G--LHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVS 117
Query: 101 AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMR 160
A+ LY M+ GLLPN+YT P+VLK+C +S++ + GQQ+H + +K ++YV +L+
Sbjct: 118 ALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLIS 177
Query: 161 LYAVCGLIKAVHKLFHFRQH-------------------PQAQR--------DLVSWTTL 193
+Y G ++ HK+F H AQ+ D+VSW +
Sbjct: 178 MYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAM 237
Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
I Y + EA+ F DM + N+RPD +V V+SAC++ G + LG ++H +I D+ F
Sbjct: 238 ISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGF 297
Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF 313
++ I NALID+Y KCG + +A +F+ +P K+V+SWN++I G TH +KEAL +F
Sbjct: 298 G--SNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLF 355
Query: 314 RRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK--NHINTDGFIGNALVDMYA 371
+ M G P+D T++ +L +CA++G +++G+W+H Y+DK + + +L+DMYA
Sbjct: 356 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYA 415
Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
KCG I+ A VF S+ + + S+ AMI G A+HG+A + D+FS M ++GI+PD++TFVG
Sbjct: 416 KCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVG 475
Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
+LSACSH+G+++ G F M++ Y + P+ EHYGCM+DL G +GL +EA ++I M +
Sbjct: 476 LLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEME 535
Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
PD +W +LL ACK+H VEL E ENL++ EPE G+Y+L++NIY+S RW E K R
Sbjct: 536 PDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTR 595
Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEI 597
+ ++ +KK PGCS +E+ +EF GDK HP+ EIY +L+E+
Sbjct: 596 ALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 641
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/615 (36%), Positives = 363/615 (59%), Gaps = 51/615 (8%)
Query: 35 KSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSR-GNEIEN-----LSLQNPQVYL 85
K+ Q KQ H+ I G +P Q ++ + SR G + + + P V +
Sbjct: 45 KTTDQFKQLHSQSITRGVAPNPTFQKKLF---VFWCSRLGGHVSYAYKLFVKIPEPDVVV 101
Query: 86 YNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ-SLRVGQQVHAYS 143
+N +I+ S + E + LY ML +G+ P+++T P++L + +L G+++H +
Sbjct: 102 WNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHV 161
Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
+K L SN+YV N L+++Y++CGL+ +F R + D+ SW +I Y +M
Sbjct: 162 VKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRR----CKEDVFSWNLMISGYNRMKEY 217
Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
E+I +M + + P + L++VLSACSK+ D L ++H Y+++ P + + N
Sbjct: 218 EESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSE--CKTEPSLRLEN 275
Query: 264 ALIDMYLKCG-------------------------------NIPSARKVFDEMPVKNVVS 292
AL++ Y CG N+ AR FD+MPV++ +S
Sbjct: 276 ALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRIS 335
Query: 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
W MI G G F E+L+IFR MQ G+ PD+FT+V VL +CA++G LE+G+W+ TY+D
Sbjct: 336 WTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYID 395
Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
KN I D +GNAL+DMY KCG ++A VF M RD +++TAM+VGLA +G+ +A+
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIK 455
Query: 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472
+F +M + I+PD++T++GVLSAC+H+G+V++ K F M + ++P HYGCMVD+
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDML 515
Query: 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532
GRAGL++EA ++++ MP+ P++ VWGALLGA ++H +AE+ + ++ EP+ Y
Sbjct: 516 GRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYA 575
Query: 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYK 592
L+ NIY+ RWK+ ++R+K+ + +KKTPG SL+EV G +EF GDKSH ++ EIY
Sbjct: 576 LLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYM 635
Query: 593 LLDEIMHQSKNHGYI 607
L+E+ +S Y+
Sbjct: 636 KLEELAQESTFAAYL 650
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/650 (34%), Positives = 380/650 (58%), Gaps = 55/650 (8%)
Query: 2 ASPLTVASGSRYNDINTFQQLSLLHQSPR----LESSKSVGQLKQFHAFIIKTGS---PQ 54
A PL++ R+ + + Q + ++ R +E S+ QLKQ H +I+TG+ P
Sbjct: 7 AQPLSLP---RHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPY 63
Query: 55 HQTQIL----YDKIISLSRGNEIENLSLQNPQVYLYNFIIQC-LSNANPLEAIALYREML 109
+++ SL ++ + + P + +N +I+ S +P+ +I + +M+
Sbjct: 64 SASKLFAMAALSSFASLEYARKVFD-EIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMV 122
Query: 110 IKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI 168
+ PN YT P+++KA + SL +GQ +H ++K+A+ S+V+V N+L+ Y CG +
Sbjct: 123 SESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDL 182
Query: 169 KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
+ K+F + ++D+VSW ++I +V+ P +A+ F M +++ + +V V
Sbjct: 183 DSACKVFTTIK----EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGV 238
Query: 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD----- 283
LSAC+K+ +L G ++ YI +N N+ ++ + NA++DMY KCG+I A+++FD
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNV--NLTLANAMLDMYTKCGSIEDAKRLFDAMEEK 296
Query: 284 --------------------------EMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
MP K++V+WN++I+ G+ EAL +F +Q
Sbjct: 297 DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQ 356
Query: 318 -GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376
+K + TLV L++CA +G LELG+W+H+Y+ K+ I + + +AL+ MY+KCG +
Sbjct: 357 LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDL 416
Query: 377 DQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436
+++ VF S++ RDV+ ++AMI GLA+HG +A+D+F +M + ++P+ VTF V AC
Sbjct: 417 EKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCAC 476
Query: 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV 496
SH GLV+E F M Y + P+ +HY C+VD+ GR+G + +A+ I++MP+ P V
Sbjct: 477 SHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV 536
Query: 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556
WGALLGACKIHA + LAE+ L+ EP DGA++L++NIY+ +W+ +LRK M+
Sbjct: 537 WGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRV 596
Query: 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
+KK PGCS +E+ G +EF GD +HP + ++Y L E+M + K++GY
Sbjct: 597 TGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGY 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/571 (40%), Positives = 341/571 (59%), Gaps = 56/571 (9%)
Query: 75 NLSL-QNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQS 132
N+SL Q P + +YN +++ L++ + +AL+ E+ +GL P+ +TLP VLK+ + +
Sbjct: 2 NMSLLQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRK 61
Query: 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTT 192
+ G++VH Y++K L + YV N+LM +YA G I+ HK+F + PQ RD+VSW
Sbjct: 62 VIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFD--EMPQ--RDVVSWNG 117
Query: 193 LIQAYVKMDYPTEAILSFFDMCQ-ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
LI +YV +AI F M Q +NL+ D +V LSACS L +L +G +I+R++
Sbjct: 118 LISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-T 176
Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM-------------------------- 285
F +S V I NAL+DM+ KCG + AR VFD M
Sbjct: 177 EFEMS--VRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARV 234
Query: 286 -----PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340
PVK+VV W +M+ G +F EAL++FR MQ G++PD+F LV +L CA G
Sbjct: 235 LFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGA 294
Query: 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG 400
LE GKW+H Y+++N + D +G ALVDMYAKCG I+ A VF +K RD S+T++I G
Sbjct: 295 LEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYG 354
Query: 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460
LA++G + +ALD++ EM VG+ D +TFV VL+AC+H G V EG K F M+ +N+QP
Sbjct: 355 LAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQP 414
Query: 461 QTEHYGCMVDLFGRAGLIREALDLIKSM------PLVPDAFVWGALLGACKIHAKVELAE 514
++EH C++DL RAGL+ EA +LI M LVP V+ +LL A + + V++AE
Sbjct: 415 KSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVP---VYCSLLSAARNYGNVKIAE 471
Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
V E L + E A+ L+ ++Y+S NRW++ +R+KMK+ ++K PGCS +E+ G
Sbjct: 472 RVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVG 531
Query: 575 YEFRKGDK--SHPKTLEIYKLLDEIMHQSKN 603
+EF GD SHPK EI +L HQ+ N
Sbjct: 532 HEFIVGDDLLSHPKMDEINSML----HQTTN 558
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 218/614 (35%), Positives = 350/614 (57%), Gaps = 41/614 (6%)
Query: 30 RLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSL-----QNPQVY 84
+L KS+ +KQ HA I++T L++ +S S N L++ P+
Sbjct: 18 KLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPESI 77
Query: 85 LYNFIIQCLSNANPLEAIALYREML--IKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
++N ++ LS ++ A L+ + + + G L LP +LKA + +L G ++H
Sbjct: 78 VFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLP-ILKAVSKVSALFEGMELHGV 136
Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
+ K A L + +V M +YA CG I +F H RD+V+W T+I+ Y +
Sbjct: 137 AFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSH----RDVVTWNTMIERYCRFGL 192
Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP----- 257
EA F +M +N+ PD MIL ++SAC + G++ I+ ++ +N +
Sbjct: 193 VDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTA 252
Query: 258 ------------------------DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW 293
++F+ A++ Y KCG + A+ +FD+ K++V W
Sbjct: 253 LVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCW 312
Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
+MI+ +EAL +F M G+KPD ++ V+++CAN+G L+ KWVH+ +
Sbjct: 313 TTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHV 372
Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
N + ++ I NAL++MYAKCG +D VF M R+V S+++MI L++HG+A AL +
Sbjct: 373 NGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSL 432
Query: 414 FSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473
F+ M Q +EP+EVTFVGVL CSH+GLVEEG K F M+ YN+ P+ EHYGCMVDLFG
Sbjct: 433 FARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFG 492
Query: 474 RAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533
RA L+REAL++I+SMP+ + +WG+L+ AC+IH ++EL + + ++ EP+ DGA +L
Sbjct: 493 RANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVL 552
Query: 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593
M+NIY+ + RW++ +R+ M+E+ V K G S ++ G+ +EF GDK H ++ EIY
Sbjct: 553 MSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAK 612
Query: 594 LDEIMHQSKNHGYI 607
LDE++ + K GY+
Sbjct: 613 LDEVVSKLKLAGYV 626
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/605 (36%), Positives = 342/605 (56%), Gaps = 47/605 (7%)
Query: 31 LESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSR--GNEIENL-SLQNPQVY 84
LE K + LKQ A +I G P ++++ +S SR ++ L ++NP ++
Sbjct: 60 LEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIF 119
Query: 85 LYNFIIQCLSNA-NPLEAIALYREMLIKGLL---PNTYTLPYVLKACWQSQSLRVGQQVH 140
+N I+ S + NP E+ LY++ML G P+ +T P + K C + +G +
Sbjct: 120 SWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMIL 179
Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
+ +K L +V N + ++A CG ++ K+F RDLVSW LI Y K+
Sbjct: 180 GHVLKLRLELVSHVHNASIHMFASCGDMENARKVFD----ESPVRDLVSWNCLINGYKKI 235
Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
+AI + M ++PD + ++ ++S+CS LGDL+ G + + Y+ +N ++ +
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT--IP 293
Query: 261 IHNALIDMYLKCGNIPSAR-------------------------------KVFDEMPVKN 289
+ NAL+DM+ KCG+I AR K+FD+M K+
Sbjct: 294 LVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKD 353
Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHT 349
VV WN+MI G + ++AL +F+ MQ KPD+ T++ L++C+ +G L++G W+H
Sbjct: 354 VVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHR 413
Query: 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409
Y++K ++ + +G +LVDMYAKCG I +A VF ++ R+ +YTA+I GLA+HG A
Sbjct: 414 YIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAST 473
Query: 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469
A+ F+EM GI PDE+TF+G+LSAC H G+++ G +F M +NL PQ +HY MV
Sbjct: 474 AISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMV 533
Query: 470 DLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529
DL GRAGL+ EA L++SMP+ DA VWGALL C++H VEL E + L+ +P G
Sbjct: 534 DLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSG 593
Query: 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLE 589
Y+L+ +Y N W++A + R+ M ER V+K PGCS +EV G EF DKS P++ +
Sbjct: 594 IYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEK 653
Query: 590 IYKLL 594
IY L
Sbjct: 654 IYDRL 658
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/584 (35%), Positives = 338/584 (57%), Gaps = 14/584 (2%)
Query: 31 LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENLSLQ------NPQVY 84
++S+ QLKQ HA ++ G + L K+I S + Q PQ++
Sbjct: 28 IDSATHKAQLKQIHARLLVLG--LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85
Query: 85 LYNFIIQCLSNANPLE-AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
+N II+ S N + A+ +Y M + + P+++T P++LKAC L++G+ VHA
Sbjct: 86 PWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145
Query: 144 MKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203
+ ++V+V N L+ LYA C + + +F P +R +VSWT ++ AY + P
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVFE--GLPLPERTIVSWTAIVSAYAQNGEP 203
Query: 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263
EA+ F M + +++PD + LV VL+A + L DL G IH + + PD+ I
Sbjct: 204 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI-- 261
Query: 264 ALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
+L MY KCG + +A+ +FD+M N++ WN+MI+G G +EA+D+F M ++P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321
Query: 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVF 383
D ++ +++CA +G LE + ++ Y+ ++ D FI +AL+DM+AKCG ++ A VF
Sbjct: 322 DTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF 381
Query: 384 RSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
RDV ++AMIVG +HG+A +A+ ++ M + G+ P++VTF+G+L AC+H+G+V
Sbjct: 382 DRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVR 441
Query: 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503
EG F M+ + + PQ +HY C++DL GRAG + +A ++IK MP+ P VWGALL A
Sbjct: 442 EGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500
Query: 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563
CK H VEL E + L +P G Y+ ++N+Y++ W ++R +MKE+ + K
Sbjct: 501 CKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDV 560
Query: 564 GCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
GCS VEV G FR GDKSHP+ EI + ++ I + K G++
Sbjct: 561 GCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFV 604
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/530 (37%), Positives = 316/530 (59%), Gaps = 7/530 (1%)
Query: 79 QNPQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQ 137
Q P ++LYN +I N + E + L+ + GL + +T P VLKAC ++ S ++G
Sbjct: 72 QFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGI 131
Query: 138 QVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY 197
+H+ +K +V +L+ +Y+ G + HKLF R +V+WT L Y
Sbjct: 132 DLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFD----EIPDRSVVTWTALFSGY 187
Query: 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257
EAI F M + ++PD +V VLSAC +GDL G I +Y+ + +
Sbjct: 188 TTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE--MEMQK 245
Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
+ F+ L+++Y KCG + AR VFD M K++V+W++MI G KE +++F +M
Sbjct: 246 NSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQML 305
Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
LKPD F++V L+SCA++G L+LG+W + +D++ T+ F+ NAL+DMYAKCG +
Sbjct: 306 QENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMA 365
Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
+ F VF+ MK +D+ A I GLA +G + +F + ++GI PD TF+G+L C
Sbjct: 366 RGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCV 425
Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
HAGL+++G + F +S VY L+ EHYGCMVDL+GRAG++ +A LI MP+ P+A VW
Sbjct: 426 HAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVW 485
Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557
GALL C++ +LAE V++ L+ EP G Y+ ++NIYS RW EA ++R M ++
Sbjct: 486 GALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKK 545
Query: 558 KVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
+KK PG S +E+ G+ +EF DKSHP + +IY L+++ ++ + G++
Sbjct: 546 GMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFV 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/533 (36%), Positives = 302/533 (56%), Gaps = 42/533 (7%)
Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLM 159
EA+ + M +G + N Y+ VL AC + G QVH+ K+ LS+VY+ + L+
Sbjct: 135 EALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALV 194
Query: 160 RLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR 219
+Y+ CG + ++F R++VSW +LI + + EA+ F M ++ +
Sbjct: 195 DMYSKCGNVNDAQRVF----DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250
Query: 220 PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279
PD + L V+SAC+ L + +G ++H + N L D+ + NA +DMY KC I AR
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKND-KLRNDIILSNAFVDMYAKCSRIKEAR 309
Query: 280 KVFDEMPV-------------------------------KNVVSWNSMIAGLTHRGQFKE 308
+FD MP+ +NVVSWN++IAG T G+ +E
Sbjct: 310 FIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEE 369
Query: 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI------NTDGFI 362
AL +F ++ + P ++ +L +CA++ L LG H ++ K+ D F+
Sbjct: 370 ALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFV 429
Query: 363 GNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
GN+L+DMY KCG +++ + VFR M RD S+ AMI+G A +G +AL++F EM + G
Sbjct: 430 GNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGE 489
Query: 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482
+PD +T +GVLSAC HAG VEEG +F M+R + + P +HY CMVDL GRAG + EA
Sbjct: 490 KPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAK 549
Query: 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542
+I+ MP+ PD+ +WG+LL ACK+H + L + V E L+ EP G Y+L++N+Y+
Sbjct: 550 SMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELG 609
Query: 543 RWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLD 595
+W++ + +RK M++ V K PGCS +++ G + F DKSHP+ +I+ LLD
Sbjct: 610 KWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLD 662
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/499 (39%), Positives = 301/499 (60%), Gaps = 6/499 (1%)
Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV-GQQVHAYSMKTALLSNVYVFNTL 158
E+I+LYR ML G P+ ++ P++LK+C S SL V GQQ+H + K + +V L
Sbjct: 36 ESISLYRSMLRSGSSPDAFSFPFILKSC-ASLSLPVSGQQLHCHVTKGGCETEPFVLTAL 94
Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
+ +Y CGL+ K+F ++PQ+ + V + LI Y T+A F M + +
Sbjct: 95 ISMYCKCGLVADARKVFE--ENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGV 152
Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
D + ++ ++ C+ L LG +H L +V + N+ I MY+KCG++ +
Sbjct: 153 SVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG--GLDSEVAVLNSFITMYMKCGSVEAG 210
Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
R++FDEMPVK +++WN++I+G + G + L+++ +M+ G+ PD FTLV VL+SCA++
Sbjct: 211 RRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHL 270
Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
G ++G V ++ N + F+ NA + MYA+CG + +A VF M + + S+TAMI
Sbjct: 271 GAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMI 330
Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
+HG L +F +M + GI PD FV VLSACSH+GL ++G + F M R Y L
Sbjct: 331 GCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKL 390
Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
+P EHY C+VDL GRAG + EA++ I+SMP+ PD VWGALLGACKIH V++AE+
Sbjct: 391 EPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFA 450
Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFR 578
++ FEP G Y+LM+NIYS + ++R M+ER +K PG S VE G + F
Sbjct: 451 KVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFL 510
Query: 579 KGDKSHPKTLEIYKLLDEI 597
GD+SH +T E++++LDE+
Sbjct: 511 AGDRSHEQTEEVHRMLDEL 529
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 608 | ||||||
| 225463844 | 617 | PREDICTED: pentatricopeptide repeat-cont | 0.935 | 0.922 | 0.619 | 0.0 | |
| 255556729 | 615 | pentatricopeptide repeat-containing prot | 0.917 | 0.907 | 0.604 | 0.0 | |
| 296088765 | 595 | unnamed protein product [Vitis vinifera] | 0.875 | 0.894 | 0.577 | 0.0 | |
| 449437962 | 591 | PREDICTED: pentatricopeptide repeat-cont | 0.917 | 0.944 | 0.557 | 1e-177 | |
| 225445386 | 711 | PREDICTED: pentatricopeptide repeat-cont | 0.930 | 0.796 | 0.431 | 1e-134 | |
| 225442904 | 724 | PREDICTED: putative pentatricopeptide re | 0.950 | 0.798 | 0.389 | 1e-134 | |
| 224114351 | 660 | predicted protein [Populus trichocarpa] | 0.921 | 0.848 | 0.426 | 1e-133 | |
| 449464596 | 734 | PREDICTED: pentatricopeptide repeat-cont | 0.953 | 0.790 | 0.394 | 1e-133 | |
| 225456890 | 698 | PREDICTED: pentatricopeptide repeat-cont | 0.953 | 0.830 | 0.399 | 1e-132 | |
| 449436619 | 723 | PREDICTED: putative pentatricopeptide re | 0.934 | 0.785 | 0.386 | 1e-131 |
| >gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/584 (61%), Positives = 450/584 (77%), Gaps = 15/584 (2%)
Query: 31 LESSKSVGQLKQFHAFIIKT-GSPQHQTQI------LYDKIISLSRGNEIENLS-LQNPQ 82
L++ KS+ LKQ HA IIKT SP Q I L + + + + L+ L+ P
Sbjct: 29 LQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPN 88
Query: 83 VYLYNFIIQCL--SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
+ LYN II+ L SN + +E + +Y++ML KG++P+ YT+P+VLKAC +S+++R G++VH
Sbjct: 89 LPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVH 148
Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
++K L S+VYV NTLMR+YAVC +I++ K+F QRDLVSWTT+IQ YVKM
Sbjct: 149 GQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFD----TSPQRDLVSWTTMIQGYVKM 204
Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
+ E + FF+MC NL+ DGM LVIVLS+C++LGDL LG K+HRYI N N++ DVF
Sbjct: 205 GFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNS-NVNLDVF 263
Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
+ NAL+DMYLKCG+ ARKVF EMPVKNVVSWNSMI+GL +GQFKE+L +FR+MQ LG
Sbjct: 264 VGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG 323
Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
+KPDD TLV VLNSCAN+G LELGKWVH YLD+N I DGFIGNALVDMYAKCG IDQA
Sbjct: 324 VKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQAC 383
Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
VF++M +DVYSYTAMIVGLA+HG+ KALD+FSEM ++GIEPDEVTFVGVL+ACSH G
Sbjct: 384 WVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVG 443
Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
LVEEG K+F DMS +YNL+PQ EHYGCMVDL GRAGLI EA + I++MP+ PDAFV GAL
Sbjct: 444 LVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGAL 503
Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
LGACKIH KVEL E VM+ + + EP DGAY+LM+NIYSS NRW++ALKLRK MKER ++
Sbjct: 504 LGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLE 563
Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
KTPGCS +E+ G +EF+KGDKSHPK EIYKLLDEIM KN+
Sbjct: 564 KTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKNN 607
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/589 (60%), Positives = 434/589 (73%), Gaps = 31/589 (5%)
Query: 25 LHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQHQTQI------------------LYDK 63
H+ P+L S KSV ++KQ HA IIK + + T + L D
Sbjct: 24 FHEFPQLLLLSSCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADS 83
Query: 64 IISLSRGNEIENLSLQNPQVYLYNFIIQCLSNANPL--EAIALYREMLIKGLLPNTYTLP 121
I +L + + N QNP VY++N IIQ LS +N +LYR+ML+ GL P+TYTLP
Sbjct: 84 IQNLWYASSLANFCHQNP-VYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLP 142
Query: 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181
Y+LKAC QS + Q+HA+S+KT L SN++V NTLMR YAV G I+AV K+F Q P
Sbjct: 143 YLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVF--DQGP 200
Query: 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241
DL+SWTTLIQAY KM YP+EAI +FF M N D M LV+VLSACS+LGD +LG
Sbjct: 201 H--WDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDFTLG 255
Query: 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301
KI Y+ + F++ DVF+ NAL+DMYLKCG AR++F MPVKN+VSWNSMI+GL
Sbjct: 256 KKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLA 315
Query: 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361
H+G FKEAL +FRRMQ +GLKPD TLV VLNSCAN+G LELGKWVH+Y+DKNH+ DG+
Sbjct: 316 HQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGY 375
Query: 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421
+ NALVDMYAKCG IDQAF VF++MKC+DVYSYTAMIVG A+HGKA +AL IFSEM ++G
Sbjct: 376 VANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMG 435
Query: 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481
+ PD VT VGVLSACSHAGL+EEG +HF DMSR+Y+LQPQTEHYGCMVDL GRAGLI EA
Sbjct: 436 VRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEA 495
Query: 482 LDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541
MP+VPDA VWG+LLGACKIHAKVEL E V++ L+ EPE DGAYILM+NIYSS
Sbjct: 496 EAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSA 555
Query: 542 NRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
NRW++ALK RK MK+ +KKTPGCS +EV G +EFRKG+KSHPK+ E+
Sbjct: 556 NRWRDALKWRKAMKQNNIKKTPGCSSIEVDGMVHEFRKGEKSHPKSREM 604
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/584 (57%), Positives = 421/584 (72%), Gaps = 52/584 (8%)
Query: 31 LESSKSVGQLKQFHAFIIKT-GSPQHQTQI------LYDKIISLSRGNEIENLS-LQNPQ 82
L++ KS+ LKQ HA IIKT SP Q I L + + + + L+ L+ P
Sbjct: 44 LQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPN 103
Query: 83 VYLYNFIIQCL--SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
+ LYN II+ L SN + +E + +Y++ML KG++P+ YT+P+VLKAC +S+++R G++VH
Sbjct: 104 LPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVH 163
Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
++K L S+VYV NTLMR+YAVC +I++ K+F QRDLVSWTT+IQ YVKM
Sbjct: 164 GQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFD----TSPQRDLVSWTTMIQGYVKM 219
Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
+ E + G+ I R + N++ DVF
Sbjct: 220 GFAREGV---------------------------------GLYIIR-----NSNVNLDVF 241
Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
+ NAL+DMYLKCG+ ARKVF EMPVKNVVSWNSMI+GL +GQFKE+L +FR+MQ LG
Sbjct: 242 VGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG 301
Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
+KPDD TLV VLNSCAN+G LELGKWVH YLD+N I DGFIGNALVDMYAKCG IDQA
Sbjct: 302 VKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQAC 361
Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
VF++M +DVYSYTAMIVGLA+HG+ KALD+FSEM ++GIEPDEVTFVGVL+ACSH G
Sbjct: 362 WVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVG 421
Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
LVEEG K+F DMS +YNL+PQ EHYGCMVDL GRAGLI EA + I++MP+ PDAFV GAL
Sbjct: 422 LVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGAL 481
Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560
LGACKIH KVEL E VM+ + + EP DGAY+LM+NIYSS NRW++ALKLRK MKER ++
Sbjct: 482 LGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLE 541
Query: 561 KTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
KTPGCS +E+ G +EF+KGDKSHPK EIYKLLDEIM KN+
Sbjct: 542 KTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKNN 585
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 324/581 (55%), Positives = 412/581 (70%), Gaps = 23/581 (3%)
Query: 21 QLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNE-------I 73
QL L S L S KS+ LKQ H IKT P L K+I LS + I
Sbjct: 5 QLHLFSHS--LNSCKSISHLKQIHGVAIKT--PSLSLPNLIPKLIFLSSSSSSSPDLFYI 60
Query: 74 ENLSLQNPQ-----VYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKAC 127
++ L + + L N II+ +S N+ L + EML+ GL P+ +T+P VLKA
Sbjct: 61 RSILLTHSHDAQFCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKAL 120
Query: 128 WQSQSLRVGQQVHAYSMKTALLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD 186
Q +R GQQ+HA S+KT ++ NVYV NTLMRLY+VCG I V K+F H RD
Sbjct: 121 ALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPH----RD 176
Query: 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHR 246
LVSWTTLIQA+ K + A+ +F +MC LR DG LV+VLSACS LGDL+LG K+H
Sbjct: 177 LVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHS 236
Query: 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQF 306
YI ++ ++ DVF+ NAL+DMYLKC ++ SA KVFDEMPVKNVV+WN+MI+GL ++G++
Sbjct: 237 YIR-HYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRY 295
Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
+EALD FR MQ G+KPD+ TLV VLNSCAN+G LE+GKWVH Y+ +NHI D F+GNAL
Sbjct: 296 REALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNAL 355
Query: 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426
+DMYAKCG ID+AF VF SMK RDVYSYTAMI GLA+HG+A A +FSEM +VGIEP+E
Sbjct: 356 LDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNE 415
Query: 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIK 486
VTF+G+L ACSH GLV EG K+F MS Y L+PQ EHYGCM+DL GRAGL++EA ++I
Sbjct: 416 VTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIH 475
Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546
M + PD F GALLGAC+IH V++ E VM+ L +P+ +G YILMTN+YSS +RWK+
Sbjct: 476 KMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKD 535
Query: 547 ALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKT 587
ALK+RK MK +K++KTPGCSL+EV G +EFRKGDKSHP++
Sbjct: 536 ALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSHPRS 576
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 253/586 (43%), Positives = 366/586 (62%), Gaps = 20/586 (3%)
Query: 31 LESSKSVGQLKQFHAFIIKTG---SPQHQTQI-----LYDKIISLSRGNEIENLSLQNPQ 82
LE ++ QLKQ HA +++T P ++I L+D SL + N + NP
Sbjct: 47 LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSG-SLPYARLVFN-QIPNPT 104
Query: 83 VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
+ N II+ +N N P +AI Y+ M+++GL P+ +T P + K+C L G+Q+H
Sbjct: 105 TFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHC 161
Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
+S K S+ Y+ NTLM +Y+ CG + + K+F + +VSW T+I AY + D
Sbjct: 162 HSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFD----KMVNKSVVSWATMIGAYAQWD 217
Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
P EAI F M A+++P+ + LV VL+AC++ DL ++H+YI + +
Sbjct: 218 LPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFH--TVL 275
Query: 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
+AL+D+Y KCG P AR +F++MP KN+ WN MI G ++EAL +F MQ G+
Sbjct: 276 TSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGV 335
Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
K D T+ +L +C ++G LELGKW+H Y++K I D +G ALVDMYAKCG I+ A
Sbjct: 336 KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMR 395
Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
VF+ M +DV ++TA+IVGLA+ G+ KAL++F EM ++PD +TFVGVL+ACSHAGL
Sbjct: 396 VFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGL 455
Query: 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501
V EG +F M Y +QP EHYGCMVD+ GRAG I EA DLI++MP+ PD FV LL
Sbjct: 456 VNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLL 515
Query: 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
AC+IH + +AE + L+ +P+ G Y+L++NIYSS W+ A K+R+ M ER +KK
Sbjct: 516 SACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKK 575
Query: 562 TPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
PGCS +EV G +EF KGD SHP++ EIY+ LD++M + K+ GY+
Sbjct: 576 PPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYV 621
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 245/629 (38%), Positives = 387/629 (61%), Gaps = 51/629 (8%)
Query: 21 QLSLLHQSPRL---ESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL- 76
L L Q+P L ++ KS+ QLKQ H+ I TG + I+ +II+ +E+ ++
Sbjct: 13 HLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNP--IVPAQIIAFCCKHELGDME 70
Query: 77 -------SLQNPQVYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACW 128
++ P +++N +I+ S P A+++Y EML +G++P+ YT P++LK
Sbjct: 71 YARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFT 130
Query: 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLV 188
+ +++ G+++H + +K SNV+V N L+ LY++ G + +F ++ D+V
Sbjct: 131 RDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFD----RSSKGDVV 186
Query: 189 SWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYI 248
+W +I Y + E++ F +M + + P + LV VLSACSKL DL++G ++HRY+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV 246
Query: 249 TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ--- 305
D + P + NALIDMY CG++ +A +FD M ++V+SW +++ G T+ GQ
Sbjct: 247 KD--LKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGL 304
Query: 306 ----------------------------FKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
FKE L +FR MQ +KPD+FT+V +L +CA+
Sbjct: 305 ARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAH 364
Query: 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM 397
+G LELG+W+ Y+DKN I D F+GNAL+DMY CG +++A +F +M RD S+TA+
Sbjct: 365 LGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAV 424
Query: 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457
I GLAI+G +ALD+FS+M + I PDEVT +GVL AC+H+G+V++G K F M+ +
Sbjct: 425 IFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHG 484
Query: 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVM 517
++P HYGCMVDL GRAG ++EA ++IK+MP+ P++ VWG+LLGAC++H E+AE+
Sbjct: 485 IEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAA 544
Query: 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577
+ ++ EPE Y+L+ NIY++ NRW++ ++RK M +R +KKTPGCSL+E+ G +EF
Sbjct: 545 QQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEF 604
Query: 578 RKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
GD+ HP++ EIY LDE+ K GY
Sbjct: 605 VAGDQVHPQSKEIYSKLDEMSVDLKFAGY 633
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa] gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/581 (42%), Positives = 364/581 (62%), Gaps = 21/581 (3%)
Query: 37 VGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIENLSL-----QNPQVYLYNF 88
+ QLKQ HA +++TG P ++I+ SL ++ L NP Y N
Sbjct: 1 MSQLKQIHAQMLRTGLFFDPFTASKIV--AFCSLQESGSLQYARLVFSQIPNPTSYTCNS 58
Query: 89 IIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA 147
II+ ++ N EA+ Y+EM+++GL+P+ YT P + K+C S G+Q+H +S K
Sbjct: 59 IIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLG 115
Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
S+ Y NTLM +Y+ CG + + K+F + +VSW T+I + + D P EA+
Sbjct: 116 FASDTYAQNTLMNMYSNCGCLVSARKVFD----KMEDKTVVSWATMIGVHAQWDQPNEAV 171
Query: 208 LSFFDMCQA-NLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALI 266
F M ++ N++P+ + LV VL+AC++ DL++ +IH YI ++ F V ++ L+
Sbjct: 172 RLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFG--RHVVLNTVLM 229
Query: 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326
D+Y KCG + AR +FD+ KN+ SWN MI G ++EAL +FR MQ G+K D
Sbjct: 230 DVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKV 289
Query: 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386
T+ +L +C ++G LELGKW+H Y+ K I+ D +G ALVDMYAKCG I+ A VF M
Sbjct: 290 TMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEM 349
Query: 387 KCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446
+DV ++TA+I+GLA+ G+A AL F EM G++PD +TFVGVL+ACSHAG V+EG
Sbjct: 350 PEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGI 409
Query: 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506
HF MS Y +QP EHYG +VD+ GRAG I EA +LIKSMP+ PD FV G LLGAC+I
Sbjct: 410 SHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRI 469
Query: 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCS 566
H +E AE + L+ +P G Y+L++NIY S +W+EA + R+ M ER ++K PGCS
Sbjct: 470 HGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCS 529
Query: 567 LVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
+EV+G +EF KGD SH ++ EI ++L++++ + KN GY+
Sbjct: 530 QIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYV 570
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/623 (39%), Positives = 385/623 (61%), Gaps = 43/623 (6%)
Query: 24 LLHQSPRLE---SSKSVGQLKQFHAFIIKTGSPQHQTQILYDKII---SLSRGNEIENL- 76
+L + P L+ +S+ KQ HA IIKTG H T K+I ++SR +I
Sbjct: 26 VLQEHPSLKLLSKCQSIRTFKQIHAHIIKTG--LHNTLFALSKLIEFSAVSRSGDISYAI 83
Query: 77 ----SLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
S++ P ++++N +I+ LS + +P A+ + M+ G+ PN+YT P++LK+C +
Sbjct: 84 SLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLA 143
Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLF---HFRQ--------- 179
S G+Q+HA+ +K +S+V++ +L+ +YA G + +F +FR
Sbjct: 144 SAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIA 203
Query: 180 ---------------HPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI 224
+D+VSW +I Y +M EA+L F DM +AN+ P+
Sbjct: 204 GYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNEST 263
Query: 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284
+V VLSAC++ L LG + +I D L ++ + NALIDMY KCG++ +AR++FD+
Sbjct: 264 IVSVLSACAQSNALDLGNSMRSWIEDR--GLCSNLKLVNALIDMYSKCGDLQTARELFDD 321
Query: 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344
M ++V+SWN MI G TH +KEAL +FR M G++P + T + +L SCA++G ++LG
Sbjct: 322 MLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG 381
Query: 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH 404
KW+H Y++KN + + +L+D+YAKCG I A VF MK + + S+ AMI GLA+H
Sbjct: 382 KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMH 441
Query: 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464
G+A KA ++FS+MS GIEP+E+TFVG+LSAC HAGLV+ G + F M + Y + P+++H
Sbjct: 442 GQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQH 501
Query: 465 YGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524
YGCM+DL GRAGL EA L+++M + PD +WG+LLGAC+ H +VEL E+V E L E
Sbjct: 502 YGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELE 561
Query: 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSH 584
P+ GAY+L++NIY+ +W + ++R ++ +R +KK PGC+ +EV +EF GDK H
Sbjct: 562 PDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVH 621
Query: 585 PKTLEIYKLLDEIMHQSKNHGYI 607
P++ +IY++L+E+ Q K G++
Sbjct: 622 PQSEDIYRMLEEVDEQLKVFGFV 644
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/596 (39%), Positives = 373/596 (62%), Gaps = 16/596 (2%)
Query: 22 LSLLHQSPR---LESSKSVGQLKQFHAFIIKTG---SPQHQTQILYDKIISLSRGNEIEN 75
+SL ++P+ LE K++ L + HA +IKT P+ +L I L +
Sbjct: 19 ISLFPENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAV 78
Query: 76 ---LSLQNPQVYLYNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQ 131
+ P YN +I+ + +P EAI L++EM + P+ +T P +LK C + Q
Sbjct: 79 SIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQ 138
Query: 132 SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191
+L G+Q+HA MK S+ +V NTL+ +YA CG ++ ++F ++R++ +W
Sbjct: 139 ALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFD----EMSERNVRTWN 194
Query: 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN 251
++ Y K E + F +M + ++R D + LV VL+AC +L DL LG I+RY+ +
Sbjct: 195 SMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEK 254
Query: 252 HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALD 311
+P + +L+DMY KCG + +AR++FD+M ++VV+W++MI+G + + +EALD
Sbjct: 255 GLKGNPTLI--TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALD 312
Query: 312 IFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371
+F MQ + P++ T+V +L+SCA +G LE GKWVH ++ K + +G AL+D YA
Sbjct: 313 LFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYA 372
Query: 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431
KCG ++ + VF M ++V S+T +I GLA +G+ KAL+ F M + +EP++VTF+G
Sbjct: 373 KCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIG 432
Query: 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
VLSACSHAGLV+EG F+ MSR + ++P+ EHYGCMVD+ GRAGLI EA IK+MP+
Sbjct: 433 VLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQ 492
Query: 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551
P+A +W LL +CK+H VE+ E ++ L+ EP G YIL++NIY+S RW++ALK+R
Sbjct: 493 PNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVR 552
Query: 552 KKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
+MKE+ +KKTPGCSL+E+ G +EF D H ++ EIY ++++M Q K+ GY+
Sbjct: 553 GEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYV 608
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 238/616 (38%), Positives = 376/616 (61%), Gaps = 48/616 (7%)
Query: 31 LESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL--------SLQNPQ 82
LE+ +S+ QL+Q H IK G + +L +++++ +E + + P
Sbjct: 25 LETCESMDQLQQVHCQAIKKG--LNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPN 82
Query: 83 VYLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141
++++N +I+ S + P ++LY EML +G+ P+ YT P++ K + +L G+Q+H
Sbjct: 83 LFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHG 142
Query: 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201
+ +K L NV+V L+++Y +CG + +F P+A D+++W +I AY K+
Sbjct: 143 HVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDV--CPKA--DVITWNMIISAYNKVG 198
Query: 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFI 261
E+ F M + P + LV+VLSACSKL DL G K+H Y+ + + ++ +
Sbjct: 199 KFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN--CKVESNLVL 256
Query: 262 HNALIDMYLKCGNIPSA-------------------------------RKVFDEMPVKNV 290
NA+IDMY CG + SA R FD+MP K+
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316
Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTY 350
VSW +MI G +FKEAL++FR MQ +KPD+FT+V VL +CA++G LELG+W+ TY
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 376
Query: 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKA 410
+D+N I D F+ NAL+DMY KCG +D+A +FR M RD +++TAMIVGLA++G KA
Sbjct: 377 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 436
Query: 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470
LD+FS M + I PDE+T++GVLSAC+H GLV++G K+FL M+ + ++P HYGC+VD
Sbjct: 437 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 496
Query: 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530
L RAG ++EA ++I++MP+ ++ VWGALL C+++ + ++AE+V++ ++ EP+
Sbjct: 497 LLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV 556
Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEI 590
Y+L+ NIY++ RW + +LR+ M ++ +KKTPGCSL+E+ G +EF GD+SHP+T I
Sbjct: 557 YVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNI 616
Query: 591 YKLLDEIMHQSKNHGY 606
LD++ K GY
Sbjct: 617 DAKLDKMTQDLKLAGY 632
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 608 | ||||||
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.850 | 0.697 | 0.373 | 5e-99 | |
| TAIR|locus:2084963 | 661 | AT3G04750 "AT3G04750" [Arabido | 0.557 | 0.512 | 0.376 | 1.1e-97 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.927 | 0.823 | 0.362 | 5.9e-96 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.574 | 0.540 | 0.421 | 2.3e-95 | |
| TAIR|locus:2080727 | 623 | MEF10 "mitochondrial RNA editi | 0.810 | 0.791 | 0.382 | 1.3e-93 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.939 | 0.655 | 0.335 | 1e-91 | |
| TAIR|locus:2094812 | 600 | AT3G29230 "AT3G29230" [Arabido | 0.947 | 0.96 | 0.344 | 1.3e-91 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.967 | 0.726 | 0.342 | 1.5e-90 | |
| TAIR|locus:2121055 | 559 | AT4G38010 "AT4G38010" [Arabido | 0.787 | 0.856 | 0.388 | 5.1e-90 | |
| TAIR|locus:2011892 | 596 | AT1G50270 "AT1G50270" [Arabido | 0.845 | 0.862 | 0.364 | 3.6e-89 |
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 198/530 (37%), Positives = 315/530 (59%)
Query: 81 PQVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV 139
P Y + F+++ C + E ++ +L G + Y ++ Q+ L +V
Sbjct: 132 PNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKV 191
Query: 140 HAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199
S ++S + L++ YA G I+ KLF + P +D+VSW +I Y +
Sbjct: 192 FDKSPHRDVVS----YTALIKGYASRGYIENAQKLFD--EIPV--KDVVSWNAMISGYAE 243
Query: 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV 259
EA+ F DM + N+RPD +V V+SAC++ G + LG ++H +I D+ F ++
Sbjct: 244 TGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFG--SNL 301
Query: 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL 319
I NALID+Y KCG + +A +F+ +P K+V+SWN++I G TH +KEAL +F+ M
Sbjct: 302 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 361
Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN--HINTDGFIGNALVDMYAKCGRID 377
G P+D T++ +L +CA++G +++G+W+H Y+DK + + +L+DMYAKCG I+
Sbjct: 362 GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 421
Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
A VF S+ + + S+ AMI G A+HG+A + D+FS M ++GI+PD++TFVG+LSACS
Sbjct: 422 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481
Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
H+G+++ G F M++ Y + P+ EHYGCM+DL G +GL +EA ++I M + PD +W
Sbjct: 482 HSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIW 541
Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWXXXXXXXXXXXXX 557
+LL ACK+H VEL E ENL++ EPE G+Y+L++NIY+S RW
Sbjct: 542 CSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDK 601
Query: 558 XXXXTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
PGCS +E+ +EF GDK HP+ EIY +L+E+ + G++
Sbjct: 602 GMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651
|
|
| TAIR|locus:2084963 AT3G04750 "AT3G04750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 656 (236.0 bits), Expect = 1.1e-97, Sum P(2) = 1.1e-97
Identities = 130/345 (37%), Positives = 211/345 (61%)
Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL-DIFRRMQGLG- 320
N ++ +++ G++ +A+ VFD+MP +++VSWNS++ G + +G + + ++F M +
Sbjct: 304 NTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEK 363
Query: 321 LKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380
+KPD T+V +++ AN G L G+WVH + + + D F+ +AL+DMY KCG I++AF
Sbjct: 364 VKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAF 423
Query: 381 GVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440
VF++ +DV +T+MI GLA HG +AL +F M + G+ P+ VT + VL+ACSH+G
Sbjct: 424 MVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSG 483
Query: 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI-KSMPLVPDAFVWGA 499
LVEEG F M + P+TEHYG +VDL RAG + EA D++ K MP+ P +WG+
Sbjct: 484 LVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGS 543
Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWXXXXXXXXXXXXXXX 559
+L AC+ +E AE+ + L++ EPE +G Y+L++NIY++ RW
Sbjct: 544 ILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGV 603
Query: 560 XXTPG-CSLVEVYGEFYEFRKGDK-SHPKTLEIYKLLDEIMHQSK 602
T G S+V V G + F +K +HP+ EI ++L + ++ K
Sbjct: 604 KKTAGYSSVVGVEG-LHRFVAAEKQNHPRWTEIKRILQHLYNEMK 647
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 210/579 (36%), Positives = 324/579 (55%)
Query: 36 SVGQLKQFHAFIIKTGSPQHQTQI--LYDKIISLSRGNEIENLSL---QNPQVYLYNFII 90
+V LKQ H +I H T + L K R + L Q P ++LYN +I
Sbjct: 25 TVNHLKQIHVSLINHHL-HHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLI 83
Query: 91 QCLSNANPL--EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL 148
N N L E + L+ + GL + +T P VLKAC ++ S ++G +H+ +K
Sbjct: 84 NGFVN-NHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGF 142
Query: 149 LSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208
+V +L+ +Y+ G + HKLF + P R +V+WT L Y EAI
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFD--EIPD--RSVVTWTALFSGYTTSGRHREAID 198
Query: 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268
F M + ++PD +V VLSAC +GDL G I +Y+ + + + F+ L+++
Sbjct: 199 LFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE--MEMQKNSFVRTTLVNL 256
Query: 269 YLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328
Y KCG + AR VFD M K++V+W++MI G KE +++F +M LKPD F++
Sbjct: 257 YAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSI 316
Query: 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC 388
V L+SCA++G L+LG+W + +D++ T+ F+ NAL+DMYAKCG + + F VF+ MK
Sbjct: 317 VGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKE 376
Query: 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448
+D+ A I GLA +G + +F + ++GI PD TF+G+L C HAGL+++G +
Sbjct: 377 KDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRF 436
Query: 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHA 508
F +S VY L+ EHYGCMVDL+GRAG++ +A LI MP+ P+A VWGALL C++
Sbjct: 437 FNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVK 496
Query: 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWXXXXXXXXXXXXXXXXXTPGCSLV 568
+LAE V++ L+ EP G Y+ ++NIYS RW PG S +
Sbjct: 497 DTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWI 556
Query: 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
E+ G+ +EF DKSHP + +IY L+++ ++ + G++
Sbjct: 557 ELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFV 595
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
Identities = 147/349 (42%), Positives = 225/349 (64%)
Query: 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
++ + N +ID Y++ G+ +AR +FD+M ++VVSWN+MI+G + G FK+A+++FR M+
Sbjct: 207 EIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK 266
Query: 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377
++P+ TLV VL + + +G LELG+W+H Y + + I D +G+AL+DMY+KCG I+
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIE 326
Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
+A VF + +V +++AMI G AIHG+A A+D F +M Q G+ P +V ++ +L+ACS
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACS 386
Query: 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
H GLVEEG ++F M V L+P+ EHYGCMVDL GR+GL+ EA + I +MP+ PD +W
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 446
Query: 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWXXXXXXXXXXXXX 557
ALLGAC++ VE+ + V L+ P GAY+ ++N+Y+S+ W
Sbjct: 447 KALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEK 506
Query: 558 XXXXTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
PGCSL+++ G +EF D SHPK EI +L EI + + GY
Sbjct: 507 DIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGY 555
|
|
| TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 191/499 (38%), Positives = 291/499 (58%)
Query: 100 EAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV-GQQVHAYSMKTALLSNVYVFNTL 158
E+I+LYR ML G P+ ++ P++LK+C S SL V GQQ+H + K + +V L
Sbjct: 36 ESISLYRSMLRSGSSPDAFSFPFILKSC-ASLSLPVSGQQLHCHVTKGGCETEPFVLTAL 94
Query: 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218
+ +Y CGL+ K+F ++PQ+ + V + LI Y T+A F M + +
Sbjct: 95 ISMYCKCGLVADARKVFE--ENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGV 152
Query: 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
D + ++ ++ C+ L LG +H L +V + N+ I MY+KCG++ +
Sbjct: 153 SVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKG--GLDSEVAVLNSFITMYMKCGSVEAG 210
Query: 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338
R++FDEMPVK +++WN++I+G + G + L+++ +M+ G+ PD FTLV VL+SCA++
Sbjct: 211 RRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHL 270
Query: 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMI 398
G ++G V ++ N + F+ NA + MYA+CG + +A VF M + + S+TAMI
Sbjct: 271 GAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMI 330
Query: 399 VGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458
+HG L +F +M + GI PD FV VLSACSH+GL ++G + F M R Y L
Sbjct: 331 GCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKL 390
Query: 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518
+P EHY C+VDL GRAG + EA++ I+SMP+ PD VWGALLGACKIH V++AE+
Sbjct: 391 EPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFA 450
Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWXXXXXXXXXXXXXXXXXTPGCSLVEVYGEFYEFR 578
++ FEP G Y+LM+NIYS PG S VE G + F
Sbjct: 451 KVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFL 510
Query: 579 KGDKSHPKTLEIYKLLDEI 597
GD+SH +T E++++LDE+
Sbjct: 511 AGDRSHEQTEEVHRMLDEL 529
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 197/587 (33%), Positives = 325/587 (55%)
Query: 28 SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNE-IENL-----SLQNP 81
S S +SV +Q H FI+K+G + + + + +++ N+ +++ +
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERNS--VGNSLVAFYLKNQRVDSARKVFDEMTER 259
Query: 82 QVYLYNFIIQ-CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVH 140
V +N II +SN + ++++ +ML+ G+ + T+ V C S+ + +G+ VH
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319
Query: 141 AYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200
+ +K NTL+ +Y+ CG + + +F R+ + R +VS+T++I Y +
Sbjct: 320 SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF--RE--MSDRSVVSYTSMIAGYARE 375
Query: 201 DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVF 260
EA+ F +M + + PD + VL+ C++ L G ++H +I +N +L D+F
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN--DLGFDIF 433
Query: 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM-QGL 319
+ NAL+DMY KCG++ A VF EM VK+++SWN++I G + EAL +F + +
Sbjct: 434 VSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 493
Query: 320 GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
PD+ T+ CVL +CA++ + G+ +H Y+ +N +D + N+LVDMYAKCG + A
Sbjct: 494 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 553
Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439
+F + +D+ S+T MI G +HG +A+ +F++M Q GIE DE++FV +L ACSH+
Sbjct: 554 HMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHS 613
Query: 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499
GLV+EG + F M ++P EHY C+VD+ R G + +A I++MP+ PDA +WGA
Sbjct: 614 GLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGA 673
Query: 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWXXXXXXXXXXXXXXX 559
LL C+IH V+LAE V E + EPE G Y+LM NIY+ +W
Sbjct: 674 LLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 733
Query: 560 XXTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
PGCS +E+ G F GD S+P+T I L ++ + GY
Sbjct: 734 RKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGY 780
|
|
| TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 210/610 (34%), Positives = 348/610 (57%)
Query: 1 MASPLTVASGSRYNDINTFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL 60
M S L V + S + F++ L P+ + + Q+KQ HA II+ H+ +
Sbjct: 1 MTSSLPVRAPSWVSSRRIFEER--LQDLPKCAN---LNQVKQLHAQIIRRNL--HEDLHI 53
Query: 61 YDKIIS-LSRGNEIENLSL------QNPQVYLYNFIIQC-LSNANPLEAIALYREMLIKG 112
K+IS LS + NL++ Q P V+L N +I+ N+ P +A ++ EM G
Sbjct: 54 APKLISALSLCRQT-NLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFG 112
Query: 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCG-L-IKA 170
L + +T P++LKAC L V + +H + K L S++YV N L+ Y+ CG L ++
Sbjct: 113 LFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRD 172
Query: 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230
KLF ++RD VSW +++ VK +A F +M Q +L + +L
Sbjct: 173 AMKLFE----KMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDL----ISWNTMLD 224
Query: 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--K 288
++ ++S ++ + + + +S + ++ Y K G++ AR +FD+MP+ K
Sbjct: 225 GYARCREMSKAFELFEKMPERN-TVS-----WSTMVMGYSKAGDMEMARVMFDKMPLPAK 278
Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348
NVV+W +IAG +G KEA + +M GLK D ++ +L +C G L LG +H
Sbjct: 279 NVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIH 338
Query: 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAW 408
+ L ++++ ++ ++ NAL+DMYAKCG + +AF VF + +D+ S+ M+ GL +HG
Sbjct: 339 SILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGK 398
Query: 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468
+A+++FS M + GI PD+VTF+ VL +C+HAGL++EG +F M +VY+L PQ EHYGC+
Sbjct: 399 EAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCL 458
Query: 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528
VDL GR G ++EA+ ++++MP+ P+ +WGALLGAC++H +V++A+ V++NLV+ +P
Sbjct: 459 VDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDP 518
Query: 529 GAYILMTNIYSSKNRWXXXXXXXXXXXXXXXXXTPGCSLVEVYGEFYEFRKGDKSHPKTL 588
G Y L++NIY++ W G S VE+ +EF DKSHPK+
Sbjct: 519 GNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSD 578
Query: 589 EIYKLLDEIM 598
+IY++L ++
Sbjct: 579 QIYQMLGSLI 588
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 206/602 (34%), Positives = 324/602 (53%)
Query: 12 RYNDIN-TFQQLSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQI--LYDKIISLS 68
RY+D+ + L + E+ VG K+ H ++K+G + L +
Sbjct: 127 RYDDVEPVVYNFTYLLKVCGDEAELRVG--KEIHGLLVKSGFSLDLFAMTGLENMYAKCR 184
Query: 69 RGNEIENLSLQNPQVYL--YNFIIQCLS-NANPLEAIALYREMLIKGLLPNTYTLPYVLK 125
+ NE + + P+ L +N I+ S N A+ + + M + L P+ T+ VL
Sbjct: 185 QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLP 244
Query: 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR 185
A + + VG+++H Y+M++ S V + L+ +YA CG ++ +LF +R
Sbjct: 245 AVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFD----GMLER 300
Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIH 245
++VSW ++I AYV+ + P EA+L F M ++P + ++ L AC+ LGDL G IH
Sbjct: 301 NVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH 360
Query: 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305
+ + L +V + N+LI MY KC + +A +F ++ + +VSWN+MI G G+
Sbjct: 361 KLSVE--LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGR 418
Query: 306 FKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA 365
+AL+ F +M+ +KPD FT V V+ + A + KW+H + ++ ++ + F+ A
Sbjct: 419 PIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTA 478
Query: 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
LVDMYAKCG I A +F M R V ++ AMI G HG AL++F EM + I+P+
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPN 538
Query: 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI 485
VTF+ V+SACSH+GLVE G K F M Y+++ +HYG MVDL GRAG + EA D I
Sbjct: 539 GVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFI 598
Query: 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWX 545
MP+ P V+GA+LGAC+IH V AE E L P+ G ++L+ NIY + + W
Sbjct: 599 MQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWE 658
Query: 546 XXXXXXXXXXXXXXXXTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHG 605
TPGCS+VE+ E + F G +HP + +IY L++++ K G
Sbjct: 659 KVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAG 718
Query: 606 YI 607
Y+
Sbjct: 719 YV 720
|
|
| TAIR|locus:2121055 AT4G38010 "AT4G38010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 191/492 (38%), Positives = 290/492 (58%)
Query: 84 YLYNFIIQCLSNAN-PLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
+ YN ++ + + P I Y+ + G P+ +T P V KAC + +R G+Q+H
Sbjct: 72 FSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGI 131
Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
K ++YV N+L+ Y VCG + K+F + P RD+VSWT +I + +
Sbjct: 132 VTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFG--EMPV--RDVVSWTGIITGFTRTGL 187
Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
EA+ +F M ++ P+ V VL + ++G LSLG IH I +S +
Sbjct: 188 YKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLET--G 242
Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGL 321
NALIDMY+KC + A +VF E+ K+ VSWNSMI+GL H + KEA+D+F MQ G+
Sbjct: 243 NALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGI 302
Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
KPD L VL++CA++G ++ G+WVH Y+ I D IG A+VDMYAKCG I+ A
Sbjct: 303 KPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALE 362
Query: 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441
+F ++ ++V+++ A++ GLAIHG ++L F EM ++G +P+ VTF+ L+AC H GL
Sbjct: 363 IFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGL 422
Query: 442 VEEGCKHFLDM-SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGAL 500
V+EG ++F M SR YNL P+ EHYGCM+DL RAGL+ EAL+L+K+MP+ PD + GA+
Sbjct: 423 VDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAI 482
Query: 501 LGACKIHAKV-ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWXXXXXXXXXXXXXXX 559
L ACK + EL + ++++ + E E G Y+L++NI+++ RW
Sbjct: 483 LSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGI 542
Query: 560 XXTPGCSLVEVY 571
PG S +E +
Sbjct: 543 SKVPGSSYIEKF 554
|
|
| TAIR|locus:2011892 AT1G50270 "AT1G50270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 191/524 (36%), Positives = 294/524 (56%)
Query: 78 LQNPQVYLYNFIIQCLSNANPLE---AIALYREMLIKGLLPNTYTLPYVLKACWQSQSLR 134
LQ + L++ +I S L + YR M G++P+ +T P +LKA ++ +
Sbjct: 62 LQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSN 121
Query: 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194
Q HA+ +K L S+ +V N+L+ Y+ GL +LF + +D+V+WT +I
Sbjct: 122 PFQ-FHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAE----DKDVVTWTAMI 176
Query: 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN 254
+V+ +EA++ F +M + + + M +V VL A K+ D+ G +H +
Sbjct: 177 DGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETG-R 235
Query: 255 LSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314
+ DVFI ++L+DMY KC A+KVFDEMP +NVV+W ++IAG F + + +F
Sbjct: 236 VKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFE 295
Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
M + P++ TL VL++CA++G L G+ VH Y+ KN I + G L+D+Y KCG
Sbjct: 296 EMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCG 355
Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434
+++A VF + ++VY++TAMI G A HG A A D+F M + P+EVTF+ VLS
Sbjct: 356 CLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLS 415
Query: 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA 494
AC+H GLVEEG + FL M +N++P+ +HY CMVDLFGR GL+ EA LI+ MP+ P
Sbjct: 416 ACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTN 475
Query: 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWXXXXXXXXXX 554
VWGAL G+C +H EL + +++ +P G Y L+ N+YS W
Sbjct: 476 VVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQM 535
Query: 555 XXXXXXXTPGCSLVEVYGEFYEFRKGDKSHP-KTLEIYKLLDEI 597
+PG S +EV G+ EF D P ++ ++YK LD +
Sbjct: 536 KDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTV 579
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 608 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-136 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-113 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-60 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-46 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-39 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 418 bits (1075), Expect = e-136
Identities = 200/512 (39%), Positives = 301/512 (58%), Gaps = 8/512 (1%)
Query: 95 NANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
N LE + L+ M + P+ T+ V+ AC R+G+++H Y +KT +V V
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
N+L+++Y G K+F + +D VSWT +I Y K P +A+ ++ M
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
Q N+ PD + + VLSAC+ LGDL +G+K+H V + NALI+MY KC
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY--VVVANALIEMYSKCKC 439
Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
I A +VF +P K+V+SW S+IAGL + EAL FR+M L LKP+ TL+ L++
Sbjct: 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSA 498
Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
CA IG L GK +H ++ + I DGF+ NAL+D+Y +CGR++ A+ F S + +DV S+
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSW 557
Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
++ G HGK A+++F+ M + G+ PDEVTF+ +L ACS +G+V +G ++F M
Sbjct: 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
Y++ P +HY C+VDL GRAG + EA + I MP+ PD VWGALL AC+IH VEL E
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677
Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
+ +++ +P G YIL+ N+Y+ +W E ++RK M+E + PGCS VEV G+
Sbjct: 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737
Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606
+ F D+SHP+ EI +L+ + K G
Sbjct: 738 HAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 354 bits (909), Expect = e-113
Identities = 172/513 (33%), Positives = 276/513 (53%), Gaps = 15/513 (2%)
Query: 100 EAIALYREMLIKGLLPNTYTLPY-----VLKACWQSQSLRVGQQVHAYSMKTALLSNVYV 154
EA+ L+ + +TLP +++AC +S+R + V+ + + + Y+
Sbjct: 105 EALELFEILEAGC----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMC 214
N ++ ++ CG++ +LF +R+L SW T+I V EA F +M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFD----EMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274
+ + V++L A + LG G ++H + + D F+ ALIDMY KCG+
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK--TGVVGDTFVSCALIDMYSKCGD 274
Query: 275 IPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334
I AR VFD MP K V+WNSM+AG G +EAL ++ M+ G+ D FT ++
Sbjct: 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394
+ + LE K H L + D ALVD+Y+K GR++ A VF M +++ S+
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
Query: 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454
A+I G HG+ KA+++F M G+ P+ VTF+ VLSAC ++GL E+G + F MS
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAE 514
+ ++P+ HY CM++L GR GL+ EA +I+ P P +W ALL AC+IH +EL
Sbjct: 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514
Query: 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574
+ E L PE Y+++ N+Y+S R EA K+ + +K + + P C+ +EV +
Sbjct: 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQD 574
Query: 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607
+ F GD+ HP++ EIY+ LDE+M + +GY+
Sbjct: 575 HSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-60
Identities = 121/402 (30%), Positives = 206/402 (51%), Gaps = 19/402 (4%)
Query: 94 SNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVY 153
S+ +A+ L M + + + + C +++ G +V + ++ + V
Sbjct: 63 SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR 122
Query: 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213
+ N ++ ++ G + VH + F + P+ RDL SW L+ Y K Y EA+ + M
Sbjct: 123 LGNAMLSMFVRFGEL--VHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRM 178
Query: 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273
A +RPD VL C + DL+ G ++H ++ F L DV NALI MY+KCG
Sbjct: 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV--NALITMYVKCG 236
Query: 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLN 333
++ SAR VFD MP ++ +SWN+MI+G G+ E L++F M+ L + PD T+ V++
Sbjct: 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYS 393
+C +G LG+ +H Y+ K D + N+L+ MY G +A VF M+ +D S
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS 356
Query: 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453
+TAMI G +G KAL+ ++ M Q + PDE+T VLSAC+ G ++ G K
Sbjct: 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK------ 410
Query: 454 RVYNLQPQTEHY------GCMVDLFGRAGLIREALDLIKSMP 489
++ L + +++++ + I +AL++ ++P
Sbjct: 411 -LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 4e-46
Identities = 102/368 (27%), Positives = 180/368 (48%), Gaps = 12/368 (3%)
Query: 84 YLYNFIIQCLSNA-NPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAY 142
+ II L +A N EA AL+REM G T +L+A S R GQQ+H
Sbjct: 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249
Query: 143 SMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY 202
+KT ++ + +V L+ +Y+ CG I+ +F P+ V+W +++ Y Y
Sbjct: 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD--GMPEKT--TVAWNSMLAGYALHGY 305
Query: 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIH 262
EA+ +++M + + D I++ S+L L + H + F L D+ +
Sbjct: 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL--DIVAN 363
Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322
AL+D+Y K G + AR VFD MP KN++SWN++IAG + G+ +A+++F RM G+
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNH-INTDGFIGNALVDMYAKCGRIDQAFG 381
P+ T + VL++C G E G + + +NH I ++++ + G +D+A+
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
Query: 382 VFRSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHA 439
+ R + V + A++ IH L + G+ P+++ +V +L+ + +
Sbjct: 484 MIRRAPFKPTVNMWAALLTACRIHKNL--ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541
Query: 440 GLVEEGCK 447
G E K
Sbjct: 542 GRQAEAAK 549
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-39
Identities = 100/374 (26%), Positives = 185/374 (49%), Gaps = 21/374 (5%)
Query: 41 KQFHAFIIKTGSPQHQTQI-LYDKII----SLSRGNEIENL--SLQNPQVYLYNFIIQ-C 92
++ H +++KTG + + + +I SL E E + ++ + +I
Sbjct: 308 REMHGYVVKTG---FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 93 LSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNV 152
N P +A+ Y M + P+ T+ VL AC L VG ++H + + L+S V
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424
Query: 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212
V N L+ +Y+ C I ++FH ++D++SWT++I A ++++ L FF
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHN----IPEKDVISWTSII-AGLRLNNRCFEALIFFR 479
Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272
L+P+ + L+ LSAC+++G L G +IH ++ D F+ NAL+D+Y++C
Sbjct: 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF--DGFLPNALLDLYVRC 537
Query: 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332
G + A F+ K+VVSWN ++ G G+ A+++F RM G+ PD+ T + +L
Sbjct: 538 GRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
Query: 333 NSCANIGWLELG-KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-D 390
+C+ G + G ++ H+ +K I + +VD+ + G++ +A+ M D
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656
Query: 391 VYSYTAMIVGLAIH 404
+ A++ IH
Sbjct: 657 PAVWGALLNACRIH 670
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 6e-18
Identities = 70/300 (23%), Positives = 124/300 (41%), Gaps = 34/300 (11%)
Query: 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353
NS + L GQ ++AL + MQ L + D+ V + C +E G V +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI 413
+H + +GNA++ M+ + G + A+ VF M RD++S+ ++ G A G +AL +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 414 FSEMSQVGIEPDEVTFVGVLSACS-----------HAGLVEEG----------------- 445
+ M G+ PD TF VL C HA +V G
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 446 CKHFLDMSRVYNLQPQTE--HYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGAL 500
C + V++ P+ + + M+ + G E L+L +M + PD ++
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 501 LGACKIHAKVELAEIVMENLVRFEPEGDGA-YILMTNIYSSKNRWKEALKLRKKMKERKV 559
+ AC++ L + +V+ D + + +Y S W EA K+ +M+ +
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 8e-16
Identities = 70/316 (22%), Positives = 138/316 (43%), Gaps = 24/316 (7%)
Query: 215 QANLRPDGMILVIVLSACSKLGDLSLGIKI-HRYITDNHFNLSPDVFIHNALIDMYLKCG 273
+A L+ D + ++S C+K G + ++ H + + +V ALID + G
Sbjct: 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG---VEANVHTFGALIDGCARAG 521
Query: 274 NIPSARKVFDEMPVKNV----VSWNSMIAGLTHRGQFKEALDIFRRMQGLG--LKPDDFT 327
+ A + M KNV V +N++I+ G A D+ M+ + PD T
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387
+ ++ +CAN G ++ K V+ + + +I + V+ ++ G D A ++ MK
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 388 CRDVYS---YTAMIVGLAIH-GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443
+ V + + +V +A H G KA +I + + GI+ V++ ++ ACS+A +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 444 EGCKHFLDMSRVYNLQPQTEHYG------CMVDLFGRAGLIREALDLIKSMPLVPDAFVW 497
+ + + D+ + L+P C + +A E L +K + L P+ +
Sbjct: 702 KALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKA---LEVLSEMKRLGLCPNTITY 757
Query: 498 GALLGACKIHAKVELA 513
LL A + ++
Sbjct: 758 SILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-13
Identities = 70/313 (22%), Positives = 128/313 (40%), Gaps = 37/313 (11%)
Query: 283 DEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-GLGLKPDDFTLVCVLNSCANIGWL 341
D K+ VS S I L G+ +EAL++F ++ G T ++ +C + +
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGL 401
K V+ +++ + D ++ N ++ M+ KCG + A +F M R++ S+ +I GL
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199
Query: 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG---------------- 445
G +A +F EM + G + + TFV +L A + G G
Sbjct: 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259
Query: 446 ------------CKHFLDMSRVYNLQPQ--TEHYGCMVDLFGRAGLIREALDLIKSM--- 488
C D V++ P+ T + M+ + G EAL L M
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 489 PLVPDAFVWGALLGACKIHAKVELAEIVMENLVR--FEPEGDGAYILMTNIYSSKNRWKE 546
+ D F + ++ A +E A+ L+R F + L+ ++YS R ++
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV-DLYSKWGRMED 378
Query: 547 ALKLRKKMKERKV 559
A + +M + +
Sbjct: 379 ARNVFDRMPRKNL 391
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 4e-13
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 17/210 (8%)
Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCR----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
N L+ + A ID A V R ++ D YT +I A GK ++F EM
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500
Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
G+E + TF ++ C+ AG V + + M R N++P + ++ G++G +
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVD 559
Query: 480 EALDLIKSM-----PLVPDAFVWGALLGACKIHAKVELAEIVMENL----VRFEPEGDGA 530
A D++ M P+ PD GAL+ AC +V+ A+ V + + ++ PE
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE---V 616
Query: 531 YILMTNIYSSKNRWKEALKLRKKMKERKVK 560
Y + N S K W AL + MK++ VK
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 69/338 (20%), Positives = 133/338 (39%), Gaps = 62/338 (18%)
Query: 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL-----SL 240
D +TTLI K F +M A + + ++ C++ G + +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM-----PVK-NVVSWN 294
GI + N+ PD + NALI + G + A V EM P+ + ++
Sbjct: 531 GIMRSK-------NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583
Query: 295 SMIAGLTHRGQFKEALDIFRRMQGLGLK--PDDFTLVCVLNSCANIGWLELGKWVHTYLD 352
+++ + GQ A ++++ + +K P+ +T+ +NSC+ G + ++ +
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA--VNSCSQKGDWDFALSIYDDMK 641
Query: 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVF----------------------------- 383
K + D +ALVD+ G +D+AF +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 384 ---------RSMKCR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433
+S+K R V + A+I L + KAL++ SEM ++G+ P+ +T+ +L
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471
A + G L ++ ++P C+ L
Sbjct: 762 VASERKDDADVGLD-LLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 6e-11
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 288 KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337
+VV++N++I G +G+ +EAL +F M+ G+KP+ +T +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 9e-11
Identities = 79/418 (18%), Positives = 170/418 (40%), Gaps = 73/418 (17%)
Query: 113 LLPN----TYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI 168
L+ N T+ + ++ C SQ + +V + L ++ ++ TL+ A G +
Sbjct: 431 LIRNPTLSTFNM--LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 169 KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV 228
A+ ++FH +M A + + +
Sbjct: 489 DAMFEVFH-----------------------------------EMVNAGVEANVHTFGAL 513
Query: 229 LSACSKLGDL-----SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283
+ C++ G + + GI + N+ PD + NALI + G + A V
Sbjct: 514 IDGCARAGQVAKAFGAYGIMRSK-------NVKPDRVVFNALISACGQSGAVDRAFDVLA 566
Query: 284 EM-----PVK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK--PDDFTLVCVLNSC 335
EM P+ + ++ +++ + GQ A ++++ + +K P+ +T+ +NSC
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI--AVNSC 624
Query: 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV---- 391
+ G + ++ + K + D +ALVD+ G +D+AF + + + + +
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
Query: 392 YSYTAMIVGLAIHGKAW-KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450
SY++++ G + K W KAL+++ ++ + + P T +++A + + +
Sbjct: 685 VSYSSLM-GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLI---KSMPLVPDAFVWGALLGACK 505
+M R+ L P T Y ++ R LDL+ K + P+ + + G C
Sbjct: 744 EMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 74/371 (19%), Positives = 153/371 (41%), Gaps = 64/371 (17%)
Query: 85 LYNFIIQCLSNANPLEAI-ALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYS 143
LY +I + + ++A+ ++ EM+ G+ N +T ++ C R GQ A+
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC-----ARAGQVAKAFG 528
Query: 144 MKTALLS-NV----YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-----DLVSWTTL 193
+ S NV VFN L+ + CG AV + F +A+ D ++ L
Sbjct: 529 AYGIMRSKNVKPDRVVFNALI---SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHF 253
++A A + + + N++ + I +++CS+ GD + I+ +
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-- 643
Query: 254 NLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV----VSWNSMIAGLTHRGQFKEA 309
+ PD +AL+D+ G++ A ++ + + + VS++S++ ++ +K+A
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703
Query: 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369
L+++ ++ + L+P V T NAL+
Sbjct: 704 LELYEDIKSIKLRPT----------------------VSTM-------------NALITA 728
Query: 370 YAKCGRIDQAFGVFRSMK----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425
+ ++ +A V MK C + +Y+ ++V A LD+ S+ + GI+P+
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 426 EVTFVGVLSAC 436
V + C
Sbjct: 789 LVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 9e-09
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438
DV +Y +I G GK +AL +F+EM + GI+P+ T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 257 PDVFIHNALIDMYLKCGNIPSARKVFDEMPVK----NVVSWNSMIAGL 300
PDV +N LID Y K G + A K+F+EM + NV +++ +I GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 3e-07
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 364 NALVDMYAKCGRIDQAFGVFRSMKCR----DVYSYTAMIVGLA 402
N L+D Y K G++++A +F MK R +VY+Y+ +I GL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD 325
V++N++I GL G+ +EAL++F+ M+ G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
V++NS+I+G G+ +EAL++F+ M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP 286
L PDV +N LID + G + A ++ DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 81 PQVYLYNFIIQCLSNANPL-EAIALYREMLIKGLLPNTYT 119
P V YN +I + EA+ L+ EM +G+ PN YT
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323
+ ++N+++ L G AL + M+ GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422
+Y ++I G GK +AL++F EM + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (81), Expect = 0.004
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317
+VV++N++I GL G+ EA+++ M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 608 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.31 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.07 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.98 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.95 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.93 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.92 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.9 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.88 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.84 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.83 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.71 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.66 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.66 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.64 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.6 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.58 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.52 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.44 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.43 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.42 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.4 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.4 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.39 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.28 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.28 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.16 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.12 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.03 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.87 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.87 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.85 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.82 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.81 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.8 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.76 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.67 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.65 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.6 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.54 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.51 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.51 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.49 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.48 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.47 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.44 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.42 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.33 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.31 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.24 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.24 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.17 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.16 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.12 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.1 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.08 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.06 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.06 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.05 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.04 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.02 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.99 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.92 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.88 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.87 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.8 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.78 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.77 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.73 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.71 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.63 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.63 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.53 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.53 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.4 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.26 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.21 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.19 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.01 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.98 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.92 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.92 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.82 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.69 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.59 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.39 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.35 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.26 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.14 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.13 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.13 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.08 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.07 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.02 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.96 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.86 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.85 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.82 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.71 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.71 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.59 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.51 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.49 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.44 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.42 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.34 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.95 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.92 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.91 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.77 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.73 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.64 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.45 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.4 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.98 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.51 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.48 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.29 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.19 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.16 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.56 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.46 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.26 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.42 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.05 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.03 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 89.91 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.89 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.73 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.46 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.42 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.41 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.4 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.22 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.75 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.68 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.51 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.33 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.82 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.18 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.05 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.95 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.82 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.59 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.47 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.09 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.89 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.7 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.52 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.37 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.03 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.81 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.75 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.71 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.47 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.46 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.42 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.28 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.22 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.61 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.53 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.48 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 83.35 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.73 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.7 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.53 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.27 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.27 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 81.11 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.95 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 80.66 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.36 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.18 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.18 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-91 Score=764.71 Aligned_cols=594 Identities=35% Similarity=0.617 Sum_probs=575.4
Q ss_pred cccCCCCchhhhHHHHHHhhcccc-------hhhccC---ChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHH
Q 047146 6 TVASGSRYNDINTFQQLSLLHQSP-------RLESSK---SVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIE 74 (608)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A 74 (608)
+.+.|...+|..+|..+...+..| ++++|+ ++..++++|+++++.|+.++..+.+ |+.+|+++|++++|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 456788999999999987666555 466675 4678999999999999999999999 99999999999999
Q ss_pred Hh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCC
Q 047146 75 NL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150 (608)
Q Consensus 75 ~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 150 (608)
.+ .|+.||+++||+||.+|++.|+.++ +++|.+|.+.|+.||..||+.+|.+|++.|+++.|.++|..+.+.|+.|
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 99 8999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
|..+||+||.+|+++|++++|.++|++| ..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 9999999999999999999999999995 468999999999999999999999999999999999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
+|++.|+++.|.++++.+.+.|+. |+..++++|+++|+++|++++|.++|++|.++|.++||++|.+|++.|+.++|+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLI--SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999655 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 390 (608)
.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d 553 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKD 553 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCC
Confidence 99999986 5999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+++++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999966899999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHH
Q 047146 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 550 (608)
+|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++.+++|+++..|..|+++|++.|+|++|.++
T Consensus 634 ~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred HHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhhCCCC
Q 047146 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607 (608)
Q Consensus 551 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 607 (608)
++.|+++|++++||+||+++++++|.|..+|.+||+..+||..|+++..+|++.||+
T Consensus 714 r~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 714 RKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA 770 (857)
T ss_pred HHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999999999999999999999999999999996
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=682.77 Aligned_cols=523 Identities=33% Similarity=0.558 Sum_probs=511.0
Q ss_pred CCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCC-CCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHH
Q 047146 79 QNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKG-LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156 (608)
Q Consensus 79 ~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 156 (608)
..++..+|+.+|.++.+.|++++ +++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567899999999999999999 99999998765 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC
Q 047146 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG 236 (608)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 236 (608)
.|+++|+++|++++|.++|++| +.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 9999999999999999999995 568999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047146 237 DLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM 316 (608)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 316 (608)
+.+.+.+++..+.+.|+. ||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|
T Consensus 239 ~~~~~~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVV--GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred cHHHHHHHHHHHHHhCCC--ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999655 499999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHH
Q 047146 317 QGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTA 396 (608)
Q Consensus 317 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 396 (608)
.+.|+.||..||+.++.+|++.|.++.|.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+.+||+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 476 (608)
||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999987899999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 477 LIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 477 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
++++|.+++++|+..|+..+|++++.+|..+|+++.|..+++++.++.|++..+|..|+++|.+.|+|++|.+++++|++
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhhCCCC
Q 047146 557 RKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGYI 607 (608)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 607 (608)
+|+++.|++||+.+++.+|.|.+++..||+..++|..|+++..+|++.||+
T Consensus 557 ~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 557 KGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred cCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-76 Score=649.36 Aligned_cols=541 Identities=26% Similarity=0.431 Sum_probs=473.5
Q ss_pred cccCCCCchhhhHHHHHHhhcccc-------hhhccC---ChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHH
Q 047146 6 TVASGSRYNDINTFQQLSLLHQSP-------RLESSK---SVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIE 74 (608)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A 74 (608)
+.++|...++..+|..+...+..| ++++|. .+..+.++|+.+++.|+.++..+.+ ++.+|+++|+++.|
T Consensus 61 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A 140 (857)
T PLN03077 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHA 140 (857)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHH
Confidence 457788999999999877644332 345553 5788999999999999999999999 99999999999999
Q ss_pred Hh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCC
Q 047146 75 NL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150 (608)
Q Consensus 75 ~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 150 (608)
.+ +|++||+++||++|.+|++.|+.++ +++|++|...|+.||.+||+.+|++|+..+++..+.++|..+.+.|+.|
T Consensus 141 ~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 220 (857)
T PLN03077 141 WYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220 (857)
T ss_pred HHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCc
Confidence 99 9999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
|..++|+||.+|+++|++++|.++|++ ++.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~----m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDR----MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhc----CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 999999999999999999999999999 4568999999999999999999999999999999999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
+|++.|+++.|.+++..+.+.|+. ||..+|++|+.+|+++|++++|.++|++|..||.++||++|.+|++.|++++|+
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFA--VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCc--cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999654 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 390 (608)
++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHH-
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV- 469 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~- 469 (608)
+++||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+ .|+.++..++++|+
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~ 532 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLD 532 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHH
Confidence 99999999999999999999999999986 5999999999999999999999999998888877 57665555545555
Q ss_pred -----------------------------HHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 470 -----------------------------DLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 470 -----------------------------~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
.+|++.|+.++|+++|++| ++.||..||++++.+|.+.|++++|.++|
T Consensus 533 ~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 4455555555555555554 44555555555555555555555555555
Q ss_pred HHHHhcC--CCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 518 ENLVRFE--PEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 518 ~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
+.|.+.. .++..+|.+++++|.+.|++++|.+++++|
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 5555221 222345555555555555555555555555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=567.37 Aligned_cols=504 Identities=16% Similarity=0.244 Sum_probs=464.4
Q ss_pred CchhHHH-HHHHHHccCCchHHHh---hCCCCC-----cchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHH
Q 047146 54 QHQTQIL-YDKIISLSRGNEIENL---SLQNPQ-----VYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYV 123 (608)
Q Consensus 54 ~~~~~~~-l~~~~~~~g~~~~A~~---~~~~~~-----~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~l 123 (608)
++..... +...++++|++++|.+ .|+.++ ...++.++.+|.+.|..++ +.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3444444 8888889999999999 555444 4556677788999999999 999999974 999999999
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCc
Q 047146 124 LKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYP 203 (608)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 203 (608)
|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|...++.||..+||+||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHc
Q 047146 204 TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD 283 (608)
Q Consensus 204 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (608)
++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.+.+..||..+|+++|.+|+++|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998666778899999999999999999999999999
Q ss_pred cCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 047146 284 EMP----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359 (608)
Q Consensus 284 ~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (608)
.|. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 997 4677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999995 689999999999999999999999999999999999999999999999
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cC-------------------CHHHHHHHHHhC---C
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AG-------------------LIREALDLIKSM---P 489 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~~---~ 489 (608)
|++.|++++|.++|..|.+ .|+.||..+|++++.+|.+ ++ ..++|..+|++| +
T Consensus 764 ~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 9999999999999999998 6999999999999977432 22 246799999999 8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 047146 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRF-EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPG 564 (608)
Q Consensus 490 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 564 (608)
+.||..||+.++.++.+.+..+.+..+++.+... .+++..+|+.|++.+.+. .++|..++++|.+.|+.|+..
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999998888888899888888876533 455667999999988432 368999999999999998765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-64 Score=540.63 Aligned_cols=487 Identities=15% Similarity=0.200 Sum_probs=458.7
Q ss_pred ccCChhHHHHHHHHHHHhCC-CCchhHHH-HHHHHHccCCchHHHh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHH
Q 047146 33 SSKSVGQLKQFHAFIIKTGS-PQHQTQIL-YDKIISLSRGNEIENL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYR 106 (608)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~-l~~~~~~~g~~~~A~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~ 106 (608)
.++++..+.+++..|.+.|. +++....+ ++..|++.|..++|.. .|+.||..+||.+|.+|++.|+.+. .++|+
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 45788999999999999996 45667777 9999999999999998 7888999999999999999999999 99999
Q ss_pred HHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCC
Q 047146 107 EMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD 186 (608)
Q Consensus 107 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 186 (608)
+|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+..||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHH--CCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQ--ANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
..+||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.++ .|+..+|+.
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi--~p~~~tyns 619 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI--KGTPEVYTI 619 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCChHHHHH
Confidence 99999999999999999999999999976 67999999999999999999999999999999999854 559999999
Q ss_pred HHHHHHhcCChHHHHHHHccCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC
Q 047146 265 LIDMYLKCGNIPSARKVFDEMP----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 340 (608)
+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999997 689999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047146 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK----CRDVYSYTAMIVGLAIHGKAWKALDIFSE 416 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 416 (608)
+++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.+++++
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 58999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc----c-------------------ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 047146 417 MSQVGIEPDEVTFVGVLSACSH----A-------------------GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473 (608)
Q Consensus 417 m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 473 (608)
|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+ .|+.||..+|+.++.+++
T Consensus 780 M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 780 AKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhc
Confidence 9999999999999999876542 1 124679999999999 699999999999999999
Q ss_pred hcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 474 RAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 474 ~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+.+..+.+..+++.| +..|+..+|++++.++.+. .++|..++++|.+.+
T Consensus 859 ~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 859 LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999998 4567889999999998432 468999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-62 Score=524.07 Aligned_cols=445 Identities=24% Similarity=0.370 Sum_probs=419.7
Q ss_pred ccCCCCchhhhHHHHHHhhc-c-------cchhhccC---ChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHH
Q 047146 7 VASGSRYNDINTFQQLSLLH-Q-------SPRLESSK---SVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIE 74 (608)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A 74 (608)
...|++..|..+|..+...+ . ..++.+|. +++.+.++|..+.+.|+.|+..+.+ |+++|+++|+++.|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 45788899999999876533 1 22355554 6788999999999999999999999 99999999999999
Q ss_pred Hh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCC
Q 047146 75 NL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150 (608)
Q Consensus 75 ~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 150 (608)
.+ +|+.||+++||++|.+|++.|+.++ +++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.+
T Consensus 178 ~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 178 RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred HHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 99 8999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
|..++|+||++|+++|++++|.++|++| ..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999995 567999999999999999999999999999999999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
+|++.|+++.|.+++..+.+.|+. ||..++++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|+
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~--~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFP--LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCC--CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999655 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC-C
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-C 388 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 388 (608)
++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|. .
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~ 491 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999976 6999999999999999999999999999999997 6
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP 460 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 460 (608)
|+..+|++++.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+ .|+.+
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 8999999999999999999999999999975 5675 56999999999999999999999999998 57753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=296.96 Aligned_cols=482 Identities=12% Similarity=0.047 Sum_probs=249.4
Q ss_pred HHHHHHccCCchHHHh------hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCc
Q 047146 61 YDKIISLSRGNEIENL------SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSL 133 (608)
Q Consensus 61 l~~~~~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 133 (608)
+...|...|+.++|.+ ...+.+...+..++..+.+.|+.+. +.+++.+... .+++..++..+...+...|++
T Consensus 403 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCH
Confidence 4444444444444444 2222223334444444445555554 5555554432 122334455555555555555
Q ss_pred HHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 047146 134 RVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213 (608)
Q Consensus 134 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 213 (608)
++|...+..+.+.. +.+...+..+...+...|++++|.+.|+.+.... +.+..++..+...+.+.|+.++|..+++++
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554432 1223344445555555555555555555543322 224444555555555555555555555555
Q ss_pred HHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCCh
Q 047146 214 CQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNV 290 (608)
Q Consensus 214 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~ 290 (608)
...+ +.+...+..+...+...|+++.|..+++.+.+..+. +..++..+..+|.+.|++++|...|+++. +.+.
T Consensus 560 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 635 (899)
T TIGR02917 560 AELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD---SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635 (899)
T ss_pred HHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 4432 223334445555555555555555555555543221 44555555555555555555555555543 2234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 370 (608)
..+..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.+ +.+...+..+...|
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH
Confidence 445555555555555555555555555432 2234455555555555555555555555555443 23444445555555
Q ss_pred HhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHH
Q 047146 371 AKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
.+.|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.++
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 55566666665555543 2333445555555555666666666665555531 22344555555555556666666666
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
|+++.+. .+++...+..++..+.+.|+ .+|+..++++ ...| +..++..+...+...|++++|...++++++.+|.
T Consensus 793 ~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6665541 23345555555666666666 5566555555 3233 3444555555566666666666666666666666
Q ss_pred CCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 527 GDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 527 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
++.++..++.+|.+.|++++|.+++++|.
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666666666666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=293.37 Aligned_cols=535 Identities=11% Similarity=-0.003 Sum_probs=290.0
Q ss_pred cCCCCchhhhHHHHHHhhccc---------chhhccCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHHHh-
Q 047146 8 ASGSRYNDINTFQQLSLLHQS---------PRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENL- 76 (608)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A~~- 76 (608)
..|++.+++..|+..-..... ..+...++++.+...+..+++..+ .+..... +...+.+.|++++|..
T Consensus 273 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 273 QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred HhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 456677777777653222211 112234566777777777766543 2334444 7777788888887777
Q ss_pred -----hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCC
Q 047146 77 -----SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLS 150 (608)
Q Consensus 77 -----~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 150 (608)
...+.+...|+.+...+.+.|++++ .+.|+++.+... .+...+..+...+...|++++|...+..+.+... .
T Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 429 (899)
T TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-E 429 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-c
Confidence 3344556677777777888888877 888877766431 1334555555566667777777777776665432 1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
.......++..|.+.|++++|..+++.+... .+.+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+..
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 507 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLAR 507 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHH
Confidence 2234445555666666666666666665442 22345556666666666666666666666665432 223334455555
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChh
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 307 (608)
.+...|++++|.+.++.+.+..+. +..++..+...+.+.|+.++|..+|+++. +.+...+..++..+...|+++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 555666666666666665554322 44555555555555555555555555543 223334444555555555555
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhh--
Q 047146 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS-- 385 (608)
Q Consensus 308 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-- 385 (608)
+|..+++++.... +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+..+|.+.|++++|..+|++
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554432 3334444455555555555555555555444432 22333444444555555555555555544
Q ss_pred --------------------------------cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047146 386 --------------------------------MKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV 430 (608)
Q Consensus 386 --------------------------------~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 430 (608)
+.. .+...+..+...+...|++++|...|+++... .|+..++.
T Consensus 663 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 740 (899)
T TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAI 740 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHH
Confidence 432 23334444444555555555555555555442 33334444
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHA 508 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 508 (608)
.+..++.+.|++++|.+.+..+.+ ..+.+...+..+...|.+.|++++|.+.|+++ ...| +..++..+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 445555555555555555555544 12334455555555555555555555555555 2222 4445555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+ ++|...++++.+..|+++..+..++.+|...|++++|.++++++.+.
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 55555555555555555555555566666666666666666665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-22 Score=224.29 Aligned_cols=415 Identities=10% Similarity=0.011 Sum_probs=307.8
Q ss_pred HhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCC-cchHHH------------H
Q 047146 127 CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRD-LVSWTT------------L 193 (608)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~------------l 193 (608)
+...|++++|...++..++.. +.+...+..+...|.+.|++++|+..|++..+..+... ...|.. .
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 455678888888888877753 23566777777888888888888888877554333211 112221 1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcC
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 273 (608)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|+.+++..+. +...+..+...|. .+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~---~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG---NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH-hc
Confidence 335567788888888888887653 224456666777788888888888888888876543 4556666666664 45
Q ss_pred ChHHHHHHHccCCCCC------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCCh
Q 047146 274 NIPSARKVFDEMPVKN------------VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL 341 (608)
Q Consensus 274 ~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 341 (608)
+.++|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 6788888877765321 1234456667888999999999999998863 23455677788889999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCC----Ch---------hHHHHHHHHHHHcCChH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR----DV---------YSYTAMIVGLAIHGKAW 408 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~ 408 (608)
++|...++.+.+.. +.+...+..+...+...|+.++|...++.+... +. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999988754 234444455556677889999999999988642 11 11234566788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
+|..+++. .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++.+|...|++++|++.++..
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999872 2445567778888999999999999999999872 2336788999999999999999999999988
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 489 -PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG------AYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 489 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...| +...+..+..++...|++++|.++++++.+..|+++. .+..++.++...|++++|+..+++...
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455 4566777888899999999999999999988766543 566789999999999999999999863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-22 Score=223.58 Aligned_cols=514 Identities=12% Similarity=0.042 Sum_probs=280.0
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHHHh------hCCCCCcchH----------------H
Q 047146 31 LESSKSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENL------SLQNPQVYLY----------------N 87 (608)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A~~------~~~~~~~~~~----------------~ 87 (608)
..+-++.+.+++....+....+. ++.+.. .+.++...|+.++|.+ ...+.+...+ -
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHH
Confidence 34444566677777766655443 455556 8888999999999998 4444444333 2
Q ss_pred HHHHHHHcCCCccH-HHHHHHHHHCCCCCCce-eHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhc
Q 047146 88 FIIQCLSNANPLEA-IALYREMLIKGLLPNTY-TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC 165 (608)
Q Consensus 88 ~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 165 (608)
.....+...|++++ ++.|+.+.+.+ +|+.. ............|+.++|...++.+.+.. +.+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc
Confidence 22346778899999 99999988653 23322 11111222334588999999999998864 23566788888999999
Q ss_pred CCHHHHHHHhcccCCCCCCC----------------C---cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH
Q 047146 166 GLIKAVHKLFHFRQHPQAQR----------------D---LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILV 226 (608)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~----------------~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 226 (608)
|+.++|+..|+++....... + ...+...+..+-.....+.|...+.++......|+... .
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~ 273 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-R 273 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-H
Confidence 99999999998864421100 0 00011101111111111222222222222111111111 1
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC--CCh---hhHHH------
Q 047146 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNV---VSWNS------ 295 (608)
Q Consensus 227 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------ 295 (608)
.....+...|++++|+..++.+++..+. +..++..+..+|.+.|++++|+..|++... |+. ..|..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 1122334455555555555555554322 444555555555555555555555554431 110 11111
Q ss_pred ------HHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHH----
Q 047146 296 ------MIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNA---- 365 (608)
Q Consensus 296 ------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 365 (608)
....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++.+.+... .+...+..
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 1223344555555555555555432 22233344444445555555555555555544321 12222233
Q ss_pred --------------------------------------HHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHc
Q 047146 366 --------------------------------------LVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAIH 404 (608)
Q Consensus 366 --------------------------------------li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 404 (608)
+...+...|++++|++.|++..+ | +...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33444455555555555555432 2 233444455555555
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh---------hHHHHHHHHHHh
Q 047146 405 GKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT---------EHYGCMVDLFGR 474 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~ 474 (608)
|++++|...++++.+. .|+ ...+..+...+...++.++|...++.+... ...++. ..+..+...+..
T Consensus 509 G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555555555555542 232 223333333344455555555555544321 111111 112234556667
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 475 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
.|+.++|+++++.- .++...+..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|++.+++.
T Consensus 586 ~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777777777743 2345566677788889999999999999999999999999999999999999999999999987
Q ss_pred HhCC
Q 047146 555 KERK 558 (608)
Q Consensus 555 ~~~~ 558 (608)
.+..
T Consensus 664 l~~~ 667 (1157)
T PRK11447 664 PATA 667 (1157)
T ss_pred hccC
Confidence 6543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-18 Score=188.10 Aligned_cols=516 Identities=9% Similarity=0.004 Sum_probs=323.0
Q ss_pred HHhhcccchhhccCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHHHh------hCCCCCcchHHHHHHHHH
Q 047146 22 LSLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENL------SLQNPQVYLYNFIIQCLS 94 (608)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A~~------~~~~~~~~~~~~li~~~~ 94 (608)
...+..+.....-++...+...+.+.++..+.. +.+.. |...|...|+.++|+. ...+.|...+..+ ..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i- 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh-
Confidence 444444444455577888888888888877765 55556 9999999999998888 4444444444443 322
Q ss_pred cCCCccH-HHHHHHHHHCCC------------------------------------CC--CceeHHHH-HHHHhccCCcH
Q 047146 95 NANPLEA-IALYREMLIKGL------------------------------------LP--NTYTLPYV-LKACWQSQSLR 134 (608)
Q Consensus 95 ~~~~~~~-~~~~~~m~~~g~------------------------------------~p--~~~t~~~l-l~~~~~~~~~~ 134 (608)
++... ..+|+++.+... .| +..+.... .+.|...++++
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 45555 677776655421 11 12222222 44555666666
Q ss_pred HHHHHHHHHHHhCcCCcHhHHHHHHHHHHh-cCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 047146 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAV-CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDM 213 (608)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 213 (608)
++..++..+.+.+. .+......|-..|.. .++ +++..+++. ..+.++..+..+...|.+.|+.++|.++++++
T Consensus 200 ~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 200 QADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67777766666553 233334444455555 244 666666443 33356777888888899999999999988887
Q ss_pred HHCCCC-CCHhHHHHH------------------------------HHHhhccCCchHHHHHH-----------------
Q 047146 214 CQANLR-PDGMILVIV------------------------------LSACSKLGDLSLGIKIH----------------- 245 (608)
Q Consensus 214 ~~~~~~-p~~~t~~~l------------------------------l~~~~~~~~~~~a~~~~----------------- 245 (608)
...-.. |...++..+ +..+.+.++++.++++.
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence 543211 222222111 23333344444333332
Q ss_pred ------------HHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC--C----ChhhHHHHHHHHHhcCC--
Q 047146 246 ------------RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--K----NVVSWNSMIAGLTHRGQ-- 305 (608)
Q Consensus 246 ------------~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~-- 305 (608)
..+.+..++ +....--+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~---~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPA---NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 222222111 344444455567788888888888877653 1 12233455666666655
Q ss_pred -hhHHHHH----------------------HHHHHh-CCC-CC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 047146 306 -FKEALDI----------------------FRRMQG-LGL-KP--DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT 358 (608)
Q Consensus 306 -~~~A~~~----------------------~~~m~~-~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (608)
..++..+ +..... .+. ++ +...+..+..++.. ++.++|...+....... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 2233222 111111 112 22 34555555555554 77777888666665544 3
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~ 435 (608)
+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+. .|+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 433333445555678888888888886653 44455666677788888888888888888775 34432 33334444
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 513 (608)
....|++++|...+++..+ ..|+...+..+..++.+.|+.++|+..+++. ...| +...+..+..++...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5566888888888888866 4567778888888888888888888888887 5566 455667777788888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
+..++++++..|+++..+..++.+|...|++++|+..+++..+...
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888888888888888888888875543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-20 Score=177.96 Aligned_cols=443 Identities=13% Similarity=0.114 Sum_probs=326.9
Q ss_pred HHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCC
Q 047146 89 IIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167 (608)
Q Consensus 89 li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 167 (608)
+..-..+.|++.+ .+. ..|.-..-..+......+-..+.+..+.+...+--...++.. +.-..+|+.+.+.+-..|+
T Consensus 54 lah~~yq~gd~~~a~~h-~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKH-CNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHhccCHHHHHHH-HhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhch
Confidence 3334445666666 333 333222111122222222233444444444443333333321 2235678888888888888
Q ss_pred HHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHH-HHHHhhccCCchHHHHHHH
Q 047146 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVI-VLSACSKLGDLSLGIKIHR 246 (608)
Q Consensus 168 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~ 246 (608)
+++|+..++.+.+.. +..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+ +.......|.+++|...+-
T Consensus 132 ~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 888888888766532 34667788888888888888888888888766 4565544332 3333445788888888888
Q ss_pred HHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047146 247 YITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKN---VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323 (608)
Q Consensus 247 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 323 (608)
+.++..+. =..+|+.|...+-..|++..|+..|++...-| ...|-.|...|-..+.+++|+..+.+.... .|
T Consensus 209 kAi~~qp~---fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 209 KAIETQPC---FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHhhCCc---eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 88776543 25677888888888888888888888876433 346777888888888888888888877764 44
Q ss_pred C-hHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 047146 324 D-DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIV 399 (608)
Q Consensus 324 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 399 (608)
+ ...+..+...|-..|.++.|+..++..+... +.-+..|+.|..++-..|++.+|++.+.+... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 4566667777778888888888888887764 33466788899999999999999999987763 34577888999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCC
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGL 477 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 477 (608)
+|...|..++|..+|....+ +.|.- ...+.|...|-.+|++++|+..++++.+ +.|+ ...|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999888 67765 4888999999999999999999999976 7786 6789999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHH
Q 047146 478 IREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 547 (608)
.+.|++.+.+. .+.|. ....+.|.+.|...|++.+|++.++.++++.|+.+.+|..++..+--..+|.+-
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 99999999887 77774 458888999999999999999999999999999999999888887766666553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-18 Score=182.21 Aligned_cols=470 Identities=11% Similarity=0.002 Sum_probs=318.9
Q ss_pred HccCCchHHHh------hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHH
Q 047146 66 SLSRGNEIENL------SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138 (608)
Q Consensus 66 ~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 138 (608)
...|++++|.. +..|.+..++..+...|.+.|+.++ +..+++..+. .|+...|..++..+ ++.++|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 44599998888 6667778899999999999999999 9999999875 45555555555333 88899999
Q ss_pred HHHHHHHhCcCCcHhHHHHHHHH--------HHhcCCHHHHHHHhcccCCCCCCCCcchHHHH-HHHHHhCCCchHHHHH
Q 047146 139 VHAYSMKTALLSNVYVFNTLMRL--------YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL-IQAYVKMDYPTEAILS 209 (608)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~ 209 (608)
+++.+.+... .+..++..+... |.+.+...++++ .....+.|+....... .+.|.+.|++++|+++
T Consensus 130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999998653 334455555554 766655555555 2222333445444444 8999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhhc-cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC-
Q 047146 210 FFDMCQANLRPDGMILVIVLSACSK-LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV- 287 (608)
Q Consensus 210 ~~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 287 (608)
+.++.+.+.. +..-...+-.++.. .++ +.+..+++...+ . +..+...+.+.|.+.|+.++|.++++++..
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk----~--d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF----T--DPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc----c--CHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999987533 34445566667766 466 777777553222 2 888899999999999999999999988751
Q ss_pred ----CChhhHH------------------------------HHHHHHH--------------------------------
Q 047146 288 ----KNVVSWN------------------------------SMIAGLT-------------------------------- 301 (608)
Q Consensus 288 ----~~~~~~~------------------------------~li~~~~-------------------------------- 301 (608)
|+..+|- .++..+.
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 356 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATR 356 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccC
Confidence 1110000 0111222
Q ss_pred -------------------------------hcCChhHHHHHHHHHHhC-C-CCCChHHHHHHHHHHhccCC---hHHHH
Q 047146 302 -------------------------------HRGQFKEALDIFRRMQGL-G-LKPDDFTLVCVLNSCANIGW---LELGK 345 (608)
Q Consensus 302 -------------------------------~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~---~~~a~ 345 (608)
+.|+.++|..+|+..... + -.++.....-++..+.+.+. ...+.
T Consensus 357 ~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 357 NKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred chhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 234444444444444331 0 11222222244555554443 11121
Q ss_pred H----------------------HHHHHHHc-CC-CC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHH
Q 047146 346 W----------------------VHTYLDKN-HI-NT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAM 397 (608)
Q Consensus 346 ~----------------------~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l 397 (608)
. ....+.+. +. ++ +...+..+..++.. ++.++|...+.+... |+......+
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~l 515 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAV 515 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHH
Confidence 1 11111111 11 23 55566677777766 778788886665543 443332233
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 477 (608)
...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++...+. . +++...+..+...+.+.|+
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCC
Confidence 44446899999999999987663 555556667777888899999999999998772 2 2233344444445556699
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 478 IREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+++|...+++. ...|+...|..+..++.+.|++++|+..+++++++.|+++..+..++.++...|++++|+..+++..+
T Consensus 592 ~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 592 PELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999988 67788888999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 047146 557 RK 558 (608)
Q Consensus 557 ~~ 558 (608)
..
T Consensus 672 l~ 673 (987)
T PRK09782 672 GL 673 (987)
T ss_pred hC
Confidence 43
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-20 Score=177.24 Aligned_cols=417 Identities=12% Similarity=0.130 Sum_probs=332.4
Q ss_pred HhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHH
Q 047146 127 CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEA 206 (608)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 206 (608)
.-+.|++++|++--..+-... +.+....-.+-..+.+..+.+....--....+ ..+.-..+|..+.+.+-..|++++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHhchHHHH
Confidence 446678888877544433322 11111122222445555555543332222111 1223456899999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccC
Q 047146 207 ILSFFDMCQANLRP-DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM 285 (608)
Q Consensus 207 ~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 285 (608)
+.+|+.+.+. +| ....|..+..++...|+.+.|.+.|.+.++.++. ..-+.+.+....-..|++++|...|-+.
T Consensus 136 l~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~---l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 136 LALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD---LYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc---hhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 9999999884 45 4568999999999999999999999999988543 2344455666666789999999888776
Q ss_pred C--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchh
Q 047146 286 P--VK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD-FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF 361 (608)
Q Consensus 286 ~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (608)
. .| -.+.|+.|...+-.+|+...|+..|++.... .|+- ..|..+...|...+.++.|...+....... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 5 33 3568999999999999999999999999874 5553 578888888889999999988887776543 33456
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 047146 362 IGNALVDMYAKCGRIDQAFGVFRSMKC--RD-VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACS 437 (608)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 437 (608)
++..+.-.|...|.++-|+..+++..+ |+ ...|+.|..++-..|+..+|...+.+... ..|+. ...+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHH
Confidence 667777889999999999999998874 43 47899999999999999999999999988 56764 58899999999
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-FVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~ 514 (608)
..|.+++|..+|....+ +.|. ....+.|...|-..|++++|+.-+++. .++|+. ..++.+...|...|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999999876 5565 567899999999999999999999998 889964 58999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 515 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.+.+++..+|.-..+.+.|+.+|..+|++.+|+.-+++..+-.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999987543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-18 Score=181.94 Aligned_cols=419 Identities=13% Similarity=0.044 Sum_probs=291.2
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCC
Q 047146 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201 (608)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 201 (608)
..-..+...|+++.|...|...++. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3444567778889999888888764 4677778888888888899999888888755532 235567788888888889
Q ss_pred CchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047146 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281 (608)
Q Consensus 202 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 281 (608)
++++|+..|......+-. +......++..+.. ..+........+......|. +..+.. |...........-
T Consensus 209 ~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 209 KYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKPENLPS---VTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred CHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCC---HHHHHH-HHHHccCCcchhh
Confidence 999888888766443211 11111111111111 12233333333333222222 222222 2222222222221
Q ss_pred HccCCCCCh---hhHHHHHHH---HHhcCChhHHHHHHHHHHhCC-CCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047146 282 FDEMPVKNV---VSWNSMIAG---LTHRGQFKEALDIFRRMQGLG-LKP-DDFTLVCVLNSCANIGWLELGKWVHTYLDK 353 (608)
Q Consensus 282 ~~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (608)
+....+.+. ..+..+... ....+++++|++.|++..+.+ ..| +...+..+...+...|+++.|...++..+.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 221111111 111111111 123478999999999998865 234 345677777778889999999999999887
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTF 429 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~ 429 (608)
.. +.....+..+..++...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|+ ...+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~ 436 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSH 436 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHH
Confidence 64 33456777888899999999999999997653 45788999999999999999999999999984 564 4577
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHH
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-F-------VWGAL 500 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l 500 (608)
..+..++.+.|++++|...|+...+ ..+.+...++.+..++...|++++|++.|++. .+.|+. . .++..
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 7888889999999999999999987 23445788999999999999999999999986 444421 1 11222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+..+...|++++|.+.++++++++|++...+..++.++.+.|++++|++.+++..+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 223345699999999999999999999889999999999999999999999998754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=181.76 Aligned_cols=288 Identities=14% Similarity=0.164 Sum_probs=193.3
Q ss_pred hhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCC-C------hhhHHHHHHHHHhcC
Q 047146 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-N------VVSWNSMIAGLTHRG 304 (608)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g 304 (608)
+...|+++.|...+..+.+.++. +..++..+...|...|++++|..+++.+... + ...+..+...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455555555555555554322 3445555555555555555555555544321 1 123444455555555
Q ss_pred ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHh
Q 047146 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFR 384 (608)
Q Consensus 305 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 384 (608)
++++|..+|+++.+. . +.+..+++.++.+|.+.|++++|.+.++
T Consensus 122 ~~~~A~~~~~~~l~~-----------------------------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (389)
T PRK11788 122 LLDRAEELFLQLVDE-----------------------------------G-DFAEGALQQLLEIYQQEKDWQKAIDVAE 165 (389)
T ss_pred CHHHHHHHHHHHHcC-----------------------------------C-cchHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 555555555555443 1 2233444555555556666666666655
Q ss_pred hcCCC--C------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 047146 385 SMKCR--D------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455 (608)
Q Consensus 385 ~~~~~--~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 455 (608)
.+.+. + ...|..+...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 166 RLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55421 1 123455667778888888888888888874 344 457777778888899999999999888762
Q ss_pred cCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHH
Q 047146 456 YNLQPQ--TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYI 532 (608)
Q Consensus 456 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 532 (608)
.|+ ...++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++++.+..|++. .+.
T Consensus 244 ---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~ 319 (389)
T PRK11788 244 ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFH 319 (389)
T ss_pred ---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHH
Confidence 333 456788889999999999999999987 5567777778888999999999999999999999999886 555
Q ss_pred HHHHHHHh---CCChHHHHHHHHHHHhCCCccCCc
Q 047146 533 LMTNIYSS---KNRWKEALKLRKKMKERKVKKTPG 564 (608)
Q Consensus 533 ~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 564 (608)
.+...+.. .|+.+++..++++|.+++++++|.
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55555543 568999999999999999998887
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=175.46 Aligned_cols=297 Identities=14% Similarity=0.132 Sum_probs=231.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCC-CchHHHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLS-PDVFIHNALIDMYL 270 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-p~~~~~~~li~~~~ 270 (608)
.....+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+.+...... ....++..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33455678899999999999998863 23456788899999999999999999999987532110 01356788999999
Q ss_pred hcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHH
Q 047146 271 KCGNIPSARKVFDEMPV---KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 347 (608)
+.|++++|..+|+++.. .+..+++.++..+.+.|++++|.+.++++.+.+..++....
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------- 179 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------- 179 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-------------------
Confidence 99999999999999874 46678999999999999999999999999876422221100
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
...+..+...+.+.|++++|.+.|+++.+ | +...+..+...+.+.|++++|.++++++.+.+...
T Consensus 180 ------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 180 ------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred ------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 11224566677778888888888887653 2 35577778888999999999999999988753222
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGA 503 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 503 (608)
...++..+..++...|++++|.+.++++.+ ..|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 245678888899999999999999999877 3567667788999999999999999999877 667999999888877
Q ss_pred HHH---cCCHHHHHHHHHHHHhc
Q 047146 504 CKI---HAKVELAEIVMENLVRF 523 (608)
Q Consensus 504 ~~~---~~~~~~a~~~~~~~~~~ 523 (608)
+.. .|+.+++...++++.+.
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHH
Confidence 664 55888888888888753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-17 Score=176.53 Aligned_cols=328 Identities=11% Similarity=-0.021 Sum_probs=232.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHH
Q 047146 190 WTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269 (608)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~ 269 (608)
...++..+.+.|++++|+.+++........+ ...+..++.++...|+++.|...++.+.+..+. +...+..+...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~---~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC---QPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHH
Confidence 3445666777788888888877776653332 334444445556678888888888887777544 566677777777
Q ss_pred HhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHH
Q 047146 270 LKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346 (608)
Q Consensus 270 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 346 (608)
...|++++|...|++.. +.+...+..+...+...|++++|...++++.... |+.......+..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888887777765 2345567777777888888888888887776543 322222222234667788888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHH
Q 047146 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWK----ALDIFSEMSQ 419 (608)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~ 419 (608)
.+..+.+....++......+..++...|++++|+..|++... .+...+..+...+...|++++ |+..|++..+
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 777776654334444445556777888888888888887653 355677778888888888875 7888888887
Q ss_pred CCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 047146 420 VGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFV 496 (608)
Q Consensus 420 ~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 496 (608)
..|+ ...+..+...+...|++++|...++++.+ ..| +...+..+..+|.+.|++++|++.++++ ...|+...
T Consensus 279 --l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 279 --FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 4564 45788888888889999999998888876 244 4566777888888999999999888887 45665443
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 497 -WGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 497 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+..+..++...|+.++|...++++.+..|++.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 33345677888999999999999998888764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-17 Score=177.56 Aligned_cols=396 Identities=8% Similarity=-0.009 Sum_probs=213.2
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCC
Q 047146 122 YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD 201 (608)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 201 (608)
-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..... +.+...+..+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33444556666677776666665421 2334456666666677777777777776644322 223445556666666677
Q ss_pred CchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047146 202 YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281 (608)
Q Consensus 202 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 281 (608)
++++|+..+++..+.. +.+.. +..+..++...|+.++|...++.+.+..++ +..++..+..++...|..+.|++.
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHH
Confidence 7777777777766541 22333 555666666667777777777777666443 455555566666666666666666
Q ss_pred HccCCCCChh--------hHHHHHHHHHh-----cCCh---hHHHHHHHHHHhC-CCCCChH-HHHHHHHHHhccCChHH
Q 047146 282 FDEMPVKNVV--------SWNSMIAGLTH-----RGQF---KEALDIFRRMQGL-GLKPDDF-TLVCVLNSCANIGWLEL 343 (608)
Q Consensus 282 ~~~~~~~~~~--------~~~~li~~~~~-----~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~~ 343 (608)
++.... ++. ....++..... .+++ ++|++.++.+.+. ...|+.. .+..
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~------------- 238 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR------------- 238 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH-------------
Confidence 666553 111 11111111111 1112 3444444444432 1112111 0000
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC---h-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD---V-YSYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
.....+.++...|++++|+..|+.+.+.+ + ..-..+..+|...|++++|+..|+++..
T Consensus 239 ------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 239 ------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred ------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 00000122234456666666666555321 1 1111134456666666666666666554
Q ss_pred CCCCCC-----HHHHHHHHHHHhccccHHHHHHHHHHhHhhcC----------CCCC---hhHHHHHHHHHHhcCCHHHH
Q 047146 420 VGIEPD-----EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN----------LQPQ---TEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 420 ~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A 481 (608)
. .|. ......+..++...|++++|.+.++.+.+... -.|+ ...+..+...+...|++++|
T Consensus 301 ~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 301 H--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred c--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 2 221 12334444455666666666666666554210 0122 12344556666677777777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 482 LDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 482 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+++++++ ...| +...+..+...+...|++++|++.++++++..|+++..+..++..+.+.|++++|+.+++++.+..
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7777766 3334 455666666667777777777777777777777777777777777777777777777777776543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-16 Score=173.08 Aligned_cols=399 Identities=11% Similarity=0.021 Sum_probs=272.1
Q ss_pred HHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCC
Q 047146 89 IIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167 (608)
Q Consensus 89 li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 167 (608)
.+......|+.++ ++++.+..... ..+...+..+..++...|++++|..+++..++.. +.+...+..+...+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 3456678899999 99999987622 2344468888889999999999999999998863 2346677888899999999
Q ss_pred HHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHH
Q 047146 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHR 246 (608)
Q Consensus 168 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 246 (608)
.++|...+++..+..+ .+.. |..+...+...|+.++|+..+++..+. .|+ ...+..+..++...+..+.|...++
T Consensus 99 ~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 99 YDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999776433 3555 888899999999999999999999885 444 4455667777788899999998887
Q ss_pred HHHHccCCCCCch------HHHHHHHHHHHh-----cCCh---HHHHHHHccCCC-----CChh-hH----HHHHHHHHh
Q 047146 247 YITDNHFNLSPDV------FIHNALIDMYLK-----CGNI---PSARKVFDEMPV-----KNVV-SW----NSMIAGLTH 302 (608)
Q Consensus 247 ~~~~~~~~~~p~~------~~~~~li~~~~~-----~g~~---~~A~~~~~~~~~-----~~~~-~~----~~li~~~~~ 302 (608)
.+... |+. .....++..+.. .+++ ++|++.++.+.. |+.. .+ ...+..+..
T Consensus 175 ~~~~~-----p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 175 DANLT-----PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred hCCCC-----HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 66541 121 122233333322 2234 667777776651 2211 11 111345567
Q ss_pred cCChhHHHHHHHHHHhCCCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 047146 303 RGQFKEALDIFRRMQGLGLK-PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381 (608)
Q Consensus 303 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 381 (608)
.|++++|+..|+++.+.+.+ |+. ....+..++...|++++|...++.+.+........
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~-------------------- 308 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADL-------------------- 308 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC--------------------
Confidence 78999999999998876522 322 11123444555555555555555544322110000
Q ss_pred HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccccHHHHHH
Q 047146 382 VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-----------IEPDE---VTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 382 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~ 447 (608)
....+..+..++...|++++|..+++++.... -.|+. ..+..+...+...|+.++|++
T Consensus 309 --------~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 309 --------SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred --------ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 01123333444555555555555555555431 12342 244556677888899999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEP 525 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 525 (608)
.++++.. ..+.+...+..++..+...|++++|++.+++. ...|+ ...+......+...|++++|+.+++++++..|
T Consensus 381 ~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 381 RARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999877 23446778889999999999999999999988 66674 55666777788899999999999999999999
Q ss_pred CCCc
Q 047146 526 EGDG 529 (608)
Q Consensus 526 ~~~~ 529 (608)
+++.
T Consensus 459 d~~~ 462 (765)
T PRK10049 459 QDPG 462 (765)
T ss_pred CCHH
Confidence 9973
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-17 Score=173.51 Aligned_cols=326 Identities=11% Similarity=0.008 Sum_probs=269.7
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHH
Q 047146 224 ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGL 300 (608)
Q Consensus 224 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 300 (608)
-...++..+.+.|+.+.|..+++..+...+. +......++.++...|++++|...|+++. +.+...|..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4556677888999999999999999998655 56666777778888999999999999986 34566788899999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047146 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 380 (608)
.+.|++++|+..+++..+.. +.+...+..+...+...|+++.|...+..+......+.. .+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998852 334567778888999999999999999988766543333 33333 3478899999999
Q ss_pred HHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHH----HHHHHHH
Q 047146 381 GVFRSMKCR----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEE----GCKHFLD 451 (608)
Q Consensus 381 ~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~----a~~~~~~ 451 (608)
..++.+.+. +...+..+...+...|++++|+..++++.+. .| +...+..+...+...|++++ |...+++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999987642 2334455677889999999999999999985 45 45678888899999999986 8999999
Q ss_pred hHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 452 MSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 452 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+.+ ..| +...+..+...+.+.|++++|+..+++. ...| +...+..+..++...|++++|...++++.+..|+++
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 877 345 5778999999999999999999999988 5556 456777788999999999999999999999999988
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
..+..++.++...|++++|...+++..+...+
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 77777889999999999999999999876554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-15 Score=160.64 Aligned_cols=427 Identities=10% Similarity=0.024 Sum_probs=310.4
Q ss_pred HHcCCCccH-HHHHHHHHHCCCCCCce-eHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHH
Q 047146 93 LSNANPLEA-IALYREMLIKGLLPNTY-TLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKA 170 (608)
Q Consensus 93 ~~~~~~~~~-~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 170 (608)
..++|+... ++.|++..+.. |+.. ....++..+...|+.++|...++..+. .-.........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 356788878 88888887653 4431 222777777788999999888888772 111222333334567888899999
Q ss_pred HHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHH
Q 047146 171 VHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITD 250 (608)
Q Consensus 171 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 250 (608)
|.++|+++.+..+. ++..+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999987775443 4566667788888889999999999888764 45555554444444455666668899999988
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC---CChhhH------HHHHHHH-----HhcCC---hhHHHHHH
Q 047146 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV---KNVVSW------NSMIAGL-----THRGQ---FKEALDIF 313 (608)
Q Consensus 251 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~------~~li~~~-----~~~g~---~~~A~~~~ 313 (608)
..++ +...+..++.++.+.|-...|.++..+-+. +...-| ..+++.- ....+ .+.|+.-+
T Consensus 198 ~~P~---n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 198 LAPT---SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred hCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 8654 677888888888999998888888877651 111111 0111100 01112 34566666
Q ss_pred HHHHhC-CCCCChH-----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC
Q 047146 314 RRMQGL-GLKPDDF-----TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387 (608)
Q Consensus 314 ~~m~~~-g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 387 (608)
+.+... +-.|... ...-.+-++...++...++..++.+...+.+....+-.++.++|...+++++|+.++.++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 666542 2224322 2224456778899999999999999998877677788999999999999999999999875
Q ss_pred CC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH--H-HHHHHHHHHhccccHHH
Q 047146 388 CR---------DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-----------EPDE--V-TFVGVLSACSHAGLVEE 444 (608)
Q Consensus 388 ~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~--~-~~~~ll~~~~~~g~~~~ 444 (608)
.+ +......|.-+|...+++++|..+++++.+.-. .||. . .+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 32 233357788999999999999999999987311 2332 2 34455677889999999
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
|++.++++.. .-+-|......+.+.+...|.+.+|++.++.. .+.| +..+......++...+++++|..+.+.+.+
T Consensus 435 Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 435 AQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999976 34458889999999999999999999999877 5667 455677778888999999999999999999
Q ss_pred cCCCCCch
Q 047146 523 FEPEGDGA 530 (608)
Q Consensus 523 ~~p~~~~~ 530 (608)
..|+++.+
T Consensus 513 ~~Pe~~~~ 520 (822)
T PRK14574 513 RSPEDIPS 520 (822)
T ss_pred hCCCchhH
Confidence 99999843
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-15 Score=159.84 Aligned_cols=422 Identities=11% Similarity=-0.045 Sum_probs=290.3
Q ss_pred HHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHh
Q 047146 86 YNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164 (608)
Q Consensus 86 ~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 164 (608)
+...-..+.+.|+++. +..|++..+. .|+...|..+-.++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3345557788999999 9999998864 5777788888888999999999999999998854 2345678889999999
Q ss_pred cCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHH
Q 047146 165 CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI 244 (608)
Q Consensus 165 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 244 (608)
.|++++|..-|........ .+......++.-+.. ..+........+.. +++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 9999999987765322111 111111222221111 22233333332221 112222222222 2111111111111
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHH---HhcCChHHHHHHHccCCC------CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047146 245 HRYITDNHFNLSPDVFIHNALIDMY---LKCGNIPSARKVFDEMPV------KNVVSWNSMIAGLTHRGQFKEALDIFRR 315 (608)
Q Consensus 245 ~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 315 (608)
+....+.... ....+..+...+ ...+++++|.+.|+.... .+...|+.+...+...|++++|+..|++
T Consensus 280 ~~~~~~~~~~---~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 280 LEDSNELDEE---TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhcccccccc---cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111000 001111111111 234678899998887653 2345688888888899999999999999
Q ss_pred HHhCCCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CCh
Q 047146 316 MQGLGLKPD-DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDV 391 (608)
Q Consensus 316 m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 391 (608)
..+. .|+ ...|..+...+...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...|++..+ .+.
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 8875 454 5577788888889999999999999887764 44577888899999999999999999998763 356
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh--------
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT-------- 462 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------- 462 (608)
..|..+...+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|++.|+.... +.|+.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~ 508 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVL 508 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHH
Confidence 77888888999999999999999999874 554 56888899999999999999999999876 23321
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
..++.....+...|++++|.+++++. .+.| +...+..+...+...|++++|...++++.++.+...
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 11222233344579999999999986 5566 445788899999999999999999999998877643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-15 Score=158.69 Aligned_cols=427 Identities=10% Similarity=0.020 Sum_probs=309.7
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcch-HHHH--HHH
Q 047146 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS-WTTL--IQA 196 (608)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l--i~~ 196 (608)
|...|. ..+.|+++.|...+....+........++ .++..+...|+.++|+..+++.. .|+... +..+ ...
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~l 111 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARA 111 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHH
Confidence 333333 46889999999999999886532222345 88899999999999999999954 443333 3333 457
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChH
Q 047146 197 YVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276 (608)
Q Consensus 197 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 276 (608)
+...|++++|+++|+++.+... -+...+..++..+...++.++|.+.++.+.+.. |+...+..++..+...++..
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d----p~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD----PTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC----cchHHHHHHHHHHHhcchHH
Confidence 7888999999999999988642 235666777888899999999999999998773 24445555555555567776
Q ss_pred HHHHHHccCC--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH------HHHHHHHH-----hccCChH
Q 047146 277 SARKVFDEMP--VK-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT------LVCVLNSC-----ANIGWLE 342 (608)
Q Consensus 277 ~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~~~-----~~~~~~~ 342 (608)
+|++.++++. .| +...+..+..++.+.|-...|.++..+-... +.+...- ....++.- ....++.
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 7999999987 33 5667788889999999999998877654321 1111110 11111110 0112233
Q ss_pred H---HHHHHHHHHH-cCCCCc-hhH-HHH---HHHHhHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHH
Q 047146 343 L---GKWVHTYLDK-NHINTD-GFI-GNA---LVDMYAKCGRIDQAFGVFRSMKCR----DVYSYTAMIVGLAIHGKAWK 409 (608)
Q Consensus 343 ~---a~~~~~~~~~-~~~~~~-~~~-~~~---li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~ 409 (608)
. +..-++.+.. .+..|. ... ..+ .+-++.+.|+..++++.|+.+..+ ...+-.++..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 3 3334444443 122232 122 223 344677889999999999999843 23456678899999999999
Q ss_pred HHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcC----------CCCC---hhHHHHHHHH
Q 047146 410 ALDIFSEMSQVGI-----EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN----------LQPQ---TEHYGCMVDL 471 (608)
Q Consensus 410 A~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~ 471 (608)
|+.+++++..... .++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999976431 22333457788899999999999999999987211 0122 2345567888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHH
Q 047146 472 FGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 549 (608)
+...|++.+|++.++++ ...| |......+...+...|.+.+|++.++.+..+.|++..+...++..+...|+|++|..
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999 5556 888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 047146 550 LRKKMKERK 558 (608)
Q Consensus 550 ~~~~m~~~~ 558 (608)
+.+...+..
T Consensus 506 ~~~~l~~~~ 514 (822)
T PRK14574 506 LTDDVISRS 514 (822)
T ss_pred HHHHHHhhC
Confidence 987775443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-15 Score=152.02 Aligned_cols=538 Identities=10% Similarity=0.025 Sum_probs=371.8
Q ss_pred cCCCCchhhhHHHH-HH---------hhcccchhhccCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCC---chH
Q 047146 8 ASGSRYNDINTFQQ-LS---------LLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRG---NEI 73 (608)
Q Consensus 8 ~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~---~~~ 73 (608)
-+|++-.+..+|+. +. .++.+.++-.|+..+.+...+.+..+..+ .+..... |..+-....+ +..
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHH
Confidence 35678888888877 11 12223334445566677777777776654 1221111 2222222222 222
Q ss_pred HHh------hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCC--CCceeHHHHHHHHhccCCcHHHHHHHHHHH
Q 047146 74 ENL------SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLL--PNTYTLPYVLKACWQSQSLRVGQQVHAYSM 144 (608)
Q Consensus 74 A~~------~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 144 (608)
+.. ...+.|++.-|.|-+-|...|+++. +.+...+...-.. .-..+|-.+-+++-..|+++.|...|-...
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 222 4566788889999999999999999 9998888764311 123357788888999999999999998777
Q ss_pred HhCcCCcH--hHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCC----CchHHHHHHHHHHHCCC
Q 047146 145 KTALLSNV--YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMD----YPTEAILSFFDMCQANL 218 (608)
Q Consensus 145 ~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~ 218 (608)
+.. ++. ..+-.|..+|.+.|+++.+...|+.+.... +.+..+.-.|...|...+ ..+.|..++.+..+.-
T Consensus 335 k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 335 KAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred ccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 654 444 345577899999999999999999866543 234555566666666654 3456666666655432
Q ss_pred CCCHhHHHHHHHHhhccCCchHHHHHHHHHH----HccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC-------
Q 047146 219 RPDGMILVIVLSACSKLGDLSLGIKIHRYIT----DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV------- 287 (608)
Q Consensus 219 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 287 (608)
.-|...|..+...+-. ++...+..++..+. ..+-. +.+.+.|.+...+...|+++.|...|.....
T Consensus 411 ~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 3355566666655544 44444466665544 33323 3788899999999999999999999876541
Q ss_pred CCh------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCch
Q 047146 288 KNV------VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFT-LVCVLNSCANIGWLELGKWVHTYLDKNHINTDG 360 (608)
Q Consensus 288 ~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (608)
+|. .+-..+...+-..++.+.|.+.|..+... .|.-.+ |..+.......+...+|...+..+.... ..++
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np 564 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP 564 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc
Confidence 222 12223455566677899999999999886 465543 3333333334577888888888877654 4455
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHH------------cCChHHHHHHHHHHHHCCCC
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMK-----CRDVYSYTAMIVGLAI------------HGKAWKALDIFSEMSQVGIE 423 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~~g~~ 423 (608)
.++..+...|.+...+..|.+-|..+. .+|..+.-+|.+.|.+ .+..++|+++|.+.... .
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--D 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--C
Confidence 666667778988888888888666554 2455665556555542 34567899999998884 4
Q ss_pred C-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHH
Q 047146 424 P-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM----PLVPDAFVWG 498 (608)
Q Consensus 424 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~ 498 (608)
| |...-+.+.-.++..|++.+|..+|..+.+. ......+|-.+.++|..+|++..|++.|+.. .-+.+..+.+
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 4 6667888888899999999999999999984 2345567888999999999999999999987 2234788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-------------------CCChHHHHHHHHHHHhCCC
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS-------------------KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~A~~~~~~m~~~~~ 559 (608)
.|.+++...|.+.+|.+.+..++...|.++..-..++-+..+ .+..++|.++|++|...+-
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998765555544433 2457788889988876554
Q ss_pred c
Q 047146 560 K 560 (608)
Q Consensus 560 ~ 560 (608)
+
T Consensus 801 ~ 801 (1018)
T KOG2002|consen 801 K 801 (1018)
T ss_pred C
Confidence 4
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-15 Score=148.43 Aligned_cols=516 Identities=12% Similarity=0.033 Sum_probs=352.3
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHH-HHHHHHccCCchHHHh------hCCCCCcchHHHHHHHHHcCCCccH----HH
Q 047146 35 KSVGQLKQFHAFIIKTGSPQHQTQIL-YDKIISLSRGNEIENL------SLQNPQVYLYNFIIQCLSNANPLEA----IA 103 (608)
Q Consensus 35 ~~~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~~~~~~----~~ 103 (608)
++...+..++..++...+..-+-+.. +...+.++|..+.|+. .+.+.++.++-.|--.-....+.+. +.
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ 257 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ 257 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence 35667777777766655433333333 6667788888888877 4444333333322222222333333 33
Q ss_pred HHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCc--HhHHHHHHHHHHhcCCHHHHHHHhcccCCC
Q 047146 104 LYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSN--VYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181 (608)
Q Consensus 104 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 181 (608)
++...-... .-|+...+.|-.-+--.|+.+.+..+...++.....-. ...|--+.++|...|+++.|...|.+-.+.
T Consensus 258 ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 258 LLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 333332222 23566777788888888999999998888887642111 234667788899999999999999875543
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC----CchHHHHHHHHHHHccCCCCC
Q 047146 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLG----DLSLGIKIHRYITDNHFNLSP 257 (608)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~p 257 (608)
.....+..+--+...+.+.|+.+.+...|+..... .+-+..|...+...|+..+ ..+.|..++....+..+.
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~--- 412 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV--- 412 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc---
Confidence 33222344556778899999999999999998774 3344567777777777664 456777777777776422
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccC--------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCh-
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEM--------PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL---GLKPDD- 325 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~- 325 (608)
|...|-.+..+|-...-+.. +.+|... ....+...|.+...+...|++.+|...|...... ...+|.
T Consensus 413 d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 77888888877766544333 4444332 2456677889999999999999999999887654 123333
Q ss_pred ----H-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHH
Q 047146 326 ----F-TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAM 397 (608)
Q Consensus 326 ----~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 397 (608)
. +--.+....-..++.+.|.+.|..+.+.. +.-+..|..+.-+-...+...+|...+.... ..++..|.-+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 1 22233444456779999999999988764 1112223333322223366778888888765 3577788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcc------------ccHHHHHHHHHHhHhhcCCCCChhH
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQV-GIEPDEVTFVGVLSACSHA------------GLVEEGCKHFLDMSRVYNLQPQTEH 464 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~------------g~~~~a~~~~~~~~~~~~~~p~~~~ 464 (608)
...+.....+..|.+-|...... ...+|......|.+.|... +..++|+++|..+.+ .-+.|...
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yA 648 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYA 648 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhh
Confidence 88888888888888877666543 2236777777777755432 457788888888876 23447777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCCCchHHHHHHHHHh
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF-E-PEGDGAYILMTNIYSS 540 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-p~~~~~~~~l~~~~~~ 540 (608)
-|.+.-.++..|++.+|..+|... ....+..+|..+...|...|++..|.+.|+...+. . .+++.+...|+.++.+
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 788889999999999999999988 23335678889999999999999999999998866 3 4566788999999999
Q ss_pred CCChHHHHHHHHHHHhCCC
Q 047146 541 KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 541 ~g~~~~A~~~~~~m~~~~~ 559 (608)
.|++.+|.+.+.......+
T Consensus 729 ~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 9999999999888765443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-14 Score=133.05 Aligned_cols=443 Identities=11% Similarity=0.112 Sum_probs=286.5
Q ss_pred HHHcCCCccH-HHHHHHHHHCCCCCCceeHHHH-HHHHhccCCcHHHHHHHHHHHHhCcCCc----HhHHHHHHHHHHhc
Q 047146 92 CLSNANPLEA-IALYREMLIKGLLPNTYTLPYV-LKACWQSQSLRVGQQVHAYSMKTALLSN----VYVFNTLMRLYAVC 165 (608)
Q Consensus 92 ~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~ 165 (608)
-|..+....+ +..|+-+.+...-||.-.+..- -..+.+.+.+..|...+...+..-...+ +...+.+--.+.+.
T Consensus 210 qy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 210 QYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred HhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 4445555555 7777777666666665543322 2235566677777777776665432111 22344444556677
Q ss_pred CCHHHHHHHhcccCCCCCCCCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC------------HhHHHHHH---
Q 047146 166 GLIKAVHKLFHFRQHPQAQRDLVS-WTTLIQAYVKMDYPTEAILSFFDMCQANLRPD------------GMILVIVL--- 229 (608)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------------~~t~~~ll--- 229 (608)
|.+++|..-|+.+.+. .|+..+ +|.+| ++..-|+-++..+.|.+|......|| ....+..+
T Consensus 290 gqy~dainsfdh~m~~--~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEE--APNFIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred ccchhhHhhHHHHHHh--CccHHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 7888887777764432 244433 44444 34445677777777777765332222 22222211
Q ss_pred --HHhhccCCchHHHHHHHHHHH-ccCCCCCchH---------------------HHHHHHHHHHhcCChHHHHHHHccC
Q 047146 230 --SACSKLGDLSLGIKIHRYITD-NHFNLSPDVF---------------------IHNALIDMYLKCGNIPSARKVFDEM 285 (608)
Q Consensus 230 --~~~~~~~~~~~a~~~~~~~~~-~~~~~~p~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~~ 285 (608)
+-.-+.+ -..|++..-...+ ..+-+.|+-. .--.-.--|.+.|+++.|.++++-+
T Consensus 367 ~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 367 HLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111111 1112221111111 0111111110 0011123477889999999988888
Q ss_pred CCCChhhHHH-----HHHHHHh-cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 047146 286 PVKNVVSWNS-----MIAGLTH-RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359 (608)
Q Consensus 286 ~~~~~~~~~~-----li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (608)
...|..+-++ -+--|.+ -.++..|...-+...... .-+......--......|++++|...+.+.....-...
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 7655443222 2222333 335666666665554432 22222222222333457899999999999988765554
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 436 (608)
...|| +.-.+-+.|++++|++.|-.+. ..+....-.+.+.|-...++.+|++++.+.... ++.|+..+..|...|
T Consensus 525 ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dly 602 (840)
T KOG2003|consen 525 EALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLY 602 (840)
T ss_pred HHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHh
Confidence 55554 3345678899999999997765 467788888889999999999999999887763 344677899999999
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGAC-KIHAKVELAE 514 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~~~~~~a~ 514 (608)
-+.|+-.+|.+.+-+--+ -++-+.++...|...|....-+++|+.+|++. -++|+..-|..++..| .+.|++..|.
T Consensus 603 dqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999988776644 35558899999999999999999999999998 6789999999998665 6789999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 515 IVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 515 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
.+++...+..|.+..+...|+.++...|.
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999888875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-13 Score=125.32 Aligned_cols=324 Identities=17% Similarity=0.207 Sum_probs=205.0
Q ss_pred CcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhcc--CCcHHH-HHHHHHHHHhCcCCcHhHHHH
Q 047146 82 QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQS--QSLRVG-QQVHAYSMKTALLSNVYVFNT 157 (608)
Q Consensus 82 ~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 157 (608)
.+++=|.++.... ++.... .-+|+.|+..|+..+...-..+++..+-. .++.-+ .+.|-.|...|- .+..+|
T Consensus 115 ~V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW-- 190 (625)
T ss_pred hhcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc--
Confidence 3445566665544 445555 77888888888777666666666543322 222222 122333333332 222333
Q ss_pred HHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCC
Q 047146 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGD 237 (608)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 237 (608)
|.|.+.+ -+|+ ..+.+..+|..||.++++--..+.|.++|++-.....+.+..+|+.+|.+-.-
T Consensus 191 ------K~G~vAd--L~~E-----~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--- 254 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFE-----TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--- 254 (625)
T ss_pred ------ccccHHH--HHHh-----hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh---
Confidence 3354443 3333 34457789999999999999999999999999888889999999999887543
Q ss_pred chHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH----HccCC----CCChhhHHHHHHHHHhcCChhH-
Q 047146 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV----FDEMP----VKNVVSWNSMIAGLTHRGQFKE- 308 (608)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~~~----~~~~~~~~~li~~~~~~g~~~~- 308 (608)
..++++..+|... .++||..++|+++.+..+.|+++.|.+. +.+|. +|...+|..+|..+++.++..+
T Consensus 255 -~~~K~Lv~EMisq--km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 255 -SVGKKLVAEMISQ--KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred -hccHHHHHHHHHh--hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 3347889999987 6677999999999999999988876543 33343 5777777777777777776543
Q ss_pred HHHHHHHHHhC--C--CC---C-ChHHHHHHHHHHhccCChHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHhHhc
Q 047146 309 ALDIFRRMQGL--G--LK---P-DDFTLVCVLNSCANIGWLELGKWVHTYLDKNH----INTD---GFIGNALVDMYAKC 373 (608)
Q Consensus 309 A~~~~~~m~~~--g--~~---p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~ 373 (608)
|..++.+++.. | ++ | |..-|...+..|.+..+.+.|.+++..+.... +.++ ..-|..+..+.+..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 44444444332 1 22 2 34556677777777777777777776654321 2222 12334455555666
Q ss_pred CCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047146 374 GRIDQAFGVFRSMKC----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428 (608)
Q Consensus 374 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 428 (608)
...+.-...++.|.. |+..+-..++.+..-.|.++-.-+++.++...|..-+...
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 666666666666652 4555556666666666666666666666666654444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-13 Score=125.76 Aligned_cols=405 Identities=13% Similarity=0.097 Sum_probs=193.1
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHH-HHH---HHHccCCchHHHh---------------------------hCCCCCcch
Q 047146 37 VGQLKQFHAFIIKTGSPQHQTQIL-YDK---IISLSRGNEIENL---------------------------SLQNPQVYL 85 (608)
Q Consensus 37 ~~~~~~~~~~~~~~g~~~~~~~~~-l~~---~~~~~g~~~~A~~---------------------------~~~~~~~~~ 85 (608)
+..+.-++.++...|.+-++.+.. |.+ .|-... .--|.. +..++...+
T Consensus 131 vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~-~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et 209 (625)
T KOG4422|consen 131 VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSN-VPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDET 209 (625)
T ss_pred cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCC-CcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchh
Confidence 445566788888888877766655 333 332221 111110 333344445
Q ss_pred HHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHh
Q 047146 86 YNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAV 164 (608)
Q Consensus 86 ~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 164 (608)
+.+||.++++-...+. .++|.+-.....+.+..+||.+|.+-+-. ..+.+..+|+...+.||..++|+++.+.++
T Consensus 210 ~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 210 VSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 5555555555555555 55555555554555555555555543221 124555555555555555555555555555
Q ss_pred cCCHHHH----HHHhcccCCCCCCCCcchHHHHHHHHHhCCCchH-HHHHHHHHH----HCCCCC----CHhHHHHHHHH
Q 047146 165 CGLIKAV----HKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE-AILSFFDMC----QANLRP----DGMILVIVLSA 231 (608)
Q Consensus 165 ~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~----~~~~~p----~~~t~~~ll~~ 231 (608)
.|+++.| .+++.+|++-|++|...+|..+|..+.+.+++.+ +..++.+.. .+.++| |..-|...+..
T Consensus 286 fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 5555433 2334445555555555555555555555554432 222222221 111222 12234445555
Q ss_pred hhccCCchHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 232 CSKLGDLSLGIKIHRYITDNH-FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
|.+..+.+.|.+++....... ....|+. .....-|..+....++....+...
T Consensus 366 c~~l~d~~LA~~v~~ll~tg~N~~~ig~~---------------------------~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLLKTGDNWKFIGPD---------------------------QHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhhcChH---------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544433211 0000000 001123445555666666677777
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 390 (608)
..|+.|.-.-+-|+..+...++++..-.+.++...+++..++..|.........-+...+++.. ..|+
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~ 486 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPL 486 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCC
Confidence 7777776666667777777777777777777777777777666553332222222222222211 0111
Q ss_pred hh---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHH-
Q 047146 391 VY---SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG- 466 (608)
Q Consensus 391 ~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~- 466 (608)
.. -+.....-++. .-.+.....-.+|.+. .-.....+.++-.+.+.|..++|.+++..+.+..+--|-....+
T Consensus 487 tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 11 11111111110 0011111122334433 22333445555556666777777776666654333333333333
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhC
Q 047146 467 --CMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 467 --~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
-+++.-.+......|...++-|
T Consensus 564 m~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 564 MAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444445556666666666655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-11 Score=120.56 Aligned_cols=461 Identities=11% Similarity=0.021 Sum_probs=316.0
Q ss_pred CCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHH----HhCcCCcHhHHHHHHHHHHhcCCHHHH
Q 047146 97 NPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSM----KTALLSNVYVFNTLMRLYAVCGLIKAV 171 (608)
Q Consensus 97 ~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A 171 (608)
..++. -.+++..++. ++-+...|.+..+.=-..|+++....+.++.+ ..|+..+...|-.=...+-+.|..-.+
T Consensus 420 etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 33444 4555555443 44455556555555555566666555554432 335555555555444555555555555
Q ss_pred HHHhcccCCCCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHH
Q 047146 172 HKLFHFRQHPQAQ--RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYIT 249 (608)
Q Consensus 172 ~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 249 (608)
..+......-+++ --..+|+.-...|.+.+.++-|..+|....+. .+-+...|.-....--..|..+....+++.+.
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5544443332322 12345666666677777777777777766653 22234455555555556677777777777777
Q ss_pred HccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChH
Q 047146 250 DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF 326 (608)
Q Consensus 250 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 326 (608)
..-+. ....|.....-+-..|++..|..++...- ..+...|-+-+..-..+.+++.|..+|.+.... .|+..
T Consensus 578 ~~~pk---ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeR 652 (913)
T KOG0495|consen 578 EQCPK---AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTER 652 (913)
T ss_pred HhCCc---chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcch
Confidence 65432 45566666666667788888877776654 234556777777777888888888888777664 46666
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHH
Q 047146 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAI 403 (608)
Q Consensus 327 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 403 (608)
.|.--+..-.-.++.++|.++++..++.- +.-...|..+.+.+-+.++++.|.+.|..=.+ | .+..|-.+...--+
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 66555555556777888888887776652 34456677788888888888888888776543 3 45677777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 483 (608)
.|....|..++++....+ +-|...|...+..-.+.|+.+.|..+..++.+ ..+.+...|..-|.+..+.++-..+..
T Consensus 732 ~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred hcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHH
Confidence 888888888888887763 33566888888888888999999888888887 466677888888888888888777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCC
Q 047146 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563 (608)
Q Consensus 484 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 563 (608)
.+++. ..|+.+.-++...+....+++.|..-|+++++.+|++..+|..+-..+.+.|.-++-.+++.+.....++ -
T Consensus 809 ALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~--h 884 (913)
T KOG0495|consen 809 ALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT--H 884 (913)
T ss_pred HHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--C
Confidence 77776 3477777788888899999999999999999999999999999999999999999999999988765543 3
Q ss_pred ceeEEEECC
Q 047146 564 GCSLVEVYG 572 (608)
Q Consensus 564 ~~~~~~~~~ 572 (608)
|..|..+..
T Consensus 885 G~~W~avSK 893 (913)
T KOG0495|consen 885 GELWQAVSK 893 (913)
T ss_pred CcHHHHHhh
Confidence 334544333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-12 Score=128.56 Aligned_cols=534 Identities=12% Similarity=0.107 Sum_probs=363.6
Q ss_pred HhhcccchhhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHccCCchHHHh------hCCCCCcchHHHHHHHHHcC
Q 047146 23 SLLHQSPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL------SLQNPQVYLYNFIIQCLSNA 96 (608)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~ 96 (608)
.+++.+..+-+-++++.+..+...+++..+....-..+|..+|-..|+.+.+.. ...+.|...|-.+-.-..+.
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 355566666677899999999999999877555555559999999999999998 67788889999999999999
Q ss_pred CCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHH----HHHHHHhcCCHHHH
Q 047146 97 NPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT----LMRLYAVCGLIKAV 171 (608)
Q Consensus 97 ~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A 171 (608)
|.+.. .-.|.+.++.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999 99999998764 23444444445668889999999999999988654333333333 34556667777888
Q ss_pred HHHhcccCC-CCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh----------------------HH---
Q 047146 172 HKLFHFRQH-PQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM----------------------IL--- 225 (608)
Q Consensus 172 ~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----------------------t~--- 225 (608)
.+.++.... ..-..+...+|.++..+.+...++.+......+.....++|.. .|
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 888876433 1223455668999999999999999999998887622222211 11
Q ss_pred -HHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC----CChhhHHHHHHHH
Q 047146 226 -VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV----KNVVSWNSMIAGL 300 (608)
Q Consensus 226 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~ 300 (608)
.-+.-++......+....+..........+.-+...+.-+.++|...|.+.+|+++|..+.. .+...|-.+..+|
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 12233455667777777777777777644433678899999999999999999999998873 3567899999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHhH
Q 047146 301 THRGQFKEALDIFRRMQGLGLKPDD-FTLVCVLNSCANIGWLELGKWVHTYLD--------KNHINTDGFIGNALVDMYA 371 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~ 371 (608)
...|.+++|.+.|++.+.. .|+. -.-.+|-..+.+.|+.++|.+.+..+. ..+..|+..+.....+.|.
T Consensus 460 ~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999999999885 4543 345556667788999999999988843 3345566666666667777
Q ss_pred hcCCHHHHHHHHhhcCC----------------------------------------C----------------------
Q 047146 372 KCGRIDQAFGVFRSMKC----------------------------------------R---------------------- 389 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~----------------------------------------~---------------------- 389 (608)
..|+.++=..+-.+|.. +
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 77777654332222210 0
Q ss_pred ---Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHH---HH-HHHHHHHhccccHHHHHHHHHHhHhhcC
Q 047146 390 ---DV----YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEV---TF-VGVLSACSHAGLVEEGCKHFLDMSRVYN 457 (608)
Q Consensus 390 ---~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~---~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 457 (608)
.. ..+.-++..+++.+++++|+.+...+.+....- +.. .+ ...+.++...+++..|...++.+...++
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 01 123445667888999999999988887653221 221 22 3345567788899999988888877533
Q ss_pred CCCC---hhHHHHHHHHHHh-----------------------------------cCCHHHHHHHHHhC-CCCCCHHHHH
Q 047146 458 LQPQ---TEHYGCMVDLFGR-----------------------------------AGLIREALDLIKSM-PLVPDAFVWG 498 (608)
Q Consensus 458 ~~p~---~~~~~~l~~~~~~-----------------------------------~g~~~~A~~~~~~~-~~~p~~~~~~ 498 (608)
+..+ ...|++..+.+.+ .+.+..|+..+-+. ...||....+
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~n 777 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLIN 777 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHH
Confidence 3322 2344533333222 23444454443333 2334433222
Q ss_pred HHH-HHH----------HHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 499 ALL-GAC----------KIHAKVELAEIVMENLVRFEPE--GDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 499 ~l~-~~~----------~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.++ .++ .++-.+-.+..++.+..++... .-.++..++.+|-..|-..-|..++++..+-.+
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 222 111 1122233455555555554332 345788899999999999999999999986543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-11 Score=118.83 Aligned_cols=441 Identities=10% Similarity=0.047 Sum_probs=349.9
Q ss_pred HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC
Q 047146 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181 (608)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 181 (608)
.+++++..+. -|+.+ .+=++.....+.+.|+-++...++.- +.+...|. +|++..-++.|..+++...+
T Consensus 366 ~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe- 434 (913)
T KOG0495|consen 366 KRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKARE- 434 (913)
T ss_pred HHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHh-
Confidence 4455555543 24433 23445556667777888888887753 23333444 45666778888888887666
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHH----HHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCC
Q 047146 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFD----MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257 (608)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p 257 (608)
.++.+...|-+-...=-.+|+.+.+..++.+ +...|+..+...|..=...|-..|..-.+..+...++..|....-
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 4556888888777777788999988888765 455789999999999999999999999999999999988876543
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 334 (608)
-..+|..-.+.|.+.+.++-|..+|.... ..+...|...+..--..|..++...+|++.... ++-....+....+.
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 46788999999999999999999998776 346677888877777789999999999999886 23344455555566
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHH
Q 047146 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
.-..|++..|..++..+.+... .+..++-+-+..-.....++.|..+|.+.. .++...|.--+......++.++|++
T Consensus 594 ~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 6778999999999999988763 378888899999999999999999999776 4677888887777788899999999
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 047146 413 IFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--P 489 (608)
Q Consensus 413 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 489 (608)
++++..+ .-|+-. .|..+.+.+...++++.|...|..=.+ ..+..+..|-.|.+.=-+.|.+-+|..++++. .
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9999888 477765 778888889999999999988876654 34456788999999999999999999999998 3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------------------------------chHHHHHHHHH
Q 047146 490 LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD------------------------------GAYILMTNIYS 539 (608)
Q Consensus 490 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------------------------------~~~~~l~~~~~ 539 (608)
...+...|...|+.-.+.|+.+.|..++.++++..|.+. .+....+.++.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 333888999999999999999999999999988666653 45667778888
Q ss_pred hCCChHHHHHHHHHHHhCCC
Q 047146 540 SKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~~~~ 559 (608)
...++++|++.|.+..+.+.
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 88888899999888876554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.9e-13 Score=133.26 Aligned_cols=329 Identities=15% Similarity=0.100 Sum_probs=215.0
Q ss_pred hccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHc---cCCCCChhhHHHHHHHHHhcCChhHH
Q 047146 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFD---EMPVKNVVSWNSMIAGLTHRGQFKEA 309 (608)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A 309 (608)
...|++++|..++.++++..+. +...|.+|...|-..|+.+++...+- .+.+.|...|..+..-..+.|.+++|
T Consensus 150 farg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3346666666666666665433 55566666666666666666655442 22344555666666666666666666
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHH----HHHHHHhHhcCCHHHHHHHHhh
Q 047146 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIG----NALVDMYAKCGRIDQAFGVFRS 385 (608)
Q Consensus 310 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~ 385 (608)
.-.|.+.++.. +++-..+.--...|-+.|+...|..-+..+.....+.|..-. ...++.|...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666653 333333344445556666666666666666554433332222 2234555566666777777765
Q ss_pred cCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------------------------CCCHHHHHHHH
Q 047146 386 MKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI---------------------------EPDEVTFVGVL 433 (608)
Q Consensus 386 ~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---------------------------~p~~~~~~~ll 433 (608)
... -+...++.++..|.....++.|.....++..... .++... ..+.
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence 543 2345667777777777777777777776665211 222222 1122
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHHcC
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQP--QTEHYGCMVDLFGRAGLIREALDLIKSM-P--LVPDAFVWGALLGACKIHA 508 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~p~~~~~~~l~~~~~~~~ 508 (608)
-++.+....+....+...... ..+.| +...|.-+.++|...|++.+|+++|..+ . ...+...|.-+...+...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 233344444444444444444 35444 5788999999999999999999999998 2 2236779999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeE
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSL 567 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 567 (608)
.+++|.+.+++++...|++..+...|+.+|.+.|+.++|.+.++.|..-+.+..++++|
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999987444443444444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-15 Score=142.74 Aligned_cols=255 Identities=15% Similarity=0.165 Sum_probs=111.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC-VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR 375 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (608)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3344455555555555543322221233322222 222333445555555555555544322 34445566666 67788
Q ss_pred HHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHh
Q 047146 376 IDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDM 452 (608)
Q Consensus 376 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 452 (608)
+++|.+++...- .++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887653 3566777888888999999999999999987543 2346667888888899999999999999999
Q ss_pred HhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 453 SRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 453 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
.+ ..| +......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 87 356 5778889999999999999988888776 22346677889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
....+++++...|+.++|.+++++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=134.31 Aligned_cols=161 Identities=13% Similarity=0.129 Sum_probs=78.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGC 467 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 467 (608)
.+.+|.++...|.-+++.+.|++.|++..+ +.| ...+|+.+..=+.....+|.|...|+.+.. +.|. -..|..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCchhhHHHHh
Confidence 344555555555555555555555555544 344 233444444444444555555555554432 2221 122333
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChH
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 545 (608)
|.-.|.+.++++.|+-.|+++ .+.| +.+..-.+...+.+.|+.|+|+++++++.-++|.++..-...+.++...++++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 444455555555555555554 4444 33333344444455555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 047146 546 EALKLRKKMK 555 (608)
Q Consensus 546 ~A~~~~~~m~ 555 (608)
+|+..+++++
T Consensus 575 eal~~LEeLk 584 (638)
T KOG1126|consen 575 EALQELEELK 584 (638)
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=115.71 Aligned_cols=421 Identities=12% Similarity=0.095 Sum_probs=260.7
Q ss_pred CCcHHHHHHHHHHHHhCcCCcHhHH-HHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcch----HHHHHHHHHhCCCchH
Q 047146 131 QSLRVGQQVHAYSMKTALLSNVYVF-NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS----WTTLIQAYVKMDYPTE 205 (608)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~ 205 (608)
....+|...++.+++...-|+.-.. -.+-+.+.+...+..|++.++......+..+..+ .|.+-..+.+.|.+++
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 3455555555555555554544322 1223445555666666666655433333222222 3333345667788888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCC----------CCCchHHHHHHHH-----HHH
Q 047146 206 AILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN----------LSPDVFIHNALID-----MYL 270 (608)
Q Consensus 206 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~p~~~~~~~li~-----~~~ 270 (608)
|+..|+...+. .|+..+-..++-++...|+.++..+.|..++..... ..|+....+.-+. -.-
T Consensus 295 ainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 88888777664 477776666666666777888888888777764211 1123332222221 111
Q ss_pred hcC--ChHHHH----HHHccCCCCChh---hHH------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047146 271 KCG--NIPSAR----KVFDEMPVKNVV---SWN------------------SMIAGLTHRGQFKEALDIFRRMQGLGLKP 323 (608)
Q Consensus 271 ~~g--~~~~A~----~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p 323 (608)
+.+ +.++++ ++..-+..|+-. -|. .-...+.++|+++.|+++++-.....-+.
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 111 111111 111111122211 010 01234678888888888888776543222
Q ss_pred ChHHHHH--HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHH--
Q 047146 324 DDFTLVC--VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV-- 399 (608)
Q Consensus 324 ~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-- 399 (608)
-...-+. .+..+....++..|.++-+...... .-+......-.+.-...|++++|.+.+.+....|...-.+|..
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig 531 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG 531 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 2222222 2222233446666666665554332 1111111112223345689999999999998877765555543
Q ss_pred -HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH
Q 047146 400 -GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 400 -~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (608)
.+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++..... -++.|+.+.+-|.+.|-+.|+-
T Consensus 532 lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccch
Confidence 366789999999999988763 334566888888899999999999999988765 4556788999999999999999
Q ss_pred HHHHHHHH-hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 479 REALDLIK-SMPLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 479 ~~A~~~~~-~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..|.+..- ....-| +..+..=|..-|....-++.++..|+++.-+.|+.......++.++.+.|++.+|..+++....
T Consensus 609 sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 609 SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99988644 344444 6666666777788888999999999999999998875555667777899999999999999865
Q ss_pred C
Q 047146 557 R 557 (608)
Q Consensus 557 ~ 557 (608)
+
T Consensus 689 k 689 (840)
T KOG2003|consen 689 K 689 (840)
T ss_pred h
Confidence 4
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=129.18 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=104.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHA 439 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~ 439 (608)
.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.|... .|..+...|.++
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheecc
Confidence 44444444444444444444444322 223444444444445555555555555443 333332 444455556666
Q ss_pred ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 047146 440 GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIV 516 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 516 (608)
++++.|+-.|+++.+ +.| +......+...+.+.|+.++|+++++++ ...| |+..--..+..+...+++++|.+.
T Consensus 503 ek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred chhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence 666666655555543 344 3344455555566666666666666665 2233 333333334445556677777777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 517 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
++++.+.-|++..++..++.+|.+.|+.+.|+.-|.-+.+-+++
T Consensus 580 LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 580 LEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 77777777777777777777777777777777666666554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-11 Score=112.13 Aligned_cols=328 Identities=13% Similarity=0.098 Sum_probs=245.4
Q ss_pred CCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhH-HHH
Q 047146 218 LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW-NSM 296 (608)
Q Consensus 218 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l 296 (608)
..-|..-+-...-.....|..+.|+..+...+.. -+..|.+-+....-..+.+.+..+....+..+...- -.+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR------YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc------CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHH
Confidence 3445444444444566788888899888888765 334455555544445556655555544443322211 224
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHhHhcC
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI--NTDGFIGNALVDMYAKCG 374 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g 374 (608)
..++....+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+.+.+... -.|..+|..++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 456666778889998888888888766665555555566688899999999999998742 124556665543322222
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhH
Q 047146 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
++.---...-.+.+-.+.|...+.+-|.-.++.++|+..|++..+ +.|.. ..|+.+..-|....+...|++.++.++
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222212222233344567778888889999999999999999998 46654 477778888999999999999999998
Q ss_pred hhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 454 RVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 454 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
+ +.| |-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..+..+...+..+..+
T Consensus 392 d---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 392 D---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred h---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 7 445 7889999999999999999999999998 6777 88999999999999999999999999999998888889
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
|..|+++|.+.++.++|...+++..+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999998875
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-11 Score=117.48 Aligned_cols=400 Identities=12% Similarity=0.074 Sum_probs=252.4
Q ss_pred HHhccCCcHHHHHHHHHHHHhCcCCc-HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCch
Q 047146 126 ACWQSQSLRVGQQVHAYSMKTALLSN-VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPT 204 (608)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 204 (608)
-|-+.+.+++|.+.+.+.+.. .|+ +..|+....+|...|+|+++.+--....+-.+ .-+-.+.--.+++-+.|+++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHhhccHH
Confidence 356778888888888888874 466 77788888888888888887776555222111 11222333344555666666
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHH--------HHHHHH-ccCCCCCchHHHHHHHHHHHhcCCh
Q 047146 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKI--------HRYITD-NHFNLSPDVFIHNALIDMYLKCGNI 275 (608)
Q Consensus 205 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~--------~~~~~~-~~~~~~p~~~~~~~li~~~~~~g~~ 275 (608)
+|+.=..- .+++..+....-.-.+.++ .++-.+ .+.+.-|+.....+....+..
T Consensus 201 eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~---- 263 (606)
T KOG0547|consen 201 EALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA---- 263 (606)
T ss_pred HHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc----
Confidence 66543222 2222222222222222222 222222 344444554433333222211
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHh--c---CChhHHHHHHHHHHhCC-CCC-----ChH----HHHHHHH--HHhcc
Q 047146 276 PSARKVFDEMPVKNVVSWNSMIAGLTH--R---GQFKEALDIFRRMQGLG-LKP-----DDF----TLVCVLN--SCANI 338 (608)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~g-~~p-----~~~----t~~~ll~--~~~~~ 338 (608)
+-- ..+..+...+...+..++.. . ..+.+|...+.+-.... ..+ |.. .-..++. -+.-.
T Consensus 264 ~~~----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 264 DPK----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred ccc----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 000 00001111112222222111 1 12444444443321110 011 111 1111111 12345
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 047146 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
|+.-.+.+-++..++....++. .|--+..+|....+.++-.+.|+...+ .|..+|..-.+.+.-.+++++|..=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888877644433 255566788999999999999987763 467788888888888899999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047146 416 EMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD 493 (608)
Q Consensus 416 ~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 493 (608)
+.+. +.|+. ..|..+.-+..+.+.+++++..|++..+ .++..+++|+.....+...++++.|.+.|+.. .+.|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 57754 4777777778889999999999999998 57777899999999999999999999999987 33333
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 494 ---------AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 494 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+.+-.+++..- -.+++..|.++++++.+++|....+|..|+.+-.+.|+.++|+++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444333 34899999999999999999999999999999999999999999999864
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-10 Score=106.27 Aligned_cols=469 Identities=9% Similarity=0.031 Sum_probs=299.9
Q ss_pred CCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHH
Q 047146 78 LQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFN 156 (608)
Q Consensus 78 ~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 156 (608)
...+++..|---+..=.++..... -.++++....=.+.|..=| --+-.=-..|++..|+++|+.-.. ..|+...|.
T Consensus 102 vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~ 178 (677)
T KOG1915|consen 102 VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIFERWME--WEPDEQAWL 178 (677)
T ss_pred cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHH
Confidence 345566666666666666666655 6666666553323232222 112222344667777777776655 457777777
Q ss_pred HHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-C-CCCCHhHHHHHHHHhhc
Q 047146 157 TLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA-N-LRPDGMILVIVLSACSK 234 (608)
Q Consensus 157 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~t~~~ll~~~~~ 234 (608)
+.|+.=.+-..++.|+.+++...- +.|++.+|---.+.=.++|+...+..+|+...+. | -.-+...|.+....-.+
T Consensus 179 sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 179 SFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766442 3466666666666666777777777777666542 1 01112223333333344
Q ss_pred cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHH---ccCC--------CCChhhHHHHHHHHHhc
Q 047146 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF---DEMP--------VKNVVSWNSMIAGLTHR 303 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~---~~~~--------~~~~~~~~~li~~~~~~ 303 (608)
...++.|.-+|...+..-+.. .....|..+...=-+.|+.....+.. +++. .-|-.+|--.+..--..
T Consensus 257 qkE~ERar~iykyAld~~pk~-raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHIPKG-RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence 556666777777666652221 12344544444444445533332221 2222 22556777777777788
Q ss_pred CChhHHHHHHHHHHhCCCCCChH-------HHHHHHHHH---hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh---
Q 047146 304 GQFKEALDIFRRMQGLGLKPDDF-------TLVCVLNSC---ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY--- 370 (608)
Q Consensus 304 g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--- 370 (608)
|+.+...++|++.+.. ++|-.. .|..+=-+| ....+++.+.++++..++ -++....++.-+=-+|
T Consensus 336 g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 336 GDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHH
Confidence 9999999999999876 455321 222222222 356889999999998887 3444555555443334
Q ss_pred -HhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHH
Q 047146 371 -AKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGC 446 (608)
Q Consensus 371 -~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 446 (608)
.++.++..|.+++.... .|...+|...|..-.+.++++.+..++++..+ ..| |..+|......-...|+.+.|.
T Consensus 414 eIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHH
Confidence 57889999999998776 47788888889888999999999999999999 456 5568888888888899999999
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC-----------C
Q 047146 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACK-----IHA-----------K 509 (608)
Q Consensus 447 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~~-----------~ 509 (608)
.+|.-+++...+..-...|.+.|+.=...|.++.|..+++++ ...+-..+|-++...-. +.+ .
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~ 571 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDEN 571 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhH
Confidence 999999885444445667888888889999999999999998 44455567777664433 333 5
Q ss_pred HHHHHHHHHHHHhcCCC--CCchHH----HHHHHHHhCCChHHHHHHHHHHHh
Q 047146 510 VELAEIVMENLVRFEPE--GDGAYI----LMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~--~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...|..+|+.+.....+ +..-.. ..-+.-...|...+...+-.+|++
T Consensus 572 ~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 572 IKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 67889999988764222 122222 333334455666666666666653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-11 Score=121.61 Aligned_cols=430 Identities=10% Similarity=0.042 Sum_probs=241.1
Q ss_pred HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC
Q 047146 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP 181 (608)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 181 (608)
-.++-.|...|+.||.+||..+|.-||..|+.+.|- +|..|.-..++.+..+++.++......++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 467788899999999999999999999999999998 9999988888888899999999988888877664
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHH-HH-------HCCCCCCHhHHHHHHHH--------------hhccCCch
Q 047146 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFD-MC-------QANLRPDGMILVIVLSA--------------CSKLGDLS 239 (608)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~-------~~~~~p~~~t~~~ll~~--------------~~~~~~~~ 239 (608)
.|...+|..|..+|.+.|+... ++..++ |. ..|+..-..-+-..+.+ ....|-++
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 4778899999999999998765 222222 22 12222111112111122 22223333
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHHHh-cCChHHHHHHHccCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047146 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLK-CGNIPSARKVFDEMP-VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317 (608)
Q Consensus 240 ~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 317 (608)
.+.+++..+...... .+... .++-... ...+++-..+..... .+++.++.+.+.+-..+|+.+.|..++.+|.
T Consensus 157 qllkll~~~Pvsa~~---~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWN---APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHhhCCccccc---chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 333333322111100 00000 0111111 111222222222222 2566666666666666666666666666666
Q ss_pred hCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc------------------------
Q 047146 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC------------------------ 373 (608)
Q Consensus 318 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------------------ 373 (608)
+.|++.+..-|-.++-+ .++...++.+...|...|+.|+..++.-.+-.+...
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 66666555555555443 555555555555666666655555554333333332
Q ss_pred ----------------------------------------------CCHHHHHHHHhhcCCC-------ChhHHHHHHHH
Q 047146 374 ----------------------------------------------GRIDQAFGVFRSMKCR-------DVYSYTAMIVG 400 (608)
Q Consensus 374 ----------------------------------------------g~~~~A~~~~~~~~~~-------~~~~~~~li~~ 400 (608)
|+-++.+.+-..+..| ++..|..++.-
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 2222222222222211 22223222222
Q ss_pred HHHcCC----------------------hHHHHHHHHHHHHCCCCCCHH----------------------------HHH
Q 047146 401 LAIHGK----------------------AWKALDIFSEMSQVGIEPDEV----------------------------TFV 430 (608)
Q Consensus 401 ~~~~~~----------------------~~~A~~~~~~m~~~g~~p~~~----------------------------~~~ 430 (608)
|.+.-+ ..+..++... ..||.. .-+
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 211100 0000000000 122211 111
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP-----LVPDAFVWGALLGACK 505 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~ 505 (608)
.++..|...-+..++...-+.... .-+ ...|..||+.+......+.|..+.++.. +.-|..-+..+.....
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 222222222222333222222221 111 2567888999999999999999888872 2335556777888888
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 506 IHAKVELAEIVMENLVRF---EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
+.+....+..+++.+.+. .|........+.+.....|+.+...++.+-+...|+.-
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 889999999999888764 23334566677788888999999999999988888766
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-11 Score=123.15 Aligned_cols=287 Identities=14% Similarity=0.028 Sum_probs=181.6
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHH
Q 047146 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
.|+++.|.+.+....+..-.| ...|.....+....|+++.+.+.+..+.+...+. ...........+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~--~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADND--QLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHCCCHHHHH
Confidence 567777776665543321111 1223333334466777777777777776542221 1122223355667777777777
Q ss_pred HHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 047146 280 KVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356 (608)
Q Consensus 280 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (608)
..++++. +.+......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 7776665 234556677777777888888888888888776543221 1111000
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 433 (608)
..+..++.......+.+...++++.+++ .++.....+...+...|+.++|.+++++..+. .|+.... ++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 0112222323333455666666666653 46677777888888888888888888888773 4454222 23
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 512 (608)
.+....++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334558888888888887762 3345667778888888888888888888887 677888888888888888888888
Q ss_pred HHHHHHHHHhc
Q 047146 513 AEIVMENLVRF 523 (608)
Q Consensus 513 a~~~~~~~~~~ 523 (608)
|.+++++...+
T Consensus 380 A~~~~~~~l~~ 390 (398)
T PRK10747 380 AAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHhh
Confidence 88888888765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-11 Score=119.90 Aligned_cols=289 Identities=14% Similarity=0.030 Sum_probs=150.7
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHH
Q 047146 199 KMDYPTEAILSFFDMCQANLRPDGM-ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277 (608)
Q Consensus 199 ~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 277 (608)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+....+..++. ...+.......+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~--~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND--NILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHHHCCCHHH
Confidence 466777777776665443 23322 23333455556677777777776665542221 22233334556666666666
Q ss_pred HHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 047146 278 ARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354 (608)
Q Consensus 278 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (608)
|...++.+. +.+...+..+...+.+.|++++|.+.+..+.+.++. +...+..+-.
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~--------------------- 229 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ--------------------- 229 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH---------------------
Confidence 666666654 224445556666666666666666666666665432 2211111000
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF-- 429 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-- 429 (608)
..+..++..-......+...+.++..+. .+...+..+...+...|++++|.+++++..+. .||....
T Consensus 230 ------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~ 301 (409)
T TIGR00540 230 ------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISL 301 (409)
T ss_pred ------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchh
Confidence 0001111111122233445555555553 36777777788888888888888888888774 4444321
Q ss_pred HHH-HHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHH
Q 047146 430 VGV-LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS--M-PLVPDAFVWGALLGACK 505 (608)
Q Consensus 430 ~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~ 505 (608)
..+ .-.....++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 111 1112233555666666655554211112113444555666666666666666662 2 44555555555556666
Q ss_pred HcCCHHHHHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLV 521 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~ 521 (608)
+.|+.++|.+++++..
T Consensus 382 ~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSL 397 (409)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666665543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.1e-11 Score=117.49 Aligned_cols=275 Identities=11% Similarity=0.048 Sum_probs=191.8
Q ss_pred cCChHHHHHHHccCCCC--Chhh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH--HHHHHHhccCChHHHHH
Q 047146 272 CGNIPSARKVFDEMPVK--NVVS-WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV--CVLNSCANIGWLELGKW 346 (608)
Q Consensus 272 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 346 (608)
.|+++.|++.+...... ++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666654432 1222 222233335667777777777777653 44543322 22345566777777777
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC---h--------hHHHHHHHHHHHcCChHHHHHHHH
Q 047146 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD---V--------YSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.. . ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777776655 4455666777788888888888887777776421 1 133344444445556667777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 047146 416 EMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-D 493 (608)
Q Consensus 416 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 493 (608)
.+... .+.+......+..++...|+.++|.+++++..+ .+|+.... ++.+....++.+++++..+.. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76543 344677888899999999999999999998876 34555322 233334569999999999888 5566 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+..+.++...|...+++++|...|+++.+..|++. .+..++.++.+.|+.++|..++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56778888999999999999999999999999975 678999999999999999999998754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-10 Score=107.87 Aligned_cols=259 Identities=14% Similarity=0.014 Sum_probs=206.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMY 370 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 370 (608)
........-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+-..+++.- |..+.+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 334444555777899999999999998864 5666666666777778888777666666665543 55677788888888
Q ss_pred HhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHH
Q 047146 371 AKCGRIDQAFGVFRSMKCRD---VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGC 446 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~ 446 (608)
.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. -|.. ..+.-+.--|.+.++++.|.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHH
Confidence 88899999999998766433 478999999999999999999999888763 3332 23444455688899999999
Q ss_pred HHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCC----CHHHHHHHHHHHHHcCCHHHHHHH
Q 047146 447 KHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-----PLVP----DAFVWGALLGACKIHAKVELAEIV 516 (608)
Q Consensus 447 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p----~~~~~~~l~~~~~~~~~~~~a~~~ 516 (608)
+.|..+.. +.| |+...+-+.-.....+.+.+|..+|+.. .+.+ =..+++.|..+|.+.+.+++|+..
T Consensus 401 ~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999854 555 6778888888888889999999999876 1112 234677788899999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 517 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+++++.+.|.+..++.+++-+|...|+++.|...|.+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998863
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-09 Score=103.22 Aligned_cols=416 Identities=10% Similarity=0.049 Sum_probs=220.2
Q ss_pred ccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHH
Q 047146 129 QSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAIL 208 (608)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 208 (608)
..++...|+.+|+..+... ..+...|-..+.+=.++..+..|+.+++......|..|. .|-.-+..=-..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 3455666666666666543 244555666666666666777777777664443333232 23333333334566666666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC-
Q 047146 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV- 287 (608)
Q Consensus 209 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 287 (608)
+|++..+ ..|+...|.+.++.-.+.+.++.|..+++..+-. .|++..|--....=-++|....|..+|+...+
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~----HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV----HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee----cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 6666655 4566666666666666666666666666665533 34666666666666666666666666665541
Q ss_pred -----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHH-------
Q 047146 288 -----KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD--DFTLVCVLNSCANIGWLELGKWVHTYLDK------- 353 (608)
Q Consensus 288 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~------- 353 (608)
.+...+++...--.++..++.|.-+|+-.+.. ++.+ ...|......--+-|+........-.-.+
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 11223333333333455566666666655554 1212 12233333222334444433333211110
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CCh---hHHHHHHHH--------HHHcCChHHHHHHHHHHHHC
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDV---YSYTAMIVG--------LAIHGKAWKALDIFSEMSQV 420 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~--------~~~~~~~~~A~~~~~~m~~~ 420 (608)
..-+.|-.++--.++.-...|+.+...++|++... |.. ..|...|-. -....+.+.+.++|+...+
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 11133334444455555555666666666665542 111 122222111 1234566666666666665
Q ss_pred CCCC-CHHHHHHHHHH----HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 047146 421 GIEP-DEVTFVGVLSA----CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-D 493 (608)
Q Consensus 421 g~~p-~~~~~~~ll~~----~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 493 (608)
+-| ...||.-+=-. -.++.++..|.+++..++ |.-|-..++...|..=.+.+.++....++++. ...| |
T Consensus 395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 333 33344433222 234556666666666553 45566666666666666666666666666665 4445 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD--GAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..+|......-...|+.+.|..+|+-++....-+. ..|-..++.-...|.++.|..+++++.++.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 55666666666666666666666666654422211 245555666666666666666666666544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-11 Score=121.14 Aligned_cols=284 Identities=12% Similarity=0.057 Sum_probs=181.1
Q ss_pred HhcCCHHHHHHHhcccCCCCCCCCc-chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh--HHHHHHHHhhccCCch
Q 047146 163 AVCGLIKAVHKLFHFRQHPQAQRDL-VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM--ILVIVLSACSKLGDLS 239 (608)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~ 239 (608)
...|+++.|.+.+....+.. |+. ..+-....++.+.|+++.|.+.+.+..+.. |+.. ........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 45799999999998744432 332 233444577788999999999999987643 5543 3334577788899999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHH----HHHHhcCChhHHHHH
Q 047146 240 LGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK---NVVSWNSMI----AGLTHRGQFKEALDI 312 (608)
Q Consensus 240 ~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li----~~~~~~g~~~~A~~~ 312 (608)
.|...++.+.+..+. +..+...+..+|...|++++|.+.+..+.+. +...+..+- .+....+..++..+.
T Consensus 171 ~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998755 6788999999999999999999999888743 332232111 111222222222333
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC
Q 047146 313 FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD 390 (608)
Q Consensus 313 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 390 (608)
+..+.+.. |+ ..+.++..+..+...+...|+.++|.+++++..+ ||
T Consensus 248 L~~~~~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 248 LLNWWKNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD 295 (409)
T ss_pred HHHHHHHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Confidence 33333321 10 0012344445555666666666666666665543 22
Q ss_pred hhH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhH
Q 047146 391 VYS---YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE---VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH 464 (608)
Q Consensus 391 ~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 464 (608)
... ...........++.+.+.+.+++..+. .|+. ....++...|.+.|++++|.+.|+.... ....|+...
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~ 372 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDAND 372 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHH
Confidence 221 111112223345667777777776663 5544 3455677778888888888888875333 345677777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
+..+...+.+.|+.++|.+++++.
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778888888888888888877764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-09 Score=102.28 Aligned_cols=156 Identities=14% Similarity=0.059 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 047146 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAI 403 (608)
Q Consensus 327 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 403 (608)
|...+..-|+-.++.++|...|+...+.+ +.....|+.+.+-|....+...|..-++...+ .|-..|-.+.++|.-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 33334444444444444444444444443 22233444445555555555555555554332 344455555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 482 (608)
.+.+.-|+-.|++..+ ++| |...|.+|..+|.+.++.++|++.|..+.. .-+.+...+..|.++|-+.++.++|.
T Consensus 411 m~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred hcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHH
Confidence 5555555555555555 344 334555555555555555555555555544 11223344555555555555555555
Q ss_pred HHHHh
Q 047146 483 DLIKS 487 (608)
Q Consensus 483 ~~~~~ 487 (608)
..|+.
T Consensus 487 ~~yek 491 (559)
T KOG1155|consen 487 QYYEK 491 (559)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-13 Score=127.09 Aligned_cols=253 Identities=15% Similarity=0.100 Sum_probs=71.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHH-HHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhc
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILV-IVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 272 (608)
...+.+.|++++|++++++......+|+...|- .+...+...++.+.|.+.++.+...+.. +...+..++.. ...
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccc-ccc
Confidence 455556666666666664443332123333332 2333444566666666666666655422 34445555555 566
Q ss_pred CChHHHHHHHccCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChHHHHHHHHHHhccCChHHHHHHHH
Q 047146 273 GNIPSARKVFDEMP--VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWLELGKWVHT 349 (608)
Q Consensus 273 g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 349 (608)
+++++|.+++...- .++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.+.|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666665442 2344455566666666677777776666655422 23344444445555555555555555555
Q ss_pred HHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-C
Q 047146 350 YLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-D 425 (608)
Q Consensus 350 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~ 425 (608)
.+.+.. +.+..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|++++|+.+|++.... .| |
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccc
Confidence 555543 2234445555556666666665554444432 234455556666666666666666666665553 33 4
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhH
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
..+...+..++...|+.++|.++..++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4455556666666666666666555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-10 Score=103.33 Aligned_cols=287 Identities=14% Similarity=0.071 Sum_probs=192.2
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHH
Q 047146 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
.|+|.+|..+..+-.+.+-.| ...|..-..+.-..|+.+.+-+++.++.+...+ ++..+.-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~--~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD--DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHhCCCchhHH
Confidence 577777777777765554332 234555556666777777777777777766222 25666777777777778777776
Q ss_pred HHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 047146 280 KVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356 (608)
Q Consensus 280 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (608)
.-.+++. ..++........+|.+.|++.....++.+|.+.|+-.+...-..
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-------------------------- 227 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-------------------------- 227 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH--------------------------
Confidence 6655443 55677778888888888888888888888888876554432110
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL 433 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 433 (608)
...+++.+++=....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ...
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 11223334443333344444444555555 235666667777788888888888888888887777662 222
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 512 (608)
-.+.+.++...-++..+.-.+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|.-+..++.+.|+.++
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 345666777666666666666444444 67778888888888888888888876 777888888888888888888888
Q ss_pred HHHHHHHHHhc
Q 047146 513 AEIVMENLVRF 523 (608)
Q Consensus 513 a~~~~~~~~~~ 523 (608)
|.+..++.+.+
T Consensus 380 A~~~r~e~L~~ 390 (400)
T COG3071 380 AEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHH
Confidence 88888777643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-10 Score=100.82 Aligned_cols=270 Identities=14% Similarity=0.147 Sum_probs=171.8
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCC--chHHHHHHHHHHHhcCChHH
Q 047146 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP--DVFIHNALIDMYLKCGNIPS 277 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 277 (608)
+.++++|.++|-+|.+.. +-+..+-.++.+.|.+.|..+.|+++|..+.++. +.+- -......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 578999999999998742 2234456688888999999999999999998862 2210 12345567778888999999
Q ss_pred HHHHHccCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 047146 278 ARKVFDEMPVKN---VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN 354 (608)
Q Consensus 278 A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (608)
|+++|..+.+.+ ......|+..|.+..+|++|++.-+++...+-.+..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 999998887533 335667888899999999999999888876544433221
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD---VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVG 431 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 431 (608)
...|.-|...+....+.+.|...+.+..+.| +..--.+...+...|+++.|++.++...+.+..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1122334444445555666666665554322 22222334556666777777777777766543333446666
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 047146 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS-MPLVPDAFVWGALLGACK 505 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~ 505 (608)
|..+|.+.|+.+++...+..+.+ ..+....-..+.+.-....-.+.|...+.+ +.-+|+...+..++....
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 66777777777777777766655 233333334444444444445555544433 355677777777776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-10 Score=101.57 Aligned_cols=309 Identities=14% Similarity=0.107 Sum_probs=202.4
Q ss_pred cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC-CChh------hHHHHHHHHHhcCChh
Q 047146 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV-KNVV------SWNSMIAGLTHRGQFK 307 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~ 307 (608)
.++.++|.+.|-+|.+.... +..+.-+|.+.|-+.|..|.|+++-..+.. ||.. ..-.|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 35677788888777775433 556667777888888888888887776653 3321 2334555566777777
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC
Q 047146 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387 (608)
Q Consensus 308 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 387 (608)
.|+.+|..+.+.| ..-......++..|-...+|++|+.+-..+.+.+-.+... -+.
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIA-------------------- 180 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIA-------------------- 180 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHH--------------------
Confidence 7777777776643 1222334444444444444444444444433332111110 111
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHH
Q 047146 388 CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG 466 (608)
Q Consensus 388 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 466 (608)
..|.-+...+....+.+.|..++++..+. .|+.+ .-..+.......|+++.|.+.++.+.+. +..--..+..
T Consensus 181 ----qfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~ 253 (389)
T COG2956 181 ----QFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLE 253 (389)
T ss_pred ----HHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHH
Confidence 23455666677788999999999999885 55544 4445667789999999999999999883 3333467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH--hCCC
Q 047146 467 CMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS--SKNR 543 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~ 543 (608)
.|..+|...|+.++....+.++ ...+....-..+...-....-.+.|...+.+-+...|+-...|..+-.-.. ..|.
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 9999999999999999998887 555666665666655556666778888888888888886544443333333 3466
Q ss_pred hHHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 047146 544 WKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEF 577 (608)
Q Consensus 544 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 577 (608)
+.+...+++.|....++..|.+.-...+=..|+|
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 8999999999998888777765333333344444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-10 Score=107.39 Aligned_cols=198 Identities=13% Similarity=0.031 Sum_probs=164.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
....+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667788889999999999999987653 346778888899999999999999999998853 3345677788888
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 513 (608)
+...|++++|.+.+..+.+..........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999873222334567778889999999999999999987 4444 566788888999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998887643
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-08 Score=100.33 Aligned_cols=403 Identities=13% Similarity=0.066 Sum_probs=261.1
Q ss_pred CcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh-HH
Q 047146 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM-IL 225 (608)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-t~ 225 (608)
.+..|..+|..|.-+..++|+++.+.+.|++... +.-.....|+.+-..|...|....|+.+++.-....-.|+.. .+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3567888999999999999999999999998543 233455679999999999999999999998876544335443 34
Q ss_pred HHHHHHhh-ccCCchHHHHHHHHHHHcc--CCCCCchHHHHHHHHHHHhc-----------CChHHHHHHHccCCC---C
Q 047146 226 VIVLSACS-KLGDLSLGIKIHRYITDNH--FNLSPDVFIHNALIDMYLKC-----------GNIPSARKVFDEMPV---K 288 (608)
Q Consensus 226 ~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~---~ 288 (608)
...-+.|. +.+.++++...-.+++... ....-....+..+.-+|... ....++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444554 5677777777777666621 11111334444444444432 123345556665532 2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCchhHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK-NHINTDGFIGNALV 367 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li 367 (608)
|+.+-..+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++..|..+.+.... .|...... ..-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~--~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM--DGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc--hhhh
Confidence 33332333344677888999999999998876567778888888888888899999888776543 22111000 0111
Q ss_pred HHhHhcCCHHHHHHHHhhcC------------------------------C-CC-hhHHHHHHHHHHHcCChHHHHHHHH
Q 047146 368 DMYAKCGRIDQAFGVFRSMK------------------------------C-RD-VYSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~------------------------------~-~~-~~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
+.-...++.++|......+. + .+ +.++..+..-... +...+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc
Confidence 12222445555443332221 0 01 1122222111111 0000000000
Q ss_pred HHHHCCCCCCH--------HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047146 416 EMSQVGIEPDE--------VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487 (608)
Q Consensus 416 ~m~~~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (608)
|...-+.|.. ..|......+.+.+..++|...+.++.. ...-....|......+...|..++|.+.|..
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 1111122222 2344555668888999999888888765 2333667788888899999999999999888
Q ss_pred C-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 488 M-PLVPD-AFVWGALLGACKIHAKVELAEI--VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 488 ~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
. .+.|+ +.+..++...+...|+...|.. ++..+.+.+|.++.+|..++.++.+.|+.+.|...|....+-
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7 67774 5688889999999999888888 999999999999999999999999999999999999988653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.2e-09 Score=96.90 Aligned_cols=277 Identities=11% Similarity=0.052 Sum_probs=187.6
Q ss_pred cCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHH
Q 047146 272 CGNIPSARKVFDEMPV---KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVH 348 (608)
Q Consensus 272 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 348 (608)
.|++.+|++...+-.+ .....|..-+.+-.+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666655432 1223333444455556666666666666655322333344444445556666666666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047146 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR-----------DVYSYTAMIVGLAIHGKAWKALDIFSEM 417 (608)
Q Consensus 349 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~~~~~m 417 (608)
..+.+.+ +-++.+.....++|.+.|++.....++..+.+. ...+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6665555 334455566777777777777777777777643 1246777777776666666666677766
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 047146 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAF 495 (608)
Q Consensus 418 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 495 (608)
-.. .+-+...-.+++.-+..+|+.++|.++.++..+ .+..|+.. .+ -.+.+-++.+.-++..+.. ...| ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 544 455666777778889999999999999999988 46666621 11 2234556665555555444 2222 457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+.+|...|.+.+.+.+|...|+.+.+..|+.. .|..++.++.+.|+..+|.+.+++..-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 888999999999999999999999999998874 999999999999999999999998763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-09 Score=100.15 Aligned_cols=278 Identities=13% Similarity=0.049 Sum_probs=209.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPV---KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS 334 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 334 (608)
+..+.....+-+...+++.+..++++.+.+ .+...+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 666777777888888999999988888764 34456666777888888888888877788775 35556788888888
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 047146 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~ 411 (608)
|...|..++|++.+......... -...|-...+.|+-.|.-+.|+..+....+ .....+--+..-|.+.++..-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 88889999999999887654422 234567788888888998988887765432 11111222344577889999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhc-CCCC----ChhHHHHHHHHHHhcCCHHHHHHHH
Q 047146 412 DIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY-NLQP----QTEHYGCMVDLFGRAGLIREALDLI 485 (608)
Q Consensus 412 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (608)
++|.+... +-| |+..++-+.-.....+.+.+|..+|+.....- .+.+ ...+++.|..+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999887 566 45577777777777899999999999887411 1111 2346788999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 486 KSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 486 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
+.. ...| |..++.++.-.+...|+++.|...|.+++.+.|++..+-..|..+..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 987 3334 88889999999999999999999999999999999766555554443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-12 Score=83.42 Aligned_cols=50 Identities=30% Similarity=0.478 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 047146 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234 (608)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 234 (608)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-09 Score=109.12 Aligned_cols=252 Identities=10% Similarity=0.070 Sum_probs=151.3
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCC
Q 047146 209 SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK 288 (608)
Q Consensus 209 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 288 (608)
++..+...|+.|+..||..++.-|+..|+++.|- +|..|.-...++ +..+++.++......++.+.+. +|
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv--~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPV--REGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccc--cchhHHHHHhcccccccccCCC-------CC
Confidence 4556666777777777777777777777777777 777777665565 6677777777777777766555 56
Q ss_pred ChhhHHHHHHHHHhcCChhH---HHHHHHHHHh----CCCCCChHHHHHHHHH--------------HhccCChHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKE---ALDIFRRMQG----LGLKPDDFTLVCVLNS--------------CANIGWLELGKWV 347 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~----~g~~p~~~t~~~ll~~--------------~~~~~~~~~a~~~ 347 (608)
...+|..|..+|...||... +.+.+..... .|+.....-+-..+++ ....|-++.+.++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777543 2222222211 1222111111111111 1222333333333
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhH-hcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYA-KCGRIDQAFGVFRSMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 425 (608)
+..+....... +... .++-.. -...+++-..+..... .++..+|.+.+..-...|+.+-|..++.+|.+.|+..+
T Consensus 162 l~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 162 LAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 32221111000 0000 111111 1122333333333333 37888888888888888999999999999999988888
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL 477 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 477 (608)
.+-|..++-+ .++...++.+++.|.. .|+.|+.+|+.-.+-.+.+.|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 8877777765 6777777777777777 6888988888777766666554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-07 Score=88.05 Aligned_cols=286 Identities=12% Similarity=0.022 Sum_probs=202.3
Q ss_pred cCCchHHHHHHHHHHHc-cCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhH---HHHHHHHHhcCChhHHH
Q 047146 235 LGDLSLGIKIHRYITDN-HFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSW---NSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~ 310 (608)
.++-..+.+.+-.+... -+.. |+.....+..++...|+.++|+..|++...-|+.+. ....-.+.+.|+++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~--NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRC--NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCc--cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444444444333332 1233 888999999999999999999999998774443332 22333456788888888
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC--C
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK--C 388 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~ 388 (608)
.+...+.... +-+...|..-....-..++++.|..+-+..++.+. .+...+-.-..++...|+.++|.-.|+... .
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 8888776532 12223333333344456777778777777766542 233333334556778899999998888654 3
Q ss_pred -CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-cccHHHHHHHHHHhHhhcCCCCC-hhH
Q 047146 389 -RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVL-SACSH-AGLVEEGCKHFLDMSRVYNLQPQ-TEH 464 (608)
Q Consensus 389 -~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~-~g~~~~a~~~~~~~~~~~~~~p~-~~~ 464 (608)
-+..+|.-++..|...|++.+|..+-+..... +..+..++..+. ..|.. ..--++|.+++++..+ +.|+ ...
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~A 440 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPA 440 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHH
Confidence 37789999999999999999998887776653 344556666653 33433 3345778888887754 5675 556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.+.+...+...|..++++.++++. ...||....+.|...+...+.+.+|...|..+++++|.+.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 678888899999999999999987 7788999999999999999999999999999999999985
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-07 Score=89.74 Aligned_cols=433 Identities=14% Similarity=0.118 Sum_probs=254.2
Q ss_pred HHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHH--HHHHH--Hhc
Q 047146 91 QCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT--LMRLY--AVC 165 (608)
Q Consensus 91 ~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~~~ 165 (608)
.-+..++++++ +....++...+ +-+...+..-+-++.+.+.+++|..+.+ ..+. ..+++. +=.+| -+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 44556677777 77777777654 3345566677777788888888874433 2221 112222 23444 467
Q ss_pred CCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCCchHHHHH
Q 047146 166 GLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP-DGMILVIVLSACSKLGDLSLGIKI 244 (608)
Q Consensus 166 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~ 244 (608)
+..++|...++. ..+-|..+...-...+.+.|++++|+++|+.+.+.+..- +...-..++.+-.. ..+
T Consensus 93 nk~Dealk~~~~----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~--- 161 (652)
T KOG2376|consen 93 NKLDEALKTLKG----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV--- 161 (652)
T ss_pred ccHHHHHHHHhc----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH---
Confidence 889999998884 222233355556677888999999999999997765321 11122222222111 111
Q ss_pred HHHHHHccCCCCC--chHHHHHHHHHHHhcCChHHHHHHHccCC--------CCCh-----h-----hHHHHHHHHHhcC
Q 047146 245 HRYITDNHFNLSP--DVFIHNALIDMYLKCGNIPSARKVFDEMP--------VKNV-----V-----SWNSMIAGLTHRG 304 (608)
Q Consensus 245 ~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~~g 304 (608)
...+.. +..| +-..+-.....+...|++.+|+++++... ..|. . .--.|..++...|
T Consensus 162 --~~~q~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 162 --QLLQSV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred --HHHHhc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 112211 1111 12222233445677899999999998762 1111 1 2234556777889
Q ss_pred ChhHHHHHHHHHHhCCCCCChHHHHHHHH---HHhccCChHH--H------------HHHHHHHHHcCCCCchhHHHHHH
Q 047146 305 QFKEALDIFRRMQGLGLKPDDFTLVCVLN---SCANIGWLEL--G------------KWVHTYLDKNHINTDGFIGNALV 367 (608)
Q Consensus 305 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~--a------------~~~~~~~~~~~~~~~~~~~~~li 367 (608)
+.++|..++...+... .+|......... +...-.++.. . ......+.... ......-+.++
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL 316 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALL 316 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999998875 455432222211 1211111111 0 11111111100 00111113444
Q ss_pred HHhHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccH
Q 047146 368 DMYAKCGRIDQAFGVFRSMKCRD-VYSYTAMIVGLA--IHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSHAGLV 442 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~ 442 (608)
.+|. +..+.+.++-..++... ...+.+++.... +...+.++.+++...-+. .|.. ......+......|++
T Consensus 317 ~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 317 ALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCH
Confidence 4443 55677777777776433 344555554432 233577788888877664 4443 4555566678889999
Q ss_pred HHHHHHHH--------HhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHH
Q 047146 443 EEGCKHFL--------DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-----PLVPDAF----VWGALLGACK 505 (608)
Q Consensus 443 ~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~ 505 (608)
+.|.+++. .+.+ .+. .+.+...++..+.+.++.+.|..++.+. ...+... +|.-+...-.
T Consensus 393 ~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 99999998 4433 233 3455667888888888877777777665 1122223 3333444456
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
++|+.++|..+++++.+.+|++..+...++.+|++.. .+.|..+=+.+
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 7899999999999999999999999999999998774 46666654443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-06 Score=87.01 Aligned_cols=157 Identities=14% Similarity=0.067 Sum_probs=96.6
Q ss_pred hhHHH-HHHHHHccCCchHHHh-------hCCCC-CcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHH
Q 047146 56 QTQIL-YDKIISLSRGNEIENL-------SLQNP-QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLK 125 (608)
Q Consensus 56 ~~~~~-l~~~~~~~g~~~~A~~-------~~~~~-~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~ 125 (608)
+.++. ..+..-+.|++..-+. .+|.- --..|...|......+-++. +.+|++..+- ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 34444 6666666776655444 44422 23468888887777777777 8888887653 2233566677
Q ss_pred HHhccCCcHHHHHHHHHHHHhC------cCCcHhHHHHHHHHHHhcCCH---HHHHHHhcccCCCCCCCCcchHHHHHHH
Q 047146 126 ACWQSQSLRVGQQVHAYSMKTA------LLSNVYVFNTLMRLYAVCGLI---KAVHKLFHFRQHPQAQRDLVSWTTLIQA 196 (608)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~ 196 (608)
-++..+++++|.+.++..+... .+.+-..|.-+.+..++.-+. -....+++.+...-...-...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7778888888887777665332 233445566666665554332 2334445553332222233458888888
Q ss_pred HHhCCCchHHHHHHHHHHHC
Q 047146 197 YVKMDYPTEAILSFFDMCQA 216 (608)
Q Consensus 197 ~~~~g~~~~a~~~~~~m~~~ 216 (608)
|.+.|.+++|.++|++....
T Consensus 258 YIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 88888888888888876553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-11 Score=81.21 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 438 (608)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-09 Score=105.31 Aligned_cols=230 Identities=18% Similarity=0.163 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-----C-CCCc-hhHHHHHHHHhHhcCCHHHHHHHHhhcCC-------C--
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKN-----H-INTD-GFIGNALVDMYAKCGRIDQAFGVFRSMKC-------R-- 389 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 389 (608)
.+...+...|...|+++.|..++....+. | ..|. ....+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566777778888888888777766543 2 1122 22234466788888999888888887652 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcC--C
Q 047146 390 --DVYSYTAMIVGLAIHGKAWKALDIFSEMSQ-----VGIEP-DEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYN--L 458 (608)
Q Consensus 390 --~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 458 (608)
-..+++.|..+|.+.|++++|...+++..+ .|..+ ... .++.+...|...+.+++|..++....+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 235677788889999999988888777643 12222 222 566677789999999999999988776433 2
Q ss_pred CCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 047146 459 QPQ----TEHYGCMVDLFGRAGLIREALDLIKSM---------PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF- 523 (608)
Q Consensus 459 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 523 (608)
.++ ..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+++++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 367899999999999999999999887 1122 2457788889999999999999998877643
Q ss_pred ---CCCCC---chHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 524 ---EPEGD---GAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 524 ---~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+|+.+ .+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55554 578999999999999999999999886
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-08 Score=97.27 Aligned_cols=341 Identities=15% Similarity=0.093 Sum_probs=214.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 270 (608)
...+-|.++|++++|++.|.+..+ ..|| +.-|.....+|...|+++++.+--...++.++. -+..+..-..++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~---Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD---YVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH---HHHHHHHHHHHHH
Confidence 344567788899999999998877 4677 556777777788889998888887777776433 3455666667777
Q ss_pred hcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHH--------HHh-CC--CCCChHHHHHHHHHHhccC
Q 047146 271 KCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR--------MQG-LG--LKPDDFTLVCVLNSCANIG 339 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~-~g--~~p~~~t~~~ll~~~~~~~ 339 (608)
..|++++|+.= +|-..+..++....-.--+.+++++ -.. .+ +.|+.....+....+...-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 78888877631 2223333333332222222222222 111 11 3344433333333221100
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc-CCHHHHHHHHhhcC-------CC---Ch------hHHHHHHHHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC-GRIDQAFGVFRSMK-------CR---DV------YSYTAMIVGLA 402 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-------~~---~~------~~~~~li~~~~ 402 (608)
. ..+...+-..|...-..+=..+... ..+..|...+.+-. .. |. .+......-+.
T Consensus 266 ~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 K--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred c--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0 0000000011111111111111110 12333333332211 11 11 11111122244
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 481 (608)
-.|+.-.|..-|+..+.....++. .|.-+...|....+.++.++.|.++.+ +.| +..+|..-..++.-.+++++|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHH
Confidence 568888999999999885433333 276777789999999999999999876 445 577888888888888999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 482 LDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 482 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..-|++. .+.| +...|-.+.-+..+.++++++...|+...+..|..+.+|+..+.++...+++++|.+.++...+-.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999988 6777 556777777777788899999999999999999999999999999999999999999999987643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-07 Score=84.58 Aligned_cols=192 Identities=15% Similarity=0.122 Sum_probs=112.3
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGK-------AWKALDIFSEMSQVGIEPDEV-TFVGVLSAC 436 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~ 436 (608)
.|+-.|.+.+++++|..+.+.+...++.-|-.-.-.++..|+ ..-|.+.|+-.-+.+...|.. .-.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 455668889999999999888875444433332223333332 233555555444444443332 233444455
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHH-HHHHHcCCHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMP-LV-PDAFVWGALL-GACKIHAKVELA 513 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~-~~~~~~~~~~~a 513 (608)
.-..++++..-.+..+.. +-...|...+ .+..+++..|.+.+|+++|-.+. -. .|..+|.+++ +.|.+.++.+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 555677777777777766 3333344333 46777888888888888887772 11 3556666555 556677777666
Q ss_pred HHHHHHHHhcC-CCCC-chHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 514 EIVMENLVRFE-PEGD-GAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 514 ~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
..+ +++.+ |.+. ......++.|.+++.+=-|-+.|+.+...++.|
T Consensus 448 W~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 444 34433 3222 233455667777787777777777776555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-09 Score=109.45 Aligned_cols=260 Identities=11% Similarity=0.010 Sum_probs=182.0
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 047146 289 NVVSWNSMIAGLTH-----RGQFKEALDIFRRMQGLGLKPDD-FTLVCVLNSCA---------NIGWLELGKWVHTYLDK 353 (608)
Q Consensus 289 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 353 (608)
+...|...+.+-.. .+.+++|+.+|++..+. .|+. ..+..+..++. ..++++.|...++.+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44445555554321 13457888888888875 4554 34444433332 23457888888888887
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HH
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TF 429 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~ 429 (608)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 44667777888889999999999999998763 4 4567888889999999999999999999984 56543 33
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHH
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAF-VWGALLGACKI 506 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 506 (608)
..++..+...|++++|...++++.+. ..| +...+..+..+|...|+.++|...++++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34455566789999999999998762 234 4556777888999999999999999988 5555544 44455556666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.| +.|...++++.+.....+.....+..+|.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4788878877765333222233377778888887777766 8887654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-09 Score=110.71 Aligned_cols=226 Identities=15% Similarity=-0.002 Sum_probs=169.8
Q ss_pred ChHHHHHHHHHHh-----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH---------hcCCHHHHHHHHhhcCC-
Q 047146 324 DDFTLVCVLNSCA-----NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA---------KCGRIDQAFGVFRSMKC- 388 (608)
Q Consensus 324 ~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~- 388 (608)
+...|...+.+-. ..++.+.|...++...+... .+...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3344545555432 22456788889998887652 23445555555544 23458899999988764
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh-hH
Q 047146 389 --RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT-EH 464 (608)
Q Consensus 389 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~ 464 (608)
.+...|..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++++.+ +.|+. ..
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~ 408 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAA 408 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhh
Confidence 36678888888899999999999999999984 665 45788888899999999999999999977 45542 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PL-VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 541 (608)
+..++..+...|++++|++.+++. .. .| ++..+..+..++...|+.++|...++++....|.+......+...|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 334455677789999999999887 22 35 4455667778888999999999999998888888887888888888888
Q ss_pred CChHHHHHHHHHHHhC
Q 047146 542 NRWKEALKLRKKMKER 557 (608)
Q Consensus 542 g~~~~A~~~~~~m~~~ 557 (608)
| ++|...++++.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 8 4888888887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=94.81 Aligned_cols=200 Identities=12% Similarity=0.036 Sum_probs=113.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...+....+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 3456666777777777777777777776542 2223344444444444444444444444443332
Q ss_pred hHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHH
Q 047146 370 YAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
..+...+..+...+...|++++|...+++.......| ....+..+...+...|++++|...
T Consensus 96 ------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 96 ------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 1233445555555566666666666666665532222 223455555666667777777777
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+.+..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+..
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7766552 2223455666667777777777777776665 2222 44555556666667777777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-07 Score=89.27 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCChhHH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 459 QPQTEHY--GCMVDLFGRAGLIREALDLIKSM-PLVPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 459 ~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
+|....| -.++..|-+.|+++.|..+++.. +-.|+.+ .|..-.+.+...|++++|...++++.+++-.|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4555444 45778888999999999999988 6567554 555556778889999999999999999988876555577
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 535 TNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
+.-..++++.++|.++....-+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7777899999999999988876664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-08 Score=98.29 Aligned_cols=211 Identities=16% Similarity=0.093 Sum_probs=141.4
Q ss_pred ChHHHHHHHHHHHHcC-CCC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 047146 340 WLELGKWVHTYLDKNH-INT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDI 413 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~ 413 (608)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 222 234566777788888999999888887653 3567888888889999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 047146 414 FSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PL 490 (608)
Q Consensus 414 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 490 (608)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999887 5665 45777778888888999999999888876 3454322222223344567889998888664 22
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 491 VPDAFVWGALLGACKIHAKVELAEIVMENLV-------RFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 491 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.|+...| . ......|+...+ +.++.+. ++.|..+.+|..++.+|.+.|++++|+..|++..+.++
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332222 1 222334554433 2334333 44556667899999999999999999999998876553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-06 Score=84.41 Aligned_cols=463 Identities=14% Similarity=0.095 Sum_probs=284.1
Q ss_pred CCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHH
Q 047146 80 NPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL 158 (608)
Q Consensus 80 ~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 158 (608)
+.....|..++.+|- .+++.. +++.+...+. ..-...|....--.+...|+.++|.......++..+ .+.+.|..+
T Consensus 5 ~KE~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~ 81 (700)
T KOG1156|consen 5 PKENALFRRALKCYE-TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVL 81 (700)
T ss_pred hHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHH
Confidence 334455666777664 456666 8888877763 222223333332235567888999888777666443 345567777
Q ss_pred HHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCC
Q 047146 159 MRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP-DGMILVIVLSACSKLGD 237 (608)
Q Consensus 159 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~ 237 (608)
--.+-...++++|...|....... +.|...|.-+.-.-++.|+++...+.-.+..+. .| ....|..+..+..-.|+
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHH
Confidence 666667788999999998855422 345566766666667778888888877777664 33 34567778888888999
Q ss_pred chHHHHHHHHHHHccCCCCCchHHHHHHH------HHHHhcCChHHHHHHHccCCCC--Chh-hHHHHHHHHHhcCChhH
Q 047146 238 LSLGIKIHRYITDNHFNLSPDVFIHNALI------DMYLKCGNIPSARKVFDEMPVK--NVV-SWNSMIAGLTHRGQFKE 308 (608)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~ 308 (608)
...|..+.++..+... ..|+...+.-.. ....+.|..+.|.+.+...... |-. .-.+....+.+.++.++
T Consensus 159 y~~A~~il~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 9999999999988753 234555544332 3445678888888887766532 222 22345566788999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHh-ccCChHHHH-HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 309 ALDIFRRMQGLGLKPDDFTLVCVLNSCA-NIGWLELGK-WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 309 A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
|..++..++.. .||...|.-.+..+. ...+..++. .++....+.-....... ..=+.......-.+..-+++..+
T Consensus 238 A~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 238 AVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHHHHHHHH
Confidence 99999999986 588777766665554 233333333 45554433211111000 00001111111122233333333
Q ss_pred CCC-ChhHHHHHHHHHHHcCChHHHHHHHHHH----HHCC----------CCCCHH--HHHHHHHHHhccccHHHHHHHH
Q 047146 387 KCR-DVYSYTAMIVGLAIHGKAWKALDIFSEM----SQVG----------IEPDEV--TFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 387 ~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
.+. -+.++..+.+.|-.....+-..++.-.+ ...| -+|... |+..+...+-+.|+++.|..++
T Consensus 315 l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 315 LSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred hhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 322 2334444444443322222111111111 1111 144543 5555677788999999999999
Q ss_pred HHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 450 LDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-PL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 450 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
+.+.. ..|+ ++.|..-.+.+...|.+++|..++++. .. .||...-.--..-..+.+..++|..++.+..+.+-+
T Consensus 395 d~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 395 DLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 99876 3565 567777789999999999999999988 32 345554445556667889999999999988876542
Q ss_pred CC-------chHHHH--HHHHHhCCChHHHHHHHHHHH
Q 047146 527 GD-------GAYILM--TNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 527 ~~-------~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 555 (608)
-. -.|..+ +.+|.++|++.+|++=|..+.
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 11 123333 677889988888887666654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.7e-07 Score=89.52 Aligned_cols=413 Identities=14% Similarity=0.052 Sum_probs=265.4
Q ss_pred HHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCC
Q 047146 105 YREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQ 184 (608)
Q Consensus 105 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 184 (608)
+.++....+.-|...|..+.-++...|+++.+-+.|++.....+ -....|+.+-..|.-+|.-..|..+++........
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 33444445666788888888899999999999999998876443 45668888888999999999999999875443333
Q ss_pred CCcchHHHHH-HHHH-hCCCchHHHHHHHHHHHC--CC--CCCHhHHHHHHHHhhcc----C-------CchHHHHHHHH
Q 047146 185 RDLVSWTTLI-QAYV-KMDYPTEAILSFFDMCQA--NL--RPDGMILVIVLSACSKL----G-------DLSLGIKIHRY 247 (608)
Q Consensus 185 ~~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~--~~--~p~~~t~~~ll~~~~~~----~-------~~~~a~~~~~~ 247 (608)
|+..+--.++ ..|. +.+..++++++-.+.... +. ......|..+.-+|... . ...++.+.++.
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4434333333 3333 346677777776665541 11 11223333333333221 1 23567778888
Q ss_pred HHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047146 248 ITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKP 323 (608)
Q Consensus 248 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 323 (608)
.++.+.. |+.+.-.+.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+...+. .|
T Consensus 470 av~~d~~---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~ 544 (799)
T KOG4162|consen 470 AVQFDPT---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FG 544 (799)
T ss_pred HHhcCCC---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hh
Confidence 8887644 33333344445777889999988877654 457789999999999999999999999877654 11
Q ss_pred C-hHHHHHHHHHHhccCChHHHHHHHHHHH---------------------HcC-------CCCchhHHHHHHHHhH---
Q 047146 324 D-DFTLVCVLNSCANIGWLELGKWVHTYLD---------------------KNH-------INTDGFIGNALVDMYA--- 371 (608)
Q Consensus 324 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~---------------------~~~-------~~~~~~~~~~li~~~~--- 371 (608)
+ ..-...-+..-...++.+.+......+. +.| ....+.++..+.....
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 1 0000000111111222222221111110 111 0111222222222111
Q ss_pred hcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHH
Q 047146 372 KCGRIDQAFGVFRSMKCRD------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEE 444 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 444 (608)
+.-..+.....+...+.|+ ...|......+...++.++|...+.+... +.| ....|......+...|..++
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 1111111112222222233 23566677788899999999988888877 445 44577777778888999999
Q ss_pred HHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047146 445 GCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALD--LIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMEN 519 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 519 (608)
|.+.|..... +.|+ +...+++..++.+.|+..-|.. ++..+ .+.| +...|-.+...+.+.|+.+.|.+.|+.
T Consensus 703 A~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 703 AKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 9999998865 6774 6788999999999998887777 77777 6667 788999999999999999999999999
Q ss_pred HHhcCCCCC
Q 047146 520 LVRFEPEGD 528 (608)
Q Consensus 520 ~~~~~p~~~ 528 (608)
+.++.+.+|
T Consensus 780 a~qLe~S~P 788 (799)
T KOG4162|consen 780 ALQLEESNP 788 (799)
T ss_pred HHhhccCCC
Confidence 999988776
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-09 Score=94.13 Aligned_cols=231 Identities=14% Similarity=0.049 Sum_probs=132.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 294 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
+.|.++|.+.|.+.+|...|+.-.+. .|-..||..+-++|.+..+...|..++..-.+. ++.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888777665 444555655555555555555555555444332 122333333344444455
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 047146 374 GRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450 (608)
Q Consensus 374 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 450 (608)
++.++|.++++...+ .++.....+..+|.-.++++-|+.+++++.+.|+. +...|+.+.-+|...++++-+...|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555554432 23333333444455555555555555555555432 34445555555555555555554444
Q ss_pred HhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 451 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
+.... --.|+ .-..+|-.+.......||+..|.+.|+-++..+|++...
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 44331 11111 123355555555666778888888888888888888888
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
++.|+-+-.+.|++++|..+++......+
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 88888888888888888888887765543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-06 Score=82.22 Aligned_cols=294 Identities=12% Similarity=0.017 Sum_probs=206.7
Q ss_pred chHHHHHHHHHHHh--cCChHHHHHHHccCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH-
Q 047146 258 DVFIHNALIDMYLK--CGNIPSARKVFDEMP-----VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV- 329 (608)
Q Consensus 258 ~~~~~~~li~~~~~--~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~- 329 (608)
+......-+.+++. .++...|...+-.+. ..|+.....+...+...|+.++|+..|++.+.. .|+..+-.
T Consensus 193 ~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD 270 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMD 270 (564)
T ss_pred CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHH
Confidence 33444444444444 444444444443222 447778889999999999999999999998764 45543321
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCC
Q 047146 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAIHGK 406 (608)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 406 (608)
...-.+...|+.+....+...+....-. +...|-.-.......++++.|..+-++..+- ++..+-.-...+.+.|+
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc
Confidence 1122345678888887777766543211 1111111222334557889999888877643 44555444567889999
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHH-HHHH-hcCCHHHHHH
Q 047146 407 AWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV-DLFG-RAGLIREALD 483 (608)
Q Consensus 407 ~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~ 483 (608)
+++|.-.|+..+. +.| +...|..++.+|...|.+.+|.-+-+...+ -++.+..+.+.+. ..+. ....-++|.+
T Consensus 350 ~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 350 HTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred hHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 9999999999887 565 567999999999999999999887777766 3444555555442 3332 2234578999
Q ss_pred HHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 484 LIKSM-PLVPDA-FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 484 ~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
+++.. .+.|+- ...+.+...|...|..+.+..++++.+...|+.. ....|++++...+.+.+|.+.|......++
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 99887 778864 4667777889999999999999999999999885 788999999999999999999998876554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-08 Score=97.28 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=83.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccccHHHHHHHHHHhHhhc----C-CCC-Chh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQV---GIEPDE----VTFVGVLSACSHAGLVEEGCKHFLDMSRVY----N-LQP-QTE 463 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~ 463 (608)
++..+...+++++|..++++..+. -+.++. .+++.+...+.+.|++++|.++|+++++.. + ..+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 344445555555555555443321 122222 477778888888888888888888776632 1 122 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM--------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
.++.|...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5677888888888888888877765 23444 35889999999999999999999988873
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-06 Score=80.93 Aligned_cols=396 Identities=10% Similarity=0.029 Sum_probs=222.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA-QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
+..|-..+....+.|++...+..|+......+ ......|...+...-..+-++-++.+|++.++- ++..-..-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 45777778888889999999999887544332 335567888888888899999999999998663 3344566677
Q ss_pred HhhccCCchHHHHHHHHHHHccC----CCCCchHHHHHHHHHHHhcCCh---HHHHHHHccCCCC--C--hhhHHHHHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHF----NLSPDVFIHNALIDMYLKCGNI---PSARKVFDEMPVK--N--VVSWNSMIAG 299 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~ 299 (608)
.++..+++++|.+.+..++.... ..+.+...|..+.+..++.-+. -....+++.+..+ | ...|+.|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 78888999999998887765321 1122667777777777765432 2344556555532 2 3579999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChH----------------------HHHHHHHHHHHcC--
Q 047146 300 LTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE----------------------LGKWVHTYLDKNH-- 355 (608)
Q Consensus 300 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~----------------------~a~~~~~~~~~~~-- 355 (608)
|.+.|++++|.++|++..+. ..+..-|..+..+|+.-.... ....-++.+....
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999988775 334444555555554322111 1111122221111
Q ss_pred ---------CCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---C------ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047146 356 ---------INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---R------DVYSYTAMIVGLAIHGKAWKALDIFSEM 417 (608)
Q Consensus 356 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~A~~~~~~m 417 (608)
-+.++..|..-+.. ..|+..+-..++.+..+ | -...|..+...|-.+|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 01111111111111 12334444444433321 1 1234666666666666666666666666
Q ss_pred HHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCC----------C-------ChhHHHHHHHHHHhcCC
Q 047146 418 SQVGIEPD---EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ----------P-------QTEHYGCMVDLFGRAGL 477 (608)
Q Consensus 418 ~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~g~ 477 (608)
.+-..+-- ..+|..-...-.+..+++.|.++.+.+... .-. | +...|..+++.--..|-
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 55332211 123444444444555666666665555431 000 0 12345555555556666
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHh---CCChHHHHHH
Q 047146 478 IREALDLIKSM-PLV-PDAFVWGALLGACKIHAKVELAEIVMENLVRFEP--EGDGAYILMTNIYSS---KNRWKEALKL 550 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~---~g~~~~A~~~ 550 (608)
++.-..+++++ .++ ..+.........+-.+.-++++.+++++-+.+.+ .-...|+.....+.+ .-+.+.|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 66666666665 111 1222222222233445556667777776666642 223345544433332 2356778888
Q ss_pred HHHHHh
Q 047146 551 RKKMKE 556 (608)
Q Consensus 551 ~~~m~~ 556 (608)
|++..+
T Consensus 573 FEqaL~ 578 (835)
T KOG2047|consen 573 FEQALD 578 (835)
T ss_pred HHHHHh
Confidence 887776
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=86.66 Aligned_cols=161 Identities=11% Similarity=0.090 Sum_probs=122.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHH
Q 047146 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDL 471 (608)
Q Consensus 394 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 471 (608)
...+..+|.+.|++..|..-+++..+ ..|+.. ++..+...|.+.|..+.|.+.|+...+ +.| +..+.|...-.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34456677888888888888888877 466554 777777778888888888888887765 445 46677777778
Q ss_pred HHhcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHH
Q 047146 472 FGRAGLIREALDLIKSM---PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 547 (608)
+|..|++++|...|++. +..| -..+|..+..+..+.|+.+.|+..+++.++.+|+.+.....+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888877 2222 2457777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCC
Q 047146 548 LKLRKKMKERKV 559 (608)
Q Consensus 548 ~~~~~~m~~~~~ 559 (608)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888888776654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=92.44 Aligned_cols=193 Identities=10% Similarity=0.072 Sum_probs=163.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMK--CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFV-GVLSACSHAG 440 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g 440 (608)
+.+.++|.+.|.+.+|++.|+.-. .|-+.+|-.+-.+|.+..++..|+.++.+-.+ ..|-.+||. .....+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 678899999999999999998765 47788999999999999999999999999888 477666654 4556788889
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
+.++|.++++.+.+. -+.+++...++...|.-.++++-|+.+++++ ++ -++..|..+.-.|.-.+++|.+...|
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999872 3446778888889999999999999999987 54 37888889989999999999999999
Q ss_pred HHHHhcC--CC-CCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 518 ENLVRFE--PE-GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 518 ~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
++++..- |+ -..+|..++.+....|++.-|.+.|+-....+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 9998763 33 34689999999999999999999999887666544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-06 Score=88.43 Aligned_cols=411 Identities=14% Similarity=0.094 Sum_probs=240.3
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcch-HHHHHHHHHhC-
Q 047146 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVS-WTTLIQAYVKM- 200 (608)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~- 200 (608)
-...+...|++++|.+.+..-.+. +.............+.+.|+.++|..++..+...++ +... |..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP--dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP--DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHhhhc
Confidence 344567788899998888765443 333455667778888899999999998888766543 4444 44444444222
Q ss_pred ----CCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCc-hHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCCh
Q 047146 201 ----DYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL-SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNI 275 (608)
Q Consensus 201 ----g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 275 (608)
...+...++|+++...- |.......+.-.+..-..+ ..+...+...++.|+ +.+++.|-..|......
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-----PslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-----PSLFSNLKPLYKDPEKA 159 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-----chHHHHHHHHHcChhHH
Confidence 24566677888776542 4444333332222221122 234455555666643 34677777777755554
Q ss_pred HHHHHHHccCC------------------CCChhhH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHHH
Q 047146 276 PSARKVFDEMP------------------VKNVVSW--NSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-DFTLVCVLNS 334 (608)
Q Consensus 276 ~~A~~~~~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 334 (608)
+-..+++.... .|....| .-+...|-..|++++|++.+++.++. .|+ ...|..-...
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 44444444321 1222234 45566777888889999988888876 455 4566677777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCCh----------hHH--HHHHHHHH
Q 047146 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV----------YSY--TAMIVGLA 402 (608)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~ 402 (608)
+-+.|++.+|...++...... ..|..+-+-.+..+.++|++++|.+++.....++. ..| .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887765 34566666777788888888888888887765441 123 23456788
Q ss_pred HcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH--
Q 047146 403 IHGKAWKALDIFSEMSQV--GIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI-- 478 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-- 478 (608)
+.|++..|++.|....+. .+.-|..-|.+. |.+.+-+..=.++++.--.-+..+.=.......++.|.+.-+-
T Consensus 317 r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y---c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~ 393 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY---CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPE 393 (517)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcccccHHHH---HHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcc
Confidence 888888888888776642 233344433322 5555555444444333222111111223334444544332110
Q ss_pred ----------------HHHHHHHHhC----------------------------------C--CCCCHHHHHHHHHHHHH
Q 047146 479 ----------------REALDLIKSM----------------------------------P--LVPDAFVWGALLGACKI 506 (608)
Q Consensus 479 ----------------~~A~~~~~~~----------------------------------~--~~p~~~~~~~l~~~~~~ 506 (608)
.+..++-+.. + ..||+.- ..|+ ..
T Consensus 394 ~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t 469 (517)
T PF12569_consen 394 AKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KT 469 (517)
T ss_pred cccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cC
Confidence 0000000000 0 0011100 0011 11
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
..=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 470 ~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 470 EDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 22356788888888888888888888888888898888888776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.9e-06 Score=84.52 Aligned_cols=345 Identities=12% Similarity=0.084 Sum_probs=194.3
Q ss_pred HHHccCCchHHHhhCC-CCCcchHHHHHHHHHcCCCccH-HHHHHHHHH-CC--------CCCCceeHHHHHHHHhccCC
Q 047146 64 IISLSRGNEIENLSLQ-NPQVYLYNFIIQCLSNANPLEA-IALYREMLI-KG--------LLPNTYTLPYVLKACWQSQS 132 (608)
Q Consensus 64 ~~~~~g~~~~A~~~~~-~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~-~g--------~~p~~~t~~~ll~~~~~~~~ 132 (608)
.|..-|+.+.|.+.+. -.+-..|..|.+.+.+..+.+- .-.+..|.. +| -.|+ .+=.-+.-.....|.
T Consensus 737 fyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGM 815 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhh
Confidence 4566788888887222 2445669999888888777765 545555432 11 1122 333333334567899
Q ss_pred cHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 047146 133 LRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFD 212 (608)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 212 (608)
+++|+.++.+..+ |..|-+.|...|.+++|.++-+.--. .. =..||..-..-+-..++.+.|++.|++
T Consensus 816 lEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR-iH--Lr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 816 LEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR-IH--LRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc-ee--hhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 9999999988877 34556778889999999999876111 11 123454455555667888888888875
Q ss_pred H----------HHCCC---------CCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcC
Q 047146 213 M----------CQANL---------RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273 (608)
Q Consensus 213 m----------~~~~~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 273 (608)
- +.... +-|...|..-..-.-..|+.+.|..+|..... |-++++..|-.|
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQG 952 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeecc
Confidence 3 22110 12233333334444455555655555544332 334555555667
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC--------------
Q 047146 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG-------------- 339 (608)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-------------- 339 (608)
+.++|-++-++- .|......+.+.|-..|++.+|+..|.+.+. |...|+.|-..+
T Consensus 953 k~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 953 KTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred CchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 777776665543 3556667778888888888888888877643 333333332222
Q ss_pred -ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--------------CChhHHHHHHHHHHHc
Q 047146 340 -WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--------------RDVYSYTAMIVGLAIH 404 (608)
Q Consensus 340 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~ 404 (608)
+.-.|..+|++. |.. +...+..|-+.|.+.+|+++--+-.+ .|+...+.-..-++.+
T Consensus 1022 ~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred hhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 222222333321 111 12334567777777777665432221 2445555555555666
Q ss_pred CChHHHHHHHHHHHH----------CC----------------CCCCH----HHHHHHHHHHhccccHHHHHHHHHH
Q 047146 405 GKAWKALDIFSEMSQ----------VG----------------IEPDE----VTFVGVLSACSHAGLVEEGCKHFLD 451 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~----------~g----------------~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~ 451 (608)
.++++|..++-..++ +| -.|+. ..+..+...|.++|.+..|-+-|..
T Consensus 1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 666666555422211 11 12333 2456666778888887777654443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-07 Score=88.44 Aligned_cols=229 Identities=13% Similarity=-0.016 Sum_probs=147.2
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047146 304 GQFKEALDIFRRMQGLG-LKPD--DFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380 (608)
Q Consensus 304 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 380 (608)
+..+.++..+.+++... ..|+ ...|......+...|+.+.|...+....+.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666665431 1222 2335555555666777777777777666654 345677788888889999999999
Q ss_pred HHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcC
Q 047146 381 GVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457 (608)
Q Consensus 381 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 457 (608)
..|++..+ | +...|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 98887753 3 4577888888888999999999999998874 56543222222234556789999999977654 2
Q ss_pred CCCChhHHHHHHHHHHhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC
Q 047146 458 LQPQTEHYGCMVDLFGRAGLIRE--ALDLIKSM-PL----VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE-GD 528 (608)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~ 528 (608)
..|+...+ .+... ..|+..+ +.+.+.+. .. .| ....|..+...+.+.|++++|...|+++.+.+|. ..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 23333 3444433 33333222 11 12 3357888899999999999999999999999974 44
Q ss_pred chHHHHHHHHHh
Q 047146 529 GAYILMTNIYSS 540 (608)
Q Consensus 529 ~~~~~l~~~~~~ 540 (608)
.+...++.....
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 444555544433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-08 Score=92.00 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=113.8
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----ccc
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH----AGL 441 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~ 441 (608)
...+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+ +..| .+...+..++.. ...
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchh
Confidence 344566788899888888765 5667777788889999999999999999987 3444 344445444332 236
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 047146 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKV-ELAEIVME 518 (608)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~ 518 (608)
+.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++.+. ...| |+.++..++......|+. +.+.+.++
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 8899999999876 45677888888888999999999999988876 4444 566777777777778877 67788888
Q ss_pred HHHhcCCCCC
Q 047146 519 NLVRFEPEGD 528 (608)
Q Consensus 519 ~~~~~~p~~~ 528 (608)
++....|+.+
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 8888888865
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-06 Score=89.32 Aligned_cols=124 Identities=18% Similarity=0.133 Sum_probs=80.0
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMKC--RD-VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 439 (608)
+.-+...|-..|++++|.+++++..+ |+ +..|..-...+-+.|++.+|.+.++..+... .-|...-+-....+.+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 34556667777888888888776653 33 4566666777778888888888877777742 22444555556667777
Q ss_pred ccHHHHHHHHHHhHhhcCCCCChh------HH--HHHHHHHHhcCCHHHHHHHHHhC
Q 047146 440 GLVEEGCKHFLDMSRVYNLQPQTE------HY--GCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
|++++|.+++....+. +..|... .| .....+|.+.|++..|++.|..+
T Consensus 276 ~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 276 GRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888777777662 3333221 12 34466777778777777665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-07 Score=82.60 Aligned_cols=170 Identities=11% Similarity=0.190 Sum_probs=71.3
Q ss_pred HHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHH-----HhccCChHHHHHHHHH
Q 047146 276 PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNS-----CANIGWLELGKWVHTY 350 (608)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-----~~~~~~~~~a~~~~~~ 350 (608)
+.|++++-.+...=+..--.++--|.++++.++|..+.+++.- ..|-......+..+ ........-|.+.++.
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 4455554433322223333455557778888888887766532 12322222222211 1112233444555555
Q ss_pred HHHcCCCCchhHH-HHHHHHhHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047146 351 LDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKC----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425 (608)
Q Consensus 351 ~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 425 (608)
.-.++...|+..- .++...+.-..++++++-.++.+.. .|...+ .+.++++..|++.+|.++|-++....++ |
T Consensus 349 VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n 426 (557)
T KOG3785|consen 349 VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-N 426 (557)
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-h
Confidence 4444433332221 1223333333444555444444431 122222 2344455555555555555444332221 2
Q ss_pred HHHHHHH-HHHHhccccHHHHHHHH
Q 047146 426 EVTFVGV-LSACSHAGLVEEGCKHF 449 (608)
Q Consensus 426 ~~~~~~l-l~~~~~~g~~~~a~~~~ 449 (608)
..+|.++ ..+|.+.+.++.|+.++
T Consensus 427 ~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 427 KILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3333332 23344445555554443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-05 Score=81.46 Aligned_cols=507 Identities=14% Similarity=0.119 Sum_probs=284.2
Q ss_pred CCchhhhHHHHHHhhcccchhhccCChhHHHHH---------HHHHH----HhCCCCchhHHHHHHHHHccCCchHHHh-
Q 047146 11 SRYNDINTFQQLSLLHQSPRLESSKSVGQLKQF---------HAFII----KTGSPQHQTQILYDKIISLSRGNEIENL- 76 (608)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----~~g~~~~~~~~~l~~~~~~~g~~~~A~~- 76 (608)
+++.+-++...-++..+-|+..-|..++....+ ...+. +-.+...+.+ +.++..-...++..+
T Consensus 754 dpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~V---vG~LLD~dC~E~~ik~ 830 (1666)
T KOG0985|consen 754 DPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQV---VGALLDVDCSEDFIKN 830 (1666)
T ss_pred CHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchh---hhhhhcCCCcHHHHHH
Confidence 778888888888899999999999865543221 11111 1122222222 222222233344444
Q ss_pred -hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHH----------HHHHHHHHH
Q 047146 77 -SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRV----------GQQVHAYSM 144 (608)
Q Consensus 77 -~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----------a~~~~~~~~ 144 (608)
-+..+..+.-+-+..-.-+.++..- +-.++.....|.. |..+++.+.+.|...++-.+ ...+=....
T Consensus 831 Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 831 LILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCE 909 (1666)
T ss_pred HHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhc
Confidence 2222333444555555556666666 6777777777765 77888888887766543221 111212222
Q ss_pred HhCc-------------------CCcHhHHHHHHHHHHhcCCHHHHHHHhcc-----------cCCCC--CCCCcchHHH
Q 047146 145 KTAL-------------------LSNVYVFNTLMRLYAVCGLIKAVHKLFHF-----------RQHPQ--AQRDLVSWTT 192 (608)
Q Consensus 145 ~~g~-------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------m~~~~--~~~~~~~~~~ 192 (608)
++.. ....+.|....+.+.+..+.+--.+++.+ ..+.. ...|+..-..
T Consensus 910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 2210 01122333444444444444433333321 11101 1234455566
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCC-CCHhHHHHHHHHhhccCCchHHHHHHHHHHHcc-------------------
Q 047146 193 LIQAYVKMDYPTEAILSFFDMCQANLR-PDGMILVIVLSACSKLGDLSLGIKIHRYITDNH------------------- 252 (608)
Q Consensus 193 li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------- 252 (608)
.+.++...+-+.+-++++++..-.+-. ........++-.-+-.-+.....+..+.+..-+
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHH
Confidence 678888888888888888887532211 111111111111111222222233322222210
Q ss_pred ----CCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHH
Q 047146 253 ----FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTL 328 (608)
Q Consensus 253 ----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 328 (608)
++. +....+.|+. ..+.++.|.++-++..+ +..|+.+..+-.+.|...+|++-|-+. -|+..|
T Consensus 1070 ifkkf~~--n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1070 IFKKFDM--NVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHhcc--cHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 011 2222222221 12344444444444433 457999999999999999999887543 466789
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--------------------
Q 047146 329 VCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-------------------- 388 (608)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------- 388 (608)
.-++..+.+.|.++.-..++..+.+..-+|.+. +.|+-+|++.+++.+-++++..-..
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAk 1214 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAK 1214 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHH
Confidence 999999999999999999999988887777665 5799999999999888876542110
Q ss_pred ---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHH
Q 047146 389 ---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465 (608)
Q Consensus 389 ---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 465 (608)
.++..|..+...+...|++..|...-++. .+..||..+-.+|...+.+..|. +.. .++-....-.
T Consensus 1215 l~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeL 1282 (1666)
T KOG0985|consen 1215 LLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADEL 1282 (1666)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhH
Confidence 13445556666666666666665544332 23457777777777776665552 211 1223345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-------CCCCchHHHHH
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRF-E-------PEGDGAYILMT 535 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------p~~~~~~~~l~ 535 (608)
.-++..|...|.+++-+.+++.. |...- -..|.-|.-.|.+ =++++-.+.++-.+.. + .+....|..+.
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 77889999999999999998876 55432 2244444444433 2445555555544432 1 12234677788
Q ss_pred HHHHhCCChHHHHH
Q 047146 536 NIYSSKNRWKEALK 549 (608)
Q Consensus 536 ~~~~~~g~~~~A~~ 549 (608)
-+|.+-..||.|.-
T Consensus 1362 fLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1362 FLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHhhhhhhHHHH
Confidence 88877777777643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-06 Score=77.53 Aligned_cols=420 Identities=11% Similarity=0.030 Sum_probs=234.0
Q ss_pred CCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchH
Q 047146 111 KGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190 (608)
Q Consensus 111 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 190 (608)
.|+..-..-+.+++..+.+..+++.+.+++....+.. +.+....+.|-.+|-...++..|...++++....+ ...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHH
Confidence 4444455567777777778888888888877766643 12556677777888888888888888887654332 22223
Q ss_pred HH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHH--hhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 047146 191 TT-LIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA--CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267 (608)
Q Consensus 191 ~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~ 267 (608)
.. -...+.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+++..+..+.++....+ +..+.+...-
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-----~Ad~~in~gC 152 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-----EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-----ccchhccchh
Confidence 21 234556778888888888877542 222222222222 234567777777766655322 4445555555
Q ss_pred HHHhcCChHHHHHHHccCCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHH-HHHHHHhccCChH
Q 047146 268 MYLKCGNIPSARKVFDEMPV----KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLV-CVLNSCANIGWLE 342 (608)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~ 342 (608)
...+.|+++.|.+-|....+ .....||.-+ +..+.|+++.|++...++.+.|++..+..=. ....+ .....+.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvg 230 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVG 230 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-Cchhccc
Confidence 56677888888877776653 2334555444 4446677788888888887777653221000 00000 0000000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047146 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEM 417 (608)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m 417 (608)
....++... -+..+|.-...+.+.|+.+.|.+.+-.|+. -|++|...+.-.- ..+++.+..+-+.-+
T Consensus 231 Nt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 231 NTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFL 302 (459)
T ss_pred chHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHH
Confidence 000001000 012234444456788999999999999984 3667765553222 235565666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCC-CChhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHH
Q 047146 418 SQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ-PQTEHYGCMVDLFGR-AGLIREALDLIKSMPLVPDAF 495 (608)
Q Consensus 418 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~ 495 (608)
...+. ....||..++-.|++..-++.|..++.+-.. ..+. .+...|+ |++++.- .-..++|.+-++.+...-...
T Consensus 303 L~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~k 379 (459)
T KOG4340|consen 303 LQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEK 379 (459)
T ss_pred HhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 66432 2456999999999999999999887765433 1111 1233333 3444443 345666666555441000000
Q ss_pred HHHHHHH--HHHHcCCH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 496 VWGALLG--ACKIHAKV---ELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 496 ~~~~l~~--~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.-...+. --...++- ..+..-+++.+++.- .+....++.|++..++.-+.++|+.-.+-
T Consensus 380 LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 380 LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1111111 11112221 122233333333322 24566778899999999999999987653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-06 Score=84.10 Aligned_cols=215 Identities=13% Similarity=0.009 Sum_probs=138.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCCh---h-------HHHHHHH
Q 047146 330 CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV---Y-------SYTAMIV 399 (608)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~-------~~~~li~ 399 (608)
.+..+.-+..+++.+.+-+....... .+..-++....+|...|.+..+...-+...+..- . .+..+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34445555566667776666666554 4555556666677777776666555444332111 1 1222334
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChh-HHHHHHHHHHhcCCH
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE-HYGCMVDLFGRAGLI 478 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 478 (608)
+|.+.++++.++..|.+....-..|+. ..+....+++....... .-+.|... -...-...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccCH
Confidence 566667777777777776654333332 11222233333332222 12334321 112225667788999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 479 REALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 479 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..|++.+.++ ...| |...|..-.-+|.+.|.+..|..-.+..++++|+....|..-+.++....+|++|.+.|++-.+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888 4456 6778888888889999999999999999999999988999889999999999999999988876
Q ss_pred CC
Q 047146 557 RK 558 (608)
Q Consensus 557 ~~ 558 (608)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 55
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.8e-07 Score=77.39 Aligned_cols=165 Identities=15% Similarity=0.027 Sum_probs=106.6
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSAC 436 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 436 (608)
.++..+...|.+.|..+.|.+.|+... ..+..+.|....-+|..|++++|...|++....-.-|. ..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 344555556666666666666666543 23445566666666777777777777777766433332 24677777777
Q ss_pred hccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a 513 (608)
.+.|+.+.|...|++..+ ..| .......+.+...+.|++..|..+++.. ...++..+....|......|+.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 777777777777777765 233 2445566777777777777777777766 3346677777777777777777777
Q ss_pred HHHHHHHHhcCCCCC
Q 047146 514 EIVMENLVRFEPEGD 528 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~ 528 (608)
.+.=.++.+..|...
T Consensus 227 ~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 227 QRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHhCCCcH
Confidence 776666666677654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=0.00015 Score=75.81 Aligned_cols=467 Identities=13% Similarity=0.150 Sum_probs=261.8
Q ss_pred HH-HHHHHHccCCchHHHh-hCCCC---------CcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHH
Q 047146 59 IL-YDKIISLSRGNEIENL-SLQNP---------QVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKA 126 (608)
Q Consensus 59 ~~-l~~~~~~~g~~~~A~~-~~~~~---------~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~ 126 (608)
+. +.+.|.+.|-...|++ -.... +...=..+..-+... ..+. ++.+..|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~l-sve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSL-SVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44 8888999998888886 11111 111112233334433 4455 9999999998888887777777666
Q ss_pred HhccCCcHHHHHHHHHHHHh-----------CcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCC-------------
Q 047146 127 CWQSQSLRVGQQVHAYSMKT-----------ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ------------- 182 (608)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------- 182 (608)
|...--.+.-.++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-..
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 66554445555555554332 134567777788999999999999988876411100
Q ss_pred --CC------------CCcchH------HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhH-------------HHHHH
Q 047146 183 --AQ------------RDLVSW------TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMI-------------LVIVL 229 (608)
Q Consensus 183 --~~------------~~~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-------------~~~ll 229 (608)
.. +|.+.| -..|..|++.-++...-.+.-.+.+.. -+... ...+.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHH
Confidence 00 111111 012334444333222222211111110 01111 11233
Q ss_pred HHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC------------CCCh-------
Q 047146 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP------------VKNV------- 290 (608)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------~~~~------- 290 (608)
.-+-+.+++..-..+++..+..|.. |..++|+|...|...++-.+- ++++-+ ++|+
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~---d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ---DPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc---chHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEee
Confidence 3445556666667777777777654 788888888777665442221 111100 0000
Q ss_pred ----------------hhHHHHHHHHHhcCChh---HHH--------HHHHHHHhCCCC--CChHHHHHHHHHHhccCCh
Q 047146 291 ----------------VSWNSMIAGLTHRGQFK---EAL--------DIFRRMQGLGLK--PDDFTLVCVLNSCANIGWL 341 (608)
Q Consensus 291 ----------------~~~~~li~~~~~~g~~~---~A~--------~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~ 341 (608)
..|-...+-+....+.+ +++ .+.++..+.+++ .|+...+..+.++...+-.
T Consensus 921 erGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp 1000 (1666)
T KOG0985|consen 921 ERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLP 1000 (1666)
T ss_pred cccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCc
Confidence 01111111222222211 111 122222222211 1233333344444444444
Q ss_pred HHHHHHHHHHHHcC--CCCchhHHHHHH---------------------------HHhHhcCCHHHHHHHHhhcCC----
Q 047146 342 ELGKWVHTYLDKNH--INTDGFIGNALV---------------------------DMYAKCGRIDQAFGVFRSMKC---- 388 (608)
Q Consensus 342 ~~a~~~~~~~~~~~--~~~~~~~~~~li---------------------------~~~~~~g~~~~A~~~~~~~~~---- 388 (608)
.+-+++++.+.-.+ +.-+....|.|+ ......+-+++|..+|+....
T Consensus 1001 ~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 44444444432211 111111111111 112222334555555543220
Q ss_pred ---------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 047146 389 ---------------------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 389 ---------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 447 (608)
..+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 24567999999999999999888776542 356689999999999999999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
++..+++ ..-+|.++ +.|+-+|++.+++.+-++++. .||..-...+..-|...|.++.|+-++...
T Consensus 1155 yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v------- 1220 (1666)
T KOG0985|consen 1155 YLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV------- 1220 (1666)
T ss_pred HHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------
Confidence 8887776 35566554 578999999999998887763 578888888999999999999998888754
Q ss_pred CchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 528 DGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
+.|..|+..+...|.+.-|...-++.
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57888888888888887776554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.3e-06 Score=82.21 Aligned_cols=193 Identities=14% Similarity=0.203 Sum_probs=108.3
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 047146 333 NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
.+......+.+|..+++.+...... ..-|..+.+.|...|+++.|+++|-+.. .++-.|..|.+.|++++|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 3444556666777776666554322 2334556677777777777777776542 34556667777777777776
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047146 413 IFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492 (608)
Q Consensus 413 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 492 (608)
+-.+.. |.......|..-..-.-+.|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++.++-.-.-
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhh
Confidence 655432 122233344444444666677777766654432 2432 3566677777777777766651111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
-..|...+..-+-..|+.+.|+..|-++ .-|..-+++|...+.|++|.++-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 2234445555566666666666555443 234445555555555555555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-07 Score=90.78 Aligned_cols=219 Identities=14% Similarity=0.077 Sum_probs=168.4
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 047146 336 ANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
.+.|++..|.-.|+..++.. +.+...|..|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566666666666666554 44566667777777777777778777776653 355677777778888888889999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 413 IFSEMSQVGIE--------PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 413 ~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
.++.-.....+ ++...-.. ..+.....+....++|-++....+..+|..+...|.-.|.-.|++++|++.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887654211 00000000 223334455666777877777667668889999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 485 IKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 485 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
|+.+ .++| |...|+-|...+....+.++|+..+.+++++.|....++..|+-.|...|.++||.+.|-.....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9998 7778 77899999999999999999999999999999999999999999999999999999998887643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.1e-06 Score=74.44 Aligned_cols=307 Identities=15% Similarity=0.112 Sum_probs=164.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHH---HHHhhccCCchHHHHHHHHHHHccCCCCCchH-HHHHHH
Q 047146 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV---LSACSKLGDLSLGIKIHRYITDNHFNLSPDVF-IHNALI 266 (608)
Q Consensus 191 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~-~~~~li 266 (608)
--+-..+...|++.+|+.-|....+. |+..|.++ ...|...|+-..|..-+..+++.. ||-. ....-.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----pDF~~ARiQRg 113 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----PDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----ccHHHHHHHhc
Confidence 34555666677777777777766542 33333333 335666677777777777766653 2321 111223
Q ss_pred HHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHH
Q 047146 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346 (608)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 346 (608)
..+.+.|.+++|..=|+.+...++. +|...+|-+-+....+ .......+..+...|+...++.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHH
Confidence 3456666666666666655532210 0000111110000000 0112223333445566666666
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhh---cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 047146 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS---MKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE 423 (608)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 423 (608)
....++... +.|...+..-..+|...|++..|+.-+.. +...+....-.+-..+...|+.+.++...++-.+ +.
T Consensus 177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 666665543 34555666667777777777777655543 3345666666666677777777777777777666 56
Q ss_pred CCHH-HHHH---H---------HHHHhccccHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHH
Q 047146 424 PDEV-TFVG---V---------LSACSHAGLVEEGCKHFLDMSRVYNLQPQ-----TEHYGCMVDLFGRAGLIREALDLI 485 (608)
Q Consensus 424 p~~~-~~~~---l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~ 485 (608)
||.. .|.. + +......+++.++.+..+...+ ..|. ...+..+-.++...|++.+|++..
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 6653 1111 0 0112333455555555555544 2333 122334445556666777777766
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 486 KSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 486 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.+. .+.|| ..++---..+|.-...++.|++-++++.+.++++.
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 665 55554 45555555666666677777777777777777665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-08 Score=91.51 Aligned_cols=189 Identities=9% Similarity=0.035 Sum_probs=131.3
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHhhcC-CC---ChhHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047146 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMK-CR---DVYSYT-AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV 432 (608)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~---~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 432 (608)
|.......+...+...++-+.+..-+++.. ++ +..++. .....+...|++++|++++.+- .+.......
T Consensus 64 ~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~ 137 (290)
T PF04733_consen 64 PELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALA 137 (290)
T ss_dssp CCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHH
Confidence 333333333333333345555655555443 22 112222 2234566789999999887642 355677778
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF----GRAGLIREALDLIKSM--PLVPDAFVWGALLGACKI 506 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 506 (608)
+..+.+.++++.|.+.++.|.+ +..|. +...++.++ .-.+.+.+|..+|+++ ...+++.+.+.+..++..
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 8999999999999999999976 34443 333344433 3345799999999999 445788899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCh-HHHHHHHHHHHh
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW-KEALKLRKKMKE 556 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 556 (608)
.|++++|..+++++.+.+|.++.+...++-+....|+. +.+.+++.+++.
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 678888988875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-05 Score=77.82 Aligned_cols=411 Identities=11% Similarity=0.073 Sum_probs=245.4
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHH--HHHH--H
Q 047146 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTL--IQAY--V 198 (608)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--i~~~--~ 198 (608)
=+.-....+++++|.+....++..+ +.+...+..=+-+..+.+++++|+.+.+. ... ..+++.. =.+| .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk----~~~--~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK----NGA--LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh----cch--hhhcchhhHHHHHHHH
Confidence 3445667789999999999998866 44566677777778899999999977765 221 1122222 3444 4
Q ss_pred hCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHH
Q 047146 199 KMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277 (608)
Q Consensus 199 ~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 277 (608)
+.+..++|+..++ |..++ ..+...-...|.+.|++++|..+|+.+.+.+.+.. +...-..++.+-. .-.
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~-d~~~r~nl~a~~a----~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ-DEERRANLLAVAA----ALQ 160 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHH----hhh
Confidence 7889999999988 33333 33666667788999999999999999988754321 2222223322211 111
Q ss_pred HHHHHccCCCCChhhHHHH---HHHHHhcCChhHHHHHHHHHHhCCC------CCChH--------HHHHHHHHHhccCC
Q 047146 278 ARKVFDEMPVKNVVSWNSM---IAGLTHRGQFKEALDIFRRMQGLGL------KPDDF--------TLVCVLNSCANIGW 340 (608)
Q Consensus 278 A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--------t~~~ll~~~~~~~~ 340 (608)
+. +.+..+.....+|..+ ...+...|++.+|+++++.....+. .-+.. .-..+.-++...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 21 3444443333344433 3456788999999999998833211 11111 12233445668899
Q ss_pred hHHHHHHHHHHHHcCCCCchh---HHHHHHHHhHhcCCHH-HHHHHHhhcCCCC--------------hhHHHH-HHHHH
Q 047146 341 LELGKWVHTYLDKNHINTDGF---IGNALVDMYAKCGRID-QAFGVFRSMKCRD--------------VYSYTA-MIVGL 401 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~-~A~~~~~~~~~~~--------------~~~~~~-li~~~ 401 (608)
..+|..++..+++......+. ..|.|+.+-....-++ .++..++...... .+..|. ++..|
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877433322 2233333221111111 2333333332211 111222 22222
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA--GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 478 (608)
. +.-+.+.++...... ..|. ..+..++..+.+. ....++..++....+ +.+- ...+.-.++......|++
T Consensus 320 t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred h--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCH
Confidence 2 223333333332221 2333 3455555544332 246777777777655 2222 245666778888999999
Q ss_pred HHHHHHHH--------hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhCC
Q 047146 479 REALDLIK--------SM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF----EPEG---DGAYILMTNIYSSKN 542 (608)
Q Consensus 479 ~~A~~~~~--------~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g 542 (608)
+.|.+++. .. .+.-.+.+..++...+.+.++.+.|..++..++.- .+.. ...+..++..-.+.|
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99999988 44 33445556667777788888888888888888753 2222 234556666667889
Q ss_pred ChHHHHHHHHHHHhCC
Q 047146 543 RWKEALKLRKKMKERK 558 (608)
Q Consensus 543 ~~~~A~~~~~~m~~~~ 558 (608)
+.++|..+++++.+.+
T Consensus 473 ~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFN 488 (652)
T ss_pred chHHHHHHHHHHHHhC
Confidence 9999999999998744
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-05 Score=79.60 Aligned_cols=256 Identities=12% Similarity=-0.007 Sum_probs=136.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHh----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 299 GLTHRGQFKEALDIFRRMQGLGLKPDD-FTLVCVLNSCA----NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 299 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
.+...|++++|.+.+++..+. .|+. ..+.. ...+. ..+....+.+.+.. .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 345566666666666666554 2322 22221 11111 12333333333332 1111122223334455566777
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccccHHHHHH
Q 047146 374 GRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPDE--VTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 374 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~ 447 (608)
|++++|...+++..+ .+...+..+...+...|++++|..++++...... .|+. ..+..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776653 3445666677777777888888887777765321 1222 234456667777788888888
Q ss_pred HHHHhHhhcCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 448 HFLDMSRVYNLQPQTEHY-G--CMVDLFGRAGLIREALDL---IKSM-PLVP---DAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
+++.........+..... + .++.-+...|....+.+. .... +..| ..........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 877765311111111111 1 222333333322222222 1111 1001 1122234556677888888888888
Q ss_pred HHHHhcCCC---------CCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 518 ENLVRFEPE---------GDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 518 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.+....-. ........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887653211 23355667777889999999999998887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-05 Score=77.04 Aligned_cols=298 Identities=14% Similarity=0.048 Sum_probs=142.8
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHhHH-HHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDGMIL-VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
...|..+...+...|+.+.+...+....+.. ..++.... ......+...|+++.+.+.++.+.+..+. +...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~ 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR---DLLALKL 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHH
Confidence 3446666666777777877766666654432 12222211 12223445678888888888888776433 3333331
Q ss_pred ---HHHHHHhcCChHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 047146 265 ---LIDMYLKCGNIPSARKVFDEMPVKN---VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338 (608)
Q Consensus 265 ---li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 338 (608)
+.......+..+.+.+.+......+ ......+...+...|++++|...+++..+.. +.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~---------- 151 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAV---------- 151 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHH----------
Confidence 1111222344455555554422211 2223344456666777777777777766642 2222333
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CCh--hHHHHHHHHHHHcCChHHHH
Q 047146 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDV--YSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~~~~~~A~ 411 (608)
..+..+|...|++++|...+++... ++. ..|..+...+...|++++|.
T Consensus 152 -------------------------~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 152 -------------------------HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred -------------------------HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 4444455555555555555554332 111 12334555566666666666
Q ss_pred HHHHHHHHCCCCCC-HHHH-H--HHHHHHhccccHHHHHHH--HHHhHhhcCC-CCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 412 DIFSEMSQVGIEPD-EVTF-V--GVLSACSHAGLVEEGCKH--FLDMSRVYNL-QPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 412 ~~~~~m~~~g~~p~-~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
.++++.......+. .... + .++.-+...|..+.+.++ .........- ..........+.++...|+.++|.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 66666543211111 1111 1 112222223322222221 1111110000 01111122455666777788888877
Q ss_pred HHhC-C-CCC---C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 485 IKSM-P-LVP---D------AFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 485 ~~~~-~-~~p---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
++.+ . ... . .........++...|+.++|.+.+..+...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7766 1 111 1 111122224467888999998888877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-06 Score=80.40 Aligned_cols=180 Identities=11% Similarity=-0.015 Sum_probs=117.3
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD-V---YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV----T 428 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~ 428 (608)
....+..+...+...|++++|...|+++.. |+ . ..+..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 445556667777778888888888876653 22 1 35566777777888888888888887763 34322 3
Q ss_pred HHHHHHHHhcc--------ccHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 047146 429 FVGVLSACSHA--------GLVEEGCKHFLDMSRVYNLQPQT-EHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499 (608)
Q Consensus 429 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 499 (608)
+..+..++... |+.++|.+.+..+.+. .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 44444445443 6677777777777662 3322 22222111100 00000 001124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+...+...|++++|...++++.+..|+++ ..+..++.+|.+.|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55678899999999999999999977654 688999999999999999999999887543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00013 Score=67.14 Aligned_cols=309 Identities=10% Similarity=0.046 Sum_probs=197.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHhHH-HHHHH
Q 047146 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI---QAYVKMDYPTEAILSFFDMCQANLRPDGMIL-VIVLS 230 (608)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~ 230 (608)
.--+-+.+...|++.+|+.-|.. .+..|+..|-++. ..|...|+..-|+.-+.+..+ ++||-..- ..-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHa----Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHA----AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH----HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 33445556667999999999988 6667777787775 467888999999988888877 57775432 22334
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
.+.+.|.++.|..-|+.+++..+........ +.+.--.++-+ .....+..+...|+...|+
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~ea-------qskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEA-------QSKLALIQEHW------------VLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHH-------HHHHHhHHHHH------------HHHHHHHHHhcCCchhhHH
Confidence 5678999999999999999875432111111 22111111111 1122344455566777777
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-- 388 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 388 (608)
+....+++.. +.|...+..-..+|...|.+..|+.=+..+.+..-..+ ...--+-..+...|+.+.++...++..+
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT-e~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT-EGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch-HHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 7777666642 45555555556666666766666655555544432222 2333455566667777777776666553
Q ss_pred CChh----HHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccccHHHHHHHHHHh
Q 047146 389 RDVY----SYTAM---------IVGLAIHGKAWKALDIFSEMSQVGIEPDEV---TFVGVLSACSHAGLVEEGCKHFLDM 452 (608)
Q Consensus 389 ~~~~----~~~~l---------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~ 452 (608)
||.. .|..+ +......+++.++++-.+...+........ .+..+-.++...|++.+|++...++
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 2221 11111 223456788889998888887753221223 3444555677889999999999988
Q ss_pred HhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047146 453 SRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD 493 (608)
Q Consensus 453 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 493 (608)
.. +.|+ +.++.--..+|.-..++++|+.-|+.. ...++
T Consensus 334 L~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 334 LD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred Hh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 65 5665 888888889999999999999999887 44443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-06 Score=77.33 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=88.9
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGAC-KIHAK--VELA 513 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a 513 (608)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566666666666655 23446778888888888888888888888877 5555 556666666653 56666 4888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.++++++++.+|+++.++..++..+.+.|++++|+..|+++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8888888888888888888888888888888888888888876443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=74.26 Aligned_cols=92 Identities=9% Similarity=-0.153 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444566666777777777777766 4444 56667777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHh
Q 047146 543 RWKEALKLRKKMKE 556 (608)
Q Consensus 543 ~~~~A~~~~~~m~~ 556 (608)
++++|+..+++..+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-06 Score=91.81 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=166.8
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-H
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-V 427 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~ 427 (608)
+.+...|-..|......++.++|++++++... .-...|.++++.-...|.-+...++|+++.+. .|+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 44556677778888889999999999987753 23468999998888889888999999999883 344 4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD---AFVWGALLGA 503 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 503 (608)
.|..|...|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..++.++ ..-|- .....-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 788888999999999999999999999655 66788999999999999999999999887 33343 3344455566
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
-.+.|+.++++.+|+..+...|.-...|+.+++.-.+.|..+.++.+|++....++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999999999999999999999999887764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00022 Score=72.98 Aligned_cols=377 Identities=12% Similarity=0.086 Sum_probs=198.3
Q ss_pred CceeHHHHHHH--HhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC---------CCC
Q 047146 116 NTYTLPYVLKA--CWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP---------QAQ 184 (608)
Q Consensus 116 ~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~ 184 (608)
|..|--.++.. |...|+.+.|.+-...+. +..+|..+.+++.+..+++-|.-.+-.|... ...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 44555555542 556677787766655443 3468888888888888888777776665432 111
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
++ ..-..........|..++|+.+|++-.+. ..+=+.|-..|.+++|.++-+.--+. . =..+|..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H---Lr~Tyy~ 863 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H---LRNTYYN 863 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e---hhhhHHH
Confidence 21 11122222334567777777777776542 23344556677777777765443222 1 1234444
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHH
Q 047146 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 344 (608)
...-+-..++.+.|++.|++...+--..+..|. .++.......+++ .|...|..-..-.-..|+.+.|
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHH
Confidence 555555567777777777765432111111110 1111111222222 2333444444555566777777
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
..++..+... -++++..|-.|+.++|-++-++- .|....-.+...|-..|++.+|+.+|-+.+.
T Consensus 932 l~~Y~~A~D~---------fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa----- 995 (1416)
T KOG3617|consen 932 LSFYSSAKDY---------FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA----- 995 (1416)
T ss_pred HHHHHHhhhh---------hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----
Confidence 7776665432 45556666667777776665543 3445555566666667777777776666542
Q ss_pred CHHHHHHHHHHHhcc---------------ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH-HHhC
Q 047146 425 DEVTFVGVLSACSHA---------------GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL-IKSM 488 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~---------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~ 488 (608)
|...|+.|-.. .+.-.|.++|++. |.. ...-+..|-++|.+.+|+++ |+.-
T Consensus 996 ----fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 996 ----FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred ----HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhc
Confidence 22222222222 2233333344333 111 12234456666666666654 2211
Q ss_pred ----------CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------c-CCCC-------
Q 047146 489 ----------PLV--PDAFVWGALLGACKIHAKVELAEIVMENLVR---------------------F-EPEG------- 527 (608)
Q Consensus 489 ----------~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------~-~p~~------- 527 (608)
.+. .|+...+-....+..+.++++|..++-.+++ + -|..
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQ 1142 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHH
Confidence 122 2555555555555555666665555443332 1 1211
Q ss_pred --CchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 528 --DGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 528 --~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
......++..|.++|.+..|.+-|.+.
T Consensus 1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 136778899999999988887665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-05 Score=82.85 Aligned_cols=399 Identities=13% Similarity=0.001 Sum_probs=238.7
Q ss_pred cHHHHHHHHHHHHhCcCCcH-hHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHH
Q 047146 133 LRVGQQVHAYSMKTALLSNV-YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFF 211 (608)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 211 (608)
...+...|- ....+.++. ..|..|-..|...-+...|...|+...+ ...-|..++......|+...+++.|..+.-
T Consensus 474 ~~~al~ali--~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-LDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALI--RALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE-LDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHH--HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 344443333 333344443 4688888888888888999999988444 223467778899999999999999999843
Q ss_pred HHHHCC-CCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCCh
Q 047146 212 DMCQAN-LRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNV 290 (608)
Q Consensus 212 ~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 290 (608)
..-+.. ...-...|..+.-.+...++...+..-|+...+..+. |...|..+..+|.++|++..|.++|.+...-++
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 332211 0111122333344566788899999999999988655 889999999999999999999999988764443
Q ss_pred hhHH---HHHHHHHhcCChhHHHHHHHHHHhC------CCCCChHHHHHHHHHHhccCChHHHHHHHHHHH-------Hc
Q 047146 291 VSWN---SMIAGLTHRGQFKEALDIFRRMQGL------GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD-------KN 354 (608)
Q Consensus 291 ~~~~---~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~ 354 (608)
..+. .....-+..|.+.+|+..+...... +..--..++..+...+...|-..++..+++..+ ..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3322 2223456789999999998877553 111222344444444444444444444443322 22
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCCh---H---HHHHHHHHHHHCCCCCC
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDV---YSYTAMIVGLAIHGKA---W---KALDIFSEMSQVGIEPD 425 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~---~---~A~~~~~~m~~~g~~p~ 425 (608)
....+...+-.+ .+|..+|-... |+. ....++..-+-..+.. + -+.+.+-.-.. ...+
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~ 774 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIH 774 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhc
Confidence 111222222111 23334444443 331 1111111111111111 1 01111111111 1122
Q ss_pred HHHHHHHHHHHhc-------cc-cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 047146 426 EVTFVGVLSACSH-------AG-LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAF 495 (608)
Q Consensus 426 ~~~~~~ll~~~~~-------~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 495 (608)
..+|..++..+.+ .+ +...|...++..++ --..+...|+.|.-+ ...|.+.-|..-|-.- -..| ...
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh
Confidence 3344444433322 22 23467777777766 223455667766555 5556666666655544 2233 677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
+|..+...|.+..+++-|.+.+.+.+.+.|.+...|...+.+....|+.-++..+|..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8888888888999999999999999999999998898888888888988888888877
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-05 Score=74.62 Aligned_cols=166 Identities=16% Similarity=0.091 Sum_probs=95.8
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEE 444 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 444 (608)
+..+|.+.++++.|+..|.+...+... -....+....++++.......- +.|... -...-.+.+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 334666667777777777764321000 0111222334444444444433 233321 12222555677778888
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
|...|.+++.. -+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|.--..++....+++.|.+.+++.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877777762 2346677777777778888777777765555 33443 23344344555666778888888888888
Q ss_pred cCCCCCchHHHHHHHHHh
Q 047146 523 FEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 523 ~~p~~~~~~~~l~~~~~~ 540 (608)
.+|++......+..++..
T Consensus 455 ~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 888777655555555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-05 Score=87.08 Aligned_cols=323 Identities=10% Similarity=-0.005 Sum_probs=187.8
Q ss_pred hccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC----CC----C--h--hhHHHHHHHH
Q 047146 233 SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP----VK----N--V--VSWNSMIAGL 300 (608)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~----~--~--~~~~~li~~~ 300 (608)
...|+++.+..++..+....... +..........+...|++++|...+.... .. + . .....+...+
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~--~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLE--NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhc--CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34566666555555432111111 22233444555567788888877776542 11 1 1 1112233445
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCh----HHHHHHHHHHhccCChHHHHHHHHHHHHc----CC-CCchhHHHHHHHHhH
Q 047146 301 THRGQFKEALDIFRRMQGLGLKPDD----FTLVCVLNSCANIGWLELGKWVHTYLDKN----HI-NTDGFIGNALVDMYA 371 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 371 (608)
...|++++|...+++..+.--..+. .....+...+...|+++.|...+...... |. .........+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788888888888887653111121 23344445566788888888887776542 11 111234455666777
Q ss_pred hcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 047146 372 KCGRIDQAFGVFRSMKC-------R----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV--GIEPD--EVTFVGVLSAC 436 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~ 436 (608)
..|+++.|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 88999888887765431 1 1123444555667779999998888876542 11122 22444455567
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHY-----GCMVDLFGRAGLIREALDLIKSMPL-V-PDA----FVWGALLGACK 505 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~ 505 (608)
...|+.++|.+.+...............+ ...+..+...|+.+.|.+++..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 77888888888887775421111111111 1122444567888888888876621 1 111 11344556778
Q ss_pred HcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 506 IHAKVELAEIVMENLVRFEP------EGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
..|++++|...++++.+... ....++..++.+|.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999888888876521 12235667788888999999998888888753
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00042 Score=70.06 Aligned_cols=193 Identities=17% Similarity=0.214 Sum_probs=94.5
Q ss_pred HHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHH
Q 047146 230 SACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEA 309 (608)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 309 (608)
.+......+.+|..+++.+.... . ....|..+.+-|...|+++.|+++|.+.. .++--|..|.+.|+|..|
T Consensus 740 eaai~akew~kai~ildniqdqk--~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--T--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--c--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 34444555566666665555442 1 23344555556666666666666664432 234445556666666666
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCC
Q 047146 310 LDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCR 389 (608)
Q Consensus 310 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 389 (608)
.++-.+.. | .......|-+-..-+-+.|++.+|++++-.+..|
T Consensus 811 ~kla~e~~--~-----------------------------------~e~t~~~yiakaedldehgkf~eaeqlyiti~~p 853 (1636)
T KOG3616|consen 811 FKLAEECH--G-----------------------------------PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP 853 (1636)
T ss_pred HHHHHHhc--C-----------------------------------chhHHHHHHHhHHhHHhhcchhhhhheeEEccCc
Confidence 55543332 1 1122222233333334455555555555555555
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC 467 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 467 (608)
+. .|+.|-++|..+..+++..+- .|+. .|-..+..-+...|+++.|...|-+... |.+
T Consensus 854 ~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~ka 913 (1636)
T KOG3616|consen 854 DK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKA 913 (1636)
T ss_pred hH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHH
Confidence 43 244555556655555554442 2221 2444444455555566555555544432 334
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 047146 468 MVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~ 488 (608)
-+++|...+.|++|-++-+.-
T Consensus 914 avnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred HHHHhhhhhhHHHHHHHHhcc
Confidence 455555555555555554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00024 Score=80.38 Aligned_cols=331 Identities=9% Similarity=0.003 Sum_probs=206.5
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCC----CCc--hHHHHHHHHHH
Q 047146 196 AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL----SPD--VFIHNALIDMY 269 (608)
Q Consensus 196 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~p~--~~~~~~li~~~ 269 (608)
.....|+++.+..++..+.......+..........+...|+++++...+......-... .|. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777776665222111222223334445567889999999988776531111 011 12223344556
Q ss_pred HhcCChHHHHHHHccCC----CCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--hHHHHHHHHHHh
Q 047146 270 LKCGNIPSARKVFDEMP----VKNV----VSWNSMIAGLTHRGQFKEALDIFRRMQGLGL---KPD--DFTLVCVLNSCA 336 (608)
Q Consensus 270 ~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~ 336 (608)
...|++++|...+++.. ..+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 78999999998887643 2221 2345566677889999999999988765311 111 234445566678
Q ss_pred ccCChHHHHHHHHHHHH----cCCCC---chhHHHHHHHHhHhcCCHHHHHHHHhhcCC------C--ChhHHHHHHHHH
Q 047146 337 NIGWLELGKWVHTYLDK----NHINT---DGFIGNALVDMYAKCGRIDQAFGVFRSMKC------R--DVYSYTAMIVGL 401 (608)
Q Consensus 337 ~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~ 401 (608)
..|+++.|...+..... .+... ....+..+...+...|++++|...+.+... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998877654 22211 223344566677788999999988876532 1 123444566678
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHhccccHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEP-DEVTF-----VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ---TEHYGCMVDLF 472 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~ 472 (608)
...|++++|...+.+.....-.. ....+ ...+..+...|+.+.|.+.+...... ..... ...+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 88999999999998875421111 11111 11123345578999998887766441 11111 11235677888
Q ss_pred HhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 473 GRAGLIREALDLIKSM-------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
...|+.++|...+++. +..++ ..+...+..++...|+.++|...+.++.++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 8999999999988876 22222 2355566678899999999999999999886443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00015 Score=75.91 Aligned_cols=445 Identities=13% Similarity=0.071 Sum_probs=246.6
Q ss_pred cchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCc-CCcHhHHHHHHH
Q 047146 83 VYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTAL-LSNVYVFNTLMR 160 (608)
Q Consensus 83 ~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~ 160 (608)
...|..|-..|....+... .+.|+...+-.. .+........+.+++..+++.|..+.-..-+... ..-..-|-..--
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 3567777777665554444 666766655432 2455666677777777777777776222211110 001112222333
Q ss_pred HHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHH--HHHhhccCCc
Q 047146 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIV--LSACSKLGDL 238 (608)
Q Consensus 161 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l--l~~~~~~~~~ 238 (608)
.|.+.++...|..-|+..... -+.|...|..+..+|...|.+..|+++|.+... +.|+.. |... .-.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhH
Confidence 466677777777777764442 234667777788888888888888888877655 344432 2211 1123456777
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHH-------HhcCChHHHHHHHccCC-----------CCChhhHHHHHHHH
Q 047146 239 SLGIKIHRYITDNHFNLSPDVFIHNALIDMY-------LKCGNIPSARKVFDEMP-----------VKNVVSWNSMIAGL 300 (608)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~-------~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~ 300 (608)
.++...+..++...-. -....+.+...+ .-.|-...|.++|+.-. ..+...|-.+
T Consensus 647 keald~l~~ii~~~s~---e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a---- 719 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSL---ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA---- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----
Confidence 7777777766653211 122222222222 22233333333333211 0111222221
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCCh---H---HHHHHHHHHHHcCCCCchhHHHHHHHHhHh--
Q 047146 301 THRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWL---E---LGKWVHTYLDKNHINTDGFIGNALVDMYAK-- 372 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 372 (608)
..|..+|-... .. .|+......+..-.-..+.. + .|.+.+ ........+...+..|+.-|.+
T Consensus 720 ------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 720 ------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred ------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhhccchHHHHhHHHHHHH
Confidence 12222333222 11 22222222222112222222 1 011100 0011111123333333333322
Q ss_pred --cC----CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccH
Q 047146 373 --CG----RIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLV 442 (608)
Q Consensus 373 --~g----~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 442 (608)
+| +...|...+.... ..+...||+|.-. ...|++.-|...|-+-... .| +..+|..+.-.|.+..++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccH
Confidence 22 2345666666443 4677888888665 5567777777777666553 44 556888888889999999
Q ss_pred HHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047146 443 EEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-------PLVPDAFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 443 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~ 514 (608)
+.|...|...+. +.| +...|-.........|+.-++..+|..- +-.|+...|..........|++++-+
T Consensus 867 E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 867 EHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred HHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 999999998865 455 5666766666666788888888888762 44567777776666666777666544
Q ss_pred H----------HHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 515 I----------VMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 515 ~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
. .+++.....|+...+|...+....+.+.+.+|.++..+..
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3 4445555678888899999999999999988888777653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-05 Score=70.22 Aligned_cols=289 Identities=11% Similarity=-0.015 Sum_probs=184.8
Q ss_pred HHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHH-HHHHH
Q 047146 86 YNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTL-MRLYA 163 (608)
Q Consensus 86 ~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~ 163 (608)
+++.+.-+.+..++.. ++++..-.+...+ +....+.+--.|-...++..|-..++++-.. .|...-|... ...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5666666777788888 8888877766422 5666777777777888999999999888764 3555444332 24456
Q ss_pred hcCCHHHHHHHhcccCCCCCCCCcchHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHH
Q 047146 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ--AYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLG 241 (608)
Q Consensus 164 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 241 (608)
+.+.+.+|+++...|... ++...-..-+. ...+.+++..+..++++....| +..+.+...-...+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 789999999999886442 22222222222 2345788888988888875432 444555555556789999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCC-----------------Ch--------------
Q 047146 242 IKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVK-----------------NV-------------- 290 (608)
Q Consensus 242 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------~~-------------- 290 (608)
.+-|+...+.+ +.. ....|+. .-+..+.|+++.|++...++.++ |+
T Consensus 164 vqkFqaAlqvs-Gyq-pllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 164 VQKFQAALQVS-GYQ-PLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHhhc-CCC-chhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999999875 432 3445554 44566789999999998887632 11
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 291 -VSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 291 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
..+|.-...+.+.|+++.|.+.+.+|.-. .-..|++|...+.-.= ..+++..+.+-+..+...+. ....++..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 12333334456778888888888777432 1234566655443221 22334444444455555443 44556667777
Q ss_pred HhHhcCCHHHHHHHHhhcCC
Q 047146 369 MYAKCGRIDQAFGVFRSMKC 388 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~ 388 (608)
.||+..-++.|-.++.+-..
T Consensus 319 lyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcc
Confidence 88888888888887766543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-05 Score=79.03 Aligned_cols=247 Identities=15% Similarity=0.091 Sum_probs=173.9
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChh
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 307 (608)
-+.+.|++.+|.-.|+..++..+. +...|.-|.......++-..|+..+.+.. +.|....-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 345778888888888888888655 77888888888888888888888887765 345666777778888899889
Q ss_pred HHHHHHHHHHhCCCC-----C---ChHHHHHHHHHHhccCChHHHHHHHH-HHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047146 308 EALDIFRRMQGLGLK-----P---DDFTLVCVLNSCANIGWLELGKWVHT-YLDKNHINTDGFIGNALVDMYAKCGRIDQ 378 (608)
Q Consensus 308 ~A~~~~~~m~~~g~~-----p---~~~t~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (608)
.|+..|++.+....+ + +..+-.. ........+....++|- .....+...|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999888664310 0 0000000 11111122333444444 44455656888888999999999999999
Q ss_pred HHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 379 AFGVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 379 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
|.+.|+.... | |...||.|...++...+.++|+..|++..+ ++|+-+ ....|.-+|...|.+++|.+.|-.+..
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999998763 4 678999999999999999999999999998 789865 666677789999999999988877755
Q ss_pred hcCC--------CCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 455 VYNL--------QPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 455 ~~~~--------~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
-... .++...|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1110 01224555555555555555544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-06 Score=72.13 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=95.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 047146 412 DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-P 489 (608)
Q Consensus 412 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 489 (608)
.++++..+ +.|+. +.....++...|++++|...|..+.. ..| +...|..+..++.+.|++++|...|+.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45554 44566777888899999888888876 344 6778888888899999999999998888 4
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 490 LVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 490 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
..| +...+..+..++...|++++|...++++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 455 67788888888999999999999999999999999888877766554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-07 Score=56.78 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=16.1
Q ss_pred CcCCcHhHHHHHHHHHHhcCCHHHHHHHhccc
Q 047146 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFR 178 (608)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 178 (608)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.2e-05 Score=72.73 Aligned_cols=177 Identities=9% Similarity=0.012 Sum_probs=112.3
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHH
Q 047146 375 RIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKA--WKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 375 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
++++++..++++.+ ++..+|+.....+.+.|+. ++++.+++++.+. .| |..+|.....++...|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45666666665542 3445566555455555542 5667777777763 44 445777777777777777777777
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHH
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRA---GLI----REALDLIKSM-PLVP-DAFVWGALLGACKIH----AKVELAEI 515 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~ 515 (608)
+.++++. -.-+...|+....++.+. |.. ++++++..++ ...| |...|+.+...+... +...+|..
T Consensus 165 ~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 7777662 122455555555444443 222 3556665444 4455 666777777777663 34566888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhCC------------------ChHHHHHHHHHHH
Q 047146 516 VMENLVRFEPEGDGAYILMTNIYSSKN------------------RWKEALKLRKKMK 555 (608)
Q Consensus 516 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 555 (608)
...++...+|.++.+...|+++|.... ..++|.++++.+.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888888888888889999998643 2367888888873
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0016 Score=63.97 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=58.1
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLS 434 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 434 (608)
.+|..+++.-.+..-++.|..+|.+..+ .++...++++.-||. ++..-|.++|+--.+. -+|. .-....+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHH
Confidence 3444455555555555555555555442 134444445444442 3445555555443332 2222 22233344
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQ--TEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
-+...++-..+..+|+++... ++.|+ ...|..+++-=...|+...+.++-+++
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 445555555555555555552 34433 345555555555555555555554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-05 Score=79.03 Aligned_cols=213 Identities=14% Similarity=0.130 Sum_probs=174.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 337 (608)
--..-..+...+.+.|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.+. +||...|..+......
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3445567888899999999999999885 57888999999999999999999888883 7999999999888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 047146 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIF 414 (608)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 414 (608)
..-+++|.++.++.... .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.+++..|.+.|
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 88888888888765332 112222333457899999999986543 34578888888889999999999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 415 SEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 415 ~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
.+-.. ..||.. .|+.+-.++.+.++-.+|...+.+..+ ++ .-+...|...+-...+.|.+++|++.+.++
T Consensus 543 ~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 543 HRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99888 688765 899999999999999999999999988 55 445567777788888999999999999887
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-05 Score=70.58 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
..+-..+...|+-+....+....... ..-|.......+......|++.+|...+.++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555666666666665554432 122333444466666667777777777776665 445566777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 047146 475 AGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|..++.......+.++.+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777776666655 4444 455666666666677777777777777776666666677777777777777777766654
Q ss_pred H
Q 047146 553 K 553 (608)
Q Consensus 553 ~ 553 (608)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-07 Score=54.79 Aligned_cols=33 Identities=42% Similarity=0.664 Sum_probs=23.8
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 387 (608)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777763
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-05 Score=69.52 Aligned_cols=154 Identities=9% Similarity=0.066 Sum_probs=116.5
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 445 (608)
-+-.|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456788888877655544333221 01223566778888888877742 34566889999999999999999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047146 446 CKHFLDMSRVYNLQP-QTEHYGCMVDLF-GRAGL--IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMEN 519 (608)
Q Consensus 446 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 519 (608)
...|++..+ +.| +...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999977 345 677888888864 67777 59999999998 5566 677888888999999999999999999
Q ss_pred HHhcCCCCCchH
Q 047146 520 LVRFEPEGDGAY 531 (608)
Q Consensus 520 ~~~~~p~~~~~~ 531 (608)
+++..|++..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998876443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.7e-05 Score=82.17 Aligned_cols=225 Identities=17% Similarity=0.118 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCh---HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDD---FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (608)
..|-..|.-..+.++.++|.+++++.+.. ++.-.. ..|.+++..-..-|.-+...++|+.+.+.. ..-.+|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34555555555555555555555555432 111111 123333333333333444444444443322 223455677
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--H-HHHHHHHHHHhccc
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD--E-VTFVGVLSACSHAG 440 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~-~~~~~ll~~~~~~g 440 (608)
...|.+.+..++|.++++.|.+ .....|...+..+.++++.+.|..++.+..+. -|. . ....-.+..-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcC
Confidence 7788888888888888888764 35677888888888888888888888887774 343 2 24444555566778
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM---PLVP--DAFVWGALLGACKIHAKVELAEI 515 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~ 515 (608)
+.+++..+|+.... ..+.....|+.++++-.+.|+.+.+..+|++. ++.| --..|.-.+.--..+|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 88888888888876 34446778888888888888888888888887 3433 23355555555556666655555
Q ss_pred HHHHHH
Q 047146 516 VMENLV 521 (608)
Q Consensus 516 ~~~~~~ 521 (608)
+=.++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 544443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-05 Score=72.71 Aligned_cols=183 Identities=13% Similarity=0.017 Sum_probs=127.5
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC-hh---HH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD-VY---SY 394 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~ 394 (608)
.....+......+...|+++.|...++.+.+..... ....+..+..+|.+.|++++|...++.+.+ |+ .. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345567777788899999999999999988765321 124667788999999999999999998863 32 22 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHH
Q 047146 395 TAMIVGLAIH--------GKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465 (608)
Q Consensus 395 ~~li~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 465 (608)
..+..++.+. |++++|.+.|+++... .|+.. ....+..... ... ... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH---------HHH
Confidence 5555566554 7889999999999884 56543 2222211100 000 000 012
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PL---VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
..+...|.+.|++++|+..+++. .. .| ....+..+..++...|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 25667788999999999988887 22 23 3567888889999999999999988888766553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00021 Score=63.61 Aligned_cols=174 Identities=14% Similarity=0.061 Sum_probs=104.9
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 427 (608)
.+.+.......+......-...|+..|++++|++..+... +....-.=...+.+..+.+-|.+.+++|.+ --+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHH
Confidence 3333333333333333334456777788888887777632 333333334455666777777778887776 22455
Q ss_pred HHHHHHHHHhc----cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047146 428 TFVGVLSACSH----AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALL 501 (608)
Q Consensus 428 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 501 (608)
|.+.|.+++.+ .+.+..|.-+|+++.+ ...|+..+.+....++...|++++|..++++. ....++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 66666655443 3457777777777765 46677777777777777777777777777776 3333566666666
Q ss_pred HHHHHcCCH-HHHHHHHHHHHhcCCCCC
Q 047146 502 GACKIHAKV-ELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 502 ~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 528 (608)
......|.. +.-.+.+.++....|..+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 555555544 334456666666666654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-05 Score=80.89 Aligned_cols=159 Identities=10% Similarity=0.003 Sum_probs=115.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGC 467 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 467 (608)
++..+..|.....+.|++++|..+++...+ +.|+.. ....+...+.+.+.+++|....+.... ..| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 467777788888888888888888888888 577664 667777788888888888888888866 344 4666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChH
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 545 (608)
+..++.+.|++++|.++|++. ...| +..++..+..++...|+.++|...|+++.+...+....|+.+. +++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 888888888888888888887 3344 4667888888888888888888888888887666555554433 2333
Q ss_pred HHHHHHHHHHhCCC
Q 047146 546 EALKLRKKMKERKV 559 (608)
Q Consensus 546 ~A~~~~~~m~~~~~ 559 (608)
.-..+++++.-.+.
T Consensus 234 ~~~~~~~~~~~~~~ 247 (694)
T PRK15179 234 ADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHcCcccc
Confidence 34455666544333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0027 Score=62.38 Aligned_cols=147 Identities=11% Similarity=0.068 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 407 AWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 407 ~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
.+.....++++...- ++|+ .+|..+++...+..-++.|..+|.++.++ +..+ ++.++++++.-|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 444555555555421 2222 36666777777777778888888887774 4444 6667777777655 4566777777
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-CCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 485 IKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF--EPE-GDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 485 ~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
|+-- ....++..-...+.-+...++-..++.+|++++.. .|+ ...+|..++.-=..-|+...+.++=+++..
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7765 22223444455566667777777788888877766 222 224777777777777877777777666643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=80.62 Aligned_cols=190 Identities=14% Similarity=0.112 Sum_probs=105.6
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 436 (608)
+|-...-..+...+...|-...|..+|+++ ..|.-.|-.|+..|+..+|..+..+..+ -+||...|..++...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333334444445555555555555555543 2444444455555555555555444444 244444444444444
Q ss_pred hcc----------------------------ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047146 437 SHA----------------------------GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKS 487 (608)
Q Consensus 437 ~~~----------------------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (608)
... ++++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|..
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 333 455555555554433 222 345555556666666666666666665
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 488 M-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 488 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
. ...| +...|+.+-.+|.+.++-.+|...+.++.+-+-.+...|-...-+..+.|.|++|.+.+.++.+
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5 4455 3446777777777777777777777777666655555666666666677777777777766654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.4e-06 Score=67.13 Aligned_cols=96 Identities=11% Similarity=-0.012 Sum_probs=86.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
+....-.+...+...|++++|.++|+-. .+.| +...|-.|...|...|++++|+..+.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455566777788999999999999988 5556 6778889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHh
Q 047146 539 SSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 539 ~~~g~~~~A~~~~~~m~~ 556 (608)
...|+.+.|++.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998875
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.1e-05 Score=67.52 Aligned_cols=135 Identities=12% Similarity=0.074 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 047146 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGAL 500 (608)
Q Consensus 423 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 500 (608)
.|+......+-.++.-.|+-+....+...... ....+......++....+.|++.+|...+++. .-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433225566677778888887777666543 33446667777999999999999999999998 445699999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.-+|.+.|+.+.|...+.++.++.|.++.+++.|+..|.-.|++++|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999876554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00013 Score=64.33 Aligned_cols=178 Identities=11% Similarity=0.111 Sum_probs=92.6
Q ss_pred CCHHHHHHHHhhcCC--------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccccHH
Q 047146 374 GRIDQAFGVFRSMKC--------RDV-YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV-LSACSHAGLVE 443 (608)
Q Consensus 374 g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~ 443 (608)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 456666666655541 111 12333333444556666666666666554 2 433221111 12234456666
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
+|+++++.+.++ -+.|..++-.-+-+.-..|+.-+|++-+.+. .+..|...|.-+...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 666666666552 1234445544444455555555555554444 333466666666666666666666666666666
Q ss_pred hcCCCCCchHHHHHHHHHhCCC---hHHHHHHHHHHH
Q 047146 522 RFEPEGDGAYILMTNIYSSKNR---WKEALKLRKKMK 555 (608)
Q Consensus 522 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~ 555 (608)
=..|-++..+..+++++.-.|. .+-|.+++.+..
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666666566666666554442 334455554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-05 Score=77.32 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGAC 504 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 504 (608)
.....++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34555666677778888888888888762 244 4455777787888888888888877 3344 666666667788
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
...++++.|..+.+++.+..|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=67.07 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
......+...+...|++++|.+.++.. ...| +...|..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666666777777777777665 3334 55666666677777777777777777777777777777777777777
Q ss_pred hCCChHHHHHHHHHHHhC
Q 047146 540 SKNRWKEALKLRKKMKER 557 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~~ 557 (608)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.9e-05 Score=70.83 Aligned_cols=192 Identities=7% Similarity=0.027 Sum_probs=140.9
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccc
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAIHG-KAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAG 440 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 440 (608)
+-.++...++.++|+.+.+.+.+. +..+|+..-.++...| ++++++..++++.+. .|+ ..+|..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 334455667888888888877642 4456776666677777 679999999999985 443 346665555556666
Q ss_pred cH--HHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CC----
Q 047146 441 LV--EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIH---AK---- 509 (608)
Q Consensus 441 ~~--~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~---- 509 (608)
.. +++..+++++.+ .-+-+..+|+...-++.+.|+++++++.++++ ...| |...|+.....+.+. |.
T Consensus 121 ~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 53 677888888876 22336788998888999999999999999998 4444 677787776665544 22
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC----CChHHHHHHHHHHHhCCCcc
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSK----NRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~~ 561 (608)
.+++.....++++..|++.++|..+..++... ++..+|.+.+.+..+.+++.
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 35678888899999999999999999999883 44567888888876655443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00052 Score=66.65 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=103.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT-FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 474 (608)
....+...|.+++|+..++.+... .||... .......+.+.++.++|.+.++++.. ..|+ ....-.+..+|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHh
Confidence 334455678888888888888774 665554 44445568888888888888888876 4555 5566677888888
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 047146 475 AGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 475 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
.|++.+|+.+++.. ..+-|+..|..|..+|...|+..++.... +..|...|+|++|+..+.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHH
Confidence 88888888888877 33347788888888888888877665544 445778888888888888
Q ss_pred HHHhCC
Q 047146 553 KMKERK 558 (608)
Q Consensus 553 ~m~~~~ 558 (608)
...++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 887654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00018 Score=69.72 Aligned_cols=180 Identities=17% Similarity=0.082 Sum_probs=132.5
Q ss_pred CCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 047146 374 GRIDQAFGVFRSMKC------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 374 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 447 (608)
.++.++...-+.++. ++...+...+.+.........+-.++.+-.+. .-...-|... ......|.++.|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHH
Confidence 355566666666653 45555666666554433333333333222221 1112233333 34556799999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEP 525 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 525 (608)
.+..+.. ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999887 34456777788899999999999999999998 67786 66777788999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 526 EGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 526 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+++..|..|+.+|...|+..++..-.-++....
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 999999999999999999999999888876543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00032 Score=74.44 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=118.0
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFV 430 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~ 430 (608)
..+.++..+..|.....+.|++++|+.+++...+ | +...+..++.++.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 4566788888999999999999999999998874 4 456788889999999999999999999998 477654 667
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALL 501 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 501 (608)
.+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|+.. ...|....|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 777789999999999999999987 23334788999999999999999999999988 3344455554443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00039 Score=74.59 Aligned_cols=128 Identities=6% Similarity=0.044 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 471 (608)
.+..+..+|-+.|+.++|..+++++.+. .| |..+.+.+.-.++.. ++++|.+++.++...
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------
Confidence 4555555666666666666666666653 23 334555555555555 666666665555441
Q ss_pred HHhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 472 FGRAGLIREALDLIKSM----------------------PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
|...+++.++.++|.++ +...-..++--+-.-|...++++++..+++.+++.+|.|..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 22233333344433333 11223344445556678888999999999999999999988
Q ss_pred hHHHHHHHHH
Q 047146 530 AYILMTNIYS 539 (608)
Q Consensus 530 ~~~~l~~~~~ 539 (608)
+...++..|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 8888888887
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0023 Score=68.95 Aligned_cols=234 Identities=11% Similarity=0.043 Sum_probs=134.8
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHh
Q 047146 223 MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTH 302 (608)
Q Consensus 223 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 302 (608)
..+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .++.....
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 34556666666666666666666655554322 222233333355555554443322 33333444
Q ss_pred cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047146 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382 (608)
Q Consensus 303 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 382 (608)
..++.-+..+...|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.++.+.|.+...|... ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 44454444444444442 2334466666777777777777777777777766 56677778888888877 88888877
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC
Q 047146 383 FRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ 461 (608)
Q Consensus 383 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 461 (608)
+.+. +..|...+++.++.++|.++... .|+.. .|..++ +.+....+..--
T Consensus 172 ~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~~~~~~~ 222 (906)
T PRK14720 172 LKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGHREFTRL 222 (906)
T ss_pred HHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhhhccchh
Confidence 6653 34477777888888888888874 44433 222222 222222222223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
..++--+-..|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 344555566677777788888888777 4444 4445555555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.4e-06 Score=50.82 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 047146 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDG 222 (608)
Q Consensus 188 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 222 (608)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00011 Score=71.95 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=104.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccc
Q 047146 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAG 440 (608)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 440 (608)
...+|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++..+. .| +...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 33566777778899999999999999877777778888898899999999999999874 44 4556666666788999
Q ss_pred cHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047146 441 LVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSMPLVP 492 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 492 (608)
+.+.|.++.+++.. ..| +..+|..|+.+|.+.|+++.|+-.++.++..|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999976 456 46799999999999999999999999986544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00064 Score=60.66 Aligned_cols=243 Identities=9% Similarity=0.063 Sum_probs=155.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 376 (608)
++-+.-.|.+..++..-...... +-+...-.-+-++|...|.+.... ..+.... .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 34455667787777766554433 233444444556666665543221 1121112 23333333333333333443
Q ss_pred HHH-HHHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 047146 377 DQA-FGVFRSMKCR----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLD 451 (608)
Q Consensus 377 ~~A-~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 451 (608)
+.- .++.+.+..+ +......-...|++.+++++|++...... ....... =+..+.+..+++.|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 332 2333333332 22333333456889999999999887622 2222222 24456778889999999999
Q ss_pred hHhhcCCCCChhHHHHHHHHHH----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 047146 452 MSRVYNLQPQTEHYGCMVDLFG----RAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEP 525 (608)
Q Consensus 452 ~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 525 (608)
|.+ + .+..+.+.|..++. -.+...+|.-+|+++ +..|++.+.+....++...|++++|..+++.++..++
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 977 1 34455665666554 456789999999999 4778999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhCCChHHH-HHHHHHHH
Q 047146 526 EGDGAYILMTNIYSSKNRWKEA-LKLRKKMK 555 (608)
Q Consensus 526 ~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 555 (608)
.++.+...++-.-...|+-.++ .+.+.+.+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999888888888887665 44555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.9e-06 Score=49.95 Aligned_cols=34 Identities=44% Similarity=0.772 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 425 (608)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00016 Score=60.52 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=84.9
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 047146 413 IFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL 490 (608)
Q Consensus 413 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 490 (608)
.+++... ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554 35543 35556667778888888888888888762 2346777888888888888898888888877 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 491 VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 491 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
.| +...+..+...+...|++++|...++++.+..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 5667777778888999999999999999999888764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.1e-06 Score=49.23 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 047146 187 LVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220 (608)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 220 (608)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999988887
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0013 Score=58.37 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=119.1
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAM---IVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG 440 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 440 (608)
..++-+...+|+.+.|...++++...=+.++... ..-+-..|++++|+++++.+.+.. +.|.+++..=+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3444555667778888877777653212222111 223456788999999999998864 345567776666777778
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIH---AKVELAEI 515 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~ 515 (608)
+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+.-. .+.+.+..
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888888877 47779999999999999999999999999998 4455 666666666555433 35678899
Q ss_pred HHHHHHhcCCCCCchHH
Q 047146 516 VMENLVRFEPEGDGAYI 532 (608)
Q Consensus 516 ~~~~~~~~~p~~~~~~~ 532 (608)
.+++++++.|.+...+.
T Consensus 213 yy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHhChHhHHHHH
Confidence 99999999996654433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0001 Score=72.55 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=63.8
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKV 510 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 510 (608)
...+...|++++|+..|.++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34455667777777777777651 2224556666666777777777777777666 4444 455666666667777777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHH
Q 047146 511 ELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 511 ~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
++|...+++++++.|+++.....+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 777777777777777766554444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.5e-05 Score=47.98 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0001 Score=56.94 Aligned_cols=94 Identities=24% Similarity=0.245 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
+..+...+...|++++|...+++. ...| +...+..+...+...+++++|...++.+.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677777888888888888876 4444 44667777788888899999999999999988888888889999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 047146 543 RWKEALKLRKKMKERK 558 (608)
Q Consensus 543 ~~~~A~~~~~~m~~~~ 558 (608)
++++|...+++..+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999988876543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00034 Score=59.16 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=55.6
Q ss_pred cccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA----FVWGALLGACKIHAKVEL 512 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~ 512 (608)
.++...+...++.+.++++-.| .....-.+...+...|++++|...|+.. ...||. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554321111 1122233445555556666666555555 212222 122334455556666666
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 513 AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
|...++.. ...+-.+..+..++++|.+.|++++|+..|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 11222333555666666666666666666654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00015 Score=58.99 Aligned_cols=93 Identities=16% Similarity=0.067 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEG---DGAYILMTN 536 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 536 (608)
+..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334445555555555555555554 22222 2234445555556666666666666666555553 234555556
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 047146 537 IYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 537 ~~~~~g~~~~A~~~~~~m~~~ 557 (608)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.9e-05 Score=55.84 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=45.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...|++++|...++++.+..|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999988764
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=2e-05 Score=59.40 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHH
Q 047146 475 AGLIREALDLIKSM-PLVP---DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 550 (608)
.|+++.|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 2222 344555566777777777777777777 555665555555667777777777777777
Q ss_pred HHH
Q 047146 551 RKK 553 (608)
Q Consensus 551 ~~~ 553 (608)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.054 Score=56.99 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCC
Q 047146 496 VWGALLGACKIHAKVE---LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTP 563 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 563 (608)
+.+.|+..+.+.++.. +|+.+++......|.+...-..++.+|.-.|-+..|.++++.+.-++|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 4456667777777644 6677777777788888877788888888888888888888888766666543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.8e-05 Score=54.85 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-ChHHHHHHHHHHHhC
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN-RWKEALKLRKKMKER 557 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 557 (608)
++.+|..+...+...|++++|+..++++++.+|+++.+|..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788889999999999999999999999999999999999999999999 799999999988753
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.035 Score=53.35 Aligned_cols=120 Identities=17% Similarity=0.120 Sum_probs=84.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 443 (608)
+.-+.-+...|+...|.++-.+..-|+-.-|-..+.+++..+++++-..+... +-++..|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 44455566778888888888888888888888888999998888877765432 223477888888888888888
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047146 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGA 503 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 503 (608)
+|..+..++. +..-+..|.++|++.+|.+.--+.+ |...+..+...
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~ 300 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKR 300 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 8887776631 1345778888888888877654442 44444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0013 Score=55.50 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC--hhHHHH
Q 047146 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE----VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ--TEHYGC 467 (608)
Q Consensus 394 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 467 (608)
|..++..+ ..++...+...++.+... .|+. .....+...+...|++++|...|+.+... ...|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33444444 367777777777777775 3322 23333445677778888888888887773 22222 123445
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047146 468 MVDLFGRAGLIREALDLIKSMPL-VPDAFVWGALLGACKIHAKVELAEIVMENL 520 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 520 (608)
|...+...|++++|+..++.... ...+..+......+...|++++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777788888888888877622 224455666667788888888888888765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0005 Score=55.87 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALL 501 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 501 (608)
++..+...+...|++++|.+.|..+.+...-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666666666666666655211111 1234555666777777777777777665 22232 34566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
.++...|+.++|...++++.+..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 777778888888888888888888776443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.9e-05 Score=53.23 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=48.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+...+...|++++|...++++++..|+++..+..++.++.+.|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567788888888888888888888888888888888888888888888888887544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00026 Score=64.47 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=82.6
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKV 510 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 510 (608)
+-..+.+++.+|+..|..++. +.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 457788999999999999987 555 6777778899999999999999988877 66774 55899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHH
Q 047146 511 ELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 511 ~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
++|++.|+++++++|++......|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999999999999998444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.3e-05 Score=44.81 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=24.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 047146 188 VSWTTLIQAYVKMDYPTEAILSFFDMCQANL 218 (608)
Q Consensus 188 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 218 (608)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00055 Score=59.87 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 537 (608)
..+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666666666666655 22222 34566666777777777777777777777777777777777777
Q ss_pred HHhCCC--------------hHHHHHHHHHHHhC
Q 047146 538 YSSKNR--------------WKEALKLRKKMKER 557 (608)
Q Consensus 538 ~~~~g~--------------~~~A~~~~~~m~~~ 557 (608)
|...|+ +++|.+++++..+.
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 777665 45566666665543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00077 Score=61.82 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=85.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047146 459 QPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKI---HAKVELAEIVMENLVRFEPEGDGAYIL 533 (608)
Q Consensus 459 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 533 (608)
+-|...|-.|...|...|+.+.|...|.+. .+.| ++..+..+..++.. .....++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 337889999999999999999999998887 4444 55666666655433 234578899999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCccCC
Q 047146 534 MTNIYSSKNRWKEALKLRKKMKERKVKKTP 563 (608)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 563 (608)
|+..+...|++.+|...|+.|.+.....+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987665544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0027 Score=65.34 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=73.8
Q ss_pred CCChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------ccHHHHHHHHHHhH
Q 047146 388 CRDVYSYTAMIVGLAI--HG---KAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHA--------GLVEEGCKHFLDMS 453 (608)
Q Consensus 388 ~~~~~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 453 (608)
..|...|...+.+... .+ ....|..+|++..+ ..|+.. .+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3566777777776443 22 25678888888888 577653 444333322111 11223333333222
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 454 RVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 454 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 21012223344555544445556666666666655 4455555566666666666666666666666666666655
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.2e-05 Score=44.10 Aligned_cols=31 Identities=35% Similarity=0.642 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 422 (608)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.059 Score=51.22 Aligned_cols=243 Identities=20% Similarity=0.192 Sum_probs=148.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCChH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047146 303 RGQFKEALDIFRRMQGLGLKPDDF--TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF 380 (608)
Q Consensus 303 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 380 (608)
.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|.++-+..-..- +.-.-...+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 45555666656555431 2111 12222222334555555555544443322 112334456666777777777777
Q ss_pred HHHhhcC-----CCChh--HHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHH
Q 047146 381 GVFRSMK-----CRDVY--SYTAMIVGLA---IHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 381 ~~~~~~~-----~~~~~--~~~~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
++++.-. ++++. .--.|+.+-. -.-+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 7776443 23332 1122222211 12345566666555555 678765 4444566799999999999999
Q ss_pred HHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 450 LDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM----PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 450 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+.+- ...|.+..+...+ +.+.|+. ++.-+++. ..+| +..+..++..+....|++..|..-.+.+....
T Consensus 287 E~aW---K~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAW---KAEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHH---hcCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 9884 4577776654433 3455543 22222222 3455 55677778888899999999999999999988
Q ss_pred CCCCchHHHHHHHHHhC-CChHHHHHHHHHHHhCCC
Q 047146 525 PEGDGAYILMTNIYSSK-NRWKEALKLRKKMKERKV 559 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~ 559 (608)
|... .|..|+++-... |+-.++...+-+..+..-
T Consensus 360 pres-~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 360 PRES-AYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred chhh-HHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 8874 899999987755 999999999988776543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0021 Score=61.02 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA-CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888889999999988542 3344555555444 33356777799999999884 5567788889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 471 LFGRAGLIREALDLIKSM-PLVPDA----FVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.+.+.++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 333333 4899999999999999999999999998888754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0019 Score=56.48 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD--EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYG 466 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 466 (608)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566666677777788888887777776432322 24566666777777777777777777765 233 345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
.+..+|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666666655544322221 112677888888888888887 5555555554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00067 Score=66.83 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=87.2
Q ss_pred CCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhC--cCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchH
Q 047146 113 LLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA--LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSW 190 (608)
Q Consensus 113 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 190 (608)
.+.+...+..++..+....+++.+..++-...... ...-..+..++|+.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455566667777777777777777776665542 2223445568888888888888888888776667777888888
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc
Q 047146 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235 (608)
Q Consensus 191 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 235 (608)
|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888776666666667766666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.002 Score=53.77 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
-....-+...|++++|..+|+-+ -..| +...|..|...|...++++.|...+..+..+.++++.++...+..|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34455566889999999999887 2233 677788888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 047146 544 WKEALKLRKKMKE 556 (608)
Q Consensus 544 ~~~A~~~~~~m~~ 556 (608)
.+.|+..|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=65.40 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=84.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 474 (608)
....+...|++++|+..|++..+. .| +...|..+..++...|++++|+..++.+.. +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 355677889999999999999984 55 456888888899999999999999999987 345 57788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047146 475 AGLIREALDLIKSM-PLVPDAFVWGALLGAC 504 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 504 (608)
.|++++|+..|++. .+.|+.......+..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999998 6667655555554333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00075 Score=58.77 Aligned_cols=94 Identities=14% Similarity=-0.092 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
....|..++..+...|++++|+..|++. .+.|+ ..+|..+...+...|++++|...++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455667777777888888888888877 33332 347788888899999999999999999999998888888888
Q ss_pred HHHH-------hCCChHHHHHHHHHH
Q 047146 536 NIYS-------SKNRWKEALKLRKKM 554 (608)
Q Consensus 536 ~~~~-------~~g~~~~A~~~~~~m 554 (608)
.+|. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888666655544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0008 Score=61.34 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=84.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcC
Q 047146 399 VGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAG 476 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 476 (608)
.-+.+.++|.+|+..|.+.++ +.| |.+-|..=..+|++.|.++.|++-.+..+. +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 346788999999999999999 566 556777778899999999999888887765 5664 688999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047146 477 LIREALDLIKSM-PLVPDAFVWGALLGAC 504 (608)
Q Consensus 477 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 504 (608)
++++|++.|++. .+.|+-.+|..=+...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999998 8899877776655443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=50.58 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 047146 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472 (608)
Q Consensus 394 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 472 (608)
|..+...+...|++++|...+++..+. .|+ ...+..+...+...+++++|.+.+...... .+.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 344445555555666666665555543 222 234444444555555555555555554431 111223344444444
Q ss_pred HhcCCHHHHHHHHHh
Q 047146 473 GRAGLIREALDLIKS 487 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~ 487 (608)
...|++++|...++.
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 444444444444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.016 Score=49.03 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=100.0
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 047146 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP---DAFVW 497 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 497 (608)
..|+...-..+..+..+.|+..+|...|..... --+..|....-.+.++....+++..|...++.+ ...| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 467777677788888888999999998888877 234457777788888888888998888888877 2222 23344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+.+.+...|.+..|+..|+.+....|+.. .....+..+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566788889999999999999988887753 666677778889988887766665544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00034 Score=49.61 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=48.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456777888888888888888 5556 556778888888899999999999999999888864
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00038 Score=50.76 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=51.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
..+.+.++++.|.+.++++++.+|+++..+...+.+|.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5678889999999999999999999999999999999999999999999999886554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.19 Score=53.09 Aligned_cols=184 Identities=11% Similarity=0.045 Sum_probs=101.4
Q ss_pred HccCCchHHHh------hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHH
Q 047146 66 SLSRGNEIENL------SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQ 138 (608)
Q Consensus 66 ~~~g~~~~A~~------~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 138 (608)
.+.|+.++|.. ..+..|..+...+-.+|...+..++ ..+|++.... -|+..-...++.++.+.+++.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776 2333456677777777777888877 8888777653 4666677777777777776655544
Q ss_pred HHHHHHHhCcCCcHhHHHHHHHHHHhcCC----------HHHHHHHhcccCCCC-CCCCcchHHHHHHHHHhCCCchHHH
Q 047146 139 VHAYSMKTALLSNVYVFNTLMRLYAVCGL----------IKAVHKLFHFRQHPQ-AQRDLVSWTTLIQAYVKMDYPTEAI 207 (608)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~ 207 (608)
+--++-+ .++-+++.+-++++.+...-. +.-|.+.++.+.+.. .--+..-...-...+-..|.+++|+
T Consensus 132 aa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 132 AALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 4444444 233445555555555544321 123444444433322 1111111112223344566777777
Q ss_pred HHHHH-HHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHcc
Q 047146 208 LSFFD-MCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNH 252 (608)
Q Consensus 208 ~~~~~-m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 252 (608)
+++.. .-+.-..-+...-+--+..+...+++.+..++-.++...+
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 77733 2222222233333445556666777777777777777664
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.11 Score=49.98 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 506 (608)
.+.+..+.-|...|....|.++-++. .+ |+...|...+.+|+..++|++-.++... +..+.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35566677778889988887765544 44 8888999999999999999988887654 3356788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888873 3467788899999999998775544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.13 Score=52.68 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=116.4
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC-CCC--------CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 047146 150 SNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP-QAQ--------RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRP 220 (608)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 220 (608)
|.+..|..|.....+.-.++-|+..|-+.... |++ .+...-.+=|.+| -|++++|.++|-+|-++.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh--
Confidence 66677777777666666777777776554321 110 0000011112222 3677777777777644332
Q ss_pred CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCC--CCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHH
Q 047146 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL--SPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIA 298 (608)
Q Consensus 221 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 298 (608)
.+....+.|++-...++++.- |-+. .--...++.+...+.....+++|.+.|..-.. -...+.
T Consensus 766 -------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~e 830 (1189)
T KOG2041|consen 766 -------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIE 830 (1189)
T ss_pred -------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHH
Confidence 233444555555444443321 1111 00123455566666666666666665544321 112334
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047146 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378 (608)
Q Consensus 299 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (608)
++.+..++++-..+... ++-+....-.+..++.+.|.-++|.+.+-.. +.+ .+.++.+...+++.+
T Consensus 831 cly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHHHHH
Confidence 44444444443333332 2334445555666666777766666554322 111 244556666677777
Q ss_pred HHHHHhhcCCCChhHHHH--------------HHHHHHHcCChHHHHHHHHHHH
Q 047146 379 AFGVFRSMKCRDVYSYTA--------------MIVGLAIHGKAWKALDIFSEMS 418 (608)
Q Consensus 379 A~~~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~A~~~~~~m~ 418 (608)
|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.
T Consensus 897 avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 897 AVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 777776665554443322 1223444555555566666654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00051 Score=51.72 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=43.1
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIE-PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 481 (608)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46667777777776664221 1233444456666667777777666665 21 122 223333446666666666666
Q ss_pred HHHHHh
Q 047146 482 LDLIKS 487 (608)
Q Consensus 482 ~~~~~~ 487 (608)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.052 Score=51.76 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSMP---L-----VPDAF-VWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
++..++..+.+.|++++|.++|++.. . +.+.. .+...+-.+...||...|...+++.....|.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34445555566666666666665540 0 11111 1222223444556666666666666666554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.18 Score=49.15 Aligned_cols=414 Identities=11% Similarity=0.058 Sum_probs=200.6
Q ss_pred ccCCcHHHHHHHHHHHHhCcCCc------HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHH--HhC
Q 047146 129 QSQSLRVGQQVHAYSMKTALLSN------VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAY--VKM 200 (608)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~ 200 (608)
+.+++.++..+|..+.+..- .+ ....+.++++|-. .+++.....+....+.. | ...|-.+..++ -+.
T Consensus 18 kq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHh
Confidence 34566666666666654321 11 2233455555553 33444433333322211 1 22344443332 355
Q ss_pred CCchHHHHHHHHHHHC--CCCC------------CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCC--CCCchHHHHH
Q 047146 201 DYPTEAILSFFDMCQA--NLRP------------DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFN--LSPDVFIHNA 264 (608)
Q Consensus 201 g~~~~a~~~~~~m~~~--~~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~p~~~~~~~ 264 (608)
+.+.+|++.+...... +-+| |-.-=+..+..+...|.+.+|+.+++.+...-+. ..=+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 6666666666555433 2211 1111123445566677777777777666654222 1115666666
Q ss_pred HHHHHHhcCChHH---------------HHHHHccCCCCCh----------hhHHHHHHHHHhc--CChhHHHHHHHHHH
Q 047146 265 LIDMYLKCGNIPS---------------ARKVFDEMPVKNV----------VSWNSMIAGLTHR--GQFKEALDIFRRMQ 317 (608)
Q Consensus 265 li~~~~~~g~~~~---------------A~~~~~~~~~~~~----------~~~~~li~~~~~~--g~~~~A~~~~~~m~ 317 (608)
++-++++.--++- +.-+.++|...+. .....++....-. .+..--.++++...
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 6655554321111 1111111111111 1111111111111 11122233333333
Q ss_pred hCCCCCChHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCC----chhHHHHHHHHhHhcCCHHHHHHHHhhcC--CCC
Q 047146 318 GLGLKPDDFT-LVCVLNSCANIGWLELGKWVHTYLDKNHINT----DGFIGNALVDMYAKCGRIDQAFGVFRSMK--CRD 390 (608)
Q Consensus 318 ~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~ 390 (608)
..-+.|+... ...+...+.. +.+.+..+.+.+....+.+ -...+..++....+.++...|...+.-+. +|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 3344555432 2223333322 4455555544443332111 13345666666777788888877776554 333
Q ss_pred hhH-------HHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHHhcccc-HHHHHHHHHHhHh
Q 047146 391 VYS-------YTAMIVGLA----IHGKAWKALDIFSEMSQVGIEPDEV-TFVGVL---SACSHAGL-VEEGCKHFLDMSR 454 (608)
Q Consensus 391 ~~~-------~~~li~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll---~~~~~~g~-~~~a~~~~~~~~~ 454 (608)
... -..+-+..+ ..-+...=+.+|+...... .|.. ....++ .-+.+.|. -++|.++++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 221 111112222 1122334455666665543 3332 112222 23555565 7788888888876
Q ss_pred hcCCCC-ChhHHHHHHH----HHHhc---CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHH
Q 047146 455 VYNLQP-QTEHYGCMVD----LFGRA---GLIR---EALDLIKSMPLVP----DAFVWGALLGA--CKIHAKVELAEIVM 517 (608)
Q Consensus 455 ~~~~~p-~~~~~~~l~~----~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~~~~~~a~~~~ 517 (608)
+.| |..+-|.... .|..+ ..+. +-..++++.++.| +...-+.|..| ...+|++.++.-.-
T Consensus 409 ---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 409 ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred ---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333 4433333221 22211 1122 2233444556665 33455555544 56899999998888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 518 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.-+.+..| ++.+|..++-++....++++|..++..++
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 88888899 77899999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.011 Score=56.51 Aligned_cols=263 Identities=14% Similarity=0.065 Sum_probs=120.1
Q ss_pred HHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHHHHhccCCh
Q 047146 266 IDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-DFTLVCVLNSCANIGWL 341 (608)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~ 341 (608)
-+.+.+..++..|+..+.... ..+..-|..-...+..-|++++|.--.+.-.+. +|. ..+..-.-+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 344555666666666665433 334455666666666666666666555444332 222 12333333334444444
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC-----CCChhHHHHH-HHHHHHcCChHHHHHHHH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-----CRDVYSYTAM-IVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l-i~~~~~~~~~~~A~~~~~ 415 (608)
..|.+.++.-. .+ ....|...++.+. +|...+|..+ ...+...|++++|...--
T Consensus 134 i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444433110 00 0111111111111 0112223222 123444555555555544
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhH-------------HHHHHHHHHhcCCHHHH
Q 047146 416 EMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH-------------YGCMVDLFGRAGLIREA 481 (608)
Q Consensus 416 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~l~~~~~~~g~~~~A 481 (608)
...+. .++ ......-..++...++.+.+...|.+..+ +.|+... +..=..-..+.|.+.+|
T Consensus 194 ~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 194 DILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 44432 221 11221112233344555555555555533 3333211 11112233455666666
Q ss_pred HHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 482 LDLIKSM-PLVP-----DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 482 ~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.+.+.+. ++.| +...|.....+..+.|+.++|+.--+.+.+++|.-...|..-+.++...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555 3333 333344444445566666666666666666666666666666666666666666666665554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0025 Score=62.91 Aligned_cols=123 Identities=9% Similarity=0.021 Sum_probs=96.6
Q ss_pred cCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC--CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHH
Q 047146 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP--QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMIL 225 (608)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 225 (608)
...+......+++......+++.+..++...... ...--..|..++|+.|.+.|..+++++++..=..-|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455667777888888888888888887765543 11122345679999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhc
Q 047146 226 VIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272 (608)
Q Consensus 226 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 272 (608)
+.+|..+.+.|++..|.++...|...+.-. +..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~--~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFD--NPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccC--CchHHHHHHHHHHHh
Confidence 999999999999999999998888765433 555655555556655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0034 Score=59.60 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR-AGLIREALDLIKSM--PLVPDAFVWGALLGA 503 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 503 (608)
.+|..++..+.+.+..+.|.++|.++.+. -..+..+|-..+.+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999863 22234555555555344 56677799999998 444578889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+...++.+.|+.+|++++..-|... ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998866654 58999999999999999999999988754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.014 Score=60.22 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHh
Q 047146 422 IEPDEVTFVGVLSACSHA-----GLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRA--------GLIREALDLIKS 487 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 487 (608)
.+.|...|..++.+.... ++.+.|..+|+++.+ ..|+ ...|..+..++... ++...+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 456778898888875432 347789999999987 5675 44555544444322 123444555544
Q ss_pred C---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 488 M---P-LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 488 ~---~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
. + ...++..+.++.-.+...|++++|...++++.+++|+ ...|..++.+|...|+.++|...+++....+..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3 1 2335677887777777789999999999999999995 679999999999999999999999998765543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00038 Score=49.92 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWG 498 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 498 (608)
..|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456666666666666552 2224555555666666666666666666666 3445543333
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0054 Score=47.27 Aligned_cols=80 Identities=15% Similarity=0.035 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCchhHH
Q 047146 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGL-KPDDFTLVCVLNSCANIG--------WLELGKWVHTYLDKNHINTDGFIG 363 (608)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 363 (608)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+.....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677777999999999999999999 999999999999887654 234556778888899999999999
Q ss_pred HHHHHHhHh
Q 047146 364 NALVDMYAK 372 (608)
Q Consensus 364 ~~li~~~~~ 372 (608)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0033 Score=58.50 Aligned_cols=88 Identities=15% Similarity=0.075 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHh
Q 047146 469 VDLFGRAGLIREALDLIKSM-PLVPDA----FVWGALLGACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSS 540 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 540 (608)
+..+.+.|++++|...|+.. ...|+. ..+--+..++...|++++|...|+.+.+..|+++ ..+..++.+|..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 33334445555555555554 222321 2333444555556666666666666665555533 334444555556
Q ss_pred CCChHHHHHHHHHHHh
Q 047146 541 KNRWKEALKLRKKMKE 556 (608)
Q Consensus 541 ~g~~~~A~~~~~~m~~ 556 (608)
.|++++|.++++++.+
T Consensus 230 ~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 230 KGDTAKAKAVYQQVIK 245 (263)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0085 Score=52.13 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD--EVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555556666666666666554321211 12455555555555666666655555544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.008 Score=46.37 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccc--------cHHHHHHHHHHhHhhcCCCCChhHH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGI-EPDEVTFVGVLSACSHAG--------LVEEGCKHFLDMSRVYNLQPQTEHY 465 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 465 (608)
...|..+...+++...-.+|+.+.+.|+ .|+..+|+.++.+..+.. ++-+...+|+.+.. .+++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 3456666667888888888999988888 888889998888766542 34556777888877 5788888888
Q ss_pred HHHHHHHHh
Q 047146 466 GCMVDLFGR 474 (608)
Q Consensus 466 ~~l~~~~~~ 474 (608)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888777654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.071 Score=49.28 Aligned_cols=170 Identities=14% Similarity=0.086 Sum_probs=101.3
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC--CCh-hH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC--RDV-YS---YTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSH 438 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 438 (608)
...+...|++++|.+.|+.+.. |+. .. .-.++.++.+.+++++|...+++..+. .|+. ..+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3444566788888888877763 222 11 223456677788888888888888774 3432 233333333321
Q ss_pred --cc---------------c---HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 047146 439 --AG---------------L---VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWG 498 (608)
Q Consensus 439 --~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 498 (608)
.+ + ...|.+.|+.+++ -|=...-..+|...+..+...- ..--.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~l-a~~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRL-AKYEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHH-HHHHH
Confidence 11 1 2233344444444 2222223344444333331000 00111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.+..-|.+.|.+..|..-++.+++..|+.+ .+...++.+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345668899999999999999999988875 467788899999999999999887653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0011 Score=47.64 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHA-KVELAEIVMENLVRFEP 525 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 525 (608)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|.+.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777777777777777777776 4445 4557777777778887 68888888888888776
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0099 Score=47.66 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 047146 469 VDLFGRAGLIREALDLIKSM---PLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPE---GDGAYILMTNIYSS 540 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 540 (608)
..++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455556666666666554 22211 223444556666666666666666666666565 44444555566666
Q ss_pred CCChHHHHHHHHHH
Q 047146 541 KNRWKEALKLRKKM 554 (608)
Q Consensus 541 ~g~~~~A~~~~~~m 554 (608)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 67766666665443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.031 Score=46.63 Aligned_cols=86 Identities=8% Similarity=0.025 Sum_probs=39.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 474 (608)
+..-+.+.|++++|..+|+-+.. +.|.. .-|..|..+|...|++++|+..|..... +.| +...+-.+..++..
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHH
Confidence 33334445555555555555544 33322 2334444444445555555555555543 122 34444444555555
Q ss_pred cCCHHHHHHHHHh
Q 047146 475 AGLIREALDLIKS 487 (608)
Q Consensus 475 ~g~~~~A~~~~~~ 487 (608)
.|+.+.|.+-|+.
T Consensus 116 lG~~~~A~~aF~~ 128 (157)
T PRK15363 116 CDNVCYAIKALKA 128 (157)
T ss_pred cCCHHHHHHHHHH
Confidence 5555555544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.018 Score=54.93 Aligned_cols=154 Identities=20% Similarity=0.176 Sum_probs=96.7
Q ss_pred HhHhcCCHHHHHHHHhhcCCCChh-HHHHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------------
Q 047146 369 MYAKCGRIDQAFGVFRSMKCRDVY-SYTAMIVG--LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGV------------- 432 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l------------- 432 (608)
++.-.|+.++|...-..+.+-|.. .+...+.+ +-...+.+.|...|++... ..|+...-...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhh
Confidence 444556666666555544433222 22222322 3345666777777776665 34444322111
Q ss_pred HHHHhccccHHHHHHHHHHhHhh--cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH---HHHHH
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRV--YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALL---GACKI 506 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~~~~ 506 (608)
.+-..+.|.+..|.+.+.+.+.. .+..|+...|.....+..+.|+.++|+.-.++. .+ |+....+++ .++..
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHH
Confidence 22345779999999999988651 123345566777778888999999999988887 43 444333433 45677
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 047146 507 HAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~ 526 (608)
.+++++|.+-++++.+...+
T Consensus 334 le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 89999999999999988666
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.45 Score=49.46 Aligned_cols=338 Identities=14% Similarity=0.031 Sum_probs=168.6
Q ss_pred HCCCCCCceeHH-----HHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCH--HHHHHHhcc-cCCC
Q 047146 110 IKGLLPNTYTLP-----YVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI--KAVHKLFHF-RQHP 181 (608)
Q Consensus 110 ~~g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~-m~~~ 181 (608)
.-|+..+..-|. .+|.-+...+.+..|.++-..+...-... ..++......+.+..+. +++.+..++ +...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555444443 44556667778888888776654321111 46677777777766433 333333333 2221
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC----CCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCC
Q 047146 182 QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLR----PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSP 257 (608)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p 257 (608)
.-...+|..+.+-..+.|+++-|..+++.=...+-. .+..-+...+.-+...|+.+...+++-.+.+.-
T Consensus 504 --~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~----- 576 (829)
T KOG2280|consen 504 --LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL----- 576 (829)
T ss_pred --CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-----
Confidence 145667888888888899999998887653222211 122334455566666777776666665555431
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCC-CChhhHHHHHHHHHhcCChhHHHHHHH--HHH----hCCCCCChHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFKEALDIFR--RMQ----GLGLKPDDFTLVC 330 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~g~~p~~~t~~~ 330 (608)
+...+...+ .+...|..+|..... .|..+ +..+.+.++-.+++..|. ... ..|..|+ ...
T Consensus 577 ~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 577 NRSSLFMTL------RNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred HHHHHHHHH------HhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 111111111 123334444433321 11111 111122222222222221 100 0122233 223
Q ss_pred HHHHHhccCChHHHHH----------HHHHHH-HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 047146 331 VLNSCANIGWLELGKW----------VHTYLD-KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIV 399 (608)
Q Consensus 331 ll~~~~~~~~~~~a~~----------~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 399 (608)
.-.+|++........+ +...+. +.|......+.+--+.-+...|+..+|.++-.+..-||-..|---+.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~ 723 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLT 723 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHH
Confidence 3344444333221111 111111 12222222233334444555677777777777777777777777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHH
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 479 (608)
+++..+++++-+++-+.+. .+.-|.-++.+|.+.|+.++|.+++.+... .. -.+.+|.+.|++.
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVK 787 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---hH-------HHHHHHHHhccHH
Confidence 7777777766655544332 134555667777777777777766655422 11 3566677777777
Q ss_pred HHHHH
Q 047146 480 EALDL 484 (608)
Q Consensus 480 ~A~~~ 484 (608)
+|.++
T Consensus 788 eAad~ 792 (829)
T KOG2280|consen 788 EAADL 792 (829)
T ss_pred HHHHH
Confidence 66654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0058 Score=58.06 Aligned_cols=256 Identities=13% Similarity=0.021 Sum_probs=145.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChH----HHHHHHHHHhccCChHHHHHHHHHHH--H--cCCCC-chhHHHHHHHHh
Q 047146 300 LTHRGQFKEALDIFRRMQGLGLKPDDF----TLVCVLNSCANIGWLELGKWVHTYLD--K--NHINT-DGFIGNALVDMY 370 (608)
Q Consensus 300 ~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~~-~~~~~~~li~~~ 370 (608)
+++.|+....+.+|+..++.| .-|.. .|..+-.+|.-.+++++|.+++..=+ . .|-.. .......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 567777777777777777766 33333 34444455566667777776654311 0 11000 011112233333
Q ss_pred HhcCCHHHHHHHHhhcC-------CC--ChhHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH---
Q 047146 371 AKCGRIDQAFGVFRSMK-------CR--DVYSYTAMIVGLAIHGK--------------------AWKALDIFSEMS--- 418 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m~--- 418 (608)
--.|.+++|.-.-.+-. .+ ....+-.+...|...|+ .+.|.++|.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555543322211 00 11223333444433321 233444544322
Q ss_pred -HCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHh---hcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 047146 419 -QVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSR---VYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM---- 488 (608)
Q Consensus 419 -~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 488 (608)
+.|-.. ....|..+.+.|.-.|+++.|+..++.-.. .+|-.. ....+..+..++.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 112111 123566677777778899999876664322 233332 3456778888889999999998888754
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 489 ---PL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRF----E--PEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 489 ---~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+. .....+.-+|...|.-..+++.|+.++.+=+.+ + .....+|.+|+++|...|..++|+.+.+.-++
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 224556667788888888899998887765543 2 22335788999999999999999888776653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.044 Score=55.31 Aligned_cols=193 Identities=18% Similarity=0.173 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 307 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|..- |.+ |..+++|.....++.|.+++..-
T Consensus 617 L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcC
Confidence 3445556777788877776543 34456667777777766532 211 34455566555666666555432
Q ss_pred CC--------------CChhHHHHHHHHHHHcCChHHHHHHHHH------HHHCCCC---CCHHHHHHHHHHHhccccHH
Q 047146 387 KC--------------RDVYSYTAMIVGLAIHGKAWKALDIFSE------MSQVGIE---PDEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 387 ~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~~------m~~~g~~---p~~~~~~~ll~~~~~~g~~~ 443 (608)
.. .++.-=.+....+...|+.++|..+.-+ +.+-+-+ .+..+...+...+.+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 21 0111112233344556666666554211 1111112 23345555555566667777
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-----------HHHHHHHHHHcCCHH
Q 047146 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFV-----------WGALLGACKIHAKVE 511 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-----------~~~l~~~~~~~~~~~ 511 (608)
.|.++|.++-. ...++++....+++.+|..+-++. ...||... |.-.-.++.+.|+..
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~ 834 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQR 834 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchH
Confidence 78888877744 245678888888999998888887 34444321 112224556666666
Q ss_pred HHHHHHHHHH
Q 047146 512 LAEIVMENLV 521 (608)
Q Consensus 512 ~a~~~~~~~~ 521 (608)
+|.++++++.
T Consensus 835 EA~~vLeQLt 844 (1081)
T KOG1538|consen 835 EAVQVLEQLT 844 (1081)
T ss_pred HHHHHHHHhh
Confidence 6666666554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.15 Score=49.45 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=94.8
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKCR-------DVYSYTAMIVGLAI---HGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
.++-.|....+++.-.++++.+... ....--...-++-+ .|+.++|+.++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566777777777777776642 11111122334445 6788888888888665556677777777766
Q ss_pred HHhc---------cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC-HH---HHHHHH---HhC-------CCC
Q 047146 435 ACSH---------AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL-IR---EALDLI---KSM-------PLV 491 (608)
Q Consensus 435 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~-------~~~ 491 (608)
.|-. ....++|+..|.+.-+ +.|+...--.++-.+.-.|. .+ +..++- ... .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5422 2247778877776643 45553322222222333332 11 222222 111 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
.|--.+.+++.++.-.|+++.|.+..+++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 355566788899999999999999999999987664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.12 Score=43.88 Aligned_cols=97 Identities=14% Similarity=-0.011 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CChhHHHHH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAM 397 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 397 (608)
|+...-..+..+....|+..+|...+++...--+..|..+...+.++....+++..|...++.+.+ ..+..--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444444444444444444444444444444433444444444444444444444444444444332 111222233
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~ 419 (608)
...|...|++.+|..-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00069 Score=40.37 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhCCChHHHHH
Q 047146 517 MENLVRFEPEGDGAYILMTNIYSSKNRWKEALK 549 (608)
Q Consensus 517 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 549 (608)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.11 Score=46.79 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCC----------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHH
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMPV----------KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 331 (608)
+++|.+.+.-..-+++-...++.-.. +-....+.++..+.-.|.+.-....+.+.++..-+.+....+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555544444444444443221 11234466777777788888888899998887656677778888
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCch-----hHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHH
Q 047146 332 LNSCANIGWLELGKWVHTYLDKNHINTDG-----FIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAI 403 (608)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 403 (608)
.+.-.+.|+.+.+...++...+..-..+. .+.......|.-.+++..|...|.+++. .|+..-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999877664333333 3333344456677888888888888774 345555555555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDEVTFV 430 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~~~~~ 430 (608)
.|+..+|++.++.|.+. .|...+-+
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 78888999999998884 55554444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.05 Score=48.79 Aligned_cols=132 Identities=15% Similarity=0.039 Sum_probs=61.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCC----CCChhHHHHHHHH
Q 047146 396 AMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL----QPQTEHYGCMVDL 471 (608)
Q Consensus 396 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~ 471 (608)
.++..+.-.|.+.-.+.++.+.++...+-+......+.+.-.+.||.+.|...|++..+..+. +-...+.......
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 344444445555556666666666443444555555666666666666666666655442111 1111122222233
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 472 FGRAGLIREALDLIKSMPL--VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
|.-+.++.+|...+.++.. ..|+...|.-.-...-.|+..+|.+.++.+.+..|..
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3444455555555555411 1133333322222233455555555555555555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.061 Score=54.37 Aligned_cols=192 Identities=15% Similarity=0.220 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHcc
Q 047146 205 EAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284 (608)
Q Consensus 205 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (608)
+.+.-+++|.+.|-.|+.... ...|+-.|++.+|-++|.+. |.. +..+.+|.....++.|.+++..
T Consensus 618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e--------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE--------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch--------hhHHHHHHHHHHHHHHHHHhhc
Confidence 333445666667766766543 33455667777777766432 211 2334445555555555555433
Q ss_pred CCC--------------CChhhHHHHHHHHHhcCChhHHHHHHHH------HHhCCC---CCChHHHHHHHHHHhccCCh
Q 047146 285 MPV--------------KNVVSWNSMIAGLTHRGQFKEALDIFRR------MQGLGL---KPDDFTLVCVLNSCANIGWL 341 (608)
Q Consensus 285 ~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~---~p~~~t~~~ll~~~~~~~~~ 341 (608)
-.. .|+.--.+-...+...|+.++|+.+.-+ +.+-+- ..+..+...+..-+.+...+
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 220 0110011222334455666666554321 111111 22334444444445566677
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChh-----------HHHHHHHHHHHcCChH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVY-----------SYTAMIVGLAIHGKAW 408 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~~~~li~~~~~~~~~~ 408 (608)
..|.++|..+-.. ..++++....+++.+|..+-++.++ +|+. -|...-++|.+.|+..
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~ 834 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQR 834 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchH
Confidence 7777777766443 4577778888888888888887775 2321 1222334555556666
Q ss_pred HHHHHHHHHHH
Q 047146 409 KALDIFSEMSQ 419 (608)
Q Consensus 409 ~A~~~~~~m~~ 419 (608)
+|..+++++..
T Consensus 835 EA~~vLeQLtn 845 (1081)
T KOG1538|consen 835 EAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHhhh
Confidence 66666655543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.013 Score=51.35 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=64.3
Q ss_pred HHHHhhc--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 047146 380 FGVFRSM--KCRDVYSYTAMIVGLAIH-----GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA------------- 439 (608)
Q Consensus 380 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 439 (608)
...|+.. ..++-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 356777777777777643 56666777788888888888888888888876542
Q ss_pred ---ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC
Q 047146 440 ---GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476 (608)
Q Consensus 440 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 476 (608)
.+.+-|+++++.|.. +|+-||.+++..+++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence 233446666666666 566666666666666665544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0039 Score=45.32 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 469 VDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
-..|.+.+++++|.++++.+ ...| +...|......+...|++++|.+.++.+.+..|+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 35677888889998888888 5555 556777777888899999999999999999999876443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.048 Score=52.01 Aligned_cols=118 Identities=10% Similarity=0.058 Sum_probs=73.8
Q ss_pred cHHHHHHHHHHhHhhcC--CCCC--hhHHHHHHHHHHhc-CCHHHHHHHHHhC------CCCC--CHHHHHHHHHHHHHc
Q 047146 441 LVEEGCKHFLDMSRVYN--LQPQ--TEHYGCMVDLFGRA-GLIREALDLIKSM------PLVP--DAFVWGALLGACKIH 507 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~------~~~p--~~~~~~~l~~~~~~~ 507 (608)
++++|.+.+......+. -.|+ ...+..+...|... |++++|++.|++. .-.+ -..++..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 55555555555544111 0111 23445566677777 8888888888776 1122 123556667889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-------chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 508 AKVELAEIVMENLVRFEPEGD-------GAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
|++++|..+++++.....+++ ..+...+-++...|+...|.+.+++.....
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999987543222 234556667888999999999999987654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.35 Score=44.73 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=12.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGL 319 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~ 319 (608)
...+...|++++|++.|+++...
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~ 61 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR 61 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 33444555566666666555553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.025 Score=45.38 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=51.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQANLRPD--GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 271 (608)
..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++......++..-+..+...+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445566777777777777777665443 23455666667777777777777777766532210012222223334555
Q ss_pred cCChHHHHHHHcc
Q 047146 272 CGNIPSARKVFDE 284 (608)
Q Consensus 272 ~g~~~~A~~~~~~ 284 (608)
.|+.++|++.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666655533
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0068 Score=59.38 Aligned_cols=65 Identities=17% Similarity=0.015 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA---YILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+...|..+..+|...|++++|...++++++++|++... |..++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44566666666666666666666666666666666533 666666666666666666666666553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.037 Score=51.63 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP----DAFVWGALL 501 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~ 501 (608)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444455677777777777766321111 1245556677777777777777777766 2223 233444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 667788888888888888888888875
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.014 Score=51.09 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=59.6
Q ss_pred CCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC----------------ChHHHH
Q 047146 287 VKNVVSWNSMIAGLTH-----RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG----------------WLELGK 345 (608)
Q Consensus 287 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~ 345 (608)
.++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||..+-+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 3566666677777777777777777777777655422 345677
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047146 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGR 375 (608)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (608)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 777788888888888877777777765443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.084 Score=48.80 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=81.1
Q ss_pred CC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CHHH
Q 047146 423 EP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG---LIREALDLIKSM-PLVP-DAFV 496 (608)
Q Consensus 423 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~ 496 (608)
.| |...|..|..+|...|+.+.|...|....+- -.++...+..+..++.... ...++..+|+++ ...| |..+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 44 5669999999999999999999999998773 2335666666766665433 456788899988 5566 5566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
...|...+...|++.+|...++.+++..|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 66677889999999999999999999988876
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.003 Score=40.41 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
.+|..+..++...|++++|++.++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778889999999999999999999999999988877764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.05 Score=52.26 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+..+...+.+.+++..|++..+++++++|+|......-+.+|...|+++.|+..|+++.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555555555555555555555555554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.26 Score=39.39 Aligned_cols=141 Identities=12% Similarity=0.155 Sum_probs=88.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (608)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 34567778888888777653 24445666665555555555566666665442222 23445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 481 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
...-+-.++ .+.......+......|+-+.-..++..+.+.+..+|+....++.+|.+.|+..++.+++++.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555444442 355666777888899999999999999988777778889999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.19 Score=45.12 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=71.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIE-P-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
....+.+.|++++|...|+++...-.. | -......++.++.+.|+++.|...++...+.+.-.|... +...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 344455666677777777766654111 1 112444555566666667776666666666443333221 1111111111
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-----------------hHHHHHHH
Q 047146 475 AGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-----------------AYILMTNI 537 (608)
Q Consensus 475 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 537 (608)
........ ......+...+|...++.+++..|+++. .-..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0012223345666667777777777652 33457888
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 047146 538 YSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 538 ~~~~g~~~~A~~~~~~m~~~ 557 (608)
|.+.|.+.-|..-++.+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999853
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.3 Score=46.24 Aligned_cols=326 Identities=13% Similarity=0.081 Sum_probs=180.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHc-cCCCCCchHHHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDN-HFNLSPDVFIHNALIDMYL 270 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~p~~~~~~~li~~~~ 270 (608)
.+|.-++..+.+..|+++-..+...-..- ...|.....-+.+..+.. -..+++.+.+. +.... +...|..+..-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLT-PGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCC-CceeHHHHHHHHH
Confidence 45677777888888888777764322222 445555555555443221 12222222221 11112 4456677777777
Q ss_pred hcCChHHHHHHHccCCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChH
Q 047146 271 KCGNIPSARKVFDEMPVK--------NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 342 (608)
.+|+.+-|..+++.=+.. +..-+..-+.-....|+.+-...++-.+... .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 788888888887654421 1222344455566667766666666555442 1111121111 2233
Q ss_pred HHHHHHHHHHH-cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhh-c------CCCChhHHHHHHHHHHHcCCh---HH--
Q 047146 343 LGKWVHTYLDK-NHINTDGFIGNALVDMYAKCGRIDQAFGVFRS-M------KCRDVYSYTAMIVGLAIHGKA---WK-- 409 (608)
Q Consensus 343 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~------~~~~~~~~~~li~~~~~~~~~---~~-- 409 (608)
.|..++.++.+ .+. ..|-+.|-...+. .+...|.. - ..+-.........++.+.... ++
T Consensus 590 ~a~~lY~~~~r~~~~-------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDR-------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhHHHHHHHHhhch-------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 44444444433 221 1122222222222 22222111 0 011222233333444443331 11
Q ss_pred -----HHHHHHHHHH-CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047146 410 -----ALDIFSEMSQ-VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALD 483 (608)
Q Consensus 410 -----A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 483 (608)
-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-++.. -||...|-.-+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 2223333332 2333444566666777888899999988777664 3888888888999999999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 484 LIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 484 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
+-+... .+.-|.-...+|.+.|+.++|..++-+.- -+...+.+|.+.|++.+|.++--+
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~--------~l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVG--------GLQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccC--------ChHHHHHHHHHhccHHHHHHHHHH
Confidence 887763 24556667889999999999988876652 222678889999999998876544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.24 Score=44.54 Aligned_cols=163 Identities=11% Similarity=0.061 Sum_probs=95.1
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC--RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSH 438 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 438 (608)
...+...|++++|.+.|+.+.. |+ ....-.++.++.+.|++++|...+++..+. -|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3445566788888888877753 21 234556677788888888888888888774 4433 223322332221
Q ss_pred -------------cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047146 439 -------------AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACK 505 (608)
Q Consensus 439 -------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 505 (608)
.+...+|...|+.+++ -|=......+|...+..+... -...-..+...|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~-la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNR-LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1222344444444444 444444555555544444100 0011122456788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhCCChHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDG---AYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 548 (608)
+.|.+..|..-++.+++..|+.+. ....++..|.+.|..+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999999998764 5678888999999988554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.3 Score=45.88 Aligned_cols=254 Identities=13% Similarity=0.076 Sum_probs=142.8
Q ss_pred chHHHh-hCCCCCcchHHHHHH-------------HHHcCCCccHHHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHH
Q 047146 71 NEIENL-SLQNPQVYLYNFIIQ-------------CLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVG 136 (608)
Q Consensus 71 ~~~A~~-~~~~~~~~~~~~li~-------------~~~~~~~~~~~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 136 (608)
+++|.+ .-..|....|..+.. +|++.+++..+++..++..-- +...-..=+ -+-.|.+++|
T Consensus 679 ledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~---s~~~q~aei--~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH---SKEQQRAEI--SAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh---hHHHHhHhH--hhhhcchhHh
Confidence 466665 334455666766554 344555555444444443210 111111111 1234778888
Q ss_pred HHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCC-----CcchHHHHHHHHHhCCCchHHHHHHH
Q 047146 137 QQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQR-----DLVSWTTLIQAYVKMDYPTEAILSFF 211 (608)
Q Consensus 137 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~ 211 (608)
++++-.+-++. .-|.++.+.|++-...++++. |... -..+|+.+...++....|++|.+.|.
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876665533 345677788888888888766 3321 13457888888887778888888776
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChh
Q 047146 212 DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVV 291 (608)
Q Consensus 212 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 291 (608)
.-... ...+.++.+...+++-+.+-..+ +. +....-.+.+++.+.|.-++|.+.|-+-..|.
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe--~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-- 882 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLARTL-----PE--DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-- 882 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHHhc-----Cc--ccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence 64221 12344555544444443333222 22 56677778888888888888888776655443
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 371 (608)
+-+..|...++|.+|.++-+... -|...|. +.- .+.+++... + + .--|..+.
T Consensus 883 ---aAv~tCv~LnQW~~avelaq~~~----l~qv~tl---iak--------~aaqll~~~---~------~-~eaIe~~R 934 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQRFQ----LPQVQTL---IAK--------QAAQLLADA---N------H-MEAIEKDR 934 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcc----chhHHHH---HHH--------HHHHHHhhc---c------h-HHHHHHhh
Confidence 23456777888888888766543 2333332 211 111111110 0 0 12356677
Q ss_pred hcCCHHHHHHHHhhcCC
Q 047146 372 KCGRIDQAFGVFRSMKC 388 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~ 388 (608)
+.|+.-+|-+++.+|.+
T Consensus 935 ka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 935 KAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hcccchhHHHHHHHHhH
Confidence 77887777777777763
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.6 Score=48.10 Aligned_cols=112 Identities=14% Similarity=-0.004 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 472 (608)
.|.+...-+.+...+++|.-.|+..-+ ..-.+.++..+|++.+|..+...+.. +-.--..+-..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Confidence 333444444455566666555554322 12235566666777777666555432 1111112224566667
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047146 473 GRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 520 (608)
...++.-+|-++..+....|.. .+..+++...+++|.++....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 7777777777776666333322 233455666677776665544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.044 Score=52.34 Aligned_cols=153 Identities=10% Similarity=-0.001 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhh---cCC-CCChh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEM----SQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRV---YNL-QPQTE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m----~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~ 463 (608)
.|..+...|.-.|+++.|+..-+.= ++-|-+.. ...+..+.+++.-.|+++.|.+.|+....- .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4455555555667777776654332 22232222 236777777888888888888877765330 111 12334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC----Cc
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM--------PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF--EPEG----DG 529 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~----~~ 529 (608)
...+|...|.-..++++|+.++.+- ...-....+.+|..++...|..++|..+.++.++. ...+ ..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 4556777777777888888776653 12235567788888888888888888887776654 2222 22
Q ss_pred hHHHHHHHHHhCCChH
Q 047146 530 AYILMTNIYSSKNRWK 545 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~ 545 (608)
....+.+.-...|..+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 3445555555555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0067 Score=44.76 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRF----EPEG---DGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.+++.+...+...|++++|+..+++++++ +++. ..++..++.+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666667777777777777777777654 2221 2467788888888888888888887764
|
... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.26 E-value=3.9 Score=48.85 Aligned_cols=313 Identities=12% Similarity=0.048 Sum_probs=160.5
Q ss_pred HHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHcc-CCCCChhhHHHHHHHHHhcCChh
Q 047146 229 LSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE-MPVKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 229 l~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 307 (608)
..+-.+.+.+..|...++.-......-.-....+..+...|+.-+++|....+... ...++ ...-|......|++.
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHH
Confidence 33444556666666666653111000000233444555577777777777666652 33332 223344556678888
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchh-HHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 308 EALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGF-IGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 308 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
.|...|+.+.+.+ ++...+++.++......+.++...-..+...... .+... .++.=+.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 8888888887764 3335566666666666666666555444333222 12222 22222333356666666666555
Q ss_pred CCCChhHHHHH--HHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHH----------HHHh
Q 047146 387 KCRDVYSYTAM--IVGLAIHGKAW--KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKH----------FLDM 452 (608)
Q Consensus 387 ~~~~~~~~~~l--i~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~----------~~~~ 452 (608)
..+..+|.+. ...+.+..+-+ .-.+..+.+++.-+.| +.+|+..|.+..+.++ -...
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655 22333222222 1223333333321221 1122222221111111 1111
Q ss_pred HhhcCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 453 SRVYNLQPQT------EHYGCMVDLFGRAGLIREALDLIKSM----PLVP-----DAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 453 ~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
....+..++. ..|..-+..-....+..+-+--+++. ...| -..+|....+.+++.|+++.|...+
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1111233321 22222222111111222222112211 1122 3458888889999999999999888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 518 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
=.+.+..+ +..+...+..+...|+...|+.++++..+.+.
T Consensus 1694 l~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1694 LNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred Hhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 87777774 45899999999999999999999999986554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.067 Score=43.40 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 047146 422 IEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 472 (608)
..|+..++.+++.+|+..|++..|.++.+...+.++++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666666666666666666666666666666555566666555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.3 Score=42.62 Aligned_cols=287 Identities=13% Similarity=0.051 Sum_probs=155.6
Q ss_pred hHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHh--hccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 189 SWTTLIQAYVK--MDYPTEAILSFFDMCQANLRPDGMILVIVLSAC--SKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 189 ~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
.|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..++.+- .-.|+++.|.+-|+.|.... +. -.--...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-Et--RllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ET--RLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HH--HHHhHHH
Confidence 35555555544 45666666665554322 444555566666543 34689999999999988641 11 1112223
Q ss_pred HHHHHHhcCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChH--HHHHHHHHHhc-
Q 047146 265 LIDMYLKCGNIPSARKVFDEMPV--K-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDF--TLVCVLNSCAN- 337 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~- 337 (608)
|.----+.|+.+.|..+-++.-. | -.-.+.+.+...+..|+|+.|+++++.-.+.. +.++.. .-..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33333457888888777666542 2 24467888999999999999999998776643 334432 22233333221
Q ss_pred --cCChHHHHHHHHHHHHcCCCCchhHH-HHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHH
Q 047146 338 --IGWLELGKWVHTYLDKNHINTDGFIG-NALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 338 --~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
..+...|...-.+..+ +.||..-- ..-..++.+.|++.++-++++.+=+ |.+..+ ..|....-.+.++.
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHH
Confidence 1233344443333333 23332211 1234566777777777777776643 333322 22333333333444
Q ss_pred HHHHHHH-CCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 047146 413 IFSEMSQ-VGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA-GLIREALDLIKSM 488 (608)
Q Consensus 413 ~~~~m~~-~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 488 (608)
-+++... ..++||. .....+..+....|++..|..--+...+ ..|....|..|.+.-... |+-.++...+.+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 4443322 1245544 3555566666667777666554444433 456666666666655433 6666666666554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.19 Score=48.41 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PLV-PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 541 (608)
++..+.-+|.+.+++.+|++..+.. ... +|....---..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5667788888999999998888877 333 36666656668899999999999999999999999998888888888777
Q ss_pred CChHH-HHHHHHHHHhC
Q 047146 542 NRWKE-ALKLRKKMKER 557 (608)
Q Consensus 542 g~~~~-A~~~~~~m~~~ 557 (608)
....+ ..++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 76655 48889999643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.1 Score=51.50 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-FVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
......+..++.-.|+++.|..+|++. ...||. .+|-.....+...|+.++|.+.++++.++.|..
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 333444444444444455555555554 333422 233333333444555555555555555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.5 Score=43.03 Aligned_cols=83 Identities=11% Similarity=0.165 Sum_probs=58.5
Q ss_pred CCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHH
Q 047146 79 QNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157 (608)
Q Consensus 79 ~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (608)
.+.|+.+|-.+|.-+..++..++ .+++++|... .+--...|..-+++=....+++..+.+|.+.++..+. ...|..
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~l 114 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWML 114 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHH
Confidence 45677889999999988888888 8888888642 2223346666677666677888888999888876543 555666
Q ss_pred HHHHHHh
Q 047146 158 LMRLYAV 164 (608)
Q Consensus 158 li~~~~~ 164 (608)
.+.---+
T Consensus 115 Yl~YIRr 121 (660)
T COG5107 115 YLEYIRR 121 (660)
T ss_pred HHHHHHh
Confidence 5554333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.012 Score=43.30 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-------P-LVPD-AFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
+++.+...|...|++++|+..+++. + ..|+ ..++..+...+...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555554444443 1 1122 34555666667777777777777766654
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.049 Score=49.64 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=31.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEG---DGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
|..++...|++++|..+|..+.+-.|++ |..+.-|+.+..+.|+.++|..+|+++.++-
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 3444555555555555555555544433 2345555555555555555555555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.036 Score=46.86 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCccCCc
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK-----ERKVKKTPG 564 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 564 (608)
....++..+...|+++.|...++.+...+|-+...|..++.+|...|+..+|.+.++++. +-|+.|.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 455567778899999999999999999999999999999999999999999999999885 346665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.076 Score=42.13 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=70.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhCCC
Q 047146 470 DLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD----GAYILMTNIYSSKNR 543 (608)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 543 (608)
-+++..|+++.|++.|.+. .+-| ....||.-..++.-.|+.++|..-+++++++.-+.. ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566788888888888776 4444 677888888888889999999988888888743332 257777888889999
Q ss_pred hHHHHHHHHHHHhCCCc
Q 047146 544 WKEALKLRKKMKERKVK 560 (608)
Q Consensus 544 ~~~A~~~~~~m~~~~~~ 560 (608)
-+.|..-|+..-+-|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999988888776643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.24 Score=40.65 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHh
Q 047146 469 VDLFGRAGLIREALDLIKSM----PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG---AYILMTNIYSS 540 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 540 (608)
.....+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.+++.|.++. ++...+-.+.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 33445667777777777777 2222 3345556777888888888888888888888887764 22333333333
Q ss_pred CCC---------------hHHHHHHHHHHHhCC
Q 047146 541 KNR---------------WKEALKLRKKMKERK 558 (608)
Q Consensus 541 ~g~---------------~~~A~~~~~~m~~~~ 558 (608)
... ..+|..-|+++.++-
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 332 556666676666543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=3.1 Score=44.61 Aligned_cols=114 Identities=10% Similarity=-0.025 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHhHhhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQT--EHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
+.+.|...+........+.+.. .++..++......+...+|...++.. +...|...+.--+......++++.+...+
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 3455555555554423333321 22333333333332244555555544 11123333333344444566666655555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 518 ENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 518 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
..+-+.....+..+.-++.++...|+.++|...|++.
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5554333334445556666666666666666666665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.16 Score=41.29 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHh--------------HhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDM--------------SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--- 488 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 488 (608)
..++..++.++++.|+++....+++.. .....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345555555666666665555555433 111233445555555555555555555555554443
Q ss_pred -CCCCCHHHHHHHHH
Q 047146 489 -PLVPDAFVWGALLG 502 (608)
Q Consensus 489 -~~~p~~~~~~~l~~ 502 (608)
++.-+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33334455555553
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.024 Score=36.14 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.++..++..|.+.|++++|++++++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999853
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=43.55 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHh----hcCCCCChhH
Q 047146 394 YTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSR----VYNLQPQTEH 464 (608)
Q Consensus 394 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 464 (608)
...++..+...|++++|+.+.+++... .| |...+..++.++...|+...|.+.|..+.+ ..|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455556666666666666666663 33 455666667777777777766666665533 3456665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2 Score=39.08 Aligned_cols=193 Identities=21% Similarity=0.154 Sum_probs=95.8
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HH
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMK-----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS-AC 436 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~ 436 (608)
.......+...+++..+...+.... ......+......+...+.+..+...+.........+. ........ .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHH
Confidence 3444444555555555555444432 12333444444445555555556666555554322221 11111122 45
Q ss_pred hccccHHHHHHHHHHhHhhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCCHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNL--QPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD--AFVWGALLGACKIHAKVE 511 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~~~ 511 (608)
...|+++.+...+..... ..- ......+......+...++.+.|...+... ...++ ...+..+...+...++++
T Consensus 141 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 141 YELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 556666666666665533 111 012222333333345556666666666555 22232 445555555666666666
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.+...+.......|.....+..+...+...|.++++...+.+..+.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666664445555555555555566666666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.19 Score=45.96 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=50.0
Q ss_pred ccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM----PLVP-DAFVWGALLGACKIHAKVE 511 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 511 (608)
+.|++..|...|...++.+.-.+ ....+-.|..++...|++++|...|..+ +..| -+..+--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555555555555221111 1233444556666666666665555554 2222 2344555555666777777
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 047146 512 LAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~ 529 (608)
+|...|+++.+..|..+.
T Consensus 233 ~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 233 EACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHCCCCHH
Confidence 777777777777777653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.11 Score=51.21 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT----EHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
.++.+..+|.+.|++++|...|+...+ +.|+. ..|..+..+|...|+.++|++.+++.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444455555555555555554443 23331 12444444444555555554444444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.6 Score=43.71 Aligned_cols=112 Identities=8% Similarity=0.024 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccccHHHH
Q 047146 373 CGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF----VGVLSACSHAGLVEEG 445 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~a 445 (608)
.|+..+|-..++++.+ .|..+++.-=.+|...|+.+.-...++++... ..||...| ..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3555555555555543 25555655566666666666666666665543 23333222 1222234456666666
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 446 CKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 446 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
++.-++..+ +.+ |.-.-.+....+.-.|++.++.+++.+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 665555543 222 3333345555555666666666665554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.9 Score=39.60 Aligned_cols=80 Identities=9% Similarity=-0.087 Sum_probs=34.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHG-KAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
+..+-...+.++++.++.+....+...+..+|...-...+.++.+.+ ....+...+..+.. .+|..+-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 33444445555555555433333333333444444444444444332 12334444444442 334444445555555
Q ss_pred cccc
Q 047146 438 HAGL 441 (608)
Q Consensus 438 ~~g~ 441 (608)
+.|+
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5555
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=5.3 Score=42.56 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 467 CMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
-++..+....+.+.+..+.+..+-. |+..|..+++.+.+.+.++.-.+...++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3566677788889999998888633 888999999999998877777666666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.95 Score=45.85 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=100.1
Q ss_pred HHHHHhCCCchHHHHHHH-HHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhc
Q 047146 194 IQAYVKMDYPTEAILSFF-DMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 272 (608)
....+-.++++++.++.+ .-.-..++ ..-...+++-+-+.|..+.|.++-. |. ..-.+...++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----------D~---~~rFeLAl~l 331 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT-----------DP---DHRFELALQL 331 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------------H---HHHHHHHHHC
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC-----------Ch---HHHhHHHHhc
Confidence 344556788888777765 21111122 4446777888888888888887743 22 1234556789
Q ss_pred CChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047146 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352 (608)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (608)
|+++.|.++-++.. +...|..|.....++|+++-|.+.|.+... +..++-.|...|+.+.-.++.....
T Consensus 332 g~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 332 GNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp T-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999888776 566899999999999999999999887653 4556666777777777777776666
Q ss_pred HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 353 KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 353 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
..|- ++....++.-.|+.++..+++.+-
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6552 244455555667777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.3 Score=45.43 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=75.6
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCCHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYG-CMVDLFGRAGLIREALDLIKSM-PLV-----PDAFVWGALLGACKIHAKVE 511 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~~~~~ 511 (608)
..+.+.|.+++..+.+. -|+...|. .-.+.+...|++++|++.|++. ..+ -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45677788888877663 35544443 3456667778888888888865 111 12334444556677788888
Q ss_pred HHHHHHHHHHhcCCCCCchHH-HHHHHHHhCCCh-------HHHHHHHHHHHh
Q 047146 512 LAEIVMENLVRFEPEGDGAYI-LMTNIYSSKNRW-------KEALKLRKKMKE 556 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~m~~ 556 (608)
+|...+..+.+...-+...|. ..+.+|...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888887666555555 344455677777 888888888754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.5 Score=38.49 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=90.3
Q ss_pred HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcc----
Q 047146 371 AKCGRIDQAFGVFRSMKCR------DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDEVTFVGVLSACSHA---- 439 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~---- 439 (608)
.+.|++++|.+.|+.+... ...+--.++-++.+.+++++|+..+++....- -.|| ..|...|.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 3557777777777776532 12334445556667777777777777776632 1222 2343344443321
Q ss_pred ---ccH---HHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHH
Q 047146 440 ---GLV---EEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFV--WGALLGACKIHAKVE 511 (608)
Q Consensus 440 ---g~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~ 511 (608)
.|. .+|..-|+.++++ -|+. .-..+|..-+..+. |... =..+.+-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r---yPnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR---YPNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH---CCCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 122 2233333333332 1211 11111111111110 0010 123446688899999
Q ss_pred HHHHHHHHHHhcCCCCCc---hHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 512 LAEIVMENLVRFEPEGDG---AYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.|..-++.+++..|+.+. .+..+..+|...|..++|.+.-+-+.
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999999988776654 56677788999999999888766654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.2 Score=42.54 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=64.9
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 478 IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..+|.++-++. .+.| |+.....+..+....++++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555555554 4444 777777777777788889999999999999999999999999999999999999999999865
Q ss_pred hCCC
Q 047146 556 ERKV 559 (608)
Q Consensus 556 ~~~~ 559 (608)
+..+
T Consensus 400 rLsP 403 (458)
T PRK11906 400 QLEP 403 (458)
T ss_pred ccCc
Confidence 5444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.85 Score=42.24 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=75.6
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA---LLGACKIHAKVE 511 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 511 (608)
.....|++.+|..+|+..... .+-+....-.|+.+|...|+.+.|..++..++..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345667777777777777662 222345566677888888888888888888754333222322 223333333332
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.. -++.-...+|++...-..++..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222 2333445678888888888888888888888888777776543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.07 E-value=3.9 Score=40.28 Aligned_cols=133 Identities=15% Similarity=0.113 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYN-LQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAF-VWGALLGA 503 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~ 503 (608)
..|...+++-.+..-++.|..+|-+..+ .+ +.+++..+++++..++ .|+...|.++|+-- ..-||.. .-...+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4567777777888889999999999988 45 6678888999988765 57788899998865 3345544 44455667
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEG--DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
+...++-+.|+.+|+..++.-.++ ...|..++.--..-|+...+..+=++|.+.-.+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 788899999999999877653333 4689999999999999999999988888765543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.53 Score=41.22 Aligned_cols=150 Identities=22% Similarity=0.194 Sum_probs=89.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh--hHHHHHHHHHHhcCCHH
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT--EHYGCMVDLFGRAGLIR 479 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~ 479 (608)
..|-..-|.-=|.+... +.|+. ..||.+.--+...|+++.|.+.|+...+ +.|.- ...|.-| ++.-.|++.
T Consensus 77 SlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi-~~YY~gR~~ 150 (297)
T COG4785 77 SLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGI-ALYYGGRYK 150 (297)
T ss_pred hhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccce-eeeecCchH
Confidence 33444444444454444 67875 5888888889999999999999998865 55642 2222222 233568888
Q ss_pred HHHHHHHhC----CCCCCHHHHHHHHH--------------HHHHcCCHHH-------------HHHHHHHHHhcCCCC-
Q 047146 480 EALDLIKSM----PLVPDAFVWGALLG--------------ACKIHAKVEL-------------AEIVMENLVRFEPEG- 527 (608)
Q Consensus 480 ~A~~~~~~~----~~~p~~~~~~~l~~--------------~~~~~~~~~~-------------a~~~~~~~~~~~p~~- 527 (608)
-|.+-+... +..|-...|.-+.. -+..+.+-.. -+.+++++.+...++
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 887766554 33343345544432 1111111111 112233333222222
Q ss_pred ------CchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 528 ------DGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 528 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.+|..|+.-|...|+.++|..+|+-....+
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2589999999999999999999999876544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.8 Score=38.17 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCCCC-----------------chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 512 LAEIVMENLVRFEPEGD-----------------GAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.|..-++.+++..|++. ..=...+..|.+.|.+--|..-+++|.+.
T Consensus 134 ~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 134 AAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 34445555556666654 12346788899999999999999999875
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.29 Score=44.60 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=79.8
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----------
Q 047146 378 QAFGVFRSMK--CRDVYSYTAMIVGLAIH-----GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG---------- 440 (608)
Q Consensus 378 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------- 440 (608)
..++.|.... ++|-.+|-+++..+... +..+-....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4456666666 67888888888888654 456667777889999999999999999998875542
Q ss_pred ------cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH
Q 047146 441 ------LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 441 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (608)
+-+-++.+++.|.. +|+.||.++-..|+.++++.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 33457889999988 89999999999999999988864
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.96 Score=37.20 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 047146 510 VELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~ 528 (608)
...|..-|+.+++..|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5578888888888889875
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.82 E-value=2 Score=35.78 Aligned_cols=42 Identities=19% Similarity=0.100 Sum_probs=21.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
++..+...+.......+++.+.+.+ ..++...+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3444444444555555555554444 24445556666666554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=3.2 Score=37.61 Aligned_cols=197 Identities=16% Similarity=0.097 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CCh-hHHHHHHH-H
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKN-HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDV-YSYTAMIV-G 400 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 400 (608)
..+......+...+....+...+...... ........+......+...+++..+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444444555555554444444332 2233344445555566666667777777766553 221 22333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhc
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEP----DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRA 475 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 475 (608)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7888999999999988855 333 233444444456778899999998888876 2333 367778888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 476 GLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 476 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
++++.|...+... ...|+ ...+..+...+...+..+.+...+++..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999988887 44554 445555555555777899999999999988887
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.71 E-value=8.2 Score=42.97 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=79.1
Q ss_pred CChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHH----hccCChHHHHHHH
Q 047146 273 GNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSC----ANIGWLELGKWVH 348 (608)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~ 348 (608)
+++++|+.-+.++. ...|.-.+..--++|.+++|+.++ .|+...+..+..+| ...+.++.|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45666666555554 223444444445566666666654 57777666665554 4556666666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY---TAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 349 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
...-+. .--+.+|..+|++.+|..+-.++..+-.... ..|+.-+...+++-+|-++..+-..
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 544322 2345677788888888888887765433332 5677778888888888888776654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.67 E-value=6 Score=40.57 Aligned_cols=118 Identities=11% Similarity=-0.004 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-----PLVPDAFVWGALL 501 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~ 501 (608)
.+|...+.--...|+.+...-.|++..- ....-...|--.++-....|+.+-|..++... +..|....+.+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3555555555555666665555555433 11112234444444444445555555554443 1222222222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHH
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
+-..|++..|..+++.+.+-.|.....-..-+....+.|..+.+.
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 233456666666666666555554444444445555555555555
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.59 E-value=6.4 Score=40.55 Aligned_cols=157 Identities=10% Similarity=0.022 Sum_probs=99.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCH-----hHHHHHHHHhhc----cCCchHHHHHHHHHHHccCCCCCch
Q 047146 190 WTTLIQAYVKMDYPTEAILSFFDMCQAN-LRPDG-----MILVIVLSACSK----LGDLSLGIKIHRYITDNHFNLSPDV 259 (608)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~ 259 (608)
...++....-.|+-+.+++++.+-.+.+ +.-.. -+|..++..+.. ..+.+.+.+++..+.+.-+ +.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP----~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP----NS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC----Cc
Confidence 3455666666788888888887764432 32111 124444444333 4567888899988888732 44
Q ss_pred HHH-HHHHHHHHhcCChHHHHHHHccCCC-------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHH
Q 047146 260 FIH-NALIDMYLKCGNIPSARKVFDEMPV-------KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCV 331 (608)
Q Consensus 260 ~~~-~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 331 (608)
..| -.-.+.+...|++++|++.|++... -....+--+.-.+.-..+|++|.+.|..+.+.. ..+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 333 3445667778999999999986542 123345556667888899999999999998864 4555555555
Q ss_pred HHHHh-ccCCh-------HHHHHHHHHH
Q 047146 332 LNSCA-NIGWL-------ELGKWVHTYL 351 (608)
Q Consensus 332 l~~~~-~~~~~-------~~a~~~~~~~ 351 (608)
..+|. ..++. ++|..++..+
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 54443 45555 6666666655
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.51 E-value=6.5 Score=40.32 Aligned_cols=182 Identities=12% Similarity=0.078 Sum_probs=122.1
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
+..+|+.-++.-.+.|+.+.+.-+|++..-| -...|-..+.-....|+.+-|..++.+..+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456677777778889999999999887654 3345666655555668888888777776654333222222222233
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-----HHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREAL---DLIKSM-PLVPDAFVWGALL-----GACK 505 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~ 505 (608)
+...|+++.|..+++.+.++ . |+ ...-..-+....+.|..+.+. +++... +.+-+..+...+. -.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999884 3 54 333344466677888888887 555544 2222333332222 1234
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
-.++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 57889999999999999999999999999988877663
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.49 E-value=8.1 Score=41.29 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
++..+.+..+.+.+..+.+. .++.+|..|..+...+++.+.+++-.++..+..
T Consensus 711 l~~~~~q~~d~E~~it~~~~---~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCER---LGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHH---hCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 44556666777766665543 467788899999999999987666555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.3 Score=42.09 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=59.8
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCC--C--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQ--P--QTEHYGCMVDLFGRAGLIREALDLIKSM-------PLVPDAFVWGA 499 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ 499 (608)
++..+....+.++++.+.|+.+.+...-. | ...++-.|...|.+..++++|.-+..+. +++.=..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34445555556666666666554411111 1 2345566666666666666554443332 22211112222
Q ss_pred -----HHHHHHHcCCHHHHHHHHHHHHhc--CCCC----CchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 500 -----LLGACKIHAKVELAEIVMENLVRF--EPEG----DGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 500 -----l~~~~~~~~~~~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
+.-++...|..-.|.+.-+++.++ ...| ......++++|...|+.+.|..-++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 224455666666666666655543 1222 22344566666666666665544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.44 E-value=2.5 Score=35.23 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=16.3
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCR---DVYSYTAMIVGLAI 403 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 403 (608)
++..+...+.......+++.+... +....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 444444444444444444443321 23344444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.42 E-value=4.8 Score=38.44 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhCCChHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~ 550 (608)
....++.+|...|.-++-..-
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h 353 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAH 353 (518)
T ss_pred HHHHHHHHHHhccchhHHHHH
Confidence 345667777666665544333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.34 E-value=4.5 Score=37.70 Aligned_cols=175 Identities=15% Similarity=0.067 Sum_probs=108.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcC
Q 047146 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYN 457 (608)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 457 (608)
...+.++.+..+....--.-.......|++.+|..+|+...... .-+......+..++...|+.+.|..++..+-.+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 33444444443322222223345677888889999888888752 223456667788889999999999888877441 1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCchHHHH
Q 047146 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF--EPEGDGAYILM 534 (608)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 534 (608)
-.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|...+=.+++. +-.+......|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111122234555566555555555555553455 6666667778888899999998877777655 45566788888
Q ss_pred HHHHHhCCChHH-HHHHHHHH
Q 047146 535 TNIYSSKNRWKE-ALKLRKKM 554 (608)
Q Consensus 535 ~~~~~~~g~~~~-A~~~~~~m 554 (608)
+.++.-.|.-+. +.+..++|
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 888888875444 33344433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.30 E-value=5.8 Score=38.88 Aligned_cols=74 Identities=16% Similarity=0.061 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCC-------ChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCChHHHHHH
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMPVK-------NVVSWNSMIAGLTH---RGQFKEALDIFRRMQGLGLKPDDFTLVCV 331 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 331 (608)
...++-+|-...+++..+++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..|+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555577777777777777777632 11111223344455 67888888888876555556777777666
Q ss_pred HHHH
Q 047146 332 LNSC 335 (608)
Q Consensus 332 l~~~ 335 (608)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.95 E-value=5.9 Score=37.63 Aligned_cols=19 Identities=11% Similarity=-0.209 Sum_probs=12.7
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 047146 503 ACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 503 ~~~~~~~~~~a~~~~~~~~ 521 (608)
.+.+.++++.|.+.++-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3556777877777776543
|
It is also involved in sporulation []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.2 Score=29.52 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 44555566666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.23 Score=42.81 Aligned_cols=94 Identities=13% Similarity=0.031 Sum_probs=39.2
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCC
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQ---TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-FVWGALLGACKIHAK 509 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~ 509 (608)
-+.+.|++++|..-|..+.....-.+. ...|..-..++.+.+.++.|++-.... .+.|.. ....--..+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355556666666666655542111111 122333333444445555554444333 222211 111111223444445
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 047146 510 VELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~ 528 (608)
+++|..-+.++++.+|...
T Consensus 184 ~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHHHHHHhCcchH
Confidence 5555555555555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.77 E-value=2.1 Score=34.43 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=68.8
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHH
Q 047146 199 KMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278 (608)
Q Consensus 199 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 278 (608)
-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+. + |. ..||++...
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-F----Di----------s~C~NlKrV 75 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-F----DI----------SKCGNLKRV 75 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-----G----------GG-S-THHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-c----Cc----------hhhcchHHH
Confidence 345566666666665443 24445555555444444444444444333221 1 11 123333333
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 047146 279 RKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356 (608)
Q Consensus 279 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (608)
...+-.+-. +....+.-+.....+|.-+.-.+++.++...+ .+++.....+..+|.+.|+..++.+++..+-+.|+
T Consensus 76 i~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 76 IECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333322221 23344556677778888888888887776533 67777777788888888888888777777766664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=2 Score=36.37 Aligned_cols=83 Identities=8% Similarity=-0.008 Sum_probs=36.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (608)
.+.|++++|..+|+-+... .| |..-+..|..+|-..+++++|...|..... .. .-|+...-....+|...|+.+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHH
Confidence 3445555555555554442 22 222333333344444555555555554433 11 1122222233444555555555
Q ss_pred HHHHHHhC
Q 047146 481 ALDLIKSM 488 (608)
Q Consensus 481 A~~~~~~~ 488 (608)
|+..|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 55554444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.17 Score=29.89 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.+|..+...+...|++++|...++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34556666666777777777777777766665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.54 E-value=8.3 Score=38.04 Aligned_cols=150 Identities=9% Similarity=-0.024 Sum_probs=75.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC--hh
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP---DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ--TE 463 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 463 (608)
....+|..++..+.+.|+++.|...+.++...+..+ .......-.......|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777777888888888888777777643222 2233333455566677777777777666651 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 464 HYGCMVDLFGRAGLIREALDL-IKSMPLVPDAFVWGALLGACKIH------AKVELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
....+...+.. ..+..... ........-...+..+...+... ++.+++...+..+.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111100000 00000000 00000000112222233333333 77788888888888888887777777776
Q ss_pred HHHhC
Q 047146 537 IYSSK 541 (608)
Q Consensus 537 ~~~~~ 541 (608)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 66544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.8 Score=43.83 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=96.5
Q ss_pred HHHhHhcCCHHHHHHHHh--hcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 047146 367 VDMYAKCGRIDQAFGVFR--SMK-CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 443 (608)
.+...-.|+++++.++.. ++. .-+..-.+.++.-+.+.|.++.|+.+..+-.. - .....+.|+++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------r----FeLAl~lg~L~ 335 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH--------R----FELALQLGNLD 335 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------H----HHHHHHCT-HH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH--------H----hHHHHhcCCHH
Confidence 344455688888665554 211 11244577778888888888888887443221 1 34456788888
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 444 EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
.|.++.+. .++...|..|.+...+.|+++-|++.+.+.+ | |..|+-.|...|+.+.-.++.+.+...
T Consensus 336 ~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---d---~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---D---FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---C---ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88654332 2467789999999999999999999998884 2 455666677788877766666665544
Q ss_pred CCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 524 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
+. ++.....+.-.|+.++..+++.+-
T Consensus 403 ~~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 GD-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cC-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33 344445556678888888877653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.40 E-value=2.3 Score=42.50 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=28.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPE--GDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+...+.+.|+.++|.+.+.++.+..|. +..+...|+..|...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444445555555555555555544443 22344455555555555555555555543
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.19 Score=30.27 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999854
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.97 Score=41.36 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=76.5
Q ss_pred HHHHHccCC--CCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC-----------
Q 047146 278 ARKVFDEMP--VKNVVSWNSMIAGLTHR-----GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG----------- 339 (608)
Q Consensus 278 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 339 (608)
.++.|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345565555 56677777777766543 556667777888888899899999988888765543
Q ss_pred -----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH-HHHHHHHhhc
Q 047146 340 -----WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI-DQAFGVFRSM 386 (608)
Q Consensus 340 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 386 (608)
+-.-++.++++|...|+-||..+-..|++++.+.+-. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345677888888888888888888888888877653 2333443333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.93 E-value=4.5 Score=34.53 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChh
Q 047146 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 307 (608)
..+++.+...|++-+|.++.+....-+...-..++.+-.+.++..
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHH
Confidence 334445555555555555555443333333344444444444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.90 E-value=11 Score=37.47 Aligned_cols=442 Identities=10% Similarity=0.079 Sum_probs=211.2
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCc-----hhHHH-HHHHHHccCCchHHHh-----hCCCCCcchHHHHHHHH--HcC
Q 047146 30 RLESSKSVGQLKQFHAFIIKTGSPQH-----QTQIL-YDKIISLSRGNEIENL-----SLQNPQVYLYNFIIQCL--SNA 96 (608)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~-l~~~~~~~g~~~~A~~-----~~~~~~~~~~~~li~~~--~~~ 96 (608)
.++..+++.++..++..+.+..-... ..... ++++|-... ++.-.. +-..| ...|-.+..++ .+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 45555678888888888876433221 23344 777775542 333222 11222 33455555543 345
Q ss_pred CCccH-HHHHHHHHHC--CCCC------------CceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcC----CcHhHHHH
Q 047146 97 NPLEA-IALYREMLIK--GLLP------------NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALL----SNVYVFNT 157 (608)
Q Consensus 97 ~~~~~-~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ 157 (608)
+.+.. ++.+...... +..| |..-=+..+.++...|++.+++.+++.++..=++ .+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 56655 6666665543 2221 1111223344566778888888888777665443 67777877
Q ss_pred HHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc--
Q 047146 158 LMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL-- 235 (608)
Q Consensus 158 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-- 235 (608)
++-++++.=-++--..... .+-|| |--+|..|.+. +..++.-.-..+.|-...+..++....-.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~-----dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSS-----DLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred HHHHHhHHHHHHHHHhccc-----ccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 7766665322221111111 11111 33444444332 11111111112344444444454444322
Q ss_pred CCchHHHHHHHHHHHccCCCCCch-HHHHHHHHHHHhcCChHHHHHHHccCC--------CCChhhHHHHHHHHHhcCCh
Q 047146 236 GDLSLGIKIHRYITDNHFNLSPDV-FIHNALIDMYLKCGNIPSARKVFDEMP--------VKNVVSWNSMIAGLTHRGQF 306 (608)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~ 306 (608)
..+.--.+++....+. -+.|+- -+...|+.-+.+ +.+++..+-+.+. +.=+.++..++....+.++.
T Consensus 239 e~l~~~mq~l~~We~~--yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T 314 (549)
T PF07079_consen 239 ERLPPLMQILENWENF--YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT 314 (549)
T ss_pred hhccHHHHHHHHHHhh--ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2233344455444333 222232 233444444443 3333333322221 23345788888888888888
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHH-------HHHHh-ccCChHHHHH---HHHHHHHcCCCCchhHHHHHHH---HhHh
Q 047146 307 KEALDIFRRMQGLGLKPDDFTLVCV-------LNSCA-NIGWLELGKW---VHTYLDKNHINTDGFIGNALVD---MYAK 372 (608)
Q Consensus 307 ~~A~~~~~~m~~~g~~p~~~t~~~l-------l~~~~-~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~li~---~~~~ 372 (608)
.+|...+.-+... .|+...-.-+ -+..+ .-.++..-.. +|..+...++..- ....-|+. -+-+
T Consensus 315 ~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 315 EEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHh
Confidence 8888888766553 4443311111 11111 1112222222 2222222222111 11111211 1223
Q ss_pred cCC-HHHHHHHHhhcCC---CChhHHHHHH----HHHHH---cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--
Q 047146 373 CGR-IDQAFGVFRSMKC---RDVYSYTAMI----VGLAI---HGKAWKALDIFSEMSQVGIEPDE----VTFVGVLSA-- 435 (608)
Q Consensus 373 ~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~-- 435 (608)
.|. -++|..+++.+.+ -|..+-|... .+|.+ .....+-+.+-+-+.+.|+.|-. ..-+.+..|
T Consensus 392 ~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred cCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 333 6777777776653 3443333322 22322 12233344444445566666632 233333333
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGA 499 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 499 (608)
+...|++.++.-.-..+. .+.|++.+|..+.-.+....++++|..++..+| |+..++++
T Consensus 472 Lysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 455677777765554443 367777788777777777778888888887773 45544443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.65 Score=39.00 Aligned_cols=70 Identities=16% Similarity=0.032 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 474 RAGLIREALDLIKSM-PLVPDAFVWGAL-LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 474 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
+.++.+++..++..+ -.+|.......+ ...+...|++.+|.++|+.+.+..|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 455666666666655 233332222221 1234556666666666666655555555444444444444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.43 Score=38.02 Aligned_cols=55 Identities=20% Similarity=0.076 Sum_probs=51.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
-+....|+.+.|++.|.+++.+-|..+++|+.-+..|.-+|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999998875
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.29 E-value=8.4 Score=34.81 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 047146 293 WNSMIAGLTHRGQFKEALDIFRRM 316 (608)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~~~~~m 316 (608)
|..-..+|-..+++++|...+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444555555555555544444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.6 Score=41.10 Aligned_cols=160 Identities=10% Similarity=0.011 Sum_probs=121.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHH----HHHHHHhcCC
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGC----MVDLFGRAGL 477 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~ 477 (608)
--+|+..+|...++++.+. .+.|-..+...=.+|...|+...-...++++.. ...|+...|.. +.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3468888999999999885 455666777777899999999999999999876 34566554443 3445568999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CchHHHHHHHHHhCCChHHHHHHH
Q 047146 478 IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG----DGAYILMTNIYSSKNRWKEALKLR 551 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 551 (608)
+++|++.-++. .+.| |.-.-.++...+...|+.+++.++.++-...-... ...|-+.+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888 6665 66677788888888999999999988765543222 246778888888899999999999
Q ss_pred HHHHhCCCccCCc
Q 047146 552 KKMKERKVKKTPG 564 (608)
Q Consensus 552 ~~m~~~~~~~~~~ 564 (608)
++=.-+...++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.7 Score=38.07 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.++.+++..+++.+.-+.|+.+..-..-+.++...|+|++|..++++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4555555555555555555555555555555555555555555555554433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.56 E-value=22 Score=37.98 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 047146 408 WKALDIFSEMSQVGIEP-----DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREAL 482 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 482 (608)
+..++++.+.....+-| +.......+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.++.++|+
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHH
Confidence 34555555554433333 122345556667777777777766666632 3344444445667788888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047146 483 DLIKSMPLVPDAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 483 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 513 (608)
++.++- .|...|..||.-+...-.+-.+
T Consensus 682 efvKeq---~D~eLWe~LI~~~ldkPe~~~~ 709 (846)
T KOG2066|consen 682 EFVKEQ---DDSELWEDLINYSLDKPEFIKA 709 (846)
T ss_pred HHHHhc---CCHHHHHHHHHHhhcCcHHHHH
Confidence 877764 4888999999877555444333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.46 E-value=3.9 Score=36.85 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=24.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDG------AYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
.+.+.+..++++|-..+.+-....-.-.. .|...+-+|....++..|.+.++.-
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 34445555555555444433222222211 1333444445555666666666544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.2 Score=41.60 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..++..+...|+.+.+...++++.+..|-+...|..++.+|.+.|+...|+..++++.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555555555555555555553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.42 E-value=22 Score=36.00 Aligned_cols=175 Identities=7% Similarity=0.004 Sum_probs=112.5
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
..|.....+++..+...-...-++.+-.+|.. .+-..|..+++.|.++ ..++-..+|+++.+. .-|.+.+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHH
Confidence 34455556777777777777777777777763 4666788888888888 567788888888884 455555555555
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQ------TEHYGCMVDLFGRAGLIREALDLIKSM----PLVPDAFVWGALLGAC 504 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 504 (608)
.+...++.+.+..+|.++.. .+-|. .+.|.-|+... ..+.+....+...+ +...-.+.+.-+..-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55555888888888888766 23331 23455554432 23555555555554 3334455566666677
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
....++++|++++..+++.+..+.-+.-.++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 7888888888888888777666554444444333
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.5 Score=29.18 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhhCCC
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKNHGY 606 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 606 (608)
....++-++.+.|++++|.+..+.+.+ ..|++...-.+...+-+++++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 345678889999999999999999984 458898888888888889998884
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.68 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
+|..+...+...|++++|...++++.++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4455556666666666666666666666653
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.03 E-value=1.7 Score=40.49 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=64.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH-----CCCCCCHhHHH
Q 047146 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQ-----ANLRPDGMILV 226 (608)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~ 226 (608)
..++..++..+..+|+++.+...++++... .+-+...|..+|.+|.+.|+...|+..|+++.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 457788899999999999999999887663 345888899999999999999999999998755 57888777655
Q ss_pred HHHHH
Q 047146 227 IVLSA 231 (608)
Q Consensus 227 ~ll~~ 231 (608)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=89.91 E-value=5.2 Score=32.42 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=14.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
-+|.+.++++.++++++.+++.+|++.
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 445555555555555555555555553
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=5.8 Score=39.37 Aligned_cols=124 Identities=11% Similarity=0.053 Sum_probs=70.1
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 514 (608)
...|++-.|-+-+....+.+.-.|+ ........+...|+++.+...+... -+.....+..++++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3445555554444444332222333 2222333445667777777766665 12334556666777777777777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 047146 515 IVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKT 562 (608)
Q Consensus 515 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 562 (608)
...+.++..+-+++++....+..-...|-+|++...|++...-+...+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 777777766666655554444445556677777777777765444333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.79 Score=43.06 Aligned_cols=109 Identities=12% Similarity=0.015 Sum_probs=77.2
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCC
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLV-PDAFVWGALLGACKIHAK 509 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~ 509 (608)
.+-|.++|.+++|+..|..... +.| +..++..-..+|.+..++..|..-.+.. .+. .-...|.--..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 6678999999999999998865 456 7888888889999999998887766655 211 112244444445556788
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHH
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
.++|.+-++.++++.|.+.. |-..|.+.....++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 89999999999999999653 333444444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.46 E-value=26 Score=35.48 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=26.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccccHHHHHHHHHHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEP--DEVTFVGVLSACSHAGLVEEGCKHFLDM 452 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 452 (608)
+...+.+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444445555555555555555431 11 1124444555555555555555555554
|
The molecular function of this protein is uncertain. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.79 Score=27.52 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777778888888888888775543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.41 E-value=12 Score=31.60 Aligned_cols=88 Identities=16% Similarity=0.044 Sum_probs=51.8
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQT-EHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 512 (608)
.-...++.+.+..++..+.- +.|.. ..-..-...+.+.|++.+|+++|+++ ...|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34566788888888877754 45543 22233345567888888888888888 344555555666666654433333
Q ss_pred HHHHHHHHHhcCC
Q 047146 513 AEIVMENLVRFEP 525 (608)
Q Consensus 513 a~~~~~~~~~~~p 525 (608)
=....+++.+..+
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3333444444444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.40 E-value=10 Score=36.20 Aligned_cols=62 Identities=8% Similarity=0.134 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcccc--HHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 408 WKALDIFSEMSQVGIEPDEV--TFVGVLSACSHAGL--VEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
+.+..+|+.+...|+..+.. ....++..+..... ..++.++++.+.+ .++++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHH
Confidence 45666777777777666443 33444433332222 3466677777766 577776666655443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.22 E-value=3.9 Score=35.63 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCch----H
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSMP---LVP--DAFVWGALLGACKIHAKVELAEIVMENLVRFE--PEGDGA----Y 531 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~----~ 531 (608)
..+..+.+.|.+.|+.++|.+.+.++. ..| -...+..++..+...+++..+...++++...- +.+... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456677778888888888888887771 122 23355667777778888888888877777552 222211 1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHH
Q 047146 532 ILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
..-+-.+...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 12223344567888888887655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.75 E-value=6.3 Score=34.37 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV--TFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555566666666666666655544444332 444555555556666666555555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.62 Score=27.29 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..+..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.51 E-value=7.5 Score=29.74 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 409 KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.+..+.+-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 566667777777889999999999999999999999999999988754433 336766664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.33 E-value=71 Score=39.11 Aligned_cols=312 Identities=9% Similarity=-0.007 Sum_probs=158.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCC--CCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANL--RPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY 269 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~ 269 (608)
++..+-.+.+.+.+|+..+++-..... .-...-|..+...|+..++++...-+...... +.. ....|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-------~~s-l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-------DPS-LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-------Ccc-HHHHHHHH
Confidence 455566778889999999988411111 11122344444489999999988777664221 222 23345556
Q ss_pred HhcCChHHHHHHHccCCC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHH-HHHHHhccCChHHHH
Q 047146 270 LKCGNIPSARKVFDEMPV--KN-VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC-VLNSCANIGWLELGK 345 (608)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~ 345 (608)
...|++..|...|+++.. |+ ...++-++......|.++.++-..+-..... .+....+++ =+.+--+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 778999999999999984 33 5578878877778888888777655554431 222222222 222334566666666
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhc---CCHHHHHHHHhhcC----CC---------ChhHHHHHHHHHHHcCChHH
Q 047146 346 WVHTYLDKNHINTDGFIGNALVDMYAKC---GRIDQAFGVFRSMK----CR---------DVYSYTAMIVGLAIHGKAWK 409 (608)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~----~~---------~~~~~~~li~~~~~~~~~~~ 409 (608)
..+. ..+...-.. ..+.....+. ..+.. .+.++.+. .+ -...|..++....-..-...
T Consensus 1539 ~~l~---~~n~e~w~~--~~~g~~ll~~~~kD~~~~-~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSV--ESIGKLLLRNKKKDEIAT-LDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhhh---cccccchhH--HHHHHHHHhhcccchhhH-HHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5554 111111000 0011111111 11111 01111111 00 01233333333221111111
Q ss_pred HHHHHHHHHHCCCCCCHH------HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-----ChhHHHHHHHHHHhcCCH
Q 047146 410 ALDIFSEMSQVGIEPDEV------TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-----QTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 410 A~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~ 478 (608)
.. .. .++.++.. .|..-+.--....+..+-+-.+++..-.....| -..+|-...+...+.|++
T Consensus 1613 ~~----~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1613 IE----EL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HH----Hh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 10 00 11233221 122222221122222222222222222111222 246788888888889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 479 REALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 479 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+.|...+-..+...-+..+.-........|+...|..++++.++..
T Consensus 1687 q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9998766555212233444455667788999999999999999763
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.3 Score=25.88 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777777666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.18 E-value=11 Score=28.65 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047146 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317 (608)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 317 (608)
-++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++..-+.+|.
T Consensus 21 HqEA~tIAdwL~~~~~~---~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGES---EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCch---HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 45666666666554311 23333334456778999999999999999999999988754 46787888888888888
Q ss_pred hCCCCCChHHHH
Q 047146 318 GLGLKPDDFTLV 329 (608)
Q Consensus 318 ~~g~~p~~~t~~ 329 (608)
..| .|...+|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 877 56665554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.05 E-value=1.1 Score=26.46 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHccCCCCCchHHHHHHHHHHHhcCChHHHH
Q 047146 246 RYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 246 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
++.++..+. +..+|+.+..+|...|++++|+
T Consensus 3 ~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 444555433 6777777777777777777765
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.95 E-value=8.4 Score=29.14 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 488 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
+...|++.+..+.+++|.+.+++..|.++++.+.....++...|-.+.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 367899999999999999999999999999988765544444565554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.82 E-value=5.2 Score=30.57 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 488 MPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 488 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
+.+.|++.+..+.+++|.+.+++..|.++++.+...-.+....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 367899999999999999999999999999998877555544676664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.59 E-value=1 Score=24.68 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888888888775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.47 E-value=22 Score=31.15 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccccHHHHHHHHHHhHhhcCCCCChhH-----HHHHHHHHHhcCCHHHH
Q 047146 409 KALDIFSEMSQVGIEPDEVTFVG--VLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEH-----YGCMVDLFGRAGLIREA 481 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-----~~~l~~~~~~~g~~~~A 481 (608)
+.....+++....-+..-.++.. +...+...+++++|...++.... .|.-.. --.|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44455555555321211122222 23457778888888888887654 122222 23456677788899999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 482 LDLIKSMPLVP--DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 482 ~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
+..++... .+ .......-..++...|+-++|+..++++++..+++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99888772 12 22223333467888899999999999888887444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.09 E-value=12 Score=28.31 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 406 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++|+.+..+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466677777777788999999999999999999999999999988764333 4446665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.89 E-value=7.8 Score=36.36 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=69.9
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-R--------DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD 425 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 425 (608)
|.+....+...++..-....++++++..+-.+.. | ...+|-.+ +-.-++++++.++..=+..|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 4444455555666666667788888887776653 2 22233222 333467789999888889999999
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.++++.++..+.+.+++..|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999888887766
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.6 Score=26.97 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3678889999999999999999988864
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.52 E-value=1.9 Score=24.88 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=13.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.++.+.|++++|.+.++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444455555555555555555554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.37 E-value=62 Score=35.40 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=104.4
Q ss_pred HhcCCHHHHHHHHhhcC----CCCh-------hHHHHHHH-HHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 047146 371 AKCGRIDQAFGVFRSMK----CRDV-------YSYTAMIV-GLAIHGKAWKALDIFSEMSQV----GIEPDEVTFVGVLS 434 (608)
Q Consensus 371 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~ 434 (608)
....++++|..++.+.. .|+. ..|+++-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34577888888777653 2222 24555543 344678889999888887654 11223345666677
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhH---HHHH--HHHHHhcCCHHHH--HHHHHhC-----CCCCC----HHHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEH---YGCM--VDLFGRAGLIREA--LDLIKSM-----PLVPD----AFVWG 498 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l--~~~~~~~g~~~~A--~~~~~~~-----~~~p~----~~~~~ 498 (608)
+..-.|++++|..+.....+. .-.-+... |..+ ...+...|+...| +..+... +.+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777889999998877776652 22223322 3322 2334566633322 2333322 22332 23444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCc---hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRF----EPEGDG---AYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.++.++.+ .+.+..-.....+. .|.... .+..|+.++...|+.++|...++++..-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44444443 44444444444333 233222 23478889999999999999999997543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.03 E-value=5.7 Score=37.21 Aligned_cols=63 Identities=24% Similarity=0.148 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..+.+-.+|.+.++++.|.+..+.++.+.|+++.-+...+-+|.+.|.+..|..-++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 344556788999999999999999999999999888999999999999999999999887543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.81 E-value=1.1 Score=25.87 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
++..++.+|.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46788999999999999999999998654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.75 E-value=2.2 Score=24.92 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999999875
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.71 E-value=3.4 Score=39.02 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA 475 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 475 (608)
-..-|.++|.+++|+..|.+-.. +.| |.+++..-..+|.+...+..|+.-...+..- . ..-+..|+.-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHH
Confidence 35678999999999999999877 577 8899999999999999999887766666541 0 00122333333333334
Q ss_pred CCHHHHHHHHHhC-CCCCCHH
Q 047146 476 GLIREALDLIKSM-PLVPDAF 495 (608)
Q Consensus 476 g~~~~A~~~~~~~-~~~p~~~ 495 (608)
|...+|.+-++.. .+.|+..
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 5566666555555 5667643
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.47 E-value=63 Score=34.76 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=14.2
Q ss_pred HHhcCCHHHHHHHHHhCCCCC
Q 047146 472 FGRAGLIREALDLIKSMPLVP 492 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~p 492 (608)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 356788888888888887777
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.46 E-value=11 Score=33.36 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+.-++.+.+.+.+.+|+...+.- +-+| |...-..++..++-.|++++|..-++-+-++.|...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44456667777788887776554 5556 555666677778888888888888887777777764
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.42 E-value=0.76 Score=38.50 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=63.3
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhC
Q 047146 121 PYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKM 200 (608)
Q Consensus 121 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 200 (608)
..++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...+.++. .. ..-...+++.|.+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~----~~---~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT----SN---NYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS----SS---SS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc----cc---ccCHHHHHHHHHhc
Confidence 346777777888888888888888777667788899999999999888888888875 21 13335567777777
Q ss_pred CCchHHHHHHHHH
Q 047146 201 DYPTEAILSFFDM 213 (608)
Q Consensus 201 g~~~~a~~~~~~m 213 (608)
|.++++.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 8777777777765
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.28 E-value=6.9 Score=36.70 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=69.7
Q ss_pred CcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCC---CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh
Q 047146 147 ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQ---AQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223 (608)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 223 (608)
|......+...++..-....+++++...+-.+.... ..++. +-.+.++-+. .-++++++.++..=.+-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444455556666666666677778777765543321 11222 1223344333 345678888888888889999999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHcc
Q 047146 224 ILVIVLSACSKLGDLSLGIKIHRYITDNH 252 (608)
Q Consensus 224 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 252 (608)
|++.+|+.+.+.+++..|.++.-.++...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999988888887777653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.22 E-value=8.6 Score=33.83 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCC-CCchHHHHHHHHHHHhcCChHHHH
Q 047146 203 PTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNL-SPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 203 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
-+.|.+.|-.+...+.--++.....+. .|....+.+++++++..+++...+. .+|+.++.+|++.|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 356777777776665443444444443 4444677888888887777754333 568888888888888888888774
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.61 E-value=3.1 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
.+.-++.+.|+++.|.+..+.+++.+|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 3456789999999999999999999999973
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.53 E-value=0.98 Score=37.82 Aligned_cols=84 Identities=13% Similarity=0.211 Sum_probs=55.6
Q ss_pred HHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChh
Q 047146 228 VLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFK 307 (608)
Q Consensus 228 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 307 (608)
+++.+.+.+.++...++++.+...+... +....+.++..|++.++.+...++++.... .-...++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~--~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKEN--NPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC---SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhccccc--CHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 4566667777777777788777654343 677888888888888777777777774332 33345566666666666
Q ss_pred HHHHHHHHH
Q 047146 308 EALDIFRRM 316 (608)
Q Consensus 308 ~A~~~~~~m 316 (608)
++.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 666666654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.48 E-value=48 Score=32.59 Aligned_cols=52 Identities=10% Similarity=-0.027 Sum_probs=29.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLD 352 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (608)
..+.-+.|+|+...+........ .++...+..+... ..++.+.+....+...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 45667788888855554444322 2333344333332 6677777776666554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=83.35 E-value=43 Score=32.02 Aligned_cols=145 Identities=8% Similarity=0.130 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c----ccHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCHH
Q 047146 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSH--A----GLVEEGCKHFLDMSRVYNLQP--QTEHYGCMVDLFGRAGLIR 479 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 479 (608)
++.+.+++.|.+.|++-+..+|.+....... . ....++..+|+.|.+++.+-- +-..+..++.. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3566778888888888887766554333322 2 235678889999988665533 33344444332 444443
Q ss_pred ----HHHHHHHhC---CCCC-CH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCC-chHHHHHHHHHhCCChHHH
Q 047146 480 ----EALDLIKSM---PLVP-DA-FVWGALLGACKIHAK--VELAEIVMENLVRFEPEGD-GAYILMTNIYSSKNRWKEA 547 (608)
Q Consensus 480 ----~A~~~~~~~---~~~p-~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A 547 (608)
+++..++.+ ++.. |. .....++..+..... ..++..+++.+.+.+-.-. ..|..++-+-.-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 334444444 4433 33 344444433322222 3466677777776654322 2344444333333333244
Q ss_pred HHHHHHH
Q 047146 548 LKLRKKM 554 (608)
Q Consensus 548 ~~~~~~m 554 (608)
..-+.++
T Consensus 237 ~~~i~ev 243 (297)
T PF13170_consen 237 VEEIKEV 243 (297)
T ss_pred HHHHHHH
Confidence 4444444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.73 E-value=29 Score=35.85 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=86.9
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHH
Q 047146 372 KCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFL 450 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 450 (608)
-.|+++.|..++-.++++ .-+.++.-+..+|-.++|+++ .+|.. -| ....+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF----elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF----ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh----hhhhhcCcHHHHHHHHH
Confidence 457777777776666632 233444555566666666644 33322 22 22345677777766554
Q ss_pred HhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 451 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+.-..+-+...+.+..|.
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 43 234557778888888888888887777652 244555566666666555555555554444443
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
-..+|...|+++++.+++.+-
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHhc
Confidence 223456677777777766543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.70 E-value=9.1 Score=33.65 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=47.3
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhCCChHH
Q 047146 473 GRAGLIREALDLIKSMPLVP--DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE----GDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 546 (608)
.+.|+ ++|.+.|-.+.-.| +....-..+..|....+.+++++++-+++++.++ ++..+.+|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 45666666552222 3333333444455577888888888888877432 46788888888888888887
Q ss_pred HH
Q 047146 547 AL 548 (608)
Q Consensus 547 A~ 548 (608)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.53 E-value=19 Score=31.51 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=57.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHH
Q 047146 399 VGLAIHGKAWKALDIFSEMSQVGIEPDE-----VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLF 472 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 472 (608)
.-+..+|++++|..-|.+..+. +++.. ..|..-..++.+.+.++.|+.-..+.++ +.|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 4467788888888888888775 23322 2344444567777888888777666655 3442 22333335577
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC
Q 047146 473 GRAGLIREALDLIKSM-PLVPD 493 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~-~~~p~ 493 (608)
.+...+++|++-++.+ ...|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 7777888888777776 44443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.27 E-value=50 Score=31.31 Aligned_cols=60 Identities=15% Similarity=-0.015 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 393 SYTAMIVGLAIHGKAW---KALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
+...++.+|...+..+ +|..+++.+... .|+ ...+..-+..+.+.++.+++.+.+.+|+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 4555566666655443 455555555443 333 23444455666667777777777777776
|
It is also involved in sporulation []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.27 E-value=6.5 Score=36.46 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+++...+.|...|.+.+|.++.++++.++|-+...+..|...|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344555789999999999999999999999999999999999999999888888888885
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=86 Score=33.91 Aligned_cols=383 Identities=10% Similarity=-0.070 Sum_probs=175.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc
Q 047146 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235 (608)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 235 (608)
..-+..+++.+++..... |.. .++.+...-.....+....|+.++|.+....+-..|- ..+.....++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~-~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLA-FSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHH-hcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHc
Confidence 344455566777777777 332 2234444455666777777887777777766654442 2345566666666655
Q ss_pred CCchHHH--HHHHHHHHccC---------CCCCc-hHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHH--H
Q 047146 236 GDLSLGI--KIHRYITDNHF---------NLSPD-VFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGL--T 301 (608)
Q Consensus 236 ~~~~~a~--~~~~~~~~~~~---------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~ 301 (608)
|.+.... +-+..+...+- .+.++ ......++..+.. ...+...+.... ++...-..++.++ .
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHH
Confidence 5433321 11111111110 00001 1112222222221 222222222221 1111111111121 1
Q ss_pred hcCChhHHHHHHHHHHhCC-CCCChH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047146 302 HRGQFKEALDIFRRMQGLG-LKPDDF--TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378 (608)
Q Consensus 302 ~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (608)
...+.+.|..++....... ..+... ....+.......+..+.+...+....... .+..+...-+..-.+.++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3345577777777664432 222221 12222222222222444444444333222 233334444555557777877
Q ss_pred HHHHHhhcCCC--Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH-HHHHHHhHh
Q 047146 379 AFGVFRSMKCR--DV-YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG-CKHFLDMSR 454 (608)
Q Consensus 379 A~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 454 (608)
+...+..|... +. .-.-=+..++...|+.++|...|+++.. .. +|-.++.+ .+.|..-.. ......-..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~ 403 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDS 403 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhh
Confidence 77777777531 11 1112234455557788888888777633 11 23333221 112211000 000000000
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCchH
Q 047146 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE---PEGDGAY 531 (608)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~ 531 (608)
.....| --.-+..+...|+..+|...+..+-...+......+.......|.++.+..........+ -.-|..|
T Consensus 404 ~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~ 479 (644)
T PRK11619 404 ALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAW 479 (644)
T ss_pred hhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcch
Confidence 000001 112345566788999998888776223455666666677778888888887765443211 1223356
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
...+..+.+.-.++.+.-.---..|.+..|
T Consensus 480 ~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 480 NDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 677777776666666554322223555544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.95 E-value=52 Score=31.25 Aligned_cols=74 Identities=9% Similarity=-0.038 Sum_probs=38.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
+..+-...+.++.+.|+......+.+.+..++ .....+.++...|.. +|+..+.++... .||..+-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 44444555555666665443333334433333 223455666666664 566777776653 446555555555543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.66 E-value=1.1e+02 Score=34.85 Aligned_cols=255 Identities=7% Similarity=-0.102 Sum_probs=124.2
Q ss_pred HHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 047146 280 KVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTD 359 (608)
Q Consensus 280 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (608)
.+...+..+|...-..-+..+.+.+. +++...+.+... .++...-...+.++...+........+..+.+. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 44444456666666666666666554 334444444443 234433334444443332211111222222222 45
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA 439 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 439 (608)
..+-...++++...+.- ....++..+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555543321 12234455566676666666666666554332 12222 245555555556666665
Q ss_pred ccHHH-HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047146 440 GLVEE-GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVME 518 (608)
Q Consensus 440 g~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 518 (608)
+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+..+-..+|..+-...+.++...+.. ++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 54332 2333444433 3566666777777777776655433333331235655555666666666553 3444443
Q ss_pred HHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 519 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.++ .-++..+....+.++.+.+.-..+...+....+
T Consensus 845 ~~L--~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EAL--TDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHh--cCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 333 222334555666666665333445555555443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.36 E-value=21 Score=33.47 Aligned_cols=31 Identities=0% Similarity=0.006 Sum_probs=13.4
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 458 LQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
-.++..+...++..+++.+++.+-.++++..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~ 228 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQC 228 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHh
Confidence 3334444444444444444444444444433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.18 E-value=46 Score=30.15 Aligned_cols=59 Identities=19% Similarity=0.337 Sum_probs=33.0
Q ss_pred HHhcCCHHHHHHHHHhC---CCCCCHHHHHH---HH--HHHHH-cCCHHHHHHHHHHHHhcCCCCCch
Q 047146 472 FGRAGLIREALDLIKSM---PLVPDAFVWGA---LL--GACKI-HAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---l~--~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
-+..+++.+|+++|++. ....+..-|.. ++ ..|.- ..+.-.+...+++..++.|.-..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34566777788887776 22222222221 11 11222 356667778888888888875543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.18 E-value=46 Score=30.15 Aligned_cols=92 Identities=11% Similarity=0.006 Sum_probs=50.0
Q ss_pred HHHHHHhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhcCCCCCch-------H
Q 047146 468 MVDLFGRA-GLIREALDLIKSM-----PLVPDAFVWGALLG---ACKIHAKVELAEIVMENLVRFEPEGDGA-------Y 531 (608)
Q Consensus 468 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~ 531 (608)
+...|-.- .+++.|+..++.. +-..+...-.+++. -....+++.+|+.+++++....-+++.. +
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 4666666666665 22223333334443 3467889999999999998766555421 2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 532 ILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
..-+-.+.-..+.-.+...+++..+..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 2222222233555556666666655443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.4 bits (173), Expect = 5e-13
Identities = 23/196 (11%), Positives = 60/196 (30%), Gaps = 7/196 (3%)
Query: 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366
+ A + + P + L +L L++ + + ++ A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 367 VDMYAKCGRIDQAFGVFRSMKCR-------DVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419
++ A + + + Y A+++G A G + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 420 VGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIR 479
G+ PD +++ L + L+ L+ Q ++ RA +++
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 480 EALDLIKSMPLVPDAF 495
+ + L P
Sbjct: 254 AVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.7 bits (153), Expect = 1e-10
Identities = 38/283 (13%), Positives = 91/283 (32%), Gaps = 23/283 (8%)
Query: 292 SWNSMIAGLTHRGQFKEALDI----FRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347
W +A L K +LD+ + L L+ C L L +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 348 HTYLDKNHINTDGF---IGNALVDMYAKCGRIDQAFGVFRSMKCR----DVYSYTAMIVG 400
+ NA++ +A+ G + V +K D+ SY A +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 401 LAIHGKAWKAL-DIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQ 459
+ + + +MSQ G++ + +LS A +++ ++
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH----------KVK 259
Query: 460 PQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELA-EIVME 518
P + + L+R+ + L + +ELA + +
Sbjct: 260 PTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVV 319
Query: 519 NLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561
++ + + + +++W++AL + + ++++
Sbjct: 320 SVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLER 362
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 3e-09
Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 213 MCQANLRPDGMILVIVLSACSKLGDLSLGIKI-HRYITDNHFNLSPDVFIHNALIDMYLK 271
QA L L+ C L L + + + ++NA++ + +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 272 CGNIPSARKVFDEMPVK----NVVSWNSMIAGLTHRGQFKEAL-DIFRRMQGLGLKPDDF 326
G V + +++S+ + + + + Q + +M GLK
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 327 TLVCVLNSC 335
+L+
Sbjct: 238 FTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.7 bits (140), Expect = 4e-09
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 251 NHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEM-------PVKNVVSWNSMIAGLTHR 303
+ LS A L +P A + + + +N+++ G +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 304 GQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339
G FKE + + ++ GL PD + L
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 6e-05
Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 3/198 (1%)
Query: 91 QCLSNANPLEAIALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQV---HAYSMKTA 147
+ + A + L L K C + L + + H +
Sbjct: 101 EAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR 160
Query: 148 LLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAI 207
L + ++N +M +A G K + + + DL+S+ +Q + D I
Sbjct: 161 KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI 220
Query: 208 LSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALID 267
+ + VL + + + + L P V L D
Sbjct: 221 ERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280
Query: 268 MYLKCGNIPSARKVFDEM 285
+Y K G + +
Sbjct: 281 VYAKDGRVSYPKLHLPLK 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 4e-07
Identities = 49/408 (12%), Positives = 106/408 (25%), Gaps = 108/408 (26%)
Query: 267 DMYLKCGNI-----PSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGL 321
+ + +I + FD K+V + + L+ + + + G
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFD---CKDVQ--DMPKSILSKE-EIDHIIMSKDAVSGT-- 64
Query: 322 KPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFG 381
+L+ + + K+V L N+ F+ + + + + + +
Sbjct: 65 ---LRLFWTLLSKQEEM----VQKFVEEVLRINY----KFLMSPIKTEQRQPSMMTRMYI 113
Query: 382 VFRSMKCRDVYSYTAMIV--------------------GLAIHG-----KAWKALDIFSE 416
R D + V + I G K W ALD+
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 417 MSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG 476
++ ++ + + S ++E K + N +++H ++ R
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDH---SSNIKLRIH 228
Query: 477 LIREAL-DLIKSMPL---------VPDAFVWGALLGACKI-------------HAKVELA 513
I+ L L+KS P V +A W A +CKI A
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 514 EIVMENLVRFEP-EGDGAYILMTNIYSSK------------------------NRWKEAL 548
+ + + P E + + W
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 549 KLRKKMKERKVKK-----TPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591
+ ++ P +++ F L +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 4e-06
Identities = 79/458 (17%), Positives = 135/458 (29%), Gaps = 106/458 (23%)
Query: 5 LTVASGSRYNDINTFQQLSLLHQ-SPRLESSKSVGQLKQFHAFIIKTGSPQHQTQILYDK 63
L + + + + Q LL+Q P S + + + + +
Sbjct: 187 LNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSS------------NIKLRIHSIQAE 233
Query: 64 IISLSRGNEIENLSL------QNPQVYLYNFIIQC--------LSNANPLEAIALYR--- 106
+ L + EN L QN + F + C + L A
Sbjct: 234 LRRLLKSKPYEN-CLLVLLNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 107 EMLIKGLLPNTYTLPYVLKACWQS-QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVC 165
+ L P +LK Q L ++V T
Sbjct: 292 DHHSMTLTP-DEVKSLLLKYLDCRPQDLP--REVL----TTNPR--------------RL 330
Query: 166 GLIKAVHKLF--HFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGM 223
+I + + D + TT+I++ + + P E FD + P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKL--TTIIESSLNVLEPAE-YRKMFDRL-SVFPPSAH 386
Query: 224 ILVIVLSA-------------CSKLGDLSLGIK--------IHRYITDNHFNLSPDVFIH 262
I I+LS +KL SL K I + L + +H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMI------AGLTHR-GQFKEA-LDIFR 314
+++D Y NIP D +P + S I R F+ LD FR
Sbjct: 447 RSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FR 501
Query: 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374
++ ++ D + + L+ K Y+ N + + NA++D K
Sbjct: 502 FLEQ-KIRHDSTAWNASGSILNTLQQLKFYK---PYICDNDPKYERLV-NAILDFLPKIE 556
Query: 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALD 412
+ S K D+ M AI +A K +
Sbjct: 557 EN-----LICS-KYTDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 5e-06
Identities = 95/659 (14%), Positives = 182/659 (27%), Gaps = 193/659 (29%)
Query: 3 SPLTVASGSRYNDI----NTFQQLSLLHQSPRLESSKSV-----GQLKQFHAFI---IKT 50
P ++ S + I + L + + + V L+ + F+ IKT
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 51 GS--PQHQTQILYDKIISLSRGNEI-ENLSLQNPQVYLYNFIIQCLSNANPLEAIALYRE 107
P T++ ++ L N++ ++ Q Y + Q L P + + +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPAKNVLID-- 156
Query: 108 MLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL 167
G + G KT + +V L
Sbjct: 157 ----G-----------VLGS--------G--------KTWVALDVC-------------L 172
Query: 168 IKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANL--RPDGMIL 225
V F+ + W L + E + N R D
Sbjct: 173 SYKVQCKMDFK---------IFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 226 VIVL--SACSKLGDLSLGIKIHRY-----ITDNHFNLSPDVFIHNALIDMYLKCGNIPSA 278
+ + S ++L L +K Y + +V A L C + +
Sbjct: 223 IKLRIHSIQAELRRL---LKSKPYENCLLVLL-------NVQNAKAWNAFNLSCKILLTT 272
Query: 279 R--KVFDEMPVKNV--VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDF-TLVCVLN 333
R +V D + +S + LT E + + L +P D V N
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKY--LDCRPQDLPREVLTTN 326
Query: 334 --SCANIG---------WLELGKWVHTYLDKNHINTDGFIGNALV-----DMYAKCGRID 377
+ I W W H DK + + N L M+
Sbjct: 327 PRRLSIIAESIRDGLATW---DNWKHVNCDKLTTIIESSL-NVLEPAEYRKMF------- 375
Query: 378 QAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437
VF + T ++ + W + M V++
Sbjct: 376 DRLSVFPP----SAHIPTILLSLI------WFDVIKSDVMV-------------VVNKLH 412
Query: 438 HAGLVEEGCK------HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLV 491
LVE+ K + + L+ + + +VD + I + D +P
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN----IPKTFDSDDLIPPY 468
Query: 492 PDAFVWGALLGACKIH-AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL 550
D + + + +G H +E E R L ++ R+ L
Sbjct: 469 LDQY-FYSHIGH---HLKNIEHPE-------RMT--------LFRMVFLDF-RF-----L 503
Query: 551 RKKMKERKVKKTPGCSLVEVYGEFYEFRKG-DKSHPKTLEIYKLLDEIMHQSKNHGYIL 608
+K++ S++ + ++ + P E +L++ I+ L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYE--RLVNAILDFLPKIEENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 42/263 (15%), Positives = 81/263 (30%), Gaps = 59/263 (22%)
Query: 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI-DQAFGVFRSMKCRDVY------SY 394
E G+ + Y D + D F+ N D C + D + + + S
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDN--FD----CKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 395 TAMIVGLAIHGKAWKALDIFSE----------MSQVGIEPDEVTFVGVLSACSHAGL--- 441
T + + K + + F E MS + E + + + + L
Sbjct: 64 TLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 442 VEEGCKHFLDMSR----------VYNLQPQTEHYGCMVDLFGRAG-----LIREALDLIK 486
+ K+ + SR + L+P V + G G + + K
Sbjct: 123 NQVFAKYNV--SRLQPYLKLRQALLELRPAK-----NVLIDGVLGSGKTWVALDVCLSYK 175
Query: 487 SMPLVPDAFVWGALLGACKIHAKVELAEIVMENL-VRFEPEGDGAYILMTNIYSSKNRWK 545
+ W L C E +++ L + +P +NI + +
Sbjct: 176 VQCKMDFKIFW-LNLKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 546 EALKLRKKMKERKVKKTPGCSLV 568
+LR+ +K + + C LV
Sbjct: 232 A--ELRRLLKSKPYEN---CLLV 249
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 608 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.08 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.98 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.69 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.58 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.55 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.52 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.52 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.49 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.49 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.45 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.45 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.44 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.44 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.41 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.4 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.34 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.33 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.29 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.26 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.24 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.23 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.09 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.07 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.06 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.05 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.97 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.96 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.94 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.94 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.94 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.86 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.85 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.82 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.78 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.78 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.64 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.58 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.51 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.41 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.39 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.36 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.35 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.35 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.28 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.19 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.16 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.16 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.13 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.94 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.81 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.68 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.63 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.6 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.56 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.51 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.36 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.34 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.32 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.03 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.76 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.63 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.46 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.45 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.82 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.54 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.19 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.03 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.89 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.78 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.47 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.82 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.01 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.33 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.24 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.14 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.95 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.84 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.78 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.61 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.79 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.53 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.74 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.67 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.4 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 84.31 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.18 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.12 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 83.87 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.53 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.13 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.95 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.63 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.5 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.42 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.05 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.85 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 81.73 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 81.29 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 80.78 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.21 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=370.11 Aligned_cols=523 Identities=9% Similarity=-0.033 Sum_probs=415.3
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHccCCchHHHh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHC
Q 047146 36 SVGQLKQFHAFIIKTGSPQHQTQILYDKIISLSRGNEIENL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIK 111 (608)
Q Consensus 36 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~ 111 (608)
.+...+++|......++..++... ....++++|.+..++. .++.+++..|+.++..+.+.|++++ +.+|++|..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~- 112 (597)
T 2xpi_A 35 SMGALNANNSNSQLSTLTISPMTY-LANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD- 112 (597)
T ss_dssp ----------CTTSCGGGGCGGGG-GC---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred cHHHHhhccccccccceeechhhh-hcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh-
Confidence 344445555555444443333222 2233556666666655 5666889999999999999999999 999999985
Q ss_pred CCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC----------
Q 047146 112 GLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP---------- 181 (608)
Q Consensus 112 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------- 181 (608)
..|+..++..+..+|...|++++|..+++.+... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 113 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 113 -ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp -HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred -hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 4678899999999999999999999999987653 578899999999999999999999999963221
Q ss_pred -----CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHH--HHH-HHHHHHcc
Q 047146 182 -----QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLG--IKI-HRYITDNH 252 (608)
Q Consensus 182 -----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~ 252 (608)
+...+..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+...+..+.+ ..+ +..+...+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 112357899999999999999999999999998854 44 34455554444333222211 111 34444433
Q ss_pred CCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHH
Q 047146 253 FNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPV--KNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVC 330 (608)
Q Consensus 253 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 330 (608)
... ...+++.++..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..
T Consensus 268 ~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 344 (597)
T 2xpi_A 268 AAF--LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPL 344 (597)
T ss_dssp HHH--HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHH
T ss_pred HHH--HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHH
Confidence 222 556777889999999999999999999986 789999999999999999999999999999865 457788999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh
Q 047146 331 VLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKA 407 (608)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 407 (608)
++.++...|++++|..++..+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999998654 5678899999999999999999999999875 35688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047146 408 WKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKS 487 (608)
Q Consensus 408 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (608)
++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|++
T Consensus 424 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 424 DQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999853 347789999999999999999999999999873 344688999999999999999999999998
Q ss_pred C-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 488 M-------PLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 488 ~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+ +..|+ ..+|..++.+|.+.|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~- 579 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI- 579 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 8 44777 7899999999999999999999999999999999999999999999999999999999999853
Q ss_pred CccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHH
Q 047146 559 VKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIM 598 (608)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 598 (608)
+|+++..+..|.+++
T Consensus 580 -------------------------~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 580 -------------------------SPNEIMASDLLKRAL 594 (597)
T ss_dssp -------------------------CTTCHHHHHHHHHTT
T ss_pred -------------------------CCCChHHHHHHHHHH
Confidence 466777777776654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=332.65 Aligned_cols=477 Identities=9% Similarity=0.001 Sum_probs=404.1
Q ss_pred CchhHHH-HHHHHHccCCchHHHh---hC--CCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHH
Q 047146 54 QHQTQIL-YDKIISLSRGNEIENL---SL--QNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKA 126 (608)
Q Consensus 54 ~~~~~~~-l~~~~~~~g~~~~A~~---~~--~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~ 126 (608)
++...++ ++..|.+.|++++|.. .+ ..|+..+|+.++.+|.+.|++++ +.+|+.+.. ..++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence 5667777 9999999999999998 11 24677899999999999999999 999999864 36788899999999
Q ss_pred HhccCCcHHHHHHHHHHHHh---------------CcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHH
Q 047146 127 CWQSQSLRVGQQVHAYSMKT---------------ALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWT 191 (608)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 191 (608)
+.+.|++++|..+++.+... +.+.+..+|+.++.+|.+.|++++|.++|++|.+..+ .+...|.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHH
Confidence 99999999999999853221 2234688999999999999999999999999765432 2445566
Q ss_pred HHHHHHHhCCCchHHHH--H-HHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAIL--S-FFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDM 268 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~--~-~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 268 (608)
.+...+...+..+.+.. + +..+...+..++..+|..++..|.+.|++++|.++++.+.+. + ++..+++.++.+
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~~~l~~~ 314 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--E--KSSDLLLCKADT 314 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--G--GCHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--C--chHHHHHHHHHH
Confidence 66555544433222221 1 455555555556667788888999999999999999998876 2 389999999999
Q ss_pred HHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHH
Q 047146 269 YLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345 (608)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 345 (608)
|.+.|++++|.++|+++. +.+..+|+.++.++.+.|++++|..+++++.... +.+..++..+...|.+.|++++|.
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999986 4578899999999999999999999999998653 567889999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047146 346 WVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422 (608)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 422 (608)
++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999998764 4467799999999999999999999999875 3478999999999999999999999999999853
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 047146 423 EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY---NLQPQ--TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAF 495 (608)
Q Consensus 423 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 495 (608)
+.+..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 3467899999999999999999999999998732 56787 789999999999999999999999998 4345 889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
+|..+..+|...|++++|.+.++++.+++|+++..+..++.+|..
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-26 Score=230.35 Aligned_cols=348 Identities=15% Similarity=0.112 Sum_probs=206.6
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCC
Q 047146 196 AYVKMDYPTEAILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274 (608)
Q Consensus 196 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 274 (608)
.+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...++...+..+. +..++..+...|.+.|+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCC
Confidence 344555555555555555443 222 233344444455555555555555555554322 45555555666666666
Q ss_pred hHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hHHHHHHHHHHhccCChHHHHHHHHH
Q 047146 275 IPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-DFTLVCVLNSCANIGWLELGKWVHTY 350 (608)
Q Consensus 275 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 350 (608)
+++|.+.|+++. +.+..+|..+..++...|++++|++.|+++.+. .|+ ...+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666555543 223345555666666666666666666665553 233 23344444555555666666666665
Q ss_pred HHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CH
Q 047146 351 LDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DE 426 (608)
Q Consensus 351 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~ 426 (608)
+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..+++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 55543 23345556666666666666666666665542 23455666666666677777777777666653 44 34
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PL-VPDAFVWGALLGA 503 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 503 (608)
.++..+..++...|++++|.+.|+++.+ ..| +...|..++.++.+.|++++|.+.++++ .. +++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 5666666667777777777777776665 223 3556666777777777777777777666 22 2356666667777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+...|++++|...++++.+..|++...+..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777777777777777766777777777777777777777777653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=233.07 Aligned_cols=374 Identities=13% Similarity=0.078 Sum_probs=249.3
Q ss_pred HHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchH
Q 047146 126 ACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTE 205 (608)
Q Consensus 126 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 205 (608)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++..... .+.+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHH
Confidence 3445566666666665555542 122334444455555556666665555543321 22344455555555555555555
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHcc
Q 047146 206 AILSFFDMCQANLRPD-GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDE 284 (608)
Q Consensus 206 a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (608)
|++.|+++.+. .|+ ..++..+..++...|++++|.+.++.+.+..+. +..++..+...|...|++++|.+.|+
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~- 159 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYL- 159 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHH-
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHH-
Confidence 55555555542 222 234555555555555555555555555554322 33444444445555555555555554
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047146 285 MPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364 (608)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (608)
++.+.. +.+..++..+...+...|+++.|...++.+.+.+ +.+...+.
T Consensus 160 ------------------------------~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T 1w3b_A 160 ------------------------------KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp ------------------------------HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ------------------------------HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 444331 1223344444444444444444444444444433 22345556
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccc
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAG 440 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 440 (608)
.+..++...|++++|...|++.. ..+..+|..+...|...|++++|+..|+++.+. .| +..++..+..++.+.|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Confidence 67777888888888888887654 235678888999999999999999999999984 55 4568999999999999
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVME 518 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 518 (608)
++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999883 3557889999999999999999999999998 5556 57889999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 519 NLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 519 ~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
++.+..|+++..|..++.++.+.|+
T Consensus 364 ~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=245.12 Aligned_cols=182 Identities=15% Similarity=0.206 Sum_probs=132.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC---------hHHHHHHHHHHHHcCCCCchhH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW---------LELGKWVHTYLDKNHINTDGFI 362 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 362 (608)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++++.|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666677777777777777777777777777777777777777765443 5667777777777777777777
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMK----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH 438 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 438 (608)
|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 7777777777777777777777765 367777777777777777777777777777777777777777777777777
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
.|++++|.+++++|.+ .+..|+..+|+.++..|.+
T Consensus 188 ~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 7777777777777776 5777777777777777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=245.00 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=148.8
Q ss_pred chHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCC---------cHHHHHHHHHHHHhCcCCcHh
Q 047146 84 YLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQS---------LRVGQQVHAYSMKTALLSNVY 153 (608)
Q Consensus 84 ~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 153 (608)
..++.+|++|++.|+.++ +++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 357777888888888887 8888888888888888888888888876543 567788888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 047146 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACS 233 (608)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 233 (608)
+|++||++|++.|++++|.++|++|...+..||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888887777888888888888888888888888888888888888888888888888888
Q ss_pred ccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhc
Q 047146 234 KLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKC 272 (608)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 272 (608)
+.|++++|.+++++|.+.+. .|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~--~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVR--QVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTS--SBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHHhcC
Confidence 88888888888888887743 44778888777777653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-23 Score=213.01 Aligned_cols=396 Identities=9% Similarity=-0.029 Sum_probs=317.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 047146 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSA 231 (608)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 231 (608)
...+..+...+.+.|++++|...|+++.... |+..+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4566777888999999999999999876544 688899999999999999999999999998864 3356788999999
Q ss_pred hhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHH-----------------------------
Q 047146 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVF----------------------------- 282 (608)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~----------------------------- 282 (608)
+...|++++|...++.+.+.++. +......++..+.+......+.+.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF---NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC---CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 99999999999999999988643 3333334444433322222222211
Q ss_pred ---------ccCC---------CC-ChhhHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCCCC--------ChHH
Q 047146 283 ---------DEMP---------VK-NVVSWNSMIAGLTH---RGQFKEALDIFRRMQG-----LGLKP--------DDFT 327 (608)
Q Consensus 283 ---------~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t 327 (608)
.... .| +...+......+.. .|++++|+..|+++.+ ..-.| +..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 1111 01 13344444454554 8999999999999988 32122 2456
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 047146 328 LVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIH 404 (608)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 404 (608)
+..+...+...|+++.|...+..+.+.... ...+..+..+|...|++++|...++.+.. .+...|..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 777888899999999999999999887644 88888999999999999999999998753 4678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999852 225568888999999999999999999999873 233577899999999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 485 IKSM----PLVPD----AFVWGALLGACKI---HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 485 ~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
++++ +..++ ...|..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|...+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9987 22232 4488889999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 047146 554 MKERK 558 (608)
Q Consensus 554 m~~~~ 558 (608)
..+.+
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-22 Score=201.73 Aligned_cols=337 Identities=11% Similarity=0.063 Sum_probs=249.6
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.++. +..++..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD---FTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---cHHHHHH
Confidence 456667778888888888888888888887642 335667777778888888888888888888877543 5667777
Q ss_pred HHHHHHhcCChHHHHHHHccCCC--C-Ch---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 047146 265 LIDMYLKCGNIPSARKVFDEMPV--K-NV---VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 338 (608)
+..+|.+.|++++|.+.|+++.. | +. ..|..++..+...+ +..+...+...
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~ 156 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGS 156 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHc
Confidence 77777777777777777776653 2 22 45555544311111 11122234455
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 047146 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
|+++.|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+
T Consensus 157 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655543 3355667778888888888888888888775 3467888889999999999999999999
Q ss_pred HHHHCCCCCCHH-HHHHH------------HHHHhccccHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCC
Q 047146 416 EMSQVGIEPDEV-TFVGV------------LSACSHAGLVEEGCKHFLDMSRVYNLQPQ-----TEHYGCMVDLFGRAGL 477 (608)
Q Consensus 416 ~m~~~g~~p~~~-~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~ 477 (608)
++... .|+.. .+..+ ...|.+.|++++|...|+.+.+. .|+ ...+..++.++.+.|+
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCC
Confidence 98874 55443 44433 78899999999999999999873 344 4578899999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH------------HHHHhCC-
Q 047146 478 IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT------------NIYSSKN- 542 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g- 542 (608)
+++|++.++++ ...| +...|..+..+|...|++++|...++++.++.|+++..+..++ +.|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999987 4445 7889999999999999999999999999999999999999888 4455556
Q ss_pred ----ChHHHHHHHHHH
Q 047146 543 ----RWKEALKLRKKM 554 (608)
Q Consensus 543 ----~~~~A~~~~~~m 554 (608)
+.+++.+.++++
T Consensus 391 ~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKL 406 (450)
T ss_dssp STTCCTTHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHH
Confidence 556667777763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-22 Score=207.56 Aligned_cols=442 Identities=10% Similarity=-0.064 Sum_probs=294.4
Q ss_pred hHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHH
Q 047146 85 LYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYA 163 (608)
Q Consensus 85 ~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (608)
.|......+.+.|++++ +..|+++.+.. ||..++..+..++...|++++|...++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45555566677777777 77777777654 566677777777777777777777777777654 234556777777777
Q ss_pred hcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHH
Q 047146 164 VCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIK 243 (608)
Q Consensus 164 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 243 (608)
+.|++++|...|+.+....+ ++......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 77777777777776554332 23333334443333322222222222222111111111111100000001111111111
Q ss_pred HHHHHHHccCC-------CCCchHHHHHHHHHHHh---cCChHHHHHHHccCCC----------------C-ChhhHHHH
Q 047146 244 IHRYITDNHFN-------LSPDVFIHNALIDMYLK---CGNIPSARKVFDEMPV----------------K-NVVSWNSM 296 (608)
Q Consensus 244 ~~~~~~~~~~~-------~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l 296 (608)
+...+...... ...+...+..+...+.. .|++++|...|+++.. | +..+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11111111000 01124444445554554 7888888888876543 1 24567778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 376 (608)
...+...|++++|...|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+..+|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 888889999999999999888764 447778888888889999999999998887764 34566788889999999999
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhH
Q 047146 377 DQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 377 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
++|...|++.. ..+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998764 3466788899999999999999999999998752 3355688888999999999999999999987
Q ss_pred hhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 454 RVYNLQPQ----TEHYGCMVDLFGR---AGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 454 ~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+...-.++ ...+..+...+.. .|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 73222232 3488999999999 99999999999987 3344 67788899999999999999999999999999
Q ss_pred CCCCchHHHH
Q 047146 525 PEGDGAYILM 534 (608)
Q Consensus 525 p~~~~~~~~l 534 (608)
|+++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9988776655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-22 Score=207.16 Aligned_cols=424 Identities=9% Similarity=0.005 Sum_probs=255.0
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHh
Q 047146 120 LPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199 (608)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 199 (608)
+...-..+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|+...... +.+..+|..+...+..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 3344444555555555555555555543 1244555555555555666666666555543322 2244455555555666
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHH
Q 047146 200 MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSAR 279 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 279 (608)
.|++++|+..|+.+. ..|+... ..+..+...+....+...++.+....++..+........+..+....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 666666666654221 1121111 11122222333345555555554432111111111233344455666667776
Q ss_pred HHHccCCCCChh---hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC--------hHHHHHHHHHHhccCC
Q 047146 280 KVFDEMPVKNVV---SWNSMIAGLTH--------RGQFKEALDIFRRMQGLGLKPD--------DFTLVCVLNSCANIGW 340 (608)
Q Consensus 280 ~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~~ 340 (608)
..+......+.. .+..+...+.. .|++++|+.+++++.+. .|+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 666666544332 23333322222 24677788888777764 333 1235555566677778
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 047146 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEM 417 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 417 (608)
++.|...+..+.+.. |+...+..+...|...|++++|.+.|++.. ..+..+|..+...+...|++++|+..++++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888888888777764 336667777778888888888888887664 245677788888888888888888888888
Q ss_pred HHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----C---
Q 047146 418 SQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM----P--- 489 (608)
Q Consensus 418 ~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~--- 489 (608)
.+. .| +...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ +
T Consensus 337 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 337 QSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 774 34 3457777778888888888888888888763 2334667778888888888888888888776 1
Q ss_pred -CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 490 -LVPDAFVWGALLGACKIH----------AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 490 -~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.......+......+... |++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111222344444566666 888888888888888888888888888888888888888888888887644
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=198.92 Aligned_cols=305 Identities=13% Similarity=0.080 Sum_probs=237.9
Q ss_pred CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHH
Q 047146 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMI 297 (608)
Q Consensus 221 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 297 (608)
+...+..+...+...|++++|..+|+.+++..+. +..++..+..+|...|++++|...|+++. +.+..+|..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4456667777777777777777777777766433 56677777777777777777777777664 33456677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCh----HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 298 AGLTHRGQFKEALDIFRRMQGLGLKPDD----FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 298 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
.+|...|++++|...|+++.+. .|+. ..+..+...+... .+..+...|.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHc
Confidence 7777777777777777777664 3433 3333333322111 123345668889
Q ss_pred CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 047146 374 GRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450 (608)
Q Consensus 374 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 450 (608)
|++++|...|+.+. ..+...+..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999875 3577889999999999999999999999998852 3467799999999999999999999999
Q ss_pred HhHhhcCCCC-ChhHHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHH
Q 047146 451 DMSRVYNLQP-QTEHYGCM------------VDLFGRAGLIREALDLIKSM-PLVPD-----AFVWGALLGACKIHAKVE 511 (608)
Q Consensus 451 ~~~~~~~~~p-~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~ 511 (608)
.+.+. .| +...+..+ +..+.+.|++++|.+.++++ ...|+ ...+..+...+.+.|+++
T Consensus 236 ~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 99873 44 34455444 88999999999999999998 44554 447888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+|...++++.+..|+++.+|..++.+|...|++++|...++++.+.
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999863
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-20 Score=193.99 Aligned_cols=431 Identities=11% Similarity=0.007 Sum_probs=317.2
Q ss_pred cchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHH
Q 047146 83 VYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRL 161 (608)
Q Consensus 83 ~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 161 (608)
...|..+...+.+.|++++ +..|+++.+.. +.+..++..+..++...|++++|...++.+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3567777788899999999 99999998764 2366788888888999999999999999998875 3457788899999
Q ss_pred HHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC------CCCCCHhHHHHHHHHhhcc
Q 047146 162 YAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA------NLRPDGMILVIVLSACSKL 235 (608)
Q Consensus 162 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~ 235 (608)
|...|++++|...|+.+.. .+ + ..+..+..+...+...+|+..++++... ...|+...... +...
T Consensus 103 ~~~~g~~~~A~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL-NG--D--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHT
T ss_pred HHHcCCHHHHHHHHHHHhc-CC--C--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHh
Confidence 9999999999999964322 22 2 2223344555556667899999888543 12344443333 3333
Q ss_pred CCchHHHHHHHHHHHccCCCCCc-hHHHHHHHHHHHh--------cCChHHHHHHHccCCC--CC--------hhhHHHH
Q 047146 236 GDLSLGIKIHRYITDNHFNLSPD-VFIHNALIDMYLK--------CGNIPSARKVFDEMPV--KN--------VVSWNSM 296 (608)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~l 296 (608)
.+.+.+...+.... ...|. ......+...+.. .|++++|..+|+++.. |+ ..+|..+
T Consensus 174 ~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 174 FDSHLEVSSVNTSS----NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp SCHHHHHHTSCCCC----SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcc----ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 44443333222211 11111 1233333333332 2478889988888763 22 2246667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRI 376 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 376 (608)
...+...|++++|+..|++..+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+..+|...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 77888999999999999999886 5667888888899999999999999999998875 34677889999999999999
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhH
Q 047146 377 DQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 377 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
++|...|++.. ..+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++.+.
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999875 3456889999999999999999999999999852 3345688889999999999999999999987
Q ss_pred hhcCCCC----ChhHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 047146 454 RVYNLQP----QTEHYGCMVDLFGRA----------GLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVM 517 (608)
Q Consensus 454 ~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 517 (608)
+...-.+ ....+..+...+.+. |++++|...++++ ...| +...+..+...+...|++++|...+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7321111 123345556778888 9999999999988 4344 6788999999999999999999999
Q ss_pred HHHHhcCCCCCchHH
Q 047146 518 ENLVRFEPEGDGAYI 532 (608)
Q Consensus 518 ~~~~~~~p~~~~~~~ 532 (608)
+++.++.|+++....
T Consensus 486 ~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 486 EDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHC--CHHHHH
T ss_pred HHHHHhCCCcHHHHH
Confidence 999999999875543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-19 Score=174.94 Aligned_cols=325 Identities=13% Similarity=0.065 Sum_probs=245.8
Q ss_pred CHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHH
Q 047146 221 DGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMI 297 (608)
Q Consensus 221 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 297 (608)
|...+..+...+...|++++|...++.+++..+. +..++..+...|...|++++|...|++.. +.+...|..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3456777778888888888888888888887544 67788888888888888888888888765 33566788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC---Ch-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 298 AGLTHRGQFKEALDIFRRMQGLGLKP---DD-FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 298 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
..+...|++++|...|++..+. .| +. ..+..+.... . ...+..+...+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHc
Confidence 8888888888888888888775 34 22 2222221110 0 01123345677788
Q ss_pred CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 047146 374 GRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450 (608)
Q Consensus 374 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 450 (608)
|++++|.+.|+++. ..+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++
T Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888765 3466778888888888888888888888888742 3356688888888888888999888888
Q ss_pred HhHhhcCCCC-ChhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHH
Q 047146 451 DMSRVYNLQP-QTEHYG------------CMVDLFGRAGLIREALDLIKSM-PLVPD-A----FVWGALLGACKIHAKVE 511 (608)
Q Consensus 451 ~~~~~~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~ 511 (608)
.+.+. .| +...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|+++
T Consensus 213 ~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 88763 23 233332 3367788999999999999987 33443 3 23445678899999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHH
Q 047146 512 LAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIY 591 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 591 (608)
+|...++++.+..|+++..+..++.+|.+.|++++|.+.+++..+ ..|+++.++
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~ 343 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHH
Confidence 999999999999999999999999999999999999999999974 357888888
Q ss_pred HHHHHHHHHHhh
Q 047146 592 KLLDEIMHQSKN 603 (608)
Q Consensus 592 ~~l~~~~~~~~~ 603 (608)
..|.++...+++
T Consensus 344 ~~l~~~~~~~~~ 355 (359)
T 3ieg_A 344 EGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-18 Score=169.36 Aligned_cols=325 Identities=9% Similarity=0.011 Sum_probs=235.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHH
Q 047146 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265 (608)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 265 (608)
|+..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|+++.|...++.+.+..+. +...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchHHHHH
Confidence 45567888999999999999999999998753 345778889999999999999999999999998544 67899999
Q ss_pred HHHHHhcCChHHHHHHHccCCCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 047146 266 IDMYLKCGNIPSARKVFDEMPVKN------VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339 (608)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 339 (608)
..+|...|++++|...|++....+ ...+..+...+. ...+..+...+...|
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 999999999999999999886432 333443311100 001112223334444
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSE 416 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~ 416 (608)
+++.|...+..+.+.. +.+..++..+..+|...|++++|...+++... .+...|..+...+...|++++|...+++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444444332 23344556666777777777777777776542 3566777777788888888888888888
Q ss_pred HHHCCCCCCH-HHHH------------HHHHHHhccccHHHHHHHHHHhHhhcCCCCCh--hHHHHHHHHHHhcCCHHHH
Q 047146 417 MSQVGIEPDE-VTFV------------GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT--EHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 417 m~~~g~~p~~-~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 481 (608)
..+. .|+. ..+. .+...+...|++++|...++.+.+...-.+.. ..+..+...+.+.|++++|
T Consensus 214 a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 7764 3433 2222 23556888899999999999988732111111 3355678899999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 482 LDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 482 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
.+.+++. ...| +..+|..+...+...|++++|...++++.+..|+++..+..+..++..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999988 4445 788999999999999999999999999999999998888887776554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-18 Score=163.96 Aligned_cols=184 Identities=14% Similarity=0.058 Sum_probs=127.0
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
..+..+..+|...|++++|...|++.. ..+...+..+...|...|++++|...+++..+.. +.+...+..+...+.
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 334455555555556666555555543 1234555666667777777777777777776642 224557777777777
Q ss_pred ccccHHHHHHHHHHhHhhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 047146 438 HAGLVEEGCKHFLDMSRVYN-------LQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHA 508 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 508 (608)
..|++++|...++.+.+... .+.....+..+..+|.+.|++++|.+.+++. ...| +...|..+...+...|
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc
Confidence 77888888777777766221 1234567888888888888888888888877 3333 5677888888888899
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhCCChH
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIY-SSKNRWK 545 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 545 (608)
++++|...++++.+..|+++..+..++.++ ...|+.+
T Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998888888888888 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-16 Score=162.82 Aligned_cols=413 Identities=9% Similarity=-0.020 Sum_probs=258.6
Q ss_pred CceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHH
Q 047146 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQ 195 (608)
Q Consensus 116 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 195 (608)
|...|..++.. .+.|+++.|..+++.+++. .+.+...|..++..+.+.|++++|..+|++..... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 34455555653 4556666666666666653 22345566666666666666666666666655433 34445555553
Q ss_pred HH-HhCCCchHHHH----HHHHHHH-CCCCC-CHhHHHHHHHHhhc---------cCCchHHHHHHHHHHHccCCCCCch
Q 047146 196 AY-VKMDYPTEAIL----SFFDMCQ-ANLRP-DGMILVIVLSACSK---------LGDLSLGIKIHRYITDNHFNLSPDV 259 (608)
Q Consensus 196 ~~-~~~g~~~~a~~----~~~~m~~-~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~p~~ 259 (608)
.. ...|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+..++. +..+..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~~~ 165 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMINIE 165 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTTHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhhHH
Confidence 22 23455555544 4444432 23333 23344444444332 45555666666665552 111112
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH------HhCC---CCCCh-----
Q 047146 260 FIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRM------QGLG---LKPDD----- 325 (608)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~~----- 325 (608)
..|..........|. ..+..+ +. ...+++..|..++.++ .+.. ++|+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~---------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKM---------------IE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHH---------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHH---------------HH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 222222221111110 001111 10 1234566666666552 1111 23431
Q ss_pred ---HHHHHHHHHHhc----cCCh----HHHHHHHHHHHHcCCCCchhHHHHHHHHhHh-------cCCHH-------HHH
Q 047146 326 ---FTLVCVLNSCAN----IGWL----ELGKWVHTYLDKNHINTDGFIGNALVDMYAK-------CGRID-------QAF 380 (608)
Q Consensus 326 ---~t~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~ 380 (608)
..|...+..... .++. ..+..+++.++... +.++.+|..++..+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 233333322221 1232 36667788777653 4567788888888775 68887 899
Q ss_pred HHHhhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 381 GVFRSMKC---R-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE--VTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 381 ~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.++|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99997763 3 578899999999999999999999999998 46653 4788888888899999999999999987
Q ss_pred hcCCCC-ChhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-
Q 047146 455 VYNLQP-QTEHYGCMVDL-FGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG- 529 (608)
Q Consensus 455 ~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~- 529 (608)
. .| +...|...+.. +...|+.++|..+|+.. ...| +...|..++..+.+.|+.++|..+++++++..|.++.
T Consensus 385 ~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 385 D---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp C---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred c---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 2 33 33333333222 34689999999999987 4345 6789999999999999999999999999998877665
Q ss_pred ---hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 530 ---AYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 530 ---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
.|...+......|+.+.+.++.+++.+.-
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888888899999999999999987644
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-17 Score=160.03 Aligned_cols=279 Identities=10% Similarity=-0.036 Sum_probs=223.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|+++.|..++..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44556666666777777777777777776643 3334455556666677777777777777776654 345666778888
Q ss_pred HhHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHH
Q 047146 369 MYAKCG-RIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEE 444 (608)
Q Consensus 369 ~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 444 (608)
.|...| ++++|...|++... .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 899999 99999999987653 356789999999999999999999999999853 2245677778999999999999
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCCHHHH
Q 047146 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL----------VPDAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~~a 513 (608)
|.+.++.+.+ ..+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...+...|++++|
T Consensus 178 A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999987 23446788999999999999999999999887 11 23467899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHH
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKL 593 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 593 (608)
...++++.+..|+++..+..++.+|.+.|++++|.+.+++..+ ..|+++..+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~ 309 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--------------------------LRRDDTFSVTM 309 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--------------------------TCSCCHHHHHH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--------------------------cCCCchHHHHH
Confidence 9999999999999999999999999999999999999998763 34667777777
Q ss_pred HHHHH
Q 047146 594 LDEIM 598 (608)
Q Consensus 594 l~~~~ 598 (608)
+....
T Consensus 310 l~~~~ 314 (330)
T 3hym_B 310 LGHCI 314 (330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-17 Score=163.35 Aligned_cols=355 Identities=11% Similarity=0.051 Sum_probs=160.9
Q ss_pred HhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHH
Q 047146 163 AVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGI 242 (608)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 242 (608)
-+.|++++|.+.++++ . ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~----~--~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC----N--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC----C--ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3678899999999884 2 3348999999999999999999999653 57778999999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047146 243 KIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK 322 (608)
Q Consensus 243 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 322 (608)
..++..++. .|++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 82 KYLQMARKK----ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp -------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHh----CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 988877764 22677888999999999999998888764 67779999999999999999999999877
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLA 402 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 402 (608)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ 218 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence 36888999999999999999888877 368888999999999999999987777655 44444556888999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cccHHHHHHHHHHhHhhcCCCC------ChhHHHHHHHHHHh
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH--AGLVEEGCKHFLDMSRVYNLQP------QTEHYGCMVDLFGR 474 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~ 474 (608)
+.|++++|+.+++...... +-....|+-+.-++++ -+++.+..+.|..- .+++| +...|..++-.|..
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887642 2233456655555554 45566665555432 35555 46779999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----------chHHHHHHHHHhCCC
Q 047146 475 AGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD----------GAYILMTNIYSSKNR 543 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----------~~~~~l~~~~~~~g~ 543 (608)
.++++.|...+-+- +..-+...|.-++ .+..+.+---+...-.++..|... --....+..+.+.|.
T Consensus 295 ~~e~d~A~~tm~~h~~~a~~~~~f~~~~---~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~ 371 (449)
T 1b89_A 295 YEEYDNAIITMMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ 371 (449)
T ss_dssp TTCHHHHHHHHHHSTTTTCCHHHHHHHH---HHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTC
T ss_pred hchHHHHHHHHHhCChhhhhhHHHHHHH---hchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCC
Confidence 99999998866555 2222333333332 333333322222222222222210 012344455556666
Q ss_pred hHHHHHHHHHHHhCCC
Q 047146 544 WKEALKLRKKMKERKV 559 (608)
Q Consensus 544 ~~~A~~~~~~m~~~~~ 559 (608)
+.-+..+++.+...+.
T Consensus 372 l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 372 LPLVKPYLRSVQNHNN 387 (449)
T ss_dssp TTTTHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHhhH
Confidence 6666666655555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-16 Score=160.79 Aligned_cols=366 Identities=9% Similarity=-0.034 Sum_probs=276.7
Q ss_pred cHhHHHHHHHHHHh----cCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCH
Q 047146 151 NVYVFNTLMRLYAV----CGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK----MDYPTEAILSFFDMCQANLRPDG 222 (608)
Q Consensus 151 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~ 222 (608)
+......|-..|.. .+++++|...|+...+. .+...+..|...|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55566666666666 67788888877764332 355667777777777 778888888888877654 45
Q ss_pred hHHHHHHHHhhc----cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh----cCChHHHHHHHccCC-CCChhhH
Q 047146 223 MILVIVLSACSK----LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK----CGNIPSARKVFDEMP-VKNVVSW 293 (608)
Q Consensus 223 ~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~ 293 (608)
..+..+...+.. .+++++|...++...+.+ +...+..|..+|.. .++.++|.+.|++.. ..+...+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 556666666666 678888888888887763 56677777777776 678888888887765 3456677
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchhHHHH
Q 047146 294 NSMIAGLTH----RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN----IGWLELGKWVHTYLDKNHINTDGFIGNA 365 (608)
Q Consensus 294 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (608)
..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|..++....+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 777777777 788888888888887764 45566666666664 678888888888887764 3455666
Q ss_pred HHHHhHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 366 LVDMYAK----CGRIDQAFGVFRSMKC-RDVYSYTAMIVGLAIH-----GKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 366 li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
+..+|.. .++.++|.+.|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 7777777 8899999999988764 4667788888888887 89999999999998864 44566677777
Q ss_pred Hhccc---cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 047146 436 CSHAG---LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIREALDLIKSMPLVPDAFVWGALLGACKI-- 506 (608)
Q Consensus 436 ~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-- 506 (608)
+...| +.++|.++|++..+. .+...+..|..+|.. .+++++|.+.|++.-...++..+..+...|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 76655 889999999999872 467788889999988 89999999999988223367788888888887
Q ss_pred --cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 047146 507 --HAKVELAEIVMENLVRFEPE---GDGAYILMTNIYSS 540 (608)
Q Consensus 507 --~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 540 (608)
.++.++|...++++.+.+|+ ++.....++.++..
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999854 66666666666554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-15 Score=163.99 Aligned_cols=417 Identities=11% Similarity=0.089 Sum_probs=305.2
Q ss_pred CCCCcchHHHHHHHHHcCCCccHHHHHHHHHHCCC--CCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhC--cCCcHhH
Q 047146 79 QNPQVYLYNFIIQCLSNANPLEAIALYREMLIKGL--LPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTA--LLSNVYV 154 (608)
Q Consensus 79 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~ 154 (608)
.+.|...|+.++.- .+... -++.+.-....+ .-|+.-.....+++...|.+.++.++++.++-.+ +..+...
T Consensus 949 ~r~d~~lW~~vl~~---~n~~R-R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 949 RRKDPELWGSVLLE---SNPYR-RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred HhcCHHHHHHHhcC---CcHHH-HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence 34666677766621 11111 333333222111 2244445778889999999999999999988432 1134466
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 047146 155 FNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK 234 (608)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 234 (608)
.+.|+.+..+. +..+..+..+... .....-+...+...|.+++|..+|++.. -.......++. .
T Consensus 1025 qnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~ 1088 (1630)
T 1xi4_A 1025 QNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---H 1088 (1630)
T ss_pred HHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---H
Confidence 77788777776 5566666655522 1124557788899999999999999962 11222233332 6
Q ss_pred cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047146 235 LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFR 314 (608)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 314 (608)
.+++++|.++.+.+ . +..+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|++.|.
T Consensus 1089 i~nldrAiE~Aerv-----n---~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC-----N---EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HhhHHHHHHHHHhc-----C---CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 78899988888754 2 6788999999999999999999999775 677888999999999999999999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHH
Q 047146 315 RMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSY 394 (608)
Q Consensus 315 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 394 (608)
...+.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny 1224 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 1224 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHH
Confidence 877754 44333445888999998888654443 1 345556667999999999999999999986 489
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
..+...|.+.|++++|++.+++. -+..+|..+..+|...|++..|...... +..+...+..++..|.+
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHH
Confidence 99999999999999999999976 3568999999999999999999876553 23456677899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHHhCCChH
Q 047146 475 AGLIREALDLIKSM-PLVPD-AFVWGALLGACK--IHAKVELAEIVMENLVRFEP-----EGDGAYILMTNIYSSKNRWK 545 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~ 545 (608)
.|.+++|+++++.. +..|. ...|.-+..++. +.++..++.+.|..-....| .+...|..++.+|.+.|+++
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999877 65553 335545555544 44555666666665555444 56678999999999999999
Q ss_pred HHHHHH
Q 047146 546 EALKLR 551 (608)
Q Consensus 546 ~A~~~~ 551 (608)
.|...+
T Consensus 1373 nA~~tm 1378 (1630)
T 1xi4_A 1373 NAIITM 1378 (1630)
T ss_pred HHHHHH
Confidence 998543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=165.28 Aligned_cols=278 Identities=10% Similarity=-0.038 Sum_probs=210.6
Q ss_pred hcCChHHHHH-HHccCC---CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChH
Q 047146 271 KCGNIPSARK-VFDEMP---VK----NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLE 342 (608)
Q Consensus 271 ~~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 342 (608)
-.|++++|.+ .|++.. +. +...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 666443 11 24557777777788888888888888877753 445567777777777888888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHH---------------HHHHHHHc
Q 047146 343 LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTA---------------MIVGLAIH 404 (608)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~ 404 (608)
.|...+..+.+.. +.+..++..+..+|...|++++|.+.|+++.. | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888887777665 34566777788888888888888888876642 2 2222211 23334488
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPD---EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 481 (608)
|++++|+..++++.+. .|+ ..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|
T Consensus 195 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999985 444 678999999999999999999999999873 233578899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhCCChHHHH
Q 047146 482 LDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG-----------DGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 482 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 548 (608)
++.++++ ...| +..++..+...+...|++++|...++++.+..|++ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999988 4444 67889999999999999999999999999998887 678999999999999999999
Q ss_pred HHHHHH
Q 047146 549 KLRKKM 554 (608)
Q Consensus 549 ~~~~~m 554 (608)
.++++-
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 988643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-14 Score=158.06 Aligned_cols=351 Identities=14% Similarity=0.071 Sum_probs=271.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhcccCCCCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 153 YVFNTLMRLYAVCGLIKAVHKLFHFRQHPQA--QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 153 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
.--+..++.|+..|...+|.++++....... ..+...-|.++.+..+. +..+..++.++... .....+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence 3345666777788888888888887542211 12334456666666666 45666666655531 11333667
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHH
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEAL 310 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 310 (608)
.|...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|+
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-------NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 78889999999999988631 2333333332 7888999999998774 4678999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC
Q 047146 311 DIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD 390 (608)
Q Consensus 311 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 390 (608)
+.|.+. -|...|..++.+|.+.|+++++.+++...++.. +++.+.+.++.+|++.+++++...+. ..++
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPN 1194 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCC
Confidence 999663 467788889999999999999999999888765 33334456999999999999755553 4567
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCF 1258 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHH
Confidence 778888999999999999999999985 48999999999999999999998877 34588999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC--CChHHHH
Q 047146 471 LFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK--NRWKEAL 548 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~ 548 (608)
+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+.+++.....|..|+.+|++- ++.-++.
T Consensus 1259 acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999877654 446667778999999999999999999999999999999998998888865 3455555
Q ss_pred HHHH
Q 047146 549 KLRK 552 (608)
Q Consensus 549 ~~~~ 552 (608)
++|.
T Consensus 1337 k~f~ 1340 (1630)
T 1xi4_A 1337 ELFW 1340 (1630)
T ss_pred HHHH
Confidence 5554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-17 Score=154.19 Aligned_cols=268 Identities=9% Similarity=-0.039 Sum_probs=188.0
Q ss_pred HhcCChHHHHHHHccCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHH
Q 047146 270 LKCGNIPSARKVFDEMPVKNV----VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK 345 (608)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 345 (608)
...|+++.|+..++.....++ .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555554432221 12233445555555555555544321 2344445555555555555555665
Q ss_pred HHHHHHHHcCC-CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 346 WVHTYLDKNHI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 346 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
+.++.+...+. +.+...+..+..+|...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 55555555443 23445556677889999999999999998 567889999999999999999999999999985 56
Q ss_pred CHHHH---HHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047146 425 DEVTF---VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGA 499 (608)
Q Consensus 425 ~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 499 (608)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| ++.++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 64321 12334445669999999999999984 4557889999999999999999999999997 4455 7778999
Q ss_pred HHHHHHHcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHH
Q 047146 500 LLGACKIHAKVEL-AEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLR 551 (608)
Q Consensus 500 l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 551 (608)
++..+...|+.++ +.++++++.+..|+++.+ .+...+.+.++++..-|
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 9999999999875 678999999999999743 34556666666665443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-15 Score=151.92 Aligned_cols=352 Identities=11% Similarity=-0.002 Sum_probs=295.5
Q ss_pred CCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc----cCCchHHHHHHHHHHHccCCCC
Q 047146 185 RDLVSWTTLIQAYVK----MDYPTEAILSFFDMCQANLRPDGMILVIVLSACSK----LGDLSLGIKIHRYITDNHFNLS 256 (608)
Q Consensus 185 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 256 (608)
.++.++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 366677777777877 899999999999998764 56677788888887 899999999999998874
Q ss_pred CchHHHHHHHHHHHh----cCChHHHHHHHccCCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHH
Q 047146 257 PDVFIHNALIDMYLK----CGNIPSARKVFDEMPV-KNVVSWNSMIAGLTH----RGQFKEALDIFRRMQGLGLKPDDFT 327 (608)
Q Consensus 257 p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 327 (608)
+...+..|..+|.. .+++++|.+.|++... .+...+..+...|.. .+++++|++.|++..+.| +...
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 67778889999988 8899999999998763 466778888888887 789999999999998875 5677
Q ss_pred HHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHhhcCC-CChhHHHHHH
Q 047146 328 LVCVLNSCAN----IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK----CGRIDQAFGVFRSMKC-RDVYSYTAMI 398 (608)
Q Consensus 328 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 398 (608)
+..+...+.. .++.++|...+....+.+ +...+..+..+|.. .+++++|...|++..+ .+...+..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 262 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7778888877 899999999999998875 45677788888886 7899999999998654 5677788888
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----ccHHHHHHHHHHhHhhcCCCCChhHHHHHH
Q 047146 399 VGLAI----HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA-----GLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469 (608)
Q Consensus 399 ~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 469 (608)
..|.. .+++++|+.+|++..+.| +...+..+...+... +++++|...+++..+. .+...+..+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHH
Confidence 88888 899999999999998764 455667777777776 8999999999999872 3556778888
Q ss_pred HHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh--
Q 047146 470 DLFGRAG---LIREALDLIKSMPLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS-- 540 (608)
Q Consensus 470 ~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 540 (608)
..|.+.| +.++|++.|++.-...++..+..+...|.. .+++++|...++++.+.+ ++..+..|+.+|.+
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888867 789999999988223578888889999988 899999999999998865 56789999999998
Q ss_pred --CCChHHHHHHHHHHHhCCC
Q 047146 541 --KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 541 --~g~~~~A~~~~~~m~~~~~ 559 (608)
.+++++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-17 Score=157.35 Aligned_cols=279 Identities=12% Similarity=0.055 Sum_probs=121.6
Q ss_pred HccCCchHHHh---hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHH
Q 047146 66 SLSRGNEIENL---SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHA 141 (608)
Q Consensus 66 ~~~g~~~~A~~---~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 141 (608)
-+.|++++|.+ ..++| .+|..+..++.+.|+.++ ++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46788888888 55444 489999999999999999 9999653 588899999999999999999999888
Q ss_pred HHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 047146 142 YSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPD 221 (608)
Q Consensus 142 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 221 (608)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77774 45678899999999999999999988864 67779999999999999999999999987
Q ss_pred HhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHH
Q 047146 222 GMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLT 301 (608)
Q Consensus 222 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 301 (608)
..|..+..++.+.|+++.|.+.+..+ . ++.+|..++.+|...|+++.|......+. .++.....++..|.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA-----~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA-----N---STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ 218 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH-----T---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc-----C---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence 47889999999999999999999887 1 78899999999999999999988877765 44444556888999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc--CChHHHHHHHHHHHHcCCCC------chhHHHHHHHHhHhc
Q 047146 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI--GWLELGKWVHTYLDKNHINT------DGFIGNALVDMYAKC 373 (608)
Q Consensus 302 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~ 373 (608)
+.|.+++|+.+++...... +-....|+-+--.+++- +.+.+..+.|. .+.++++ +...|..++-.|...
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887643 33344444444444432 23333333222 1122222 244555556666666
Q ss_pred CCHHHHHHH
Q 047146 374 GRIDQAFGV 382 (608)
Q Consensus 374 g~~~~A~~~ 382 (608)
++++.|..+
T Consensus 296 ~e~d~A~~t 304 (449)
T 1b89_A 296 EEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHH
T ss_pred chHHHHHHH
Confidence 666655543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-15 Score=155.35 Aligned_cols=412 Identities=10% Similarity=0.053 Sum_probs=287.0
Q ss_pred CCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHH
Q 047146 79 QNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNT 157 (608)
Q Consensus 79 ~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (608)
.+.|..+|..++. +.+.|+.+. ..+|+++.+.- +-+...|...+..+.+.|+++.|..+|+.+++.. |+...|..
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 4567889999998 477899999 99999998752 3355578899999999999999999999998864 67777877
Q ss_pred HHHH-HHhcCCHHHHHH----HhcccCCC-CCC-CCcchHHHHHHHHHh---------CCCchHHHHHHHHHHHCCCCCC
Q 047146 158 LMRL-YAVCGLIKAVHK----LFHFRQHP-QAQ-RDLVSWTTLIQAYVK---------MDYPTEAILSFFDMCQANLRPD 221 (608)
Q Consensus 158 li~~-~~~~g~~~~A~~----~~~~m~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~ 221 (608)
.+.. ....|+.++|.+ +|+..... +.. ++...|...+....+ .|+++.|..+|++..+. |+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~ 161 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PM 161 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CC
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hh
Confidence 7753 345678777665 67653221 222 355678888876655 68899999999999873 33
Q ss_pred H---hHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH----------HccCC--
Q 047146 222 G---MILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV----------FDEMP-- 286 (608)
Q Consensus 222 ~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----------~~~~~-- 286 (608)
. ..|..........|. ..+..++. .+.++++.|..+ +++..
T Consensus 162 ~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINI-HLAKKMIE-----------------------DRSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred hhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------------HhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2 233322221111110 11111110 011223333332 22211
Q ss_pred -CCC--------hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCChHHHHHHHHHHhc-------cCChH
Q 047146 287 -VKN--------VVSWNSMIAGLTHR----GQF----KEALDIFRRMQGLGLKPDDFTLVCVLNSCAN-------IGWLE 342 (608)
Q Consensus 287 -~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~ 342 (608)
.|+ ...|...+...... ++. +++..+|++..... +-+...|......+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 122 23555555433222 222 37778888887752 3456667666666664 68877
Q ss_pred -------HHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-Ch-hHHHHHHHHHHHcCChHHHH
Q 047146 343 -------LGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-DV-YSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 343 -------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~~~~~~A~ 411 (608)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|++..+ | +. ..|...+..+.+.|+.++|.
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 8889999888643455688889999999999999999999998753 3 33 48999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHH-HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 047146 412 DIFSEMSQVGIEPD-EVTFVGVLSA-CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM- 488 (608)
Q Consensus 412 ~~~~~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 488 (608)
.+|++..+. .|+ ...+...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.
T Consensus 377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 999999885 343 3333332222 335899999999999998742 335788999999999999999999999987
Q ss_pred ---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 489 ---PLVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 489 ---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
+..|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22332 458888888889999999999999999998885
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-17 Score=161.47 Aligned_cols=261 Identities=8% Similarity=-0.095 Sum_probs=210.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888889999999999999888764 4567788888888888999999999998888765 345778888999
Q ss_pred HhHhcCCHHHHHHHHhhcCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 047146 369 MYAKCGRIDQAFGVFRSMKCRD-------------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE-PDEVTFVGVLS 434 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 434 (608)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999998876311 223345578899999999999999999985322 15778999999
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 512 (608)
.+...|++++|.+.++++.+. .+.+..+|..+..+|.+.|++++|++.++++ ...| +..+|..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 3346789999999999999999999999988 4455 58899999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 513 AEIVMENLVRFEPE------------GDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 513 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
|...+++++++.|+ +...|..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998776 356899999999999999998887765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-15 Score=157.67 Aligned_cols=388 Identities=9% Similarity=-0.084 Sum_probs=190.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhcccCCC--------CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-----C-
Q 047146 152 VYVFNTLMRLYAVCGLIKAVHKLFHFRQHP--------QAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQA-----N- 217 (608)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~- 217 (608)
...||.|...|...|+.++|++.|++..+. .......+|+.+..+|...|++++|+..+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666666666666666542110 01112345555666666666666666666554331 0
Q ss_pred CCC-CHhHHHHHHHHhhc--cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHH---HhcCChHHHHHHHccCC---CC
Q 047146 218 LRP-DGMILVIVLSACSK--LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMY---LKCGNIPSARKVFDEMP---VK 288 (608)
Q Consensus 218 ~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~~~---~~ 288 (608)
..+ ...++.....++.. .+++++|...|+.+++..+. +...+..+..++ ...++.++|++.|++.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 011 12233333333322 23455666666665555432 333333333332 23344444554444332 22
Q ss_pred ChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH
Q 047146 289 NVVSWNSMIAGLTH----RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGN 364 (608)
Q Consensus 289 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (608)
+...+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 33334333333322 234455555555554432 2333444445555555555555555555554433 22233333
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHH
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~ 443 (608)
.+..+|...+....+. .. ..........+.+++|...+++..+. .| +..++..+...+...|+++
T Consensus 286 ~lg~~y~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNL-----RE-------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhH-----HH-------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHH
Confidence 3333332211100000 00 00000011123457788888888774 44 3457888888999999999
Q ss_pred HHHHHHHHhHhhcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047146 444 EGCKHFLDMSRVYNLQPQT--EHYGCMVD-LFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMEN 519 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 519 (608)
+|...|+++.+ ....+.. ..+..+.. .+...|+.++|+..+++. .+.|+...+... .+.+..++++
T Consensus 352 ~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~ 421 (472)
T 4g1t_A 352 EAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHH
Confidence 99999999877 2222221 12333333 234678999999999887 666765443322 3445677888
Q ss_pred HHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 047146 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568 (608)
Q Consensus 520 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 568 (608)
.++.+|+++.+|..|+.+|...|++++|++.+++..+.+.....+.+|+
T Consensus 422 ~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 8899999999999999999999999999999999998776655555554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=157.99 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=95.1
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHH
Q 047146 225 LVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLT 301 (608)
Q Consensus 225 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 301 (608)
+..+...+...|++++|...++.+++..+. +..++..+..+|.+.|++++|.+.|+++. +.+..+|..+...+.
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 333444444444444444444444443222 33444444444444444444444444432 223445555555556
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChH-HHHH---------------HHHHHhccCChHHHHHHHHHHHHcCCCC-chhHHH
Q 047146 302 HRGQFKEALDIFRRMQGLGLKPDDF-TLVC---------------VLNSCANIGWLELGKWVHTYLDKNHINT-DGFIGN 364 (608)
Q Consensus 302 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 364 (608)
..|++++|+..++++.... |+.. .+.. .+..+...|+++.|...+..+.+..... +..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 6666666666666655532 2211 1110 1111123444444444444444332111 233444
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccc
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAG 440 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 440 (608)
.+..+|.+.|++++|...|++.. ..+...|..+...+...|++++|+..|+++.+. .| +..++..+..++.+.|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCC
Confidence 44444444444444444444332 122334444444444444444444444444442 22 2334444444444444
Q ss_pred cHHHHHHHHHHhH
Q 047146 441 LVEEGCKHFLDMS 453 (608)
Q Consensus 441 ~~~~a~~~~~~~~ 453 (608)
++++|...|+.+.
T Consensus 300 ~~~~A~~~~~~al 312 (368)
T 1fch_A 300 AHREAVEHFLEAL 312 (368)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-16 Score=147.52 Aligned_cols=245 Identities=9% Similarity=0.021 Sum_probs=201.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGLKPDD--FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG 374 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 374 (608)
++-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999999876543 4543 3556678899999999999875543 24567778888999999999
Q ss_pred CHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 047146 375 RIDQAFGVFRSMK----CR-DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 375 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 556777788999999999999999987 456778899999999999999999999
Q ss_pred HHhHhhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 450 LDMSRVYNLQPQTEH---YGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 450 ~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999883 355321 123445555669999999999998 333478899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCChHH-HHHHHHHHHh
Q 047146 525 PEGDGAYILMTNIYSSKNRWKE-ALKLRKKMKE 556 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 556 (608)
|+++.++..++.++...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999976 5789998874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-16 Score=152.56 Aligned_cols=258 Identities=9% Similarity=-0.059 Sum_probs=181.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047146 293 WNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372 (608)
Q Consensus 293 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 372 (608)
|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+..+|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 4444445555555555555555554432 2233444444555555555555555555554442 2234455555666666
Q ss_pred cCCHHHHHHHHhhcCC--C-ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 373 CGRIDQAFGVFRSMKC--R-DVYSYTAM--------------IV-GLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
.|++++|.+.++++.. | +...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 6666666666655432 1 12222222 22 3667788999999999998853 335678888999
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 512 (608)
.+...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999873 2345788999999999999999999999987 3344 67889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 513 AEIVMENLVRFEPE------------GDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 513 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|...++++.+..|+ ++..|..++.+|.+.|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999998 67899999999999999999999987543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=154.34 Aligned_cols=274 Identities=11% Similarity=-0.010 Sum_probs=172.1
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHH
Q 047146 184 QRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHN 263 (608)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~ 263 (608)
..+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+++..+. +..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 137 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN---NLKALM 137 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHH
Confidence 3456668888888888888888888888887653 235667777777888888888888888887776433 566677
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC
Q 047146 264 ALIDMYLKCGNIPSARKVFDEMPVKN---VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340 (608)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 340 (608)
.+..+|...|++++|...|+++...+ ...+..+. .....+..+...+...|+
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------------CCHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhh
Confidence 77777777777777776666654211 11111110 001112222334444444
Q ss_pred hHHHHHHHHHHHHcCCC-CchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047146 341 LELGKWVHTYLDKNHIN-TDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSE 416 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 416 (608)
++.|...+..+.+.... .+..++..+..+|...|++++|.+.|++.. ..+..+|..+..+|...|++++|+..|++
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444443321 145555666667777777777777776654 23566777778888888888888888888
Q ss_pred HHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCC----------CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 047146 417 MSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL----------QPQTEHYGCMVDLFGRAGLIREALDLI 485 (608)
Q Consensus 417 m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~p~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (608)
+.+. .|+ ..++..+..++...|++++|...|+++.+...- ..+...|..+..++...|+.+.+.++.
T Consensus 273 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 273 ALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7774 443 567777778888888888888888877662111 012567888888888888888888877
Q ss_pred HhC
Q 047146 486 KSM 488 (608)
Q Consensus 486 ~~~ 488 (608)
++-
T Consensus 351 ~~~ 353 (365)
T 4eqf_A 351 LGD 353 (365)
T ss_dssp TTC
T ss_pred Hhh
Confidence 654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-17 Score=173.00 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=125.9
Q ss_pred eeHHHHHHHHhccCCcHHHHHHHHHHH---HhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHH
Q 047146 118 YTLPYVLKACWQSQSLRVGQQVHAYSM---KTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194 (608)
Q Consensus 118 ~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 194 (608)
.||+++|.+|++.|++++|..+|..|. +.|+.||+.+||+||++|++.|++++|.++|++|...|..||++|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 489999999999999999999998875 45889999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCc-hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCc------hHHHHHHHH
Q 047146 195 QAYVKMDYP-TEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPD------VFIHNALID 267 (608)
Q Consensus 195 ~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~------~~~~~~li~ 267 (608)
.++++.|+. ++|.++|++|.+.|+.||..||++++..+.+ ..+++.+.+..++..|+ +.+...|.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR-------~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR-------ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH-------HHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH-------HHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 999999985 7889999999999999999999988865433 34555565555555544 455566777
Q ss_pred HHHhcC
Q 047146 268 MYLKCG 273 (608)
Q Consensus 268 ~~~~~g 273 (608)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-15 Score=152.01 Aligned_cols=385 Identities=9% Similarity=-0.020 Sum_probs=238.5
Q ss_pred CceeHHHHHHHHhccCCcHHHHHHHHHHHHh-----C--cCC-cHhHHHHHHHHHHhcCCHHHHHHHhcccCCC-----C
Q 047146 116 NTYTLPYVLKACWQSQSLRVGQQVHAYSMKT-----A--LLS-NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP-----Q 182 (608)
Q Consensus 116 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 182 (608)
....|+.+-..+...|+.++|.+.+...++. + ..| ...+|+.+...|...|++++|...+++.... .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888889999999999999987653 1 122 3467899999999999999999999864321 0
Q ss_pred -CC-CCcchHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCH-hHHHHHHHH---hhccCCchHHHHHHHHHHHccCC
Q 047146 183 -AQ-RDLVSWTTLIQAYVK--MDYPTEAILSFFDMCQANLRPDG-MILVIVLSA---CSKLGDLSLGIKIHRYITDNHFN 254 (608)
Q Consensus 183 -~~-~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 254 (608)
.. ....+++.+..++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++.++|.+.++..++..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 123445555555544 45799999999999874 4543 344444333 45678889999999999988644
Q ss_pred CCCchHHHHHHHHHHHh----cCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-hH
Q 047146 255 LSPDVFIHNALIDMYLK----CGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPD-DF 326 (608)
Q Consensus 255 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 326 (608)
+..++..+...+.. .|++++|.+.+++.. +.+..++..+...|...|++++|+..+++..+. .|+ ..
T Consensus 208 ---~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 208 ---NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp ---CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred ---chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 56666666655554 467888999998764 456778999999999999999999999999886 344 44
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHH
Q 047146 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAI 403 (608)
Q Consensus 327 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 403 (608)
++..+...+...+.... ... ...........+..+.|...|+... ..+...|..+...|..
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 55555444432111100 000 0011111112234567777776654 3456788889999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDEV--TFVGVLS-ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (608)
.|++++|+..|++..+....|... .+..+.. .....|+.++|+..|.+..+ +.|+....... ...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHH
Confidence 999999999999998854333221 2333332 24577999999999999876 45654332222 223
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 481 ALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 481 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
+.++++.. ...| +..+|..+...+...|++++|.+.++++++++|.+|.++..++
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33444433 2234 6778999999999999999999999999999999887776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=142.13 Aligned_cols=95 Identities=17% Similarity=0.001 Sum_probs=51.7
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHH
Q 047146 186 DLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNAL 265 (608)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~l 265 (608)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|+++.|...++.+.+..+. +..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---CHHHHHHH
Confidence 44455666666667777777777777665542 224445555556666666666666666666655322 33444444
Q ss_pred HHHHHhcCChHHHHHHHcc
Q 047146 266 IDMYLKCGNIPSARKVFDE 284 (608)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~ 284 (608)
...|...|++++|.+.|++
T Consensus 96 a~~~~~~~~~~~A~~~~~~ 114 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRA 114 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4444444444444444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-14 Score=133.00 Aligned_cols=219 Identities=14% Similarity=0.059 Sum_probs=164.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 371 (608)
.|..+...+...|++++|+..|++..+.. .+...+ ..+..+|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-----------------------------------~~~~~~~~ 49 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYL-----------------------------------NNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHH-----------------------------------HHHHHHHH
Confidence 45555556666666666666666655543 444444 44555555
Q ss_pred hcCCHHHHHHHHhhcCC--C----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 047146 372 KCGRIDQAFGVFRSMKC--R----D----VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 441 (608)
..|++++|.+.|++..+ | + ...|..+...+...|++++|+..|++.... .|+. ..+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhH
Confidence 55555555555554432 1 1 466777888888888888998888888873 5553 34666788
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047146 442 VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMEN 519 (608)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 519 (608)
+++|...++.+.. ..+.+...+..+...+...|++++|.+.++++ ...| +..+|..+...+...|++++|...+++
T Consensus 121 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999998876 22235677888999999999999999999988 3334 678899999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 520 LVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 520 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.+..|+++..|..++.+|.+.|++++|...+++..+..
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999987643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-16 Score=164.69 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=104.9
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMK-------CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTF 429 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 429 (608)
..-..+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445678999999999999999999987653 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccc-HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047146 430 VGVLSACSHAGL-VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDL 484 (608)
Q Consensus 430 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 484 (608)
+++|.++++.|+ .++|.++|++|.+ .|+.||..+|++++..+.+.+-++.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999887 5788899999988 59999999999888777665444443333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=131.15 Aligned_cols=194 Identities=15% Similarity=0.036 Sum_probs=157.0
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 047146 357 NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGV 432 (608)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l 432 (608)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666778888899999999999999997653 46688899999999999999999999999984 564 5688888
Q ss_pred HHHHhcc-----------ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 047146 433 LSACSHA-----------GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGA 499 (608)
Q Consensus 433 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 499 (608)
..++... |++++|...+++..+ +.| +...+..+..+|...|++++|++.|++. .+..+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999987 345 5788899999999999999999999987 22278889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+..++...|++++|...++++++..|+++..+..++.++.+.|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998753
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-14 Score=132.13 Aligned_cols=237 Identities=12% Similarity=0.031 Sum_probs=167.0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCChHHHHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMP--VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG--LKPDDFTLVCVLN 333 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~ 333 (608)
....+..+...+...|++++|...|++.. ..+...|..+..++...|++++|+..+++..+.. ..|+...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------ 77 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------ 77 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH------
Confidence 45678889999999999999999998764 2677889999999999999999999999987642 1112100
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHH
Q 047146 334 SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~ 411 (608)
...++..+..+|...|++++|...|++... |+ ...+...|++++|.
T Consensus 78 -------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 78 -------------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKEL 125 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHH
Confidence 022334444555555555555555554432 22 12355556677777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 047146 412 DIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-P 489 (608)
Q Consensus 412 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 489 (608)
..++++... .|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|++.++++ .
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777777763 443 346777777778888888888888887762 2335677778888888888888888888777 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCCchHHHHHH
Q 047146 490 LVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE------PEGDGAYILMTN 536 (608)
Q Consensus 490 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 536 (608)
..| +...|..+...+...|++++|...++++.+.. |++...+..+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 334 57778888888888999999999999888887 766655555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=130.26 Aligned_cols=241 Identities=10% Similarity=-0.086 Sum_probs=184.9
Q ss_pred hcCChhHHHHHHHHHHhCCCC---CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047146 302 HRGQFKEALDIFRRMQGLGLK---PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQ 378 (608)
Q Consensus 302 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (608)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888888887775321 134566677777778888888888888777764 3456777888889999999999
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhh
Q 047146 379 AFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRV 455 (608)
Q Consensus 379 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 455 (608)
|.+.|++..+ .+...|..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999987753 4678899999999999999999999999988 4666655555566667789999999999888773
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 456 YNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 456 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
.+++...+. ++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++.+..|++..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 334444444 777788888899999999887 43332 578888899999999999999999999999998754
Q ss_pred hHHHHHHHHHhCCChHHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKLR 551 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~ 551 (608)
. .+.++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 366788889999988776
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-13 Score=128.33 Aligned_cols=176 Identities=10% Similarity=-0.038 Sum_probs=97.8
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSH 438 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 438 (608)
+..+..+|...|++++|.+.|++.. ..+...|..+...|...|++++|+..|++..+. .| +...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHH
Confidence 4445555555555555555555443 123445555555566666666666666555543 33 23344444423333
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL---IREALDLIKSM----PLVPD------AFVWGALLGACK 505 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~ 505 (608)
.+++++|.+.|+.+.+. .+.+...+..+..++...|+ +++|...++++ ...|+ ..+|..+...+.
T Consensus 155 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 34666666666666552 12234555555555655555 55555555444 11233 246667778888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
..|++++|...++++.+++|+++.++..+..+....+
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 8999999999999999999998877777666555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-12 Score=128.97 Aligned_cols=378 Identities=8% Similarity=-0.069 Sum_probs=205.9
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCH---HHHHHHhcccCCCCCCCCcchHHHHHHHHHh
Q 047146 123 VLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLI---KAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199 (608)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 199 (608)
+...+.+.|++++|.+++....+.|- ...+..|-.+|...|+. ++|...|+.... .++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----TSPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHh
Confidence 44556677889999999998888762 33444555566667777 888888888543 266667777775655
Q ss_pred CC-----CchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCc---hHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh
Q 047146 200 MD-----YPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL---SLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK 271 (608)
Q Consensus 200 ~g-----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 271 (608)
.+ ++++|+..|++..+.|.. ..+..+...|...+.. ..+.+.+......+ +......|...|..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-----~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-----YPEAGLAQVLLYRT 153 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-----CTTHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-----CHHHHHHHHHHHHc
Confidence 55 678899999888876532 2555566666554433 33444444444443 45566677777777
Q ss_pred cCCh----HHHHHHHccCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHH
Q 047146 272 CGNI----PSARKVFDEMPVKNVVSWNSMIAGLTHRG---QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELG 344 (608)
Q Consensus 272 ~g~~----~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 344 (608)
.+.+ +.+..+++.....++..+..+...|...| +.++|++.|++..+.| .++...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g------ 226 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA------ 226 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG------
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC------
Confidence 7744 44445555555556667777777777777 7777887777777766 34444333333333322
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCC
Q 047146 345 KWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVG-L--AIHGKAWKALDIFSEMSQVG 421 (608)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g 421 (608)
....+++++|.+.|+.....+...+..+... + ...+++++|+.+|++..+.|
T Consensus 227 -------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 227 -------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp -------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred -------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 0001455555555554442234444444444 2 34567777777777776654
Q ss_pred CCCCHHHHHHHHHHHhccc-----cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCC
Q 047146 422 IEPDEVTFVGVLSACSHAG-----LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIREALDLIKSMPLVP 492 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p 492 (608)
+...+..+...|. .| ++++|.+.|++.. ..+...+..|..+|.. ..++++|.+.|++.-...
T Consensus 282 ---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 282 ---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp ---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred ---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 4445555555554 44 7777777777664 3345566666666655 337777777777761122
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 493 DAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 493 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+......|...|.. ..+.++|...++++.+.++.........+......++.++|..+.++..+
T Consensus 353 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 353 QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33333444444432 45778888888887777655432222222222233456677777776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-12 Score=118.34 Aligned_cols=197 Identities=10% Similarity=-0.060 Sum_probs=155.1
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44556677777888888888888887654 2356778888888888888888888888887742 3355678888888
Q ss_pred Hhcc-ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 047146 436 CSHA-GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVE 511 (608)
Q Consensus 436 ~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 511 (608)
+... |++++|...++.+.+ .+..| +...+..+...+...|++++|++.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 889998888888876 33344 3567788888888889999998888877 3334 5778888888888899999
Q ss_pred HHHHHHHHHHhcCC-CCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 512 LAEIVMENLVRFEP-EGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 512 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+|...++++.+..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999988888 88888888888888999999999888888653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=121.87 Aligned_cols=197 Identities=11% Similarity=-0.035 Sum_probs=153.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 436 (608)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455667777778888888888887664 2356777888888888888888888888887752 23556777788888
Q ss_pred hccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 513 (608)
...|++++|.+.++++.+ .+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888866 33445 4567778888888888888888888877 3334 577788888888888999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
...++++.+..|++...+..++.+|.+.|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999988888888888888888888888899999988888887543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=125.87 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=143.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344556677777888888888888887643 356778888888888899999999888888752 3356678888888
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 513 (608)
+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88889999999988888773 2345677888888888999999999888887 3333 677888888888999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
...++++.+..|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999888889999999999999999999999887543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-12 Score=124.20 Aligned_cols=218 Identities=11% Similarity=-0.034 Sum_probs=163.4
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChH
Q 047146 335 CANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD----VYSYTAMIVGLAIHGKAW 408 (608)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~ 408 (608)
+...|+++.|...+..+.+.. +.+...+..+..+|...|++++|...|++... ++ ...|..+...+...|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 334444444444444443332 12233455666677777777777777776543 22 234888999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 047146 409 KALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIK 486 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (608)
+|+..|++..+. .| +..++..+...+...|++++|...++++.+ ..| +...+..+...+...+++++|.+.++
T Consensus 92 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 92 LAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 44 456899999999999999999999999976 344 56777777734445569999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 487 SM-PLVP-DAFVWGALLGACKIHAK---VELAEIVMENLVRFE---PEG-----DGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 487 ~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..+|..++..|.+.|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88 4455 46778888888888888 888999999998875 442 25788999999999999999999999
Q ss_pred HHhCC
Q 047146 554 MKERK 558 (608)
Q Consensus 554 m~~~~ 558 (608)
..+..
T Consensus 247 al~~~ 251 (272)
T 3u4t_A 247 ILALD 251 (272)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-12 Score=133.03 Aligned_cols=345 Identities=11% Similarity=-0.026 Sum_probs=228.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCc---hHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 047146 192 TLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDL---SLGIKIHRYITDNHFNLSPDVFIHNALIDM 268 (608)
Q Consensus 192 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~p~~~~~~~li~~ 268 (608)
.+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~~ 78 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------------CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 35667788899999999999998776 344455566666777777 8999999888754 34455666665
Q ss_pred HHhcC-----ChHHHHHHHccCCC-CChhhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 047146 269 YLKCG-----NIPSARKVFDEMPV-KNVVSWNSMIAGLTHRGQFK---EALDIFRRMQGLGLKPDDFTLVCVLNSCANIG 339 (608)
Q Consensus 269 ~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 339 (608)
+...+ +.++|.+.|++... .+...+..|...|...+..+ ++.+.+.+....| +......+...|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55554 77889999988763 34557888888888776544 4555555555544 2345556666677767
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc----CChHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG---RIDQAFGVFRSMKC---RDVYSYTAMIVGLAIH----GKAWK 409 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~ 409 (608)
.++.+......+.+.-...++..+..|..+|.+.| +.++|.+.|+...+ ++...+..+...|... +++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 55444443333333222334447788889999999 89999999987653 3444446677777554 68999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-----CHHHH
Q 047146 410 ALDIFSEMSQVGIEPDEVTFVGVLSA-C--SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG-----LIREA 481 (608)
Q Consensus 410 A~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A 481 (608)
|+.+|++.. .| +...+..+... + ...+++++|.+.|++..+ .| +...+..|..+|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 999999987 32 34455555555 3 568999999999999887 33 6677778888887 55 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCChHHHHHHHHH
Q 047146 482 LDLIKSMPLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS----KNRWKEALKLRKK 553 (608)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 553 (608)
.+.|++.- ..++..+..+...|.. ..++++|...++++.+. .++.....|+.+|.. ..+.++|...+++
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999987 5577787777777765 44999999999998875 456688899999985 4689999999999
Q ss_pred HHhCCCc
Q 047146 554 MKERKVK 560 (608)
Q Consensus 554 m~~~~~~ 560 (608)
..+.|..
T Consensus 384 A~~~g~~ 390 (452)
T 3e4b_A 384 AKAQDTP 390 (452)
T ss_dssp HHTTCCH
T ss_pred HHHCCCH
Confidence 9888764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-11 Score=117.20 Aligned_cols=224 Identities=11% Similarity=0.014 Sum_probs=141.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
+..++..+...+...|++++|+..|++..+. -+...+.. +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~-----------------------------------lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFN-----------------------------------LGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHH-----------------------------------HHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHH-----------------------------------HHH
Confidence 4455666666667777777777777766652 22333433 444
Q ss_pred HhHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 047146 369 MYAK----CGRIDQAFGVFRSMKC-RDVYSYTAMIVGLAI----HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH- 438 (608)
Q Consensus 369 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 438 (608)
+|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 4444 5555555555544332 244555555566666 666666666666666643 45566666666666
Q ss_pred ---cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 047146 439 ---AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIREALDLIKSMPLVPDAFVWGALLGACKI----H 507 (608)
Q Consensus 439 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 507 (608)
.+++++|...|++..+ .+ +...+..+...|.. .+++++|++.+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 6777777777777665 22 44556666666666 67777777777765111345666667777777 7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 047146 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSS----KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 559 (608)
+++++|...++++.+.+| +..+..++.+|.+ .+++++|.+.+++..+.|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 788888888887777765 4567777888887 7888888888887776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-12 Score=117.56 Aligned_cols=204 Identities=15% Similarity=0.000 Sum_probs=147.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
...|..+...+...|++++|+..|+++.+.. +.+...+ ..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~-----------------------------------~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAH-----------------------------------AALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHH-----------------------------------HHHHHH
Confidence 4567777788888888888888888877642 2233334 444555
Q ss_pred hHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHH
Q 047146 370 YAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 445 (608)
|...|++++|.+.|+++. ..+...|..+...|...|++++|.++++++...+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443 23456667777777778888888888887776434554 34677777788888888888
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 446 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
.+.++++.+. .+.+...+..++..|...|++++|.+.++++ ...| +...+..+...+...|++++|.+.++++.+.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888763 2335677888888889999999999888887 4444 6677888888889999999999999999999
Q ss_pred CCCCCchH
Q 047146 524 EPEGDGAY 531 (608)
Q Consensus 524 ~p~~~~~~ 531 (608)
.|+++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99887544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-12 Score=121.78 Aligned_cols=239 Identities=12% Similarity=-0.056 Sum_probs=166.0
Q ss_pred CCCchHHHHHHHHHHHCCCC---CCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChH
Q 047146 200 MDYPTEAILSFFDMCQANLR---PDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIP 276 (608)
Q Consensus 200 ~g~~~~a~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 276 (608)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+..+. +..++..+..+|...|+++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHccCHH
Confidence 46778888888888765321 13456777777888888888888888888887543 6778888888888888888
Q ss_pred HHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047146 277 SARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353 (608)
Q Consensus 277 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (608)
+|.+.|++.. +.+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|+++.|...+.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888765 345677888888888889999999988888875 45555555555555667888888888876666
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRD-------VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE 426 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 426 (608)
.. +++...+ .++..+...++.++|...+......+ ...|..+...|...|++++|...|++.... .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 53 2333333 36666777777788888887776532 356777777788888888888888887763 4533
Q ss_pred HHHHHHHHHHhccccHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
. .....++...|++++|.+.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 2 22244556667777766554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-12 Score=116.82 Aligned_cols=191 Identities=14% Similarity=0.023 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA 371 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 371 (608)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444444444444444444444331 1222333333333333333333333333333332 122333334444444
Q ss_pred hc-----------CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 372 KC-----------GRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 372 ~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
+. |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 555555555554431 234455555555666666666666666655544 44555555555566
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
..|++++|...|+++.+. -+.+...+..+..++.+.|++++|++.+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666655541 1223445555555555666666665555543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-12 Score=114.53 Aligned_cols=166 Identities=16% Similarity=0.099 Sum_probs=141.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 468 (608)
+...|..+...|...|++++|++.|++..+. .| +..++..+..++.+.|++++|...+..+... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5567888888888999999999999998874 56 4558888888899999999999999888762 23356677788
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHH
Q 047146 469 VDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 546 (608)
...+...++++.|.+.+++. ...| +...+..+...+...|++++|++.++++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999988887 3344 677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 047146 547 ALKLRKKMKERKV 559 (608)
Q Consensus 547 A~~~~~~m~~~~~ 559 (608)
|++.+++..+.+.
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999987543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-13 Score=122.57 Aligned_cols=213 Identities=11% Similarity=0.074 Sum_probs=141.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
...|..+...+...|++++|...|++..+.. +.+ ...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~-----------------------------------~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KED-----------------------------------AIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTC-----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-ccc-----------------------------------HHHHHHHHHH
Confidence 3456666666667777777777777766532 222 3334455555
Q ss_pred hHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 047146 370 YAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGC 446 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 446 (608)
|...|++++|.+.|++.. ..+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 666666666666666543 2356677777788888888888888888887752 335667778888888889999999
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 447 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
..++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 988888773 2345778888889999999999999998887 3333 67788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhC
Q 047146 525 PEGDGAYILMTNIYSSK 541 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~ 541 (608)
|+++..+..+..+....
T Consensus 224 p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHH 240 (243)
T ss_dssp TTCHHHHHHHTC-----
T ss_pred cchHHHHHHHHHHHhhc
Confidence 99987777766554433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-11 Score=115.60 Aligned_cols=226 Identities=10% Similarity=-0.074 Sum_probs=157.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCCC-ChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHHHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVK-NVVSWNSMIAGLTH----RGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 332 (608)
+...+..+...|...|++++|.+.|++...+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 6778888999999999999999999987644 56778888899999 999999999999998865 455555555
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHH----c
Q 047146 333 NSCAN----IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI----H 404 (608)
Q Consensus 333 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~ 404 (608)
..+.. .+++++|...++...+.+ +...+..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK----------------------------------YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------------CccHHHHHHHHHHcCCCcc
Confidence 55555 555555555555544432 34445555555555 6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cC
Q 047146 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSH----AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AG 476 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 476 (608)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. .+...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666666643 44455555566665 67777777777777652 244566667777777 77
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCC
Q 047146 477 LIREALDLIKSM-PLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 477 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
++++|++.+++. ... +...+..+...+.. .+++++|...++++.+.+|++.
T Consensus 201 ~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 201 NFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 777777777766 222 35566667777777 7888888888888888877653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-11 Score=113.48 Aligned_cols=207 Identities=10% Similarity=-0.059 Sum_probs=146.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
...|..+...+...|++++|+..|++..+.. +.+ ...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~-----------------------------------~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKN-----------------------------------ELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccc-----------------------------------hHHHHHHHHH
Confidence 4456666666666677777766666665542 222 3344555556
Q ss_pred hHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHH
Q 047146 370 YAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIH-GKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEE 444 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 444 (608)
|...|++++|.+.+++.. ..+...|..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666543 23556677777788888 888888888888877433454 3577777888888888888
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 445 GCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLV--PDAFVWGALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
|...++++.+. .+.+...+..++..+.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+.
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888888762 2234677888888889999999999888887 222 366677777788889999999999999999
Q ss_pred hcCCCCCchHHHH
Q 047146 522 RFEPEGDGAYILM 534 (608)
Q Consensus 522 ~~~p~~~~~~~~l 534 (608)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 9999887554433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-10 Score=119.94 Aligned_cols=428 Identities=10% Similarity=0.012 Sum_probs=281.0
Q ss_pred HHHHHHHHHCCCCCCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCC---HHHHHHHhccc
Q 047146 102 IALYREMLIKGLLPNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGL---IKAVHKLFHFR 178 (608)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m 178 (608)
+..|++.+..+. -|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..+|++.
T Consensus 52 i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 52 IGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 666777666553 47778888888888888889999999988876 44566778888888888888 89999999886
Q ss_pred CCCCC-CCCcchHHHHHHHHHhCCCc--------hHHHHHHHHHHH-CCC-CCC-HhHHHHHHHHhhc---------cCC
Q 047146 179 QHPQA-QRDLVSWTTLIQAYVKMDYP--------TEAILSFFDMCQ-ANL-RPD-GMILVIVLSACSK---------LGD 237 (608)
Q Consensus 179 ~~~~~-~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~t~~~ll~~~~~---------~~~ 237 (608)
....+ .|++..|..-+....+.++. +.+.++|+.... .|. .|+ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 66442 36777787777655554443 233466766543 455 554 3455555544332 234
Q ss_pred chHHHHHHHHHHHccCCCCCchHHHHHHHHHHHh-------------cCChHHHHHHHcc-------CCC----------
Q 047146 238 LSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLK-------------CGNIPSARKVFDE-------MPV---------- 287 (608)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~-------~~~---------- 287 (608)
++.+..+|..++.. +...-..+|......--. ..+++.|...+.+ +..
T Consensus 210 ~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred HHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 56777888887753 221122333322221111 1123334444432 110
Q ss_pred ----C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHH-HH
Q 047146 288 ----K--N------VVSWNSMIAGLTHRG-------QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGK-WV 347 (608)
Q Consensus 288 ----~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~ 347 (608)
| + ...|...+.---..+ ..+.+..+|++.... ++-+...|.....-+...|+.+.|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 0 0 124555554333322 123456678777765 3446667777777777888888886 99
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-------------CC------------hhHHHHHHHHHH
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-------------RD------------VYSYTAMIVGLA 402 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~ 402 (608)
++...... +.+...+...+....+.|++++|.++|+.+.. |+ ...|...+....
T Consensus 367 l~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 99888643 45667777888888899999999999987753 21 236888888888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA-GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREA 481 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 481 (608)
+.|..+.|..+|.+..+.-..+....|......-.+. ++.+.|.++|+...+. ++.+...|...++.....|+.+.|
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHH
Confidence 8899999999999998751112233443333332333 4589999999999884 444666778888888889999999
Q ss_pred HHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 482 LDLIKSM-PLVP----DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 482 ~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
..+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 9999987 3333 345888888888899999999999999999999875 333444333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-12 Score=125.76 Aligned_cols=243 Identities=9% Similarity=0.021 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW-LELGKWVHTYLDKNHINTDGFIGNALVDM 369 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (608)
..|+.+...+...|++++|+..+++.++.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456666667777777777777777777642 2334556666666667775 777777777776655 3356677778888
Q ss_pred hHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cccHHH
Q 047146 370 YAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSH-AGLVEE 444 (608)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~g~~~~ 444 (608)
|.+.|++++|+..|+++. ..+...|..+..++...|++++|+..++++.+. .| +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888775 346788888888899999999999999999884 55 45688888888888 555466
Q ss_pred H-----HHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-------
Q 047146 445 G-----CKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAG--LIREALDLIKSMPLVP-DAFVWGALLGACKIHA------- 508 (608)
Q Consensus 445 a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------- 508 (608)
| +..++++.. +.| +...|..+..++.+.| ++++|++.++++...| +...+..+...+.+.|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477777766 345 5678888888888887 6888888888774445 5667788888887764
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHh
Q 047146 509 --KVELAEIVMENL-VRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 509 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 540 (608)
..++|..+++++ .+.+|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999988888888776654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-13 Score=133.54 Aligned_cols=196 Identities=14% Similarity=0.040 Sum_probs=136.4
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCC-----------------hHHHHHHH
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMKC---------RDVYSYTAMIVGLAIHGK-----------------AWKALDIF 414 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~A~~~~ 414 (608)
.++..+...|...|++++|...+++... ....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3445566666666666666666655431 123456667777777777 77777777
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 047146 415 SEMSQV----GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREALDLI 485 (608)
Q Consensus 415 ~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 485 (608)
++..+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 765432 11122 236777777888888888888888887662211112 236778888888999999998888
Q ss_pred HhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCChHHHHHHH
Q 047146 486 KSM-PL---VP----DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYILMTNIYSSKNRWKEALKLR 551 (608)
Q Consensus 486 ~~~-~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 551 (608)
++. .. .. ...++..+...+...|++++|...++++++..+.. ...+..++.+|.+.|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 776 11 11 24577778888999999999999999988775433 347888999999999999999999
Q ss_pred HHHHh
Q 047146 552 KKMKE 556 (608)
Q Consensus 552 ~~m~~ 556 (608)
++..+
T Consensus 367 ~~al~ 371 (411)
T 4a1s_A 367 EQHLQ 371 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-12 Score=126.65 Aligned_cols=224 Identities=10% Similarity=0.029 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC-HHHHHHHHhhcCC---CChhHHHHHHHHH
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGR-IDQAFGVFRSMKC---RDVYSYTAMIVGL 401 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 401 (608)
..+..+...+...|+++.|...++.+++.. +.+..+|+.+..+|...|+ +++|+..|++... .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777888999999999999999876 4567788899999999997 9999999998763 4778999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh-cCCH
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGR-AGLI 478 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 478 (608)
...|++++|+..|+++.+. .| +...|..+..++...|++++|+..++++++ +.| +...|+.+..++.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999984 66 566999999999999999999999999988 345 67889999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-------
Q 047146 479 REA-----LDLIKSM-PLVP-DAFVWGALLGACKIHA--KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN------- 542 (608)
Q Consensus 479 ~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 542 (608)
++| ++.+++. .+.| +...|..+...+...| ++++|...++++ +..|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4777776 5556 6778988888888888 689999999998 889999999999999999875
Q ss_pred --ChHHHHHHHHHH-Hh
Q 047146 543 --RWKEALKLRKKM-KE 556 (608)
Q Consensus 543 --~~~~A~~~~~~m-~~ 556 (608)
.+++|+++++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 358999999998 54
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=130.26 Aligned_cols=270 Identities=10% Similarity=0.001 Sum_probs=125.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCC--CC-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-h
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMP--VK-N----VVSWNSMIAGLTHRGQFKEALDIFRRMQGL----GLKPD-D 325 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 325 (608)
....+......+...|++++|...|++.. .| + ...|..+...+...|++++|...+++.... +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 44555666667777777777777776654 12 2 235666666777777777777777665432 11111 2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcC----C-CCchhHHHHHHHHhHhcCC--------------------HHHHH
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNH----I-NTDGFIGNALVDMYAKCGR--------------------IDQAF 380 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~--------------------~~~A~ 380 (608)
.++..+...+...|+++.|...+..+.+.. . .....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 344444555555666666665555543321 0 0012244445555555555 55555
Q ss_pred HHHhhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHH
Q 047146 381 GVFRSMKC-----R----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPD----EVTFVGVLSACSHAGLVEEGC 446 (608)
Q Consensus 381 ~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~ 446 (608)
+.+++... + ...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44443221 0 112344444445555555555555554433100 011 113444444445555555555
Q ss_pred HHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 047146 447 KHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM----PLVPD----AFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 447 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~ 514 (608)
..+++..+...-.++ ..++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555444331100011 233444444455555555554444443 00111 223444444444555555555
Q ss_pred HHHHHHHhcCCCC
Q 047146 515 IVMENLVRFEPEG 527 (608)
Q Consensus 515 ~~~~~~~~~~p~~ 527 (608)
..++++.++.+..
T Consensus 328 ~~~~~al~~~~~~ 340 (406)
T 3sf4_A 328 HFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5555554444444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-12 Score=124.07 Aligned_cols=261 Identities=14% Similarity=0.041 Sum_probs=173.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CchhHHHHH
Q 047146 296 MIAGLTHRGQFKEALDIFRRMQGLGLKPD----DFTLVCVLNSCANIGWLELGKWVHTYLDKN----HIN-TDGFIGNAL 366 (608)
Q Consensus 296 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 366 (608)
....+...|++++|+..|++..+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3344555555555555555555432 111 133444455555555555555555544321 111 123455666
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGK--------------------AWKALDIFSEM 417 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~~~~~m 417 (608)
...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777888777777766532 22 2367777777888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 418 SQV----GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 418 ~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 11222 236777788888999999999999888752111122 347788889999999999999998876
Q ss_pred -C---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 489 -P---LVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 489 -~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
. ..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 1122 4577778888999999999999999998875443 337889999999999999999999998
Q ss_pred HhC
Q 047146 555 KER 557 (608)
Q Consensus 555 ~~~ 557 (608)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=133.35 Aligned_cols=192 Identities=8% Similarity=-0.069 Sum_probs=159.9
Q ss_pred chhHHHHHHHHhHhcCCH-HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRI-DQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
+...+..+..+|...|++ ++|++.|++.. ..+...|..+...|...|++++|+..|++..+ ..|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 455556666677777777 77777777654 23567888888889999999999999999888 4677788888888
Q ss_pred HHhcc---------ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC----
Q 047146 435 ACSHA---------GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA--------GLIREALDLIKSM-PLVP---- 492 (608)
Q Consensus 435 ~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p---- 492 (608)
.+... |++++|.+.++++.+. .+.+...|..+..+|... |++++|++.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 89998 9999999999999873 233578888999999988 9999999999988 4455
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
+...|..+..++...|++++|...++++.++.|+++.++..++.++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999999999999999999999755443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=129.45 Aligned_cols=198 Identities=12% Similarity=-0.013 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hHHHHHHHHHHhccCC--------------------hHHHH
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGL-KPD----DFTLVCVLNSCANIGW--------------------LELGK 345 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~ 345 (608)
.++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3456666677777777777777776654210 011 3367777778888888 99999
Q ss_pred HHHHHHHHc----CC-CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHH
Q 047146 346 WVHTYLDKN----HI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGKAWKAL 411 (608)
Q Consensus 346 ~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~ 411 (608)
..+....+. +. +....++..+..+|...|++++|...+++..+ ++ ..+|..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 988876542 21 12245678889999999999999999987652 22 247888899999999999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHH
Q 047146 412 DIFSEMSQV----GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREAL 482 (608)
Q Consensus 412 ~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 482 (608)
..+++.... +..+. ..++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998753 11111 357788888999999999999999998763221222 567888999999999999999
Q ss_pred HHHHhC
Q 047146 483 DLIKSM 488 (608)
Q Consensus 483 ~~~~~~ 488 (608)
+.+++.
T Consensus 328 ~~~~~a 333 (406)
T 3sf4_A 328 HFAEKH 333 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-09 Score=114.94 Aligned_cols=421 Identities=9% Similarity=0.020 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCC---chHHHHHHH
Q 047146 135 VGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY---PTEAILSFF 211 (608)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~ 211 (608)
+....++..+... +.|...|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.|+ ++.+.++|+
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3344556555554 368899999999999999999999999997664 34566778888888888898 999999999
Q ss_pred HHHHCC-CCCCHhHHHHHHHHhhccCCc--------hHHHHHHHHHHHccCCC-CC-chHHHHHHHHHHHh---------
Q 047146 212 DMCQAN-LRPDGMILVIVLSACSKLGDL--------SLGIKIHRYITDNHFNL-SP-DVFIHNALIDMYLK--------- 271 (608)
Q Consensus 212 ~m~~~~-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~--------- 271 (608)
+..... ..|+...|..-+....+.++. +...++|+.++.. .+. .| +..+|...+.....
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-CAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH-TTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-hCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 998753 247887777777665555543 3445778777764 122 22 45788888876543
Q ss_pred cCChHHHHHHHccCCC-CC--h-hhHH---HHHHHH----------HhcCChhHHHHHHHHHHh--CCCC----------
Q 047146 272 CGNIPSARKVFDEMPV-KN--V-VSWN---SMIAGL----------THRGQFKEALDIFRRMQG--LGLK---------- 322 (608)
Q Consensus 272 ~g~~~~A~~~~~~~~~-~~--~-~~~~---~li~~~----------~~~g~~~~A~~~~~~m~~--~g~~---------- 322 (608)
.++++.+.++|++... |. . .+|. .+.... -...+++.|...+.++.. .++.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3457788999988763 21 1 2332 222111 001223445555554322 1111
Q ss_pred -----C-----Ch---HHHHHHHHHHhccC-------ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH-H
Q 047146 323 -----P-----DD---FTLVCVLNSCANIG-------WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAF-G 381 (608)
Q Consensus 323 -----p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~ 381 (608)
| +. ..|...+.---..+ ..+.+..+|+.++... +....+|-..+..+...|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 00 12222222222211 1234556777776653 457788888888888899999996 9
Q ss_pred HHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHh
Q 047146 382 VFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG---------IEPD------------EVTFVGVLSACS 437 (608)
Q Consensus 382 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~p~------------~~~~~~ll~~~~ 437 (608)
+|++... .+...|-..+...-+.|++++|.++|+++.... -.|+ ...|...+....
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 9987652 355678888888999999999999999988631 0142 236777788888
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG-LIREALDLIKSM--PLVPDAFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 514 (608)
+.|+.+.|.++|..+.+.. -.+....|...+..-.+.| +.+.|.++|+.. ...-+...|...+......|+.+.|+
T Consensus 446 R~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999999998731 1122344544444444444 589999999987 22236777888888888899999999
Q ss_pred HHHHHHHhcCCC---CCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 515 IVMENLVRFEPE---GDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 515 ~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
.+|++++...|+ ....|..++..-.+.|+.+.+.++.+++.+.-+.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999998874 3457888899999999999999999999876544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-11 Score=119.96 Aligned_cols=158 Identities=8% Similarity=-0.030 Sum_probs=68.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHcC--C----CCchhHHH
Q 047146 296 MIAGLTHRGQFKEALDIFRRMQGLG-LKPD----DFTLVCVLNSCANIGWLELGKWVHTYLDKNH--I----NTDGFIGN 364 (608)
Q Consensus 296 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 364 (608)
....+...|++++|+..|++..+.- -.++ ..++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445566677777777777665531 0122 1334444444555555555555544433211 0 00122334
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQV----GIEPD-EVTFV 430 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~ 430 (608)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 444445555555555544443321 11 123444444444444444444444444331 11121 22344
Q ss_pred HHHHHHhccccHHHHHHHHHHhH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMS 453 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~ 453 (608)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.6e-12 Score=125.39 Aligned_cols=134 Identities=10% Similarity=0.024 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC----Chh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPD----EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP----QTE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 463 (608)
.+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++++.+...-.. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555666666666666666666544210 011 12566666777777777777777776655211111 145
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PL---VP----DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.+..+...|...|++++|.+.+++. .. .+ ...++..+...+...|++++|...++++.++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6677777888888888887777766 11 11 2346677778888888888888888888877554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-11 Score=107.11 Aligned_cols=166 Identities=10% Similarity=0.020 Sum_probs=141.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLS 434 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 434 (608)
++.+|..+...|.+.|++++|++.|++.. ..+...|..+...|.+.|++++|+..+++.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56678889999999999999999998765 246788999999999999999999999998885 44 4557777788
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 512 (608)
.+...++++.+...+...... .+.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 899999999999999998772 2345778889999999999999999999988 4455 67889999999999999999
Q ss_pred HHHHHHHHHhcCCCCC
Q 047146 513 AEIVMENLVRFEPEGD 528 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~ 528 (608)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-11 Score=119.68 Aligned_cols=134 Identities=10% Similarity=0.045 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQV----GIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 463 (608)
.+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4444555555566666666665555431 1001 1125566666667777777777777666542111111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PL---VPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.+..+...|...|++++|...+++. .. .++ ..++..+...+...|++++|...++++.++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5667777777777777777777665 11 111 346667778888888888888888888877554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-11 Score=121.71 Aligned_cols=225 Identities=9% Similarity=-0.032 Sum_probs=172.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CC-----hhHHH
Q 047146 331 VLNSCANIGWLELGKWVHTYLDKN----HINT-DGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RD-----VYSYT 395 (608)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 395 (608)
....+...|+++.|...+....+. +-.+ ...++..+..+|...|++++|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567899999999999998764 2111 346788899999999999999988887642 22 35788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccccHHHHHHHHHHhHhh---cCCCC-ChhHHH
Q 047146 396 AMIVGLAIHGKAWKALDIFSEMSQVGI-EPDE----VTFVGVLSACSHAGLVEEGCKHFLDMSRV---YNLQP-QTEHYG 466 (608)
Q Consensus 396 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~ 466 (608)
.+...|...|++++|+..+++..+... .++. .++..+...+...|++++|.+.+++..+. .+..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998875311 1121 37888899999999999999999998762 12313 466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 467 CMVDLFGRAGLIREALDLIKSM-PL-----VP-DAFVWGALLGACKIHAK---VELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
.+...|.+.|++++|.+.+++. .+ .| ....+..+...+...|+ +++|..++++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999887 11 22 22335666677888888 77777777766 233444557889999
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 047146 537 IYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 537 ~~~~~g~~~~A~~~~~~m~~ 556 (608)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999864
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=130.56 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCM 468 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 468 (608)
..+|+.+...|.+.|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|++.|+++.+ +.| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 46788888888889999999999998888 4665 56888888899999999999999998877 345 47788899
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHH
Q 047146 469 VDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 546 (608)
..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 5566 677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 047146 547 ALKLRKKMKE 556 (608)
Q Consensus 547 A~~~~~~m~~ 556 (608)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-11 Score=110.72 Aligned_cols=204 Identities=14% Similarity=0.030 Sum_probs=130.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMK---C-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVL 433 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll 433 (608)
++..+......|...|++++|...|++.. . ++...+..+..++...|++++|+..+++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 45566666777777777777777777554 2 5556666677777777777777777777776 35543 4666677
Q ss_pred HHHhccccHHHHHHHHHHhHhhcCCCC-Ch-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 047146 434 SACSHAGLVEEGCKHFLDMSRVYNLQP-QT-------EHYGCMVDLFGRAGLIREALDLIKSM-PLVPD---AFVWGALL 501 (608)
Q Consensus 434 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 501 (608)
.++...|++++|...+++..+. .| +. ..|..+...+...|++++|++.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 7777777777777777777662 23 23 34666666777777777777777766 55555 33555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGD 581 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (608)
..+.. .+...++++..+.+.+...|..+ .....+.+++|+..+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l------------------------ 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL------------------------ 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc------------------------
Confidence 55533 34455566666665554444333 234455679999999998753
Q ss_pred CCCCChhHHHHHHHHHHHH
Q 047146 582 KSHPKTLEIYKLLDEIMHQ 600 (608)
Q Consensus 582 ~~~p~~~~~~~~l~~~~~~ 600 (608)
.|+++++...|..+...
T Consensus 210 --~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 210 --SPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp --CTTCHHHHHHHHHHHTT
T ss_pred --CCCCHHHHHHHHHHHHh
Confidence 47777777777766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=7e-10 Score=106.79 Aligned_cols=218 Identities=9% Similarity=-0.027 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047146 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCA-------NIGWL-------ELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372 (608)
Q Consensus 307 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 372 (608)
++|...|++..... +-+...|..+...+. ..|+. ++|..+++..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665531 223334444444333 23443 5555555555552122344455666666666
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccccHHHHHH
Q 047146 373 CGRIDQAFGVFRSMKC--R-DVY-SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS-HAGLVEEGCK 447 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~ 447 (608)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665542 2 232 56666666666777777777777766642 222333333222211 2567777777
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-P---LVP--DAFVWGALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
+|+...+. .+.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776652 1224566666677777777777777777666 2 233 34566666666666777777777777777
Q ss_pred hcCCCCC
Q 047146 522 RFEPEGD 528 (608)
Q Consensus 522 ~~~p~~~ 528 (608)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7766654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=123.68 Aligned_cols=236 Identities=11% Similarity=0.060 Sum_probs=118.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHc------C-
Q 047146 290 VVSWNSMIAGLTHRGQFKEALDIFRRMQGL-------GLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKN------H- 355 (608)
Q Consensus 290 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 355 (608)
..++..+...+...|++++|+..|+++.+. ..+.....+..+...+...|+++.|...+..+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788888888999999999999888763 11222344555555566666666666666555432 1
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 047146 356 INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV------GIEPD-EVT 428 (608)
Q Consensus 356 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~ 428 (608)
.+....++..+... |...|++++|...++++.+. +-.|+ ...
T Consensus 107 ~~~~~~~~~~l~~~-------------------------------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVL-------------------------------YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHH-------------------------------HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHH-------------------------------HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 11123334444444 44444555544444444432 11121 224
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhHhhc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CCC
Q 047146 429 FVGVLSACSHAGLVEEGCKHFLDMSRVY-----NLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-P---------LVP 492 (608)
Q Consensus 429 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p 492 (608)
+..+...+...|++++|.++++++.+.. +..| ....+..+...|...|++++|.+.++++ . ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4445555555555555555555554410 1112 2334555555555556666555555544 1 011
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 493 D-------AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 493 ~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
. ...+..+...+...+.+.++...++......|....++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 111112222233444455555566666666666667777788888888888888888777654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-10 Score=110.12 Aligned_cols=214 Identities=11% Similarity=0.012 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhH-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYA-------KCGRI-------DQAFGVFRSMKC---R-DVYSYTAMIVGLAI 403 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 403 (608)
+.|..+++.++... +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777788777653 456777777777765 35886 899999997653 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH-hcCCHHH
Q 047146 404 HGKAWKALDIFSEMSQVGIEPDE-V-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG-RAGLIRE 480 (608)
Q Consensus 404 ~~~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 480 (608)
.|++++|..+|++..+ +.|+. . .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 56654 3 7889999999999999999999999872 2334555554444432 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhCCChHHHHHHHHHH
Q 047146 481 ALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF---EPE-GDGAYILMTNIYSSKNRWKEALKLRKKM 554 (608)
Q Consensus 481 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 554 (608)
|.++|++. ...| +...|..++..+...|++++|..+++++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 3334 6789999999999999999999999999996 443 5568999999999999999999999999
Q ss_pred HhCCCc
Q 047146 555 KERKVK 560 (608)
Q Consensus 555 ~~~~~~ 560 (608)
.+..+.
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 876654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-11 Score=122.47 Aligned_cols=178 Identities=10% Similarity=0.025 Sum_probs=156.6
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHH
Q 047146 375 RIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKA-WKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 375 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
+++++...++... ..+...|..+...+...|++ ++|+..|++..+. .|+ ...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666543 34678899999999999999 9999999999985 554 679999999999999999999999
Q ss_pred HHhHhhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------CCH
Q 047146 450 LDMSRVYNLQPQTEHYGCMVDLFGRA---------GLIREALDLIKSM-PLVP-DAFVWGALLGACKIH--------AKV 510 (608)
Q Consensus 450 ~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~ 510 (608)
+++.+ +.|+...+..+..+|... |++++|++.+++. ...| +...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99976 468888899999999999 9999999999998 4455 678999999999988 999
Q ss_pred HHHHHHHHHHHhcCC---CCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 511 ELAEIVMENLVRFEP---EGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 511 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
++|...++++.+++| .++..|..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 89999999999999999999999999999753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-11 Score=104.59 Aligned_cols=161 Identities=14% Similarity=0.021 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR 474 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 474 (608)
..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 333444444444444444444444321 113334444555555555555555555555441 12234455555556666
Q ss_pred cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 047146 475 AGLIREALDLIKSM-PL-VPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRK 552 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 552 (608)
.|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|+++..+..++.+|...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666555 22 23556666677777777778888888887777777777777788888888888888888887
Q ss_pred HHHhCC
Q 047146 553 KMKERK 558 (608)
Q Consensus 553 ~m~~~~ 558 (608)
+..+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-09 Score=105.65 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=102.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKC-------R----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE--P--DEVT 428 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~ 428 (608)
..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3445555566666666555554321 1 1123444555666666666666666665543211 1 1234
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHH
Q 047146 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYG-----CMVDLFGRAGLIREALDLIKSM-PLVPD-----AFVW 497 (608)
Q Consensus 429 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~ 497 (608)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55555666666777777766666654211111111111 2233355667777777776666 21221 2234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+...+...|++++|...++++.+..+.. ...+..++.+|...|+.++|...+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555566666777777777777666543221 12455666667777777777777666643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=118.80 Aligned_cols=238 Identities=12% Similarity=0.022 Sum_probs=147.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCC--------C---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPV--------K---NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL------G 320 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 320 (608)
+..++..+...|...|++++|..+|+++.. . ...++..+...|...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467889999999999999999999988753 2 2346888899999999999999999998764 2
Q ss_pred CCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChh
Q 047146 321 LKP-DDFTLVCVLNSCANIGWLELGKWVHTYLDKN------HI-NTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVY 392 (608)
Q Consensus 321 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 392 (608)
-.| ...++..+...+...|+++.|...+..+.+. +. +....+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------------------------ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ------------------------------ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH------------------------------
Confidence 222 3457778888899999999999999877653 11 112233
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhc------CCC
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQV------GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVY------NLQ 459 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~ 459 (608)
+..+...+...|++++|+.+++++.+. +..|+ ..++..+...+...|++++|...++++.+.. ...
T Consensus 156 -~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 156 -LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344444444555555555555544432 11222 2355556666666666666666666665410 111
Q ss_pred CC-------hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 460 PQ-------TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 460 p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
+. ...+..+...+...+.+.+|...++.. ...| +..++..+..+|...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 112222333344445555566666665 2334 4567888889999999999999999999888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-10 Score=103.25 Aligned_cols=204 Identities=12% Similarity=0.051 Sum_probs=160.9
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIV 399 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 399 (608)
.|...+......+...|++++|...+..+.+...+++...+..+..+|...|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999887656777777799999999999999999998763 35578899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC---hhHHHHH
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPD-E-------VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ---TEHYGCM 468 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 468 (608)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|.+.|+++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 554 4 3577778888999999999999999976 4565 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 469 VDLFGRAGLIREALDLIKSM-P-LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
..+|...|+. .++++ . ...+...+.... ....+.+++|...++++.++.|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888766543 22332 1 122444444443 34567799999999999999999987777766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-10 Score=113.89 Aligned_cols=193 Identities=10% Similarity=0.035 Sum_probs=110.3
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhhcCC-----C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHH
Q 047146 363 GNALVDMYAKCGRIDQAFGVFRSMKC-----R-----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV----GIEP-DEV 427 (608)
Q Consensus 363 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~ 427 (608)
+..+..+|...|+++.|...+++..+ + ...+++.+...|...|++++|++.|++..+. +-.+ ...
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555555555554443321 1 1235556666666777777777766665542 1111 123
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhc---CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVY---NLQPQTEHYGCMVDLFGRAGLIREALDLIKSM----PL--VPD-AFVW 497 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~ 497 (608)
++..+..++...|++++|...+++..+.. +.+....++..+...|.+.|++++|...+++. .. .|. ...+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666667777777777777777765511 12223456667777777777777777777665 11 122 2334
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 498 GALLGACKIHAK---VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 498 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+...+...++ +++|...+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455555666 55666555542 12233334666788888888888888888877753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-10 Score=96.57 Aligned_cols=166 Identities=12% Similarity=-0.005 Sum_probs=142.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456678888999999999999998874 366788899999999999999999999998852 335678888899999
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEI 515 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 515 (608)
..|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999873 3446788899999999999999999999987 3334 67889999999999999999999
Q ss_pred HHHHHHhcCCCCCc
Q 047146 516 VMENLVRFEPEGDG 529 (608)
Q Consensus 516 ~~~~~~~~~p~~~~ 529 (608)
.++++.+..|+++.
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 99999999888764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-09 Score=106.69 Aligned_cols=226 Identities=10% Similarity=0.018 Sum_probs=161.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCC----hHHHHHHHHHHhccCChHHHHHHHHHHHHcC--C---C-CchhHHHH
Q 047146 297 IAGLTHRGQFKEALDIFRRMQGLGL-KPD----DFTLVCVLNSCANIGWLELGKWVHTYLDKNH--I---N-TDGFIGNA 365 (608)
Q Consensus 297 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~ 365 (608)
...+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+....+.. . . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777655310 122 2355566666777777777777777665421 1 1 12446677
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQ-----VGIEPDEVTFVG 431 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 431 (608)
+..+|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 88888888999888888876542 22 34677888889999999999999998876 32 223567888
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhcCCCC---ChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 047146 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQP---QTEHYGCMVDLFGRAGL---IREALDLIKSMPLVPD-AFVWGALLGAC 504 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 504 (608)
+...+.+.|++++|...+++..+...-.+ ....+..+...|...|+ +.+|+..+++.+..|+ ...+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 88999999999999999999887432222 23456677777888888 8999999998754443 34666788889
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 047146 505 KIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~ 523 (608)
...|++++|...++++.+.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-08 Score=97.70 Aligned_cols=258 Identities=11% Similarity=-0.025 Sum_probs=118.7
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHh----HHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCch----HHHHHHHH
Q 047146 196 AYVKMDYPTEAILSFFDMCQANLRPDGM----ILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDV----FIHNALID 267 (608)
Q Consensus 196 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~----~~~~~li~ 267 (608)
.+...|++++|...+++........+.. ++..+...+...|+++.|...++...+..... ++. .++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHH
Confidence 3344555555555555544432111111 23333344445555555555555554431111 011 22344445
Q ss_pred HHHhcCChHHHHHHHccCC-------C---C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--ChHHHHHHH
Q 047146 268 MYLKCGNIPSARKVFDEMP-------V---K-NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLK--P--DDFTLVCVL 332 (608)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 332 (608)
.+...|++++|...+++.. . + ....+..+...+...|++++|...+++.....-. + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 5555555555555554432 1 1 1123344555556666666666666655442111 1 112344444
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCc--hhHHH----HHHHHhHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHH
Q 047146 333 NSCANIGWLELGKWVHTYLDKNHINTD--GFIGN----ALVDMYAKCGRIDQAFGVFRSMKCRD-------VYSYTAMIV 399 (608)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~ 399 (608)
..+...|+++.|...++........++ ..... ..+..+...|++++|...+++...++ ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 445555555555555555443211111 11111 22334556677777777776665422 113445556
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 400 GLAIHGKAWKALDIFSEMSQV----GIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+...|++++|...+++.... |..++. .++..+..++...|+.++|...+.....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666667777766666665432 111111 1334444455555666666655555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=8.5e-10 Score=104.37 Aligned_cols=221 Identities=12% Similarity=0.085 Sum_probs=148.9
Q ss_pred hccCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-------C----ChhHHHHH
Q 047146 336 ANIGWLELGKWVHTYLDKN-------HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-------R----DVYSYTAM 397 (608)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 397 (608)
...|+++.|...++...+. ..+....++..+..+|...|++++|...|++... + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777666542 2233466778888899999999999988886641 1 24578888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhc-----CCCC-ChhH
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQV------GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVY-----NLQP-QTEH 464 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 464 (608)
...|...|++++|+..+++.... .-.|+ ..++..+...+...|++++|...++++.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999988764 11233 3577888888999999999999999887721 1123 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C---------CCC-CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCC
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-P---------LVP-DAFVWGALLGACKIHAK------VELAEIVMENLVRFEPEG 527 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~ 527 (608)
+..+..+|.+.|++++|.+.++++ . ..+ ....|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788889999999999999888776 1 122 22233333333333222 223333333322233445
Q ss_pred CchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 528 DGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 528 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...+..++.+|.+.|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56889999999999999999999999875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-08 Score=94.06 Aligned_cols=238 Identities=12% Similarity=0.031 Sum_probs=101.8
Q ss_pred HHhcCChHHHHHHHccCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHH
Q 047146 269 YLKCGNIPSARKVFDEMPVKNVV-SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWV 347 (608)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 347 (608)
..-.|++..++.-...+.+.+.. .-.-+.++|...|+++.. ..-.|....+..+.. |...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HHHH
Confidence 34467777776655555432222 222344666666665531 011222222222222 22211 3344
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI 422 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 422 (608)
++.+...+ .++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 44433333 22233333445555555555555555554421 1233444445555555555555555555554 2
Q ss_pred CC-----CHHHHHHHHHH--Hhccc--cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC--
Q 047146 423 EP-----DEVTFVGVLSA--CSHAG--LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL-- 490 (608)
Q Consensus 423 ~p-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 490 (608)
.| +..+...+..+ ....| +.++|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44 23333344333 11122 455555555555331 222111122222445555555555554433 11
Q ss_pred --------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 491 --------VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 491 --------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.| |+.++..++......|+ +|.++++++.+..|+++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 12 33333334333333444 44555555555555554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.6e-09 Score=96.13 Aligned_cols=204 Identities=11% Similarity=0.030 Sum_probs=129.0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-D---VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI-EPD-EVTFV 430 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~ 430 (608)
+...+-.+...+.+.|++++|...|+.+.. | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555566666677777777777776653 2 2 34566666667777777777777777666311 112 23455
Q ss_pred HHHHHHhc--------cccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 047146 431 GVLSACSH--------AGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALL 501 (608)
Q Consensus 431 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 501 (608)
.+..++.. .|++++|...|+++.+. .|+ ......+.......+.. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555655 67777777777766653 222 22222211111000000 11245667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhC----------CChHHHHHHHHHHHhCCCccCCceeEE
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSK----------NRWKEALKLRKKMKERKVKKTPGCSLV 568 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 568 (608)
..+...|++++|...++++++..|+++ ..+..++.+|... |++++|...++++.+..+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 889999999999999999999999854 4788999999877 899999999999986432
Q ss_pred EECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhh
Q 047146 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603 (608)
Q Consensus 569 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 603 (608)
.+|........+.++...+++
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 234445667777777766654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.2e-10 Score=117.75 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=138.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 047146 359 DGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLS 434 (608)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 434 (608)
+...++.|..+|.+.|++++|++.|++..+ .+...|+.+..+|.+.|++++|+..|++..+ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466778888999999999999999987652 4578899999999999999999999999988 4665 568999999
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVE 511 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 511 (608)
++...|++++|++.|+++.+ +.| +...|..+..+|.+.|++++|++.|++. .+.| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 345 5788999999999999999999999987 5566 5778889999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 047146 512 LAEIVMENLVRFEP 525 (608)
Q Consensus 512 ~a~~~~~~~~~~~p 525 (608)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-10 Score=96.41 Aligned_cols=120 Identities=11% Similarity=-0.013 Sum_probs=73.4
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAK 509 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 509 (608)
...+...|++++|+..+..... ..| +...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3344555666666666665543 233 2334455666666777777777766665 4444 55666666666777777
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHH-HHHHH
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKL-RKKMK 555 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~ 555 (608)
+++|...++++++++|+++.+|..++.+|.+.|++++|.+. +++..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777777777777777776777777777777776655543 35554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-09 Score=100.51 Aligned_cols=216 Identities=11% Similarity=-0.022 Sum_probs=114.1
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-hHHHHHHHHHHhccCChHHHHHHH
Q 047146 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGL----GLKPD-DFTLVCVLNSCANIGWLELGKWVH 348 (608)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 348 (608)
++++|...|++ ....|...|++++|+..|.+..+. |-+++ ..++..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36777666544 366677778888888777766542 11111 234444444444444554444444
Q ss_pred HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC--
Q 047146 349 TYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIH-GKAWKALDIFSEMSQVGIEPD-- 425 (608)
Q Consensus 349 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~-- 425 (608)
....+. +...|+...+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~ 152 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQ 152 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTT
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCC
Confidence 433221 1111222111 23455666666664 7777777777766552 111
Q ss_pred -----HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 047146 426 -----EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT-----EHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA 494 (608)
Q Consensus 426 -----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 494 (608)
..++..+...+...|++++|...|+++.+...-.+.. ..|..+..++...|++++|+..+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2356666667777777777777777776521111111 14556666677777777777777766 444432
Q ss_pred H------HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCC
Q 047146 495 F------VWGALLGACK--IHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 495 ~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
. .+..++.++. ..+++++|...++++.+++|...
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 1 2333444443 34556666666666666655443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-08 Score=92.37 Aligned_cols=181 Identities=13% Similarity=0.017 Sum_probs=117.9
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHH
Q 047146 361 FIGNALVDMYAKCGRIDQAFGVFRSMKC--RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV----TFV 430 (608)
Q Consensus 361 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~ 430 (608)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444566677778888888888887652 32 245666777788888888888888887774 44321 333
Q ss_pred HHHHHHhc------------------cccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 047146 431 GVLSACSH------------------AGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSMPLV 491 (608)
Q Consensus 431 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 491 (608)
.+..++.. .|+.++|...|+.+.+. .|+ ...+.+...... .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH---------
Confidence 34444433 35566666666666542 222 222211111000 00000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD---GAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
......+...+...|++++|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112455678899999999999999999999986 568999999999999999999999998876544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.7e-09 Score=85.60 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=74.8
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL-VPDAFVWGALLGACKIHA 508 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~ 508 (608)
.+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.+.++++ .. ..+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444445555555554444431 1123344444555555555555555555554 11 224556666666777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
++++|...++++.+..|.++..+..++.+|.+.|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777777777777653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-09 Score=101.55 Aligned_cols=201 Identities=10% Similarity=-0.027 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGKAWKA 410 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A 410 (608)
+++.|...+..+ ...|...|++++|...|.+... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777654 4567788999999888876542 12 46788899999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-ccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHH
Q 047146 411 LDIFSEMSQVGI---EPD--EVTFVGVLSACSHA-GLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 411 ~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 480 (608)
+..+++..+... .+. ..++..+...+... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998875311 111 34788888899996 9999999999998773211111 3568889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hCCCh
Q 047146 481 ALDLIKSM-PLVPD---A-----FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA-----YILMTNIYS--SKNRW 544 (608)
Q Consensus 481 A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 544 (608)
|+..+++. ...|+ . ..|..+..++...|++++|...+++++++.|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 33332 1 156777788899999999999999999999986543 445666665 45778
Q ss_pred HHHHHHHHHHH
Q 047146 545 KEALKLRKKMK 555 (608)
Q Consensus 545 ~~A~~~~~~m~ 555 (608)
++|+..++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888886553
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-08 Score=92.16 Aligned_cols=162 Identities=10% Similarity=0.003 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-----ChhHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-----QTEHY 465 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~ 465 (608)
.++..+..++...|++++|++++.+....|..++ ...+..++..+.+.|+.+.|.+.++.|.+ ..| +..+.
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l 177 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHH
Confidence 3334444555555555555555555444322122 23444445555555555555555555543 233 12333
Q ss_pred HHHHHHH--Hh--cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCCCch
Q 047146 466 GCMVDLF--GR--AGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRF----------EPEGDGA 530 (608)
Q Consensus 466 ~~l~~~~--~~--~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~p~~~~~ 530 (608)
..|+.++ .. .++..+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+. +|+++.+
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 3333331 11 22555555555555 22333222223333455555555555555544443 2445555
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 531 YILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 531 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+..++.+....|+ +|.++++++.+..
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5444444444454 4555555555433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-08 Score=95.64 Aligned_cols=202 Identities=11% Similarity=-0.033 Sum_probs=143.9
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CC----hhHH
Q 047146 323 PDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RD----VYSY 394 (608)
Q Consensus 323 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~ 394 (608)
.+...+......+...|+++.|...+..+++..... ....+..+..+|.+.|++++|...|++..+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 455667777888899999999999999998875322 156778899999999999999999998763 31 3467
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHH
Q 047146 395 TAMIVGLAI--------HGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHY 465 (608)
Q Consensus 395 ~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 465 (608)
..+..++.. .|++++|+..|+++.+. .|+.. ....+.. +...... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH-----HHHHH
Confidence 777888888 99999999999999984 56542 2222111 1111110 01125
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCCc-
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIH----------AKVELAEIVMENLVRFEPEGDG- 529 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~- 529 (608)
..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778888999999999988887 33343 34666677777755 8999999999999999999863
Q ss_pred --hHHHHHHHHHhCCChH
Q 047146 530 --AYILMTNIYSSKNRWK 545 (608)
Q Consensus 530 --~~~~l~~~~~~~g~~~ 545 (608)
++..+..++.+.++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3444555554444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-10 Score=93.90 Aligned_cols=139 Identities=8% Similarity=-0.024 Sum_probs=102.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCC
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGL 477 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 477 (608)
.+...|++++|+..+++... ..|+. ..+..+...|.+.|++++|++.|+++.+ +.| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 34455666777777776654 23432 3555667777777888888877777766 234 56777778888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 478 IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEI-VMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
+++|+..|++. .+.| +...|..+...+.+.|++++|.. .++++++++|+++.+|.....++.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888776 4556 57788888889999999876655 5699999999999999999999888875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=95.59 Aligned_cols=164 Identities=13% Similarity=0.048 Sum_probs=101.7
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKC-------R----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQV------GI 422 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~ 422 (608)
..++..+..+|...|++++|.+.|++... + ....+..+...|...|++++|+..+++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455666666666776666666665431 1 2356677777888888888888888887663 11
Q ss_pred CCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhc------CCCC-ChhHHHHHHHHHHhcC------CHHHHHHHHHhC
Q 047146 423 EPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVY------NLQP-QTEHYGCMVDLFGRAG------LIREALDLIKSM 488 (608)
Q Consensus 423 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~ 488 (608)
.|+ ..++..+...+...|++++|...++++.+.. ...+ ....|..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 3477788888889999999999888887621 1122 2334444444443322 344555555555
Q ss_pred C-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 489 P-LVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 489 ~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
. ..| ...++..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 223 3457788889999999999999999998765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=96.67 Aligned_cols=175 Identities=9% Similarity=-0.018 Sum_probs=139.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 376 IDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+.....+......+...+..+...+.+.|++++|...|++..+. .| +...+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334445555555455566777888889999999999999999884 56 456888888899999999999999998866
Q ss_pred hcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--Cc
Q 047146 455 VYNLQPQTEHYGC-MVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG--DG 529 (608)
Q Consensus 455 ~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 529 (608)
..|+...... ....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3455443332 333466777888888888877 4455 67889999999999999999999999999999998 77
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
.+..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999999988764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-08 Score=81.41 Aligned_cols=132 Identities=13% Similarity=0.162 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLF 472 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 472 (608)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677778888888888888888887753 235567777788888888888888888888762 233566778888888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 473 GRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8899999998888877 3333 67788888888999999999999999998888763
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-09 Score=113.46 Aligned_cols=164 Identities=10% Similarity=-0.063 Sum_probs=84.5
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 047146 336 ANIGWLELGKWVHTYLD--------KNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIH 404 (608)
Q Consensus 336 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 404 (608)
...|++++|.+.++.+. +. .+.+...+..+..+|...|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45555666666655554 21 123344455555555555666666655555442 2445555555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREAL 482 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 482 (608)
|++++|+..|++..+. .|+ ...+..+..++...|++++ .+.|+++.+ ..| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666555552 332 3355555555555555555 555555544 123 3445555555555555565555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHH
Q 047146 483 DLIKSM-PLVPD-AFVWGALLGACKI 506 (608)
Q Consensus 483 ~~~~~~-~~~p~-~~~~~~l~~~~~~ 506 (608)
+.|+++ ...|+ ...|..+..++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHc
Confidence 555555 44443 2344444444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=7.3e-09 Score=87.23 Aligned_cols=102 Identities=9% Similarity=-0.069 Sum_probs=90.6
Q ss_pred CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 047146 457 NLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYIL 533 (608)
Q Consensus 457 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 533 (608)
.+.| +...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++.+++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4556 4567888889999999999999999988 4555 78899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 534 MTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
++.+|.+.|++++|+..|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-08 Score=82.79 Aligned_cols=94 Identities=11% Similarity=0.088 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666666666666666666665 3334 556666666677777777777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHh
Q 047146 541 KNRWKEALKLRKKMKE 556 (608)
Q Consensus 541 ~g~~~~A~~~~~~m~~ 556 (608)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777776653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.8e-09 Score=89.56 Aligned_cols=155 Identities=10% Similarity=0.014 Sum_probs=92.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH-HHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL-FGR 474 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 474 (608)
+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++.+... .|+...+..+... +..
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 334444455555555555544442 33 2234444455555555555555555554431 1222221111111 111
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhCCChHHHHHH
Q 047146 475 AGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG--DGAYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 475 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 550 (608)
.+...+|++.+++. ...| +...+..+...+...|++++|...++++++..|+. +..+..++.+|...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11222345555554 3345 57788888888999999999999999999998875 45888999999999999999999
Q ss_pred HHHHHh
Q 047146 551 RKKMKE 556 (608)
Q Consensus 551 ~~~m~~ 556 (608)
+++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-08 Score=104.59 Aligned_cols=159 Identities=9% Similarity=0.015 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHH
Q 047146 373 CGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
.|++++|.+.|++..+ .+...|..+...+...|++++|++.+++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998764 35688999999999999999999999999984 55 466888999999999999999999
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhc
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIH---AKVELAEIVMENLVRF 523 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 523 (608)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 2335788999999999999999999999988 4445 677888899999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 047146 524 EPEGDGAYILMT 535 (608)
Q Consensus 524 ~p~~~~~~~~l~ 535 (608)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=5.1e-06 Score=84.86 Aligned_cols=203 Identities=11% Similarity=-0.073 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH-HHHHhh
Q 047146 307 KEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA-FGVFRS 385 (608)
Q Consensus 307 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~ 385 (608)
+.+..+|+++.... +.+...|...+.-+...|+.+.|..+++...+. +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34667888877753 445666777777777888899999999988887 334333322 2222111111 112221
Q ss_pred cC------------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHh
Q 047146 386 MK------------CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG-LVEEGCKHFLDM 452 (608)
Q Consensus 386 ~~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~ 452 (608)
.. ......|...+....+.+..+.|..+|++. .. ..++...|......-...+ +.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 011245777777777788899999999998 32 1234445543332222233 699999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047146 453 SRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVR 522 (608)
Q Consensus 453 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 522 (608)
.+.++ .+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88532 234566778888889999999999999983 3577888888888888999999998888874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-07 Score=82.70 Aligned_cols=162 Identities=9% Similarity=-0.108 Sum_probs=129.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----cHHHHHHHHHHhHhhcCCCCChhH
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAG----LVEEGCKHFLDMSRVYNLQPQTEH 464 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 464 (608)
.+...+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|.++|++..+ ..+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 466777778888888888888888888888764 55667777777777 6 89999999998876 235667
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHH
Q 047146 465 YGCMVDLFGR----AGLIREALDLIKSM-PLVPD---AFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYI 532 (608)
Q Consensus 465 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 532 (608)
+..|...|.. .+++++|+++|++. ...|. +..+..|...|.. .+++++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888877 78999999999887 44443 6788888888888 88999999999999888 66667889
Q ss_pred HHHHHHHhC-C-----ChHHHHHHHHHHHhCCC
Q 047146 533 LMTNIYSSK-N-----RWKEALKLRKKMKERKV 559 (608)
Q Consensus 533 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 559 (608)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999887664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-07 Score=84.61 Aligned_cols=185 Identities=12% Similarity=-0.014 Sum_probs=132.7
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CCh----hHHH
Q 047146 324 DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT--DGFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDV----YSYT 395 (608)
Q Consensus 324 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~ 395 (608)
+...+..+...+...|+++.|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666777889999999999999998865322 245677889999999999999999998763 332 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHhHhhc
Q 047146 396 AMIVGLAI------------------HGKAWKALDIFSEMSQVGIEPDEV-TFVGVLSACSHAGLVEEGCKHFLDMSRVY 456 (608)
Q Consensus 396 ~li~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 456 (608)
.+..++.. .|++++|+..|+++.+. .|+.. ....... .+. +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~~------~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LVF------LKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HHH------HHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HHH------HHHHHHH--
Confidence 55555554 57899999999999984 66653 2222111 110 1111111
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 457 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
....+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|++++|...++.+....|++..
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2235678889999999999999987 44453 246778889999999999999999999998888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-07 Score=90.97 Aligned_cols=220 Identities=11% Similarity=0.028 Sum_probs=149.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047146 303 RGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382 (608)
Q Consensus 303 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 382 (608)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466777887777665531 111 0 11135666666665543 4566677888877777
Q ss_pred HhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccccHHHHHHH
Q 047146 383 FRSMKC-----RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQVG---IEPD--EVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 383 ~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...+.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 765542 11 3467788888999999999999998876531 1222 2477788888888 999999999
Q ss_pred HHHhHhhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 047146 449 FLDMSRVYNLQP----QTEHYGCMVDLFGRAGLIREALDLIKSM-PL---VPD----AFVWGALLGACKIHAKVELAEIV 516 (608)
Q Consensus 449 ~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~ 516 (608)
|++..+...-.. ...++..+...|.+.|++++|++.|++. .+ .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998876321111 1467888999999999999999999887 21 122 23566666777888999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHhCCChHHHHHH
Q 047146 517 MENLVRFEPEGDGA-----YILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 517 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 550 (608)
+++++ ..|..... ...++..+ ..|+.+.+..+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88876533 34555555 56776666553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-07 Score=90.02 Aligned_cols=131 Identities=11% Similarity=-0.025 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALL- 501 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~- 501 (608)
+...+..+...+...|++++|...|+++.+. .| +...+..+..++.+.|++++|...++++ ...|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3456777888899999999999999999873 45 5788899999999999999999999998 5567765444433
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..+...++.+.|...++++.+..|+++..+..++.+|...|++++|...++++.+..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 336677888889999999999999999999999999999999999999999998644
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-07 Score=85.57 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=102.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCC--C-ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKC--R-DVYSYTA----------------MIVGLAIHGKAWKALDIFSEMSQVGIEP 424 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~~~~~~A~~~~~~m~~~g~~p 424 (608)
......+...|++++|...|++... | +...|.. +..+|...|++++|+..|++..+. .|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence 3344566777888888888887653 2 3345555 677777888888888888887773 45
Q ss_pred -CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHH
Q 047146 425 -DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGL--IREALDLIKSMPLVPDA--FVWG 498 (608)
Q Consensus 425 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~ 498 (608)
+...+..+..++...|++++|...|+++.+ +.| +...+..+..+|...|+ .+.+...++... .|++ ..+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 445777777778888888888888887776 234 46677777777665543 334455555552 3333 2333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
....++...|++++|+..+++++++.|++
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 34455566777888888888888877764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-07 Score=99.60 Aligned_cols=166 Identities=11% Similarity=-0.055 Sum_probs=90.2
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047146 301 THRGQFKEALDIFRRMQ--------GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAK 372 (608)
Q Consensus 301 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 372 (608)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666655 221 2233445555555666666666666666655543 2334455555566666
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHH
Q 047146 373 CGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKH 448 (608)
Q Consensus 373 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 448 (608)
.|++++|.+.|++..+ .+...|..+..+|.+.|++++ +..|++..+. .| +...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665431 244555666666666666666 6666666552 33 334555556666666666666666
Q ss_pred HHHhHhhcCCCCC-hhHHHHHHHHHHh
Q 047146 449 FLDMSRVYNLQPQ-TEHYGCMVDLFGR 474 (608)
Q Consensus 449 ~~~~~~~~~~~p~-~~~~~~l~~~~~~ 474 (608)
|+++.+ +.|+ ...+..+..++..
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC-
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHc
Confidence 665543 3343 3445555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=83.76 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=82.4
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 458 LQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 458 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344 4566777788888888888888888877 3444 677888888888899999999999999999999998899999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhC
Q 047146 535 TNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 535 ~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+.+|...|++++|.+.+++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999888653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.1e-08 Score=79.46 Aligned_cols=114 Identities=12% Similarity=0.025 Sum_probs=93.7
Q ss_pred CCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047146 422 IEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWG 498 (608)
Q Consensus 422 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 498 (608)
+.|+. ..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 45543 36777788888889999999999888772 2335778888889999999999999988887 4445 677899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 537 (608)
.+..++...|++++|...++++++++|+++.++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999888777654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-08 Score=85.79 Aligned_cols=154 Identities=12% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccccHHHHHHHHHHhHhhcCCCC
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVG----------------VLSACSHAGLVEEGCKHFLDMSRVYNLQP 460 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 460 (608)
...+...|++++|+..|++..+ ..|+. ..+.. +..++...|++++|...|++..+. .|
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p 85 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---AP 85 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC
Confidence 3344555555555555555555 23432 23434 455555555555555555555541 23
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 461 -QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAK--VELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 461 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
+...+..+..+|...|++++|++.|++. ...| +...|..+...+...|+ .+.+...++++....|.. ..+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHHH
Confidence 3455555555555555555555555555 3333 34455555544443332 222333333332211111 1233445
Q ss_pred HHHHhCCChHHHHHHHHHHHhC
Q 047146 536 NIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.++...|++++|+..+++..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 5555555555555555555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=99.81 Aligned_cols=145 Identities=9% Similarity=-0.064 Sum_probs=80.4
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 047146 339 GWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFS 415 (608)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 415 (608)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 23455566666667777777777777765542 245566666666777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 047146 416 EMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA---GLIREALDLIKSM 488 (608)
Q Consensus 416 ~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 488 (608)
+..+. .| +...+..+..++...|++++|.+.++++.+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 76663 33 3446666666677777777777777766652 122455666666666666 6777777666665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.8e-08 Score=92.69 Aligned_cols=197 Identities=11% Similarity=-0.010 Sum_probs=149.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 047146 337 NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSE 416 (608)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 416 (608)
..|++++|.+++....+.... . .+...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888877654221 0 11115888998888765 35678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCC--CC--ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047146 417 MSQV----GIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL--QP--QTEHYGCMVDLFGRAGLIREALDLIKS 487 (608)
Q Consensus 417 m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (608)
..+. |-.+. ..+|..+...|...|++++|...|++..+...- .+ ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 11111 247888888999999999999999988763211 11 14577888999988 999999999988
Q ss_pred C-CCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhCCChHHHHHHHHH
Q 047146 488 M-PLVP---D----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD------GAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 488 ~-~~~p---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
. .+.| + ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 2111 1 45788888999999999999999999999866543 2677788889999999999999999
Q ss_pred HH
Q 047146 554 MK 555 (608)
Q Consensus 554 m~ 555 (608)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-07 Score=83.46 Aligned_cols=131 Identities=15% Similarity=-0.038 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 471 (608)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++...+. .+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34556677788888888888888876 3567778888888888888888888888888773 23356778888888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 472 FGRAGLIREALDLIKSM-PLVP-----------------DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
|...|++++|++.+++. ...| ....+..+..++...|++++|...++++.+..|++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 88888888888888876 2222 225777777888888888888888888888888763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.5e-06 Score=81.10 Aligned_cols=161 Identities=10% Similarity=-0.020 Sum_probs=118.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHH
Q 047146 396 AMIVGLAIHGKAWKALDIFSEMSQVGI-EPDEV----TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYG 466 (608)
Q Consensus 396 ~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 466 (608)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...+..+.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999988876421 22211 2334566677778999999999988772122223 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchH
Q 047146 467 CMVDLFGRAGLIREALDLIKSM-----PL---VP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAY 531 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 531 (608)
.+...|...|++++|+..++++ .. .+ ...++..+...|...|++++|...++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8899999999999998888876 11 11 22377788899999999999999999999875332 4579
Q ss_pred HHHHHHHHhCCC-hHHHHHHHHHHHh
Q 047146 532 ILMTNIYSSKNR-WKEALKLRKKMKE 556 (608)
Q Consensus 532 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 556 (608)
..++.+|.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988853
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-06 Score=80.55 Aligned_cols=224 Identities=11% Similarity=0.016 Sum_probs=99.1
Q ss_pred hcCC-hhHHHHHHHHHHhCCCCCChHH-HHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHh----Hhc
Q 047146 302 HRGQ-FKEALDIFRRMQGLGLKPDDFT-LVCVLNSCANIG--WLELGKWVHTYLDKNHINTDGFIGNALVDMY----AKC 373 (608)
Q Consensus 302 ~~g~-~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 373 (608)
+.|. .++|++++++++.. .|+..| ++.--..+...+ +++++...++.++..+.+ +..+++.--.++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 4444 45788888877774 454433 333334444444 566666666655554422 222222222222 222
Q ss_pred ---CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc----
Q 047146 374 ---GRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAW--KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL---- 441 (608)
Q Consensus 374 ---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 441 (608)
+++++++++++.+. .+|..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 45555555555443 234445555555555555554 5555555555532 1133344444444444443
Q ss_pred --HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHH
Q 047146 442 --VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE-ALDLIKSM-PL----VPDAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 442 --~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a 513 (608)
++++.+.+..+... -+-|...|+.+...+.+.|+..+ +.++.++. .. ..++..+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 44444444444431 11234444444444444444222 22333333 11 11333444444444444444444
Q ss_pred HHHHHHHHh-cCCCCCchH
Q 047146 514 EIVMENLVR-FEPEGDGAY 531 (608)
Q Consensus 514 ~~~~~~~~~-~~p~~~~~~ 531 (608)
.++++.+.+ .+|.....|
T Consensus 278 ~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHhccChHHHHHH
Confidence 444444443 344443333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=7e-07 Score=84.93 Aligned_cols=163 Identities=9% Similarity=-0.015 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccccHHHHHHHHHHhHhhcCC--CCC--hh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDE-----VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL--QPQ--TE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 463 (608)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+.+..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667788899999999999888774322111 12334555677888999999999888752111 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----C
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM----PLVPD-----AFVWGALLGACKIHAKVELAEIVMENLVRFEPE--G----D 528 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~ 528 (608)
+++.+...|...|++++|+..++++ ...|+ ..++..+...|...|++++|...++++++..+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999988876 11222 257888889999999999999999999876432 1 3
Q ss_pred chHHHHHHHHHhCCChHHH-HHHHHHHH
Q 047146 529 GAYILMTNIYSSKNRWKEA-LKLRKKMK 555 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 555 (608)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77787765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-07 Score=80.80 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=112.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhcc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA-CSHA 439 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~ 439 (608)
..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..+++.... .|+.......... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 4566677888999999999988774 35677888888899999999999999887764 4444333222111 1222
Q ss_pred ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 047146 440 GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD---AFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~ 514 (608)
+....|...+++..+ ..| +...+..+..++...|++++|.+.++++ ...|+ ...+..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 233346777877766 345 5788888999999999999999999887 55554 557888888899999999999
Q ss_pred HHHHHHHh
Q 047146 515 IVMENLVR 522 (608)
Q Consensus 515 ~~~~~~~~ 522 (608)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.68 E-value=3e-06 Score=86.57 Aligned_cols=374 Identities=9% Similarity=-0.054 Sum_probs=219.6
Q ss_pred cC-CcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCC-chHHH
Q 047146 130 SQ-SLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDY-PTEAI 207 (608)
Q Consensus 130 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~ 207 (608)
.| ++..|+.+++.++..- |. |+++.+..+|+..... .|++..|..-+....+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 35 3677777777776632 22 8999999999996663 3688888888877776653 45667
Q ss_pred HHHHHHHHC-CCCC-CHhHHHHHHHHhhc----cCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 047146 208 LSFFDMCQA-NLRP-DGMILVIVLSACSK----LGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKV 281 (608)
Q Consensus 208 ~~~~~m~~~-~~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 281 (608)
.+|+..... |..| +...|...+..+.. .++.+.+..+|+.++.. +...-...|......-.. .....+.++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~-~~~~~~~~~ 145 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELE-LNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHH-hccccHHHH
Confidence 788777653 4333 55677777776543 45678888899988874 221122233333222111 112222222
Q ss_pred HccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc--CC-----hHHHHHHHHHHHHc
Q 047146 282 FDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI--GW-----LELGKWVHTYLDKN 354 (608)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~ 354 (608)
. .... +.+..|..+++++...--..+...|...+.--... +- .+.+..+++.++..
T Consensus 146 ~---------------~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 146 V---------------GDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp H---------------HHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred H---------------HHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 2 2111 23344444454443210001223444433332221 11 34566788887775
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC-CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CC
Q 047146 355 HINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC-RDV-YSYTAMIVGLAIHGKAWKALDIFSEMSQVG---------IE 423 (608)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g---------~~ 423 (608)
. +.+..+|...+..+.+.|+++.|..++++... |+. ..|. .|......++. ++.+.+.- ..
T Consensus 209 ~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 209 F-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp T-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhh
Confidence 4 45577888888888899999999999986442 322 2232 23222121222 33332210 01
Q ss_pred C---CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHH
Q 047146 424 P---DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG-LIREALDLIKSM-PLVP-DAFVW 497 (608)
Q Consensus 424 p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~ 497 (608)
+ ....|...+....+.++.+.|..+|.++ +.. ..+...|...+..-.+.+ +.+.|..+|+.. ...| ++..|
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 1 1235666677777788899999999998 421 124445543333333334 699999999887 2123 45566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...+......|+.+.|+.+++++ +.....|...+..-...|+.+.+.++++++.+
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777778899999999999998 33456788888877888999999998888863
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-06 Score=78.80 Aligned_cols=130 Identities=8% Similarity=-0.037 Sum_probs=110.0
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 443 (608)
..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 4566778899999999999999998899999999999999999999999999998852 335668889999999999999
Q ss_pred HHHHHHHHhHhhcC-------------CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 047146 444 EGCKHFLDMSRVYN-------------LQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDA 494 (608)
Q Consensus 444 ~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 494 (608)
+|.+.|+.+.+... ..| ....+..+..+|.+.|++++|.+.+++. ...|+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999987211 111 2378889999999999999999999988 666754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=76.10 Aligned_cols=119 Identities=15% Similarity=0.062 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++.+|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667777888888888888888877 3344 67788888889999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHH
Q 047146 540 SKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQ 600 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 600 (608)
..|++++|...+++..+..... ...|.+..+...+..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~--------------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEV--------------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH--------------------HTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCccc--------------------CCchhHHHHHHHHHHHHHh
Confidence 9999999999999887543211 2347777777777766544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-07 Score=76.69 Aligned_cols=97 Identities=11% Similarity=-0.115 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777888888888888888877 3344 6778888888888999999999999999999999988899999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 047146 539 SSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 539 ~~~g~~~~A~~~~~~m~~~ 557 (608)
...|++++|.+.+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5.1e-07 Score=77.36 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=93.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|++.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555556666777777777777776652 2234666777777777778888887777776 3334 5677888888899
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHhCCChHHHHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILM--TNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..|++++|...++++.+..|.+...+..+ +..+.+.|++++|.+.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999999988777444 444788899999999988775
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=7.6e-07 Score=71.82 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLV-PDAFVWGALLGAC 504 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 504 (608)
..+..+...+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|..+++++ ... .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45566666666777777777777776652 2234556667777777777777777777766 222 3667777888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKN 542 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 542 (608)
...|++++|...++++.+..|+++..+..++.++.+.|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888988888888888888888888877776543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.8e-07 Score=89.49 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...+++++++.|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357788888888999999999888887 4445 67888899999999999999999999999999999999999999999
Q ss_pred hCCChHHH-HHHHHHHH
Q 047146 540 SKNRWKEA-LKLRKKMK 555 (608)
Q Consensus 540 ~~g~~~~A-~~~~~~m~ 555 (608)
+.|++++| ..++++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 45666664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=82.26 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=56.8
Q ss_pred cccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--HHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGA-CKIHAKV--ELA 513 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~a 513 (608)
.|++++|...++...+. .+.+...|..+...|...|++++|...+++. ...| +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444454444444431 1123344455555555555555555555544 2222 34444444444 4455555 555
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 514 EIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=7.2e-07 Score=72.66 Aligned_cols=116 Identities=8% Similarity=-0.033 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGAC 504 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 504 (608)
..+..+...+...|++++|...++++... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45556666677777777777777777652 2234566777777777778888887777766 3334 567788888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCh
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRW 544 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 544 (608)
...|++++|...++++.+..|+++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999888888888888888765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-07 Score=73.02 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|++.+++. ...| +...+..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4444444455555555555555554431 1113344444444444555555555444444 2122 3344444444444
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 541 (608)
..|++++|...++++.+..|.+...+..++.++.+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 555555555555555544444444444444444433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=89.14 Aligned_cols=188 Identities=8% Similarity=-0.070 Sum_probs=126.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMK--C-RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSA 435 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 435 (608)
...+..+...+.+.|++++|...|++.. . .+...|..+...|...|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4455667777788888888888887664 2 36677888888888888888888888888774 55 45577888888
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQP---QTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 512 (608)
+...|++++|...|..+.+...-.+ ....+..+ ...+...+.. .......++......+.. + ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 8888999999888888766211111 11112111 1122212221 122222334444333322 2 3688999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhC-CChHHHHHHHHHHHhC
Q 047146 513 AEIVMENLVRFEPEGDGAYILMTNIYSSK-NRWKEALKLRKKMKER 557 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 557 (608)
|.+.++++.+..|++......+...+.+. +.+++|.++|++..+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998877777777777777 7789999999988653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.8e-07 Score=72.83 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 444555555555666666666655554 3333 44555555555555566666666666666655555555556666666
Q ss_pred hCCChHHHHHHHHHHHh
Q 047146 540 SKNRWKEALKLRKKMKE 556 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~ 556 (608)
+.|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666655544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.9e-05 Score=71.16 Aligned_cols=211 Identities=12% Similarity=0.109 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHH----HHc---CChH
Q 047146 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG--RIDQAFGVFRSMKC---RDVYSYTAMIVGL----AIH---GKAW 408 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---~~~~ 408 (608)
.++|......++..+ +.+..+++.--.++...| +++++++.++.+.. .+..+|+.--..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 356777777777665 334556676677777777 89999999987763 4556777765555 555 7888
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHH--HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC------HH
Q 047146 409 KALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVE--EGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL------IR 479 (608)
Q Consensus 409 ~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~ 479 (608)
+++.+++++.+. .| |..+|..-...+.+.|.++ ++.+.+.++.+. -.-|...|+.-..++.+.|+ ++
T Consensus 128 ~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 999999999885 44 5667777777777778777 888888888873 23366677766666666666 88
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 047146 480 EALDLIKSM-PLVP-DAFVWGALLGACKIHAKV-ELAEIVMENLVRFE---PEGDGAYILMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 480 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 553 (608)
++++.++++ ...| |...|+.+...+.+.|+. +....+.+++.+++ |.++.++..++++|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 888888877 4445 788888888888777774 44556777777765 77778888999999999999999999999
Q ss_pred HHh
Q 047146 554 MKE 556 (608)
Q Consensus 554 m~~ 556 (608)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-06 Score=68.62 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
..+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555666666666666666666665 2233 555666666667777777777777777777777777677777777777
Q ss_pred CCChHHHHHHHHHHHh
Q 047146 541 KNRWKEALKLRKKMKE 556 (608)
Q Consensus 541 ~g~~~~A~~~~~~m~~ 556 (608)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777777776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-07 Score=74.01 Aligned_cols=96 Identities=13% Similarity=-0.002 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSK 541 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 541 (608)
.+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999888 4455 7788888889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 047146 542 NRWKEALKLRKKMKERKV 559 (608)
Q Consensus 542 g~~~~A~~~~~~m~~~~~ 559 (608)
|++++|+..+++..+...
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999886543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.4e-07 Score=70.35 Aligned_cols=100 Identities=17% Similarity=0.083 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE--GDGAYILMTN 536 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 536 (608)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667778888888888888888876 3333 6778888888899999999999999999999999 8889999999
Q ss_pred HHHhC-CChHHHHHHHHHHHhCCCc
Q 047146 537 IYSSK-NRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 537 ~~~~~-g~~~~A~~~~~~m~~~~~~ 560 (608)
+|.+. |++++|.+.+++..+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999876543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-05 Score=74.98 Aligned_cols=158 Identities=8% Similarity=-0.062 Sum_probs=119.0
Q ss_pred HHHHhHhcCCHHHHHHHHhhcCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 047146 366 LVDMYAKCGRIDQAFGVFRSMKCR---DV------YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE-PD----EVTFVG 431 (608)
Q Consensus 366 li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 431 (608)
.+..+...|++++|..++++..+. +. ..+..+...+...+++++|+..+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999999876531 11 12334666677788999999999999874322 22 226888
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047146 432 VLSACSHAGLVEEGCKHFLDMSRVY----NLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-------PLVPD-AFVWG 498 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 498 (608)
+...|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|++.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999987521 11222 347888999999999999999998876 22222 56888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhc
Q 047146 499 ALLGACKIHA-KVELAEIVMENLVRF 523 (608)
Q Consensus 499 ~l~~~~~~~~-~~~~a~~~~~~~~~~ 523 (608)
.+..++...| ++++|...++++.++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8889999999 579999999988764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5.9e-07 Score=75.44 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGAC 504 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 504 (608)
.+..+...+.+.|++++|...|+.+.+ +.| +...|..+..+|.+.|++++|++.|++. .+.| ++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455555556666666666666666655 233 4555666666666666666666666655 3334 455666666667
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 505 KIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 505 ~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
...|++++|...+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777777777766653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.9e-06 Score=69.35 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999988 3334 67888999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 047146 540 SKNRWKEALKLRKKMKER 557 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~~ 557 (608)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.5e-06 Score=73.09 Aligned_cols=154 Identities=8% Similarity=-0.044 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC----ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047146 292 SWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG----WLELGKWVHTYLDKNHINTDGFIGNALV 367 (608)
Q Consensus 292 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li 367 (608)
++..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....+.| ++..+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33334444444444444444444444432 22333333333333 3 4444444444444332 233344455
Q ss_pred HHhHh----cCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047146 368 DMYAK----CGRIDQAFGVFRSMKCRD-----VYSYTAMIVGLAI----HGKAWKALDIFSEMSQVGIEPDEVTFVGVLS 434 (608)
Q Consensus 368 ~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 434 (608)
.+|.. .+++++|.+.|++..+.+ ...+..|...|.. .+++++|+.+|++..+. ..+...+..+..
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGM 170 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 55544 566666666666655422 4566666666666 66677777777777664 223334455555
Q ss_pred HHhcc-c-----cHHHHHHHHHHhHh
Q 047146 435 ACSHA-G-----LVEEGCKHFLDMSR 454 (608)
Q Consensus 435 ~~~~~-g-----~~~~a~~~~~~~~~ 454 (608)
.|... | +.++|..+|+...+
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 55432 2 67777777776665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-07 Score=77.63 Aligned_cols=113 Identities=8% Similarity=-0.062 Sum_probs=84.3
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047146 414 FSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLV 491 (608)
Q Consensus 414 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 491 (608)
|+++.. +.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|++.|++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 34533 35666677788888888888888887762 2235677778888888888888888888877 344
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 492 P-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 492 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
| +...+..+..++...|++++|...+++++++.|+++..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 4 56778888888999999999999999999998887754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-06 Score=69.94 Aligned_cols=117 Identities=19% Similarity=0.081 Sum_probs=100.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788899999999999999999987 3344 7788889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhh
Q 047146 539 SSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603 (608)
Q Consensus 539 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 603 (608)
.+.|++++|...+++..+. .|+++..+..+..+...+.+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--------------------------DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHHHHhc
Confidence 9999999999999998753 35566777777777666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.3e-07 Score=82.21 Aligned_cols=183 Identities=13% Similarity=0.005 Sum_probs=127.1
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH---------------
Q 047146 372 KCGRIDQAFGVFRSMKC--R-DVYSYTAM-------IVGLAIHGKAWKALDIFSEMSQVGIEPDE--------------- 426 (608)
Q Consensus 372 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~--------------- 426 (608)
..++...|.+.|.+... | ....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888887763 3 45677777 4555555556666655555444 23221
Q ss_pred -------HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 047146 427 -------VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDA----F 495 (608)
Q Consensus 427 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 495 (608)
.....+...+...|++++|.++|..+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455667788899999888887765 2354336666677888889999999998877333333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFE--PE-GDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++....+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56667788888999999999999887432 33 344778888889999999999999998876554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-06 Score=79.29 Aligned_cols=160 Identities=8% Similarity=-0.056 Sum_probs=113.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKC--R-DV------YSYTAMIVGLAIHGKAWKALDIFSEMSQVGI---EPD--EVTF 429 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~ 429 (608)
...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|+..+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4456677888888888888865431 1 11 2233455667778899999999988875321 122 3478
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-CHHH
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-----TEHYGCMVDLFGRAGLIREALDLIKSM-PL------VP-DAFV 496 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~~~ 496 (608)
+.+...|...|++++|...++++.+.....|+ ..++..+...|.+.|++++|++.+++. .+ .. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888899999999999999988742111222 257888899999999999999988876 11 11 1567
Q ss_pred HHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 047146 497 WGALLGACKIHAKVELA-EIVMENLVRF 523 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 523 (608)
|..+...+...|++++| ...++++..+
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 88888899999999999 7778887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-06 Score=70.97 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++.+..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444455555555555555555544 33443 3444445555555555555555555555555555555555555
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 047146 537 IYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 537 ~~~~~g~~~~A~~~~~~m~ 555 (608)
+|...|++++|...+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-06 Score=71.48 Aligned_cols=98 Identities=9% Similarity=-0.055 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
+...+..+...+...|++++|+..|++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777777777777777777777766 3334 5667777778888888888888888888888888888888888888
Q ss_pred HhCCChHHHHHHHHHHHhCC
Q 047146 539 SSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 539 ~~~g~~~~A~~~~~~m~~~~ 558 (608)
...|++++|...+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 88888888888888876543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=75.30 Aligned_cols=109 Identities=11% Similarity=0.001 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLG 502 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 502 (608)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3457888888999999999999999999873 2336788899999999999999999999987 4455 5778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 503 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
++...|++++|...+++++++.|++...+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999988665544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.9e-07 Score=72.44 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-------hHHH
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-------AYIL 533 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 533 (608)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777778888888888888776 4445 5677888888888888888888888888888776643 5677
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 047146 534 MTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 534 l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
++.+|...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888888899999988888764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.3e-06 Score=73.65 Aligned_cols=92 Identities=11% Similarity=-0.006 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCC----
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-P---LVP-D----AFVWGALLGACKIHAKVELAEIVMENLVRFEP--EGD---- 528 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~---- 528 (608)
.+..+...|...|++++|.+.+++. . ..+ + ...+..+...+...|++++|...++++.+..+ .++
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444455555555555555554443 0 011 1 22344555566666666666666666664421 111
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..+..++.+|...|++++|...+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 134566777777777777777766664
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=76.61 Aligned_cols=152 Identities=12% Similarity=-0.008 Sum_probs=95.8
Q ss_pred hcCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccccHH
Q 047146 372 KCGRIDQAFG---VFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ----VGIEP-DEVTFVGVLSACSHAGLVE 443 (608)
Q Consensus 372 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~ 443 (608)
..|++++|.+ .+..-+......+..+...+...|++++|...+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777776 44443333455667777777777777777777777654 11222 2246666777777888888
Q ss_pred HHHHHHHHhHhhcCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 047146 444 EGCKHFLDMSRVYNLQP-----QTEHYGCMVDLFGRAGLIREALDLIKSM----PLVPD----AFVWGALLGACKIHAKV 510 (608)
Q Consensus 444 ~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~ 510 (608)
+|...+.+..+...-.+ ....+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88887777765311112 1345667777888888888888777765 11122 22456667778888888
Q ss_pred HHHHHHHHHHHhc
Q 047146 511 ELAEIVMENLVRF 523 (608)
Q Consensus 511 ~~a~~~~~~~~~~ 523 (608)
++|...++++.++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-06 Score=76.94 Aligned_cols=169 Identities=6% Similarity=-0.090 Sum_probs=102.9
Q ss_pred HhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH
Q 047146 369 MYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 445 (608)
.....|+++++.+.++.-.. .....+..+...+...|++++|+..|++.... .|+...+... ....-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 34444666666666554332 13445666677777778888888888777763 3322111000 00000
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 446 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
. .. .....|..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01356677788888888888888888877 3344 6778888889999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCChHHHH-HHHHHHHhCC
Q 047146 524 EPEGDGAYILMTNIYSSKNRWKEAL-KLRKKMKERK 558 (608)
Q Consensus 524 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 558 (608)
.|+++.++..++.++...++.+++. ..+..|...+
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999988888777 5566665443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=72.74 Aligned_cols=105 Identities=10% Similarity=-0.069 Sum_probs=76.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++. ...| ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4555566677777888888777777662 2235667777777788888888888887776 3334 5567777888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
..|++++|...++++++..|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 89999999999999998888887554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-06 Score=74.39 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...|..+..++.+.|++++|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 356777777888888888888888888888888888888888888888888888888888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-06 Score=74.80 Aligned_cols=127 Identities=8% Similarity=0.035 Sum_probs=97.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH-HHhcCCH--
Q 047146 402 AIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL-FGRAGLI-- 478 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 478 (608)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45677888888888877742 335568888888888999999999999988773 12356677788888 7788988
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 479 REALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 479 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998887 4445 577888888999999999999999999999999986543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-06 Score=76.90 Aligned_cols=136 Identities=10% Similarity=-0.034 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ--TEHYGCMVDLF 472 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 472 (608)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence 34556667777777777777776653 35444444455567777888888887775543 11 111 23566777888
Q ss_pred HhcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 473 GRAGLIREALDLIKSM--P-LVPD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
.+.|++++|++.|++. + ..|. ...+.....++.+.|+.++|...|+++.+.+|+ +.++..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888877 2 1143 235566667788888888898888888888888 65555553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=69.13 Aligned_cols=109 Identities=8% Similarity=-0.100 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+......+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666666677776666666552 1224566666777777777777777777666 3344 5667777777888
Q ss_pred HcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFE------PEGDGAYILMTNIY 538 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 538 (608)
..|++++|...++++.++. |.+...+..+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888887 66666665555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=5.4e-06 Score=65.91 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=70.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACK 505 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 505 (608)
.+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|...+++. ...| +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555556666666666666666552 1224555666666666667777776666665 2233 5667777777788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
..|++++|...++++.+..|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 888888888888888888888776666665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.1e-06 Score=71.64 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMV 469 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 469 (608)
...|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|+..|+++.+. -+.+...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 445666666677777777777777776663 34 4456666666777777777777777776652 122456666677
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 047146 470 DLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~ 488 (608)
.+|.+.|++++|++.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 7777777777777776665
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.2e-06 Score=68.42 Aligned_cols=112 Identities=10% Similarity=-0.072 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047146 426 EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGA 499 (608)
Q Consensus 426 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 499 (608)
...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...|...|++++|++.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34555555566666666666666666654 2343 456666677777777777777777665 3334 5667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 500 LLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
+..++...|++++|...++++++..|++...+..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888889999999999999999999887777666665443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.33 E-value=9.7e-06 Score=69.17 Aligned_cols=129 Identities=10% Similarity=-0.068 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 471 (608)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+.+..+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456667777788888888888888877742 224567777778888888888888888888762 23356778888888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 472 FGRAGLIREALDLIKSM-PLVP-DAFVWG--ALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
+...|++++|.+.+++. ...| +...+. .....+...|++++|...+++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888877 3333 444443 3334467778888888888776543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=8.6e-07 Score=78.73 Aligned_cols=115 Identities=13% Similarity=-0.021 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-D----------------AFVWGALLGACKIHAKVELAEIVMENLVRF 523 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 523 (608)
...+..+...+.+.|++++|++.|++. ...| + ...|..+..++...|++++|...++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777777888888888887766 2222 2 267888889999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 047146 524 EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 524 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 602 (608)
.|+++.++..++.+|...|++++|...+++..+. +|+++.++..+..+...+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------------------------NPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------------------------CCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753 4666777777776666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.6e-06 Score=81.64 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----------------AFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
...+..+...|.+.|++++|+..|++. ...|+ ...|..+..++.+.|++++|...++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445566666666666666666666665 22332 4788889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 047146 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 602 (608)
|+++.+|..++.+|...|++++|+..|++..+. .|++..++..|..+...++
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------------------------YPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSSCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999753 3666666666666655544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.29 E-value=6.7e-06 Score=66.80 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG-------DGAYI 532 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 532 (608)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888877 3333 67788888888999999999999999999988766 67899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 047146 533 LMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=8.5e-05 Score=70.88 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=105.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChHH-HHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047146 300 LTHRGQFKEALDIFRRMQGLGLKPDDFT-LVCVLNSCANIG-WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRID 377 (608)
Q Consensus 300 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 377 (608)
....+..++|++++++++.. .|+..| ++.--..+...+ .++++..+++.+.... +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-P-------------------- 120 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-L-------------------- 120 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-C--------------------
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-C--------------------
Confidence 33444556788888777764 344433 333223333333 2444444444444333 1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHH--------HHH
Q 047146 378 QAFGVFRSMKCRDVYSYTAMIVGLAIH-G-KAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVE--------EGC 446 (608)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--------~a~ 446 (608)
++..+|+.-...+... + ++++++++++++.+. .| |...|+.-...+.+.|.++ ++.
T Consensus 121 -----------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 121 -----------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp -----------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 2334444444444433 3 445555555555442 22 3334443333333333333 555
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-------
Q 047146 447 KHFLDMSRVYNLQPQTEHYGCMVDLFGRAGL-------IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKV------- 510 (608)
Q Consensus 447 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~------- 510 (608)
+.+.++.+. -.-|...|+....++.+.++ ++++++.++++ ...| |...|+-+-..+.+.|..
T Consensus 188 e~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~ 265 (349)
T 3q7a_A 188 DWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPA 265 (349)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccc
Confidence 555555441 12244445554444444443 45555555544 2233 455555544444444432
Q ss_pred -------------HHHHHHHHHHHhcC------CCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 511 -------------ELAEIVMENLVRFE------PEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 511 -------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.........+.... +.++.+...|+++|...|+.++|.++++.+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 266 ILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11222222222221 34555777889999999999999999998864
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=5.6e-06 Score=68.17 Aligned_cols=100 Identities=8% Similarity=-0.156 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLG 502 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 502 (608)
+...+..+...+...|++++|...|...... .+.+...|..+..++...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4456666666777777777777777776652 1224566777777777777777777777766 3334 5667777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 503 ACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 503 ~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
++...|++++|...++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.9e-06 Score=83.35 Aligned_cols=144 Identities=10% Similarity=-0.027 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666677777777777777777777652 2221100 0 000000 000 01357778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHH
Q 047146 471 LFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
+|.+.|++++|+..++++ .+.| +...|..+..++...|++++|...+++++++.|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998887 4444 67788889999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 047146 549 K-LRKKMKE 556 (608)
Q Consensus 549 ~-~~~~m~~ 556 (608)
+ .+++|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4565543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-06 Score=87.00 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=94.8
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAK 509 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 509 (608)
...+.+.|++++|.+.++++.+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34456778888888888888772 34 4778888888888999999998888887 4455 67788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhCCChHHHHHHHHH
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNI--YSSKNRWKEALKLRKK 553 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 553 (608)
+++|.+.++++++..|++...+..++.+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988888 8889999999999884
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-06 Score=69.17 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRF-------EPEGDGAY----ILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777888888888888888888888 88888888 8888888888888888888888864
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.5e-06 Score=67.93 Aligned_cols=89 Identities=18% Similarity=0.115 Sum_probs=47.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVPD-A---FVWGALLGACKIHAKVELAEIVMENLVRFEPEG---DGAYILMTNIYS 539 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 539 (608)
+...+.+.|++++|.+.|+.. ...|+ . ..+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344444555555555555544 11221 1 244445555556666666666666666666655 444556666666
Q ss_pred hCCChHHHHHHHHHHHh
Q 047146 540 SKNRWKEALKLRKKMKE 556 (608)
Q Consensus 540 ~~g~~~~A~~~~~~m~~ 556 (608)
+.|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-05 Score=78.72 Aligned_cols=164 Identities=8% Similarity=-0.110 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccccHHHHHHHHHHhHhh---cCCCC-Chh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVG-IEPDE----VTFVGVLSACSHAGLVEEGCKHFLDMSRV---YNLQP-QTE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 463 (608)
++..+...|...|++++|.+.+.++...- ..++. .+.+.+...+...|+.+++..++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667778888888888888887765421 11122 12233333455668888888888776542 12222 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----C
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-------PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE---PEG----D 528 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~ 528 (608)
++..++..|...|++++|..++++. ..+| ...++..++..|...|++++|..+++++.... +++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778889999999999998888775 1223 24477778888999999999999999888663 222 1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567778888899999999888877753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00098 Score=63.58 Aligned_cols=237 Identities=10% Similarity=0.041 Sum_probs=149.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRG-QFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN 337 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 337 (608)
++.+-....+.+..++|+++++.+. +.+..+|+.--..+...| .+++++++++.+.... +-+...|+.-...+..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333334444555678999999887 345667888888888888 5999999999999863 2333444333222222
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH-----
Q 047146 338 IGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG-RIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAW----- 408 (608)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~----- 408 (608)
. .+ ++++++++++.+.+ +|..+|+...-.+.+.|.++
T Consensus 136 l----------------------------------~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 136 I----------------------------------SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp H----------------------------------CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred h----------------------------------cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchh
Confidence 1 02 44566666666653 34556665555555544444
Q ss_pred ---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-------HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH
Q 047146 409 ---KALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL-------VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 409 ---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (608)
++++.++++.+.. .-|...|+.....+.+.+. ++++.+.+.++... -+-|...|+.+-..+.+.|+.
T Consensus 182 ~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCC
Confidence 7888888888752 2255677777666666664 67777777777662 233667777777777666653
Q ss_pred --------------------HHHHHHHHhC-CC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCCc
Q 047146 479 --------------------REALDLIKSM-PL-------VPDAFVWGALLGACKIHAKVELAEIVMENLV-RFEPEGDG 529 (608)
Q Consensus 479 --------------------~~A~~~~~~~-~~-------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~ 529 (608)
.+..++..++ +. .+.+..+..++..|...|+.++|.++++.+. +.+|-...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 3344444444 21 2577788888889999999999999999886 55776655
Q ss_pred hHHHHHH
Q 047146 530 AYILMTN 536 (608)
Q Consensus 530 ~~~~l~~ 536 (608)
.|...+.
T Consensus 339 yw~~~~~ 345 (349)
T 3q7a_A 339 YWEFRRR 345 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-06 Score=68.69 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|+..+++..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.9e-06 Score=81.43 Aligned_cols=150 Identities=9% Similarity=-0.045 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 45677777788889999999999999887 3555432 334455555443221 136788899
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hCCChHHH
Q 047146 471 LFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS-SKNRWKEA 547 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 547 (608)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...+++++++.|+++.++..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4445 67788899999999999999999999999999999988888888844 55677888
Q ss_pred HHHHHHHHhCCCc
Q 047146 548 LKLRKKMKERKVK 560 (608)
Q Consensus 548 ~~~~~~m~~~~~~ 560 (608)
.+++++|......
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 8899888765543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=63.10 Aligned_cols=99 Identities=15% Similarity=0.031 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP---DAFVWGALLGA 503 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 503 (608)
.+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4445555566666666666666666552 1224455666666666666666666666665 2233 35666677777
Q ss_pred HHHc-CCHHHHHHHHHHHHhcCCCCC
Q 047146 504 CKIH-AKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 504 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 528 (608)
+... |++++|.+.++++.+..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 777777777777777777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=7.9e-06 Score=66.33 Aligned_cols=105 Identities=8% Similarity=-0.035 Sum_probs=51.8
Q ss_pred HHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHHHH
Q 047146 431 GVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PL----VPD----AFVWGALL 501 (608)
Q Consensus 431 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~l~ 501 (608)
.+...+...|++++|...+..+.+. .+.+...+..+...|...|++++|...+++. .. .++ ..++..+.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3333444444444444444444331 1123334444444444444444444444443 11 112 44556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
..+...|++++|...++++.+..| ++.....+..++
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 667777777777777777777666 344444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0008 Score=63.86 Aligned_cols=190 Identities=7% Similarity=-0.061 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC-hHHHHHHHH
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG--RIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGK-AWKALDIFS 415 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-~~~A~~~~~ 415 (608)
+.+..++..+.... +-+..+|+.-..++.+.| .++++..+++.+. ..|..+|+.-.-.+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444444433 223344444444444445 3666666666665 2455666666666666666 467777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhcc--------------ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc-----
Q 047146 416 EMSQVGIEP-DEVTFVGVLSACSHA--------------GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRA----- 475 (608)
Q Consensus 416 ~m~~~g~~p-~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 475 (608)
++.+. .| |...|+.....+... +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 77764 33 444555444443333 4466666666666552 222455565444444443
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047146 476 ------GLIREALDLIKSM-PLVPDAFVWGALLG-----ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNI 537 (608)
Q Consensus 476 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 537 (608)
+.++++++.++++ ...||. .|..+.. +....+..++....++++.+++|....-|..+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3455666666655 344543 2221111 11134556666666667766666666555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-05 Score=65.00 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=58.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIH 507 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 507 (608)
..+...+.+.|++++|...|+.+.+. -+.+...|..+..++.+.|++++|+..+++. .+.| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33445556666666666666666552 1224556666666666677777777666665 3344 455666677777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCC
Q 047146 508 AKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~ 528 (608)
|++++|...++++++..|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777777777777777777653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=66.47 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCc
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM----PLVPD----AFVWGALLGACKIHAKVELAEIVMENLVRFEPE------GDG 529 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~ 529 (608)
.+..+...+...|++++|.+.+++. +..++ ...+..+...+...|++++|...++++.+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555543 00111 335555666677777777777777777655221 124
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 530 AYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 530 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888888888888888887754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-05 Score=74.92 Aligned_cols=111 Identities=8% Similarity=-0.153 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 047146 425 DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALL 501 (608)
Q Consensus 425 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 501 (608)
+...+..+...+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|++.+++. ...| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567778888899999999999999999873 44 6788889999999999999999999887 5566 677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIY 538 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 538 (608)
.++...|++++|...++++.++.|+++..+...+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 9999999999999999999999887765544444333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.1e-05 Score=62.07 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=63.7
Q ss_pred HHHHHhccccHHHHHHHHHHhHhhcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 047146 432 VLSACSHAGLVEEGCKHFLDMSRVYNLQPQT---EHYGCMVDLFGRAGLIREALDLIKSM-PLVPD----AFVWGALLGA 503 (608)
Q Consensus 432 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 503 (608)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...+++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3444556666666666666665521 1122 35556666667777777777766665 22332 4556667777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 504 CKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 504 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
+...|++++|...++++.+..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 8888888888888888888888776444333
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-05 Score=77.54 Aligned_cols=137 Identities=10% Similarity=-0.042 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVD 470 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 470 (608)
..|..+...+.+.|++++|+..|++..+. .|+.. ..... .... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHH
Confidence 45666677777778888887777776652 11100 00001 1111 1223 4567888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHH
Q 047146 471 LFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++++++.|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 6666 67788889999999999999999999999999999999999999999988888776
Q ss_pred HH
Q 047146 549 KL 550 (608)
Q Consensus 549 ~~ 550 (608)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-05 Score=62.31 Aligned_cols=60 Identities=7% Similarity=-0.054 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
.+..+...+.+.|++++|+..|++..+. .|+ ...|..+..++...|++++|++.+++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555566666666666666666552 343 34555555566666666666666655544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00067 Score=64.38 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=132.4
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcccc-HHHHHHH
Q 047146 376 IDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGK--AWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGL-VEEGCKH 448 (608)
Q Consensus 376 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-~~~a~~~ 448 (608)
++++..+++.+. .++..+|+.-...+...++ +++++.+++++.+. .| |...|+.-...+...|. ++++.+.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777765 3577889988888888884 89999999999985 44 66688777777777887 6899999
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----
Q 047146 449 FLDMSRVYNLQPQTEHYGCMVDLFGRA--------------GLIREALDLIKSM-PLVP-DAFVWGALLGACKIH----- 507 (608)
Q Consensus 449 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----- 507 (608)
+..+.+. -+-|...|+....++.+. +.++++++.++.. ...| |...|+-+-..+.+.
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 9999873 234677787776666655 4578888888887 4455 777887665555544
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH---HHhCCChHHHHHHHHHHHhCC
Q 047146 508 ------AKVELAEIVMENLVRFEPEGDGAYILMTNI---YSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 508 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~ 558 (608)
+.++++++.++++.+..|++.-++..++.. ....|..++....+.++.+-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 458899999999999999985443333322 224677888999999987533
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.9e-05 Score=80.02 Aligned_cols=64 Identities=9% Similarity=-0.063 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
...|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|+..|++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5678888899999999999999999999999999999999999999999999999999999854
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.1e-05 Score=77.17 Aligned_cols=131 Identities=14% Similarity=0.034 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVP-DAFVWGALLGACK 505 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 505 (608)
..+..+...+.+.|++++|.+.|+++.+.. +.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 356666666777777777777777766510 000 0000111111 1233 4568888889999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCC
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 585 (608)
+.|++++|+..+++++++.|+++.+|..++.+|...|++++|++.+++..+. .|
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------------------------~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------------------AP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------------CC
Confidence 9999999999999999999999999999999999999999999999998753 36
Q ss_pred ChhHHHHHHHHHHHHHh
Q 047146 586 KTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 586 ~~~~~~~~l~~~~~~~~ 602 (608)
++..++..|..+...++
T Consensus 339 ~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 339 EDKAIQAELLKVKQKIK 355 (370)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 67777777777766554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=68.65 Aligned_cols=77 Identities=17% Similarity=0.032 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD-GAYILMTNIY 538 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 538 (608)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...+++++++.|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 457788888888999999999888887 4445 677888888999999999999999999999999987 4444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=5e-06 Score=66.47 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=63.6
Q ss_pred cccHHHHHHHHHHhHhhcCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 047146 439 AGLVEEGCKHFLDMSRVYNL-QP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAE 514 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 514 (608)
.|++++|+..|+++.+ .+. .| +...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4666777777777765 110 23 3566777777788888888888887776 3344 5667777888888888888888
Q ss_pred HHHHHHHhcCCCCCchH
Q 047146 515 IVMENLVRFEPEGDGAY 531 (608)
Q Consensus 515 ~~~~~~~~~~p~~~~~~ 531 (608)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888876543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=66.44 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCch
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-PL-------VPD-AFVW----GALLGACKIHAKVELAEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 530 (608)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6666666677777777666666555 33 785 4577 888899999999999999999999999998865
Q ss_pred HHHH
Q 047146 531 YILM 534 (608)
Q Consensus 531 ~~~l 534 (608)
+..+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.1e-05 Score=64.62 Aligned_cols=132 Identities=10% Similarity=0.008 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC----hh
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIE-PD----EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ----TE 463 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 463 (608)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555666665555554432100 11 124555556666666666666666665542111111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 464 HYGCMVDLFGRAGLIREALDLIKSM-------PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566667777777777777766655 1111 13456666777888888888888888877653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00036 Score=72.34 Aligned_cols=169 Identities=8% Similarity=-0.058 Sum_probs=136.1
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 047146 374 GRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGK----------AWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHA 439 (608)
Q Consensus 374 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 439 (608)
...++|.+.++.+.. .+...|+.--.++...|+ ++++++.++++.+. .| +..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 345677888887763 355678877777777776 89999999999985 55 556888888888888
Q ss_pred c--cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 047146 440 G--LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG-LIREALDLIKSM-PLVP-DAFVWGALLGACKIH------- 507 (608)
Q Consensus 440 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 507 (608)
+ +++++.+.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 779999999999883 2336778888888888888 899999999988 5566 788888887776663
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHH
Q 047146 508 -------AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 508 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 546 (608)
+.++++.+.++++++.+|++.++|..+..++.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988555
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.5e-06 Score=67.25 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 047146 461 QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEG------DGAYI 532 (608)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 532 (608)
+...+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456777788888888888888888877 3344 67788888888999999999999999999999988 66777
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q 047146 533 LMTNIYSSKNRWKEALKLRKK 553 (608)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~ 553 (608)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 788888887777766655543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.1e-05 Score=76.16 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=78.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047146 360 GFIGNALVDMYAKCGRIDQAFGVFRSMKC--RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACS 437 (608)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 437 (608)
...+..+...+.+.|++++|...|++... |+... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34567788889999999999999998653 32221 222333333332221 136777788888
Q ss_pred ccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCCHHHHH
Q 047146 438 HAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGA-CKIHAKVELAE 514 (608)
Q Consensus 438 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~~~~~~a~ 514 (608)
+.|++++|+..++++.+. -+.+...|..+..+|...|++++|+..|++. .+.|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988888772 2235778888889999999999999999888 56664 3344444444 33456677888
Q ss_pred HHHHHHHhcCCCCC
Q 047146 515 IVMENLVRFEPEGD 528 (608)
Q Consensus 515 ~~~~~~~~~~p~~~ 528 (608)
..+.++.+..|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 88998888888765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00016 Score=72.68 Aligned_cols=158 Identities=6% Similarity=-0.041 Sum_probs=117.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCCh
Q 047146 399 VGLAIHGKAWKALDIFSEMSQVGIEPDE----------------VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQT 462 (608)
Q Consensus 399 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 462 (608)
..+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456778888888888888764322111 247778899999999999999999987743333332
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Q 047146 463 ----EHYGCMVDLFGRAGLIREALDLIKSM-------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFE------ 524 (608)
Q Consensus 463 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 524 (608)
.+.+.+...+...|+.++|.++++.. +..+. ..++..+...+...|++++|..+++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23444555666778999999888765 23333 4577888899999999999999999987652
Q ss_pred CCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 525 PEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 525 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+.....+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 12235788999999999999999999998864
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.7e-05 Score=76.45 Aligned_cols=123 Identities=10% Similarity=-0.009 Sum_probs=89.0
Q ss_pred HhccccHHHHHHHHHHhHhhcC--CCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYN--LQP---Q-TEHYGCMVDLFGRAGLIREALDLIKSM---------PLVPD-AFVWGA 499 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 499 (608)
+..+|++++|+.++++..+... +.| + ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777766666654211 112 1 356677777777778877777776664 33454 347888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCc---hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 500 LLGACKIHAKVELAEIVMENLVRF-----EPEGDG---AYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 500 l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
|...|...|++++|+.+++++++. +|+.+. ....+...+...+++++|+.++++++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988863 677664 45678888889999999999999998754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=7.8e-05 Score=57.37 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|++.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888889999999999999999999999999999999999999999999999999998865
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.85 E-value=9.8e-05 Score=75.17 Aligned_cols=113 Identities=9% Similarity=0.028 Sum_probs=52.3
Q ss_pred HhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHH
Q 047146 369 MYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEE 444 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 444 (608)
.|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555443 123445555555555555555555555555552 33 23345555555555555555
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 047146 445 GCKHFLDMSRVYNLQP-QTEHYGCMVDL--FGRAGLIREALDLIK 486 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 486 (608)
|.+.++++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555442 12 22233333333 444455555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.82 E-value=9.3e-05 Score=58.61 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 481 ALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 481 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
|++.+++. ...| +...|..+...+...|++++|...++++++..|++...|..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444 3334 5566666667777777777777777777777777777777777777777777777777777654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00012 Score=54.88 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
...+..+...+.+.|++++|+..+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777777888888888887776 3334 56677788888888899999999999999888888888888888876
Q ss_pred hCC
Q 047146 540 SKN 542 (608)
Q Consensus 540 ~~g 542 (608)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00024 Score=55.52 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 492 PDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
++...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|++.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3556788888999999999999999999999999999999999999999999999999999998643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.6e-05 Score=65.83 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCC-----------ChHHHHHHHHHHHhCCC
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKN-----------RWKEALKLRKKMKERKV 559 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 559 (608)
+++|+..++++++++|++..+|..++.+|...| ++++|++.|++..+.++
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 679999999999999999999999999998875 89999999999886543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00032 Score=52.37 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
+...+..+...+...|++++|...++++.+..|+++..+..++.+|.+.|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35577788888999999999999999999999999999999999999999999999999998753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00015 Score=73.48 Aligned_cols=115 Identities=12% Similarity=-0.043 Sum_probs=89.3
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCC---chHH
Q 047146 471 LFGRAGLIREALDLIKSM---------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRF-----EPEGD---GAYI 532 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~ 532 (608)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++. +|+.+ ..++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999888765 23343 458889999999999999999999998864 56655 4688
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHhh
Q 047146 533 LMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603 (608)
Q Consensus 533 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 603 (608)
.|+.+|...|++++|+.++++..+.-.+ .- ...||...+...+|.....++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-TH-----------------GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-Hh-----------------CCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998752211 11 15789988888888887766553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00032 Score=52.81 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 492 PDAFVWGALLGACKIHAK---VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 477778888877765555 799999999999999999999999999999999999999999999987654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00086 Score=69.56 Aligned_cols=151 Identities=12% Similarity=0.021 Sum_probs=124.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcccc----------HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGL----------VEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 473 (608)
...++|++.++++.+ +.|+. ..|+.--.++...|+ ++++.+.++.+.+. -+-+..+|+.-.-++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345688999999998 46755 466666666666676 89999999999873 3346778888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC-------
Q 047146 474 RAG--LIREALDLIKSM-PLVP-DAFVWGALLGACKIHA-KVELAEIVMENLVRFEPEGDGAYILMTNIYSSK------- 541 (608)
Q Consensus 474 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 541 (608)
+.| +++++++.++++ ...| +...|+.-..+..+.| .++++.+.++++++.+|.+.++|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 899 779999999998 4444 8889999888888889 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhCCC
Q 047146 542 -------NRWKEALKLRKKMKERKV 559 (608)
Q Consensus 542 -------g~~~~A~~~~~~m~~~~~ 559 (608)
+.++++++.+++..+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988876544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0011 Score=54.29 Aligned_cols=90 Identities=7% Similarity=-0.077 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 047146 468 MVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS--- 540 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 540 (608)
|...|...+.+++|.+.|++.-...++..+..+...|.. .+++++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455555444112344444455555544 55666666666666554 344566666666666
Q ss_pred -CCChHHHHHHHHHHHhCCC
Q 047146 541 -KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 541 -~g~~~~A~~~~~~m~~~~~ 559 (608)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6667777777776666553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00018 Score=59.55 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCC
Q 047146 479 REALDLIKSM-PLVP-DAFVWGALLGACKIH-----------AKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 479 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~ 528 (608)
++|+..|++. .+.| +...|..+..+|... |++++|.+.|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3555555544 3344 344555555555544 589999999999999999985
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00048 Score=68.61 Aligned_cols=115 Identities=11% Similarity=0.034 Sum_probs=83.3
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCC---chH
Q 047146 470 DLFGRAGLIREALDLIKSM---------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRF-----EPEGD---GAY 531 (608)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~ 531 (608)
.-+.+.|++++|++++++. +..|+ ..+++.+..+|...|++++|+.+++++++. +|+.+ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777777654 11222 347788888899999999999999988754 45554 368
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 047146 532 ILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 532 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 602 (608)
+.|+.+|...|++++|+.++++..+--.+ . ....||...+++..|.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRV-T-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH-h-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999998752111 1 11568888888888888777665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00076 Score=51.37 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVP-DAF-VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
....+.+.|++++|++.+++. ...| +.. .|..+..++...|++++|...++++++.+|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455666777788887777776 3344 455 677777777777888888888888877777776555
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00068 Score=53.45 Aligned_cols=79 Identities=10% Similarity=-0.006 Sum_probs=48.4
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047146 445 GCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLV 521 (608)
Q Consensus 445 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 521 (608)
+...|+...+ ..| +...+..+...|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++.
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444554443 223 4555666666666666666666666665 2333 45566667777777777777777777777
Q ss_pred hcCCC
Q 047146 522 RFEPE 526 (608)
Q Consensus 522 ~~~p~ 526 (608)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0011 Score=54.21 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 493 DAFVWGALLGACKIHA---KVELAEIVMENLVRFE-P-EGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
+..+.-.+..++.+.+ +.++++.+++.+.+.+ | .....+..|+-+|.+.|++++|+++++.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444444444444 3334444444444444 3 223344444444555555555555555444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0041 Score=50.85 Aligned_cols=113 Identities=11% Similarity=-0.029 Sum_probs=90.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 047146 405 GKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIRE 480 (608)
Q Consensus 405 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 480 (608)
+++++|+++|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 666777778888899999998872 466778888888888 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 047146 481 ALDLIKSMPLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 481 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 526 (608)
|.++|++.-..-++..+..|...|.. .++.++|...++++.+.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999988323577788888888888 89999999999999887543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0095 Score=56.77 Aligned_cols=138 Identities=12% Similarity=0.010 Sum_probs=71.2
Q ss_pred CChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------ccHHHHHHHHHHhHh
Q 047146 389 RDVYSYTAMIVGLA--IHGK---AWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHA--------GLVEEGCKHFLDMSR 454 (608)
Q Consensus 389 ~~~~~~~~li~~~~--~~~~---~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 454 (608)
.+...|...+.+.. ..++ ..+|..+|++..+ ..|+. ..+..+..++... .........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46677777776543 3333 4679999999988 57764 3454444433210 011111111111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 455 VYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0111234455555555555556666666666655 3335555555555555666666666666666666666553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.045 Score=42.91 Aligned_cols=141 Identities=9% Similarity=0.040 Sum_probs=105.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (608)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 44567788888888877762 34556666666666666666666666666542222 24566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 481 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
...-+-.++ .+.......+......|+-++-..++..+....+.+++....++.+|.+.|+..+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666663 356667778888999999999999999987788888899999999999999999999999999999986
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00033 Score=53.51 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=45.7
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCC
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTE-HYGCMVDLFGRAGLIREALDLIKSM-PLVPDA-FVWGALLGACKIHAK 509 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~ 509 (608)
...+...|++++|...++.+.+. .+.+.. .+..+..+|...|++++|++.|++. ...|+. ..+.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 34455666667776666666552 122344 5666666666667777776666665 333322 22210 34
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 047146 510 VELAEIVMENLVRFEPEG 527 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~ 527 (608)
+.++...+++.....|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 445555555555555444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0012 Score=65.67 Aligned_cols=82 Identities=12% Similarity=0.012 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCC---chHHHHHH
Q 047146 475 AGLIREALDLIKSM---------PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRF-----EPEGD---GAYILMTN 536 (608)
Q Consensus 475 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~ 536 (608)
.|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++. +|+.+ ..|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666665543 22333 347888888899999999999999988754 55555 36889999
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 047146 537 IYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 537 ~~~~~g~~~~A~~~~~~m~~ 556 (608)
+|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.4 Score=49.65 Aligned_cols=56 Identities=9% Similarity=-0.040 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047146 262 HNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQG 318 (608)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 318 (608)
-+..+..+.+.+++.....++.. ...+...-.....+....|+..+|.....++=.
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~ 130 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL 130 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Confidence 34445555666666666666655 333443334455555666666555555555433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0036 Score=47.74 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 390 DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 390 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
+...|..+...|...|++++|+..|++..+. .| +...|..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455666666666667777777777666663 33 334566666666667777777666666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0067 Score=60.23 Aligned_cols=91 Identities=7% Similarity=-0.133 Sum_probs=60.8
Q ss_pred cccHHHHHHHHHHhHhhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 047146 439 AGLVEEGCKHFLDMSRVY--NLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM---------PLVPDA-FVWGALLG 502 (608)
Q Consensus 439 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~ 502 (608)
.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666654421 12222 355677777777777777777776665 234543 47888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCCCCc
Q 047146 503 ACKIHAKVELAEIVMENLVRF-----EPEGDG 529 (608)
Q Consensus 503 ~~~~~~~~~~a~~~~~~~~~~-----~p~~~~ 529 (608)
.|...|++++|+.++++++++ +|+.+.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 899999999999999888764 677663
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.012 Score=58.57 Aligned_cols=96 Identities=13% Similarity=-0.081 Sum_probs=60.6
Q ss_pred HHhccccHHHHHHHHHHhHhhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVY--NLQPQ----TEHYGCMVDLFGRAGLIREALDLIKSM---------PLVPD-AFVWG 498 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 498 (608)
.+...|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. +..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566666666666555411 11221 345666666777777777776666654 23443 34777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCch
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRF-----EPEGDGA 530 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~ 530 (608)
.|...|...|++++|+.+++++++. +|+.+.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 8888888899999999888888764 6777643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.12 Score=56.23 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=95.7
Q ss_pred HHHHhCCCchHHHH-HHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcC
Q 047146 195 QAYVKMDYPTEAIL-SFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273 (608)
Q Consensus 195 ~~~~~~g~~~~a~~-~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 273 (608)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+ +.. .-.......|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~-----------~~~---~~f~~~l~~~ 666 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISP-----------DQD---QKFELALKVG 666 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCC-----------CHH---HHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCC-----------Ccc---hheehhhhcC
Confidence 34445677777766 4421 1 112223566666777777777766542 111 1134456789
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 047146 274 NIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDK 353 (608)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (608)
+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...++-+....
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998887764 557899999999999999999999987753 33444455556666666555555544
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhc
Q 047146 354 NHINTDGFIGNALVDMYAKCGRIDQAFGVFRSM 386 (608)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 386 (608)
.|. ++....+|.+.|++++|.+++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 431 133444566677777777664443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0074 Score=55.04 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=68.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhC-CChHH
Q 047146 478 IREALDLIKSM-PLVPD---AFVWGALLGACKI-----HAKVELAEIVMENLVRFEPEG-DGAYILMTNIYSSK-NRWKE 546 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 546 (608)
...|...+++. .+.|+ ...|..+...|.. -|+.++|++.|+++++++|+. ..++..+++.|++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 45565 5577777777877 499999999999999999975 88999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 047146 547 ALKLRKKMKERKVKKTPG 564 (608)
Q Consensus 547 A~~~~~~m~~~~~~~~~~ 564 (608)
|.+.+++.....++..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877765443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.60 E-value=5.3e-05 Score=73.39 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=165.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 047146 151 NVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLS 230 (608)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 230 (608)
.+.+|+.|..++.+.+++.+|.+.|-+ ..|+..|..+|.+..+.|.+++-+..+.-.++..-.|... +.++-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHH
Confidence 456888888888888888888877744 3466778889999999999998888877666654444333 47788
Q ss_pred HhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC------------------------
Q 047146 231 ACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP------------------------ 286 (608)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------ 286 (608)
+|++.+++.+-++++ ..||+.-...+.+-|...|.++.|.-+|..+.
T Consensus 125 ayAk~~rL~elEefl---------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHTSCSSSTTTSTT---------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHhhCcHHHHHHHH---------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877644432 22466556777788888888888888887764
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 047146 287 VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNAL 366 (608)
Q Consensus 287 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (608)
..++.+|-.+-.+|...+++.-|--.--.+.- .|| ....++..|...|.+++-+.+++.-... -.....+|+-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 23677899998999999888766544333321 222 1233455577788888877777766532 24567788888
Q ss_pred HHHhHhcCCHHHHHHHHhhcCC----C-------ChhHHHHHHHHHHHcCChHHHHH
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKC----R-------DVYSYTAMIVGLAIHGKAWKALD 412 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~A~~ 412 (608)
.-.|++- ++++-.+.++..-. | ....|..++-.|.+-..++.|..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8888875 56666665554322 2 45678888888888888887653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.033 Score=53.10 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHhc-----cccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHh---cC--------CHHHHHHH
Q 047146 422 IEPDEVTFVGVLSACSH-----AGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGR---AG--------LIREALDL 484 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g--------~~~~A~~~ 484 (608)
.+.+...|..++++... ..+..+|..+|+++.+ ..|+ ...|..+.-+|.- .+ ....+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35566778877776432 2346889999999987 4675 3455444443321 11 11122332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 485 IKSMP-LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 485 ~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
...+. ...++.++.++...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++....++
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23332 2447888888887788889999999999999999965 45788999999999999999999999876544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0038 Score=60.76 Aligned_cols=240 Identities=10% Similarity=0.028 Sum_probs=159.4
Q ss_pred CchhHHH-HHHHHHccCCchHHHh-hCCCCCcchHHHHHHHHHcCCCccH-HHHHHHHHHCCCCCCceeHHHHHHHHhcc
Q 047146 54 QHQTQIL-YDKIISLSRGNEIENL-SLQNPQVYLYNFIIQCLSNANPLEA-IALYREMLIKGLLPNTYTLPYVLKACWQS 130 (608)
Q Consensus 54 ~~~~~~~-l~~~~~~~g~~~~A~~-~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 130 (608)
..+.+|+ |..++.+.|+..+|.. -+.-.|+..|..+|....+.|.+++ +..+...++..- +...=+.++-+|++.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 3566777 9999999999999988 5556777889999999999999999 666655554422 334446788889988
Q ss_pred CCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCC--------------------CCCCCcchH
Q 047146 131 QSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHP--------------------QAQRDLVSW 190 (608)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~~~~~~~ 190 (608)
+++.+-++++. .|+..-...+-+-|...|.++.|.-+|..+..- --..++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 87765433321 244444455555556666666666555543211 012467889
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHH
Q 047146 191 TTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYL 270 (608)
Q Consensus 191 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 270 (608)
--+-.+|+..+.+.-|.-.--.+.- .|| -...++..|-..|.+++-+.+++..+.. + +....+|+-|.-.|+
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl--E-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL--E-RAHMGMFTELAILYS 274 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS--T-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC--C-chhHHHHHHHHHHHH
Confidence 9999999999988877555444432 122 2334566788889999988888887743 2 226778898888888
Q ss_pred hcCChHHHHHHHccCC----CC-------ChhhHHHHHHHHHhcCChhHHHH
Q 047146 271 KCGNIPSARKVFDEMP----VK-------NVVSWNSMIAGLTHRGQFKEALD 311 (608)
Q Consensus 271 ~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 311 (608)
|- +.++..+.++..- -| ....|.-++-.|.+-.+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 76 4455544443322 22 44568888888888888887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.016 Score=45.46 Aligned_cols=64 Identities=9% Similarity=-0.050 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 492 PDAFVWGALLGACKIHAKVEL---AEIVMENLVRFE-P-EGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|+..+--.+.+++.+.++... ++.+++.+.+.. | ........|+-++.+.|++++|++.++.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334433344444444443333 445555444443 2 122344455555555555555555555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.042 Score=60.00 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
...|..+.+.+.+.|+++.|++.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555555555555555554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.025 Score=42.20 Aligned_cols=75 Identities=9% Similarity=-0.030 Sum_probs=53.6
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 460 PQTEHYGCMVDLFGRAGL---IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 460 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|...|+++.+..|+++ .+..+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~-~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL-DRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC-CHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHHHH
Confidence 456677777777765444 68888888877 4455 566777777888888999999999999888888833 33333
Q ss_pred H
Q 047146 535 T 535 (608)
Q Consensus 535 ~ 535 (608)
.
T Consensus 83 ~ 83 (93)
T 3bee_A 83 I 83 (93)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.027 Score=46.03 Aligned_cols=86 Identities=15% Similarity=-0.018 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHH
Q 047146 441 LVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAG---LIREALDLIKSM-PLV-P--DAFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 441 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a 513 (608)
.+..+.+.|.+... .+ .++..+.-.+.-++++.+ +.++++.+++.. ... | ....+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34445555555444 12 255566666666666666 455676666665 222 4 234455566778999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 047146 514 EIVMENLVRFEPEGD 528 (608)
Q Consensus 514 ~~~~~~~~~~~p~~~ 528 (608)
++.++.+++.+|++.
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 999999999999986
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.068 Score=40.84 Aligned_cols=70 Identities=11% Similarity=0.001 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-----P----LVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
+..+...+.+.|+++.|...++.. + -.+....+..+..++.+.|+++.|...++++.++.|+++.+...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 334555555555555555555443 0 123456778888888999999999999999999999987554443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.37 Score=40.40 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=76.2
Q ss_pred HHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHH
Q 047146 368 DMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCK 447 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 447 (608)
+....+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677888887777766 4567788888888888888888777776543 2333344455566655554
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047146 448 HFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENL 520 (608)
Q Consensus 448 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 520 (608)
+-+..... | -++.-...+.-.|+++++.+++.+.+.-|.... .....|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 43333321 1 133444455567777777777777754332211 223356666666666654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.46 Score=37.92 Aligned_cols=64 Identities=5% Similarity=-0.091 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 492 PDAFVWGALLGACKIHAK---VELAEIVMENLVRFEPEG-DGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|+..+--...+++.++.+ ..+++.+++.+.+..|.. ......|+-++.+.|++++|+++.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344433334444444333 234455555555544432 2344455555555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.84 Score=38.23 Aligned_cols=104 Identities=12% Similarity=0.099 Sum_probs=62.6
Q ss_pred HHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHH
Q 047146 267 DMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKW 346 (608)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 346 (608)
....++|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455677777777776655 3556778888777788888888777776643 2334444455566555555
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC
Q 047146 347 VHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK 387 (608)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 387 (608)
+-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5444443331 1334444555677777777665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.24 Score=52.30 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=51.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 501 LGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 501 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
...|...|+++.|..+.+++...-|.+..+|..|+.+|.+.|+|+.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3557789999999999999999999999999999999999999999999999985
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.061 Score=49.08 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 047146 464 HYGCMVDLFGR-----AGLIREALDLIKSM-PLVPD--AFVWGALLGACKI-HAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 464 ~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~p~ 526 (608)
.|..|...|.+ .|+.++|.+.|++. .+.|+ ..++......++. .|+.+++.+.++++++..|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34444444444 24444444444444 33331 3333334444433 25555555555555554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.14 Score=38.93 Aligned_cols=64 Identities=20% Similarity=0.053 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFE-------PEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
+..-.-.+...+...|+++.|..-++.+.+.. +..+.++..|+.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44455677888999999999999999998763 23345799999999999999999999999975
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=1.6 Score=34.39 Aligned_cols=139 Identities=14% Similarity=0.033 Sum_probs=87.5
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHH
Q 047146 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277 (608)
Q Consensus 198 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 277 (608)
.-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+. ++. ..||++..
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDi--------------s~C~NlKr 79 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL--------------DKCQNLKS 79 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG--------------GGCSCTHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-cCc--------------HhhhcHHH
Confidence 3456666677766666543 24455666665555555555555555444332 221 23555555
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 047146 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356 (608)
Q Consensus 278 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (608)
....+-.+.. +....+.-+.....+|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++..+-+.|+
T Consensus 80 Vi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 80 VVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 5555544432 3445566677788888888888888885442 477888888888888888888888888888777764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.4 Score=37.71 Aligned_cols=64 Identities=5% Similarity=-0.091 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 492 PDAFVWGALLGACKIHAK---VELAEIVMENLVRFEPE-GDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 492 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
|+..+--...+++.+..+ ..+++.+++.+.+..|. ....+..|+-++.+.|++++|++..+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344443334444444433 23455555555555543 23345555666666666666666666655
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.89 E-value=1.5 Score=43.50 Aligned_cols=163 Identities=10% Similarity=0.068 Sum_probs=80.2
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHccCCCCCc---hHHHHHHHHHHHhcCChHHHHHHHccCC------CCC----hhhH
Q 047146 227 IVLSACSKLGDLSLGIKIHRYITDNHFNLSPD---VFIHNALIDMYLKCGNIPSARKVFDEMP------VKN----VVSW 293 (608)
Q Consensus 227 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~----~~~~ 293 (608)
.+...+...|++.+|..++..+...-.+..+. ...+...++.|...+++..|..++.++. .++ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 44555566666666666666665432222111 2455566666777777777766665542 111 1234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChHHHHHHHH----HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 294 NSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLN----SCANIGWLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 294 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
..++..+...+++.+|...|.+.... .+..|...+..++. ...-.+..+.-..+.........-++...+..++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k 301 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVK 301 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHH
Confidence 55566666777777777766665432 11112222211111 11111111111112222222222345566777888
Q ss_pred HhHhc--CCHHHHHHHHhhcCCC
Q 047146 369 MYAKC--GRIDQAFGVFRSMKCR 389 (608)
Q Consensus 369 ~~~~~--g~~~~A~~~~~~~~~~ 389 (608)
+|... .+++.+.+.|.....+
T Consensus 302 ~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 302 LFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHhchHhhhHHHHHHHHHHhcc
Confidence 87654 4567777777765543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.69 Score=36.21 Aligned_cols=89 Identities=13% Similarity=-0.040 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHH
Q 047146 440 GLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE---ALDLIKSM-PLV-P--DAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 512 (608)
..+..+.+.|...... +. |+..+--.+..++.+.....+ ++.+++.. ... | .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444455555554441 22 555555566666777665555 66777666 222 3 12234445577889999999
Q ss_pred HHHHHHHHHhcCCCCCch
Q 047146 513 AEIVMENLVRFEPEGDGA 530 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~~~ 530 (608)
|.+.++.+++..|++..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999999999998743
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.26 Score=39.69 Aligned_cols=53 Identities=13% Similarity=-0.042 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 476 GLIREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 476 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
++.++|.++|+.+ .-+- ...|......-.+.|+.+.|.+++.+++.+.|.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 5666666666665 1111 566666666677788888888888888888777643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.47 E-value=0.37 Score=38.81 Aligned_cols=56 Identities=14% Similarity=-0.065 Sum_probs=46.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKK 561 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 561 (608)
..++.++|.++|+.++.....-+.+|...+..-.+.|+.+.|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 33789999999999988744445678888888889999999999999999877765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.82 E-value=8.3 Score=36.04 Aligned_cols=136 Identities=13% Similarity=-0.007 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCCHhHHHHHH
Q 047146 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSF----FDMCQANLRPDGMILVIVL 229 (608)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~t~~~ll 229 (608)
.+.++..-|.+.+++++|.+++.. + ...+.+.|+...+-++- +...+.++++|..+..-++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~----G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS----V-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH----H-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH----H-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455666678899999999998866 2 33456677776665554 5556678889988888888
Q ss_pred HHhhccCCch-HHHHHHHHH----HHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcC
Q 047146 230 SACSKLGDLS-LGIKIHRYI----TDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRG 304 (608)
Q Consensus 230 ~~~~~~~~~~-~a~~~~~~~----~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 304 (608)
..+.....-+ .-..+.+.+ .+.+....=|+.....+...|.+.+++.+|+..|-.-..++...+..++.-+...+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 7777655322 122333333 33331122277888889999999999999998884322223356655555444444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.01 E-value=9.8 Score=35.29 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHHHHCCCCCCHhHHHHHH
Q 047146 154 VFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILS----FFDMCQANLRPDGMILVIVL 229 (608)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~t~~~ll 229 (608)
.|.++..-|.+.+++++|.+++.. + ...+.+.|+...|-++ ++...+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~----g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ----G-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH----H-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH----H-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 466777778899999999999866 2 3345667777666664 45556678888888888887
Q ss_pred HHhhccCCch-HHHHHHHHHH----HccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhc
Q 047146 230 SACSKLGDLS-LGIKIHRYIT----DNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHR 303 (608)
Q Consensus 230 ~~~~~~~~~~-~a~~~~~~~~----~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 303 (608)
..+.....-+ .-.++.+.++ +.+....-++..+..+...|.+.|++.+|+..|-.-...|...+..++.-+...
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 7766533211 2233444444 332211227788999999999999999999877533222455555555544444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.33 E-value=3.5 Score=30.51 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=44.9
Q ss_pred HHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 478 IREALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 478 ~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
.=+..+-++.+ ..-|++.+..+.+++|.+.+++..|.++++.+...-.+...+|-.++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 33444444443 67899999999999999999999999999999877555555677665
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.24 E-value=1.9 Score=35.42 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047146 462 TEHYGCMVDLFGRAGLIREALDLIKSMP 489 (608)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 489 (608)
.+.---+..+|.+.|++++|+.+++.++
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444456677777777777777777774
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.14 E-value=21 Score=35.16 Aligned_cols=180 Identities=11% Similarity=0.095 Sum_probs=84.2
Q ss_pred CChHHHHHHHccCC-----CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChHHHHHHHHHHh----cc
Q 047146 273 GNIPSARKVFDEMP-----VK----NVVSWNSMIAGLTHRGQFKEALDIFRRMQGL-GLKPDDFTLVCVLNSCA----NI 338 (608)
Q Consensus 273 g~~~~A~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~----~~ 338 (608)
|+++.|++.+-.+. .. .......++..|...|+++...+.+.-+... |..+ .....++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 56666766554332 11 2334556677777777777776666555432 2222 12223333221 22
Q ss_pred CChHHHHH--HHHHHH--HcC-CCC---chhHHHHHHHHhHhcCCHHHHHHHHhhcCC----C-----ChhHHHHHHHHH
Q 047146 339 GWLELGKW--VHTYLD--KNH-INT---DGFIGNALVDMYAKCGRIDQAFGVFRSMKC----R-----DVYSYTAMIVGL 401 (608)
Q Consensus 339 ~~~~~a~~--~~~~~~--~~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~li~~~ 401 (608)
...+.-.. +...+. ..| +-. .......|...|...|++.+|.+++..+.. . -+..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221111 111100 001 001 112234556666666666666666665541 1 123455555666
Q ss_pred HHcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 402 AIHGKAWKALDIFSEMSQ----VGIEPDE--VTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 402 ~~~~~~~~A~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
...+++.+|..+++++.. ....|+. ..+...+..+...+++.+|.+.|.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 666666666666666532 1111211 2334444455556666666666655544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.95 E-value=2.5 Score=31.22 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 406 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
+.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.+..+.+- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 34466777777777888999999999999999999999999999988875443 3456766654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.84 E-value=17 Score=41.12 Aligned_cols=167 Identities=8% Similarity=-0.021 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC
Q 047146 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340 (608)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 340 (608)
....++..+.+.+..+.+.++..-.+. +...--.+..+|...|++++|.+.|.+.-. |+..+..... .
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~----------~ 881 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------V 881 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCS----------S
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhh----------h
Confidence 344566677778888888776655543 444445566788899999999999977522 2222211000 0
Q ss_pred hHHHHHHHHHHHHcC--CCCchhHHHHHHHHhHhcCCHHHHHHHHhhc----CCCCh----hHHHHHHHHHHHcCChHHH
Q 047146 341 LELGKWVHTYLDKNH--INTDGFIGNALVDMYAKCGRIDQAFGVFRSM----KCRDV----YSYTAMIVGLAIHGKAWKA 410 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~li~~~~~~~~~~~A 410 (608)
... +..+.... ...-..-|.-++..+.+.|.++.+.++-... ...+. ..|..+..++...|++++|
T Consensus 882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 000 00111110 1122334566677777777777666554422 22221 2588888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH
Q 047146 411 LDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 411 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 445 (608)
...+-.+..... -...+..++..++..|..+.-
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 888887776433 345677777777766665543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.78 E-value=18 Score=33.83 Aligned_cols=168 Identities=13% Similarity=0.016 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCChHHHHHHHHHHh
Q 047146 261 IHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIF----RRMQGLGLKPDDFTLVCVLNSCA 336 (608)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 336 (608)
.+.++..=|.+.+++++|++++.. -...+.+.|+...+.++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445555567888888888877522 233455667766555544 55566678888887777777776
Q ss_pred ccCChH-HHHHHHHHH----HHcC--CCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 047146 337 NIGWLE-LGKWVHTYL----DKNH--INTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWK 409 (608)
Q Consensus 337 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 409 (608)
....-+ .=..+.+.+ .+.| ..-|+.....+...|.+.+++.+|+..|-.-.++....+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 554321 112222222 3333 345677778889999999999999998853222233566555544443332111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 410 ALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 410 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
++...-..+ --|.-.+++..|..++....+
T Consensus 186 --------------~dlfiaRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 111222222 235556788888777666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.61 E-value=35 Score=37.00 Aligned_cols=262 Identities=10% Similarity=-0.015 Sum_probs=119.7
Q ss_pred HhcCCHHHHHHHhcccCCCCCCCC--cchHHHHHHHHHhCCCchHHHHHHHHHHHCCC--C-----CCHhHHH--HHHHH
Q 047146 163 AVCGLIKAVHKLFHFRQHPQAQRD--LVSWTTLIQAYVKMDYPTEAILSFFDMCQANL--R-----PDGMILV--IVLSA 231 (608)
Q Consensus 163 ~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~-----p~~~t~~--~ll~~ 231 (608)
...|+.++++.+++.........+ +..=..+.-+.+..|..+++++++.......- . +....-. .+.-+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 344566666666665322110111 11223334455666666667776666544211 0 0011111 22222
Q ss_pred hhccCCchHHHHHHHHHHHccCCCCCchH----HHHHHHHHHHhcCChHHHHHHHccCC-CCChhh--HHHHHHHHHhcC
Q 047146 232 CSKLGDLSLGIKIHRYITDNHFNLSPDVF----IHNALIDMYLKCGNIPSARKVFDEMP-VKNVVS--WNSMIAGLTHRG 304 (608)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~--~~~li~~~~~~g 304 (608)
+...++ +++...+..++... +.. .--+|...+.-.|+-+....++..+. ..+... .-++.-++...|
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd-----~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYND-----SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred hcCCCC-HHHHHHHHHHHhcC-----CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 222333 34444444444431 211 11223333445566555555554432 112222 223333455667
Q ss_pred ChhHHHHHHHHHHhCCCCCChHHHH--HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047146 305 QFKEALDIFRRMQGLGLKPDDFTLV--CVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382 (608)
Q Consensus 305 ~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 382 (608)
+.+.+..+++.+.... .|....-. .+.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777776531 22222111 23345667778777777777776542 12222222222233345666666777
Q ss_pred HhhcC-CCChhHHH--HHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047146 383 FRSMK-CRDVYSYT--AMIVGLAIHGKA-WKALDIFSEMSQVGIEPDEVTFVGVLSA 435 (608)
Q Consensus 383 ~~~~~-~~~~~~~~--~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 435 (608)
++.+. ..|..+-. ++..+....|.. .+++.++..+.. .+|..+-...+.+
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIA 670 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHH
Confidence 66544 23333322 233334444443 567778888764 4555443333333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.79 E-value=3 Score=44.08 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=36.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHh
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEPDE-VTFVGVLSACSHAGLVEEGCKHFLDM 452 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 452 (608)
-+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|.-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567777778777777776 46654 47777777888888888877776665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.53 E-value=2.1 Score=41.66 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCccCCc
Q 047146 499 ALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE-----RKVKKTPG 564 (608)
Q Consensus 499 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 564 (608)
.++.++...|+++++...++.+...+|-+...|..++.+|.+.|+..+|++.|++..+ -|+.|.+.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3445556667777777777777777777666777777777777777777766666542 35555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.74 E-value=8.2 Score=30.30 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=41.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 486 KSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 486 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
-.+.+-|++.+..+.+++|.+.+|+..|.++++-+...-.+...+|-.++
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33478899999999999999999999999999999877554455777665
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.67 E-value=9.9 Score=27.94 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=63.6
Q ss_pred CCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047146 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315 (608)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 315 (608)
..-++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.+
T Consensus 20 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 345677777777766531 23333333456778999999999999999999999988754 478888999988888
Q ss_pred HHhCCCCCChHHHH
Q 047146 316 MQGLGLKPDDFTLV 329 (608)
Q Consensus 316 m~~~g~~p~~~t~~ 329 (608)
+..+| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 88877 56555554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.40 E-value=30 Score=33.30 Aligned_cols=58 Identities=7% Similarity=-0.109 Sum_probs=25.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccccHHHHHHHHHHhHh
Q 047146 397 MIVGLAIHGKAWKALDIFSEMSQVGIEPDE-----VTFVGVLSACSHAGLVEEGCKHFLDMSR 454 (608)
Q Consensus 397 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 454 (608)
++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+.....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 444455555555555555555432111111 1233333344455555555555544433
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=84.31 E-value=15 Score=38.25 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHh
Q 047146 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVK 199 (608)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 199 (608)
-++|-.+.|+|++++|.++.++.... .+.-...+-..+..|+.
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 35566677777777777776652211 11111345555555553
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.18 E-value=11 Score=27.85 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047146 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315 (608)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 315 (608)
..-++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.+
T Consensus 21 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 346677777777766531 23333333455778999999999999999999999988754 477888888888888
Q ss_pred HHhCCCCCChHHHH
Q 047146 316 MQGLGLKPDDFTLV 329 (608)
Q Consensus 316 m~~~g~~p~~~t~~ 329 (608)
+...| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 88776 56555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.12 E-value=9.5 Score=31.37 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=14.1
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHH
Q 047146 225 LVIVLSACSKLGDLSLGIKIHRYITD 250 (608)
Q Consensus 225 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 250 (608)
+..+..++...+++..|...|+.+++
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44445555555666666655555443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=83.87 E-value=20 Score=30.77 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=31.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 047146 362 IGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGL 441 (608)
Q Consensus 362 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 441 (608)
+-...+.++.+.|+.+....+.+.+..++...-...+.++...+.. ++...+.++.. .++..+-...+.++.+.+.
T Consensus 97 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 3334444444444433333333333444444444444444444442 23333333332 3444444444444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.53 E-value=7.9 Score=37.51 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHh----hcCCCCChhH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSR----VYNLQPQTEH 464 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 464 (608)
..++..+...|++++++..+..+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556667778888888777777764 133666888888888888888888887777644 3577776654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.13 E-value=29 Score=32.12 Aligned_cols=166 Identities=7% Similarity=-0.023 Sum_probs=102.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDI----FSEMSQVGIEPDEVTFVGVLSACSHA 439 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~ 439 (608)
.++..=|.+.+++++|.+++.. -...+.++|+...|.++ ++-..+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 4566678888899999887553 23446667877665554 55556678888888888777776553
Q ss_pred cc-----HHHHHHHHHHhHhhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC
Q 047146 440 GL-----VEEGCKHFLDMSRVYNL--QPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH---AK 509 (608)
Q Consensus 440 g~-----~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~~ 509 (608)
.. .+-..+..+...+ .|- .-++.....+...|.+.|++.+|...|-.. ..-|...+..++.-+... |.
T Consensus 106 p~~~~~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIK-FSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHH-TSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCchHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCCC
Confidence 21 1112222222222 222 236778888999999999999999877632 112455565555444444 44
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 510 VELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 510 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..++--++ ...+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 43332221 2233446678899999999888754
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.95 E-value=12 Score=27.53 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554443 22222222345667899999999999999999999977744 467888888888878877
Q ss_pred CCCCCCHHHHH
Q 047146 420 VGIEPDEVTFV 430 (608)
Q Consensus 420 ~g~~p~~~~~~ 430 (608)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 75 55444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.63 E-value=5.4 Score=31.27 Aligned_cols=62 Identities=15% Similarity=0.271 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 407 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 345666677777778899999999999999999999999999999887543 44556776664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.50 E-value=6.4 Score=44.48 Aligned_cols=65 Identities=6% Similarity=-0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-----AYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
..|..++..+.+.+.++.+.++...+++..+.+.. .|..+...+...|++++|...+-.+.+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 34555666666777777777776666655432221 455666666777777777666666654443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.42 E-value=22 Score=30.19 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCC
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQ 305 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 305 (608)
|..+....+..+.+.+..+....+.+.+..++...-...+.++...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 344444444444444443333333333334444333333444444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.05 E-value=16 Score=29.09 Aligned_cols=70 Identities=7% Similarity=-0.012 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 459 QPQTEHYGCMVDLFGRAGLIR---EALDLIKSM-PLVP-DA-FVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 459 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.|+..+--.+..++.++...+ +++.+++.. ...| +. ...-.+.-++.+.|++++|++..+.+++.+|++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 345555444555555555433 455555555 2223 22 2333455678999999999999999999999986
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.85 E-value=17 Score=32.61 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=65.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChh----HHHHHHHHHHh
Q 047146 400 GLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTE----HYGCMVDLFGR 474 (608)
Q Consensus 400 ~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~ 474 (608)
...+.|..++|++....-++. .| |...-..++..+|-.|++++|.+-++...+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 445667777777777776664 44 555666667777777888888777776655 344432 33333322
Q ss_pred cCCHHHHH-HHHHhC--C--CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCc
Q 047146 475 AGLIREAL-DLIKSM--P--LVPDAFVWGALLGA--CKIHAKVELAEIVMENLVRFEPEGDG 529 (608)
Q Consensus 475 ~g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 529 (608)
+... ++|..- + +.....-...++.+ ....|+.++|..+-+++.+.-|..+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 122211 1 11122223333333 34567888888887777777766654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=81.73 E-value=24 Score=30.21 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=34.5
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 358 TDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
++..+-...+.++.+.|..+....+...+..++...-...+.++.+.+. .++...+.++..
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4444555556666666655444444444555666666666666666665 445555555554
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=81.29 E-value=47 Score=34.48 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=16.1
Q ss_pred HhcCCHHHHHHHHHhCCCCCC
Q 047146 473 GRAGLIREALDLIKSMPLVPD 493 (608)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~p~ 493 (608)
...|+++.|++.++++++-|.
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC
T ss_pred HHcCCHHHHHHHHHhCCCCCC
Confidence 677888888888888866663
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=80.78 E-value=14 Score=33.25 Aligned_cols=17 Identities=0% Similarity=-0.060 Sum_probs=8.9
Q ss_pred HHhHhcCCHHHHHHHHh
Q 047146 368 DMYAKCGRIDQAFGVFR 384 (608)
Q Consensus 368 ~~~~~~g~~~~A~~~~~ 384 (608)
...++.|+.+-+..+++
T Consensus 224 ~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33344556655555555
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.21 E-value=15 Score=27.01 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047146 340 WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQ 419 (608)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 419 (608)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555555443 22222222345667899999999999999999999987754 356777888888878777
Q ss_pred CCCCCCHHHHH
Q 047146 420 VGIEPDEVTFV 430 (608)
Q Consensus 420 ~g~~p~~~~~~ 430 (608)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 55444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 608 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 43/357 (12%), Positives = 93/357 (26%), Gaps = 23/357 (6%)
Query: 265 LIDMYLKCGNIPSARKVFDEM----PVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG 320
L + G+ +A + ++ P N + + + + +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLA--IK 61
Query: 321 LKPDDFTLVCVL-NSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379
P L N G L+ + + + + N + A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 380 FGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC-SH 438
+++ +G + + + +P+ L +
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 439 AGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSMP--LVPDAF 495
G + H + L P + Y + ++ A + A+ A
Sbjct: 182 QGEIWLAIHH---FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKK-M 554
V G L ++LA + +P AY + N K EA +
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 555 KERKVKKTPGCSLVEVY---GEFYE----FRKGDKSHPKTLEIYKLLDEIMHQSKNH 604
+ +L + G E +RK + P+ + L ++ Q
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 608 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.94 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.91 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.74 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.74 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.3 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.29 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.2 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.18 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.96 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.85 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.81 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.67 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.36 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.32 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.28 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.12 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.98 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.94 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.36 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.04 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.25 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.27 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.16 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.64 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.1e-21 Score=190.77 Aligned_cols=372 Identities=13% Similarity=0.079 Sum_probs=219.0
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCC
Q 047146 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274 (608)
Q Consensus 195 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 274 (608)
..+.+.|++++|++.++++.+.. +-+...+..+...+...|++++|...++.+++..+. +..++..+..+|.+.|+
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHhhhhcc
Confidence 33445556666666665555432 113344555555555666666666666666555433 44555566666666666
Q ss_pred hHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q 047146 275 IPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYL 351 (608)
Q Consensus 275 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 351 (608)
+++|...+.... ..+...+..........+....+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 666666655543 2223333333444444444444444444443332 222333333344444555555555555544
Q ss_pred HHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047146 352 DKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVT 428 (608)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 428 (608)
.... +.+...+..+...+...|++++|...+++.. ..+...|..+...+...|++++|+..+++....+ ..+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 4433 2334455556666666777777777666543 2345566666777777777777777777766642 334456
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 047146 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM--PLVPDAFVWGALLGACK 505 (608)
Q Consensus 429 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 505 (608)
+..+...+.+.|++++|...|+++.+ +.| +...+..+...+...|++++|++.++.. ..+.+...+..+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 66666677777777777777777665 233 4566667777777777777777777665 22335566666667777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCC
Q 047146 506 IHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEFYEFRKGDKSHP 585 (608)
Q Consensus 506 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 585 (608)
..|++++|...++++++..|+++.++..++.+|.+.|++++|++.+++..+ .+|
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------l~P 370 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISP 370 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCC
Confidence 777777777777777777777777777777777777777777777777653 346
Q ss_pred ChhHHHHHHHHHHHHHh
Q 047146 586 KTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 586 ~~~~~~~~l~~~~~~~~ 602 (608)
++++++..|..++.+++
T Consensus 371 ~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 371 TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 66677777776666553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.2e-21 Score=191.89 Aligned_cols=372 Identities=12% Similarity=0.014 Sum_probs=260.0
Q ss_pred HHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchH
Q 047146 161 LYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSL 240 (608)
Q Consensus 161 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 240 (608)
.+.+.|++++|.+.|+++.+.. +.++..+..+...+.+.|++++|+..|++..+.. +-+..++..+..++...|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 3445566666666555543322 1234455555566666666666666666655432 1133455556666666666666
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047146 241 GIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ 317 (608)
Q Consensus 241 a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 317 (608)
|...+....+.... +..............+....+........ .................+....+...+.+..
T Consensus 86 A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 66666666655322 33333333444444444333333332221 2333444445555566666666666666665
Q ss_pred hCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC---CCChhHH
Q 047146 318 GLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK---CRDVYSY 394 (608)
Q Consensus 318 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 394 (608)
... +.+...+..+...+...|+++.|...+....+.. +.+...+..+..++...|++++|...++... ..+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence 542 2334555666666777777777777777766654 3345667788888899999999998888765 3566778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFG 473 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 473 (608)
..+...+.+.|++++|+..|++..+ +.|+ ..++..+...+...|++++|.+.++.... ..+.+...+..+...+.
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHH
Confidence 8888999999999999999999988 4564 56888899999999999999999999877 34556788899999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 474 RAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 474 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
+.|++++|++.+++. ...| +..++..+..++...|++++|...++++++++|+++.+|..|+.+|.+.|+
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999987 6667 567888899999999999999999999999999999999999999998885
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.2e-13 Score=130.26 Aligned_cols=242 Identities=13% Similarity=-0.008 Sum_probs=159.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047146 294 NSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKC 373 (608)
Q Consensus 294 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (608)
-.....+.+.|++++|+..|++..+.. +-+..++..+..++...|+++.|...+..+.+.. +.+...+..+..+|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345566778888888888888887753 2234566666666666666666666666655543 22344445555555555
Q ss_pred CCHHHHHHHHhhcCC--CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 047146 374 GRIDQAFGVFRSMKC--RDVY-SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFL 450 (608)
Q Consensus 374 g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 450 (608)
|++++|.+.++.... |+.. .+....... ...+.......+..+...+...++...+.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 555555555554321 1100 000000000 00000011112223345567778888888
Q ss_pred HhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 451 DMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 451 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.+.+...-.++...+..+...+...|++++|+..+++. ...| +...|..+...+...|++++|.+.++++++.+|+++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 87764333445677888889999999999999999887 4445 577888899999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 529 GAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 529 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.+|..++.+|.+.|++++|++.|++..+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.4e-13 Score=129.96 Aligned_cols=267 Identities=12% Similarity=0.020 Sum_probs=196.1
Q ss_pred HHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCC
Q 047146 264 ALIDMYLKCGNIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGW 340 (608)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 340 (608)
.....+.+.|++++|+..|+++. +.+..+|..+..++...|++++|+..|++..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 45667889999999999999875 3457789999999999999999999999998853 3356778888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047146 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV 420 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 420 (608)
++.|.+.+..+......... ......... . ..+.......+..+...+.+.+|...+.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAH-LVTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGG-GCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHH-HHHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999988775422111 000000000 0 001111111222344556677888888887764
Q ss_pred CC-CCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 047146 421 GI-EPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVW 497 (608)
Q Consensus 421 g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 497 (608)
.. .++..++..+...+...|++++|...++..... .+-+...|..+...|.+.|++++|++.+++. ...| +..+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 22 234567888888899999999999999998773 2235778899999999999999999999987 5555 67789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-----------hHHHHHHHHHhCCChHHHHHH
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRFEPEGDG-----------AYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 550 (608)
..+..+|.+.|++++|+..+++++++.|++.. .|..+..++...|+.+.+...
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999887754 355667777777777655433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.7e-08 Score=96.64 Aligned_cols=193 Identities=11% Similarity=0.036 Sum_probs=122.4
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcC-------CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHH
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMK-------CR----DVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIE----PDEVT 428 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~----p~~~~ 428 (608)
..+...+...|++..|...+.... .+ ....+..+...+...|+++.+...+......... ....+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 444556666677666666655432 11 1124445566777788888888887777653221 12234
Q ss_pred HHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHH
Q 047146 429 FVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-----TEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-----DAFVW 497 (608)
Q Consensus 429 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~ 497 (608)
+......+...++...+...+............ ...+..+...+...|++++|...++.. ...| ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 455555666777777777777665542221111 234556667777888888888888776 2221 23455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 498 GALLGACKIHAKVELAEIVMENLVRF------EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 498 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+..++...|++++|...+++++.. .|....++..++.+|.+.|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677788888888888888887643 233445778888888888888888888887654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=2.1e-09 Score=101.09 Aligned_cols=222 Identities=8% Similarity=0.043 Sum_probs=117.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 047146 327 TLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCG-RIDQAFGVFRSMK---CRDVYSYTAMIVGLA 402 (608)
Q Consensus 327 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 402 (608)
.+..+-..+.+.+..++|.+.++.+++.+ +.+...|+....++...| ++++|+..++... ..+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 33344444555566666666666666654 334445555555555544 3666666666543 234556666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCC---
Q 047146 403 IHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGL--- 477 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--- 477 (608)
..|++++|+..++++.+. .| +...|..+...+.+.|++++|.+.++.+.+ +.| +...|+.+..++.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred hhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccch
Confidence 666666666666666653 34 344666666666666666666666666655 233 34455555555444443
Q ss_pred ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHhC--CChHHHH
Q 047146 478 ---IREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG--AYILMTNIYSSK--NRWKEAL 548 (608)
Q Consensus 478 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~ 548 (608)
+++|++.+... ...| +...|..+...+.. ...+++.+.++.+.++.|+... .+..++.+|... +..+.+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34555555544 3333 44455544444332 2345555666666655554332 233444444332 4444455
Q ss_pred HHHHHHH
Q 047146 549 KLRKKMK 555 (608)
Q Consensus 549 ~~~~~m~ 555 (608)
..+++..
T Consensus 278 ~~~~ka~ 284 (315)
T d2h6fa1 278 DILNKAL 284 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=2.9e-08 Score=93.06 Aligned_cols=185 Identities=10% Similarity=0.006 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCC--C-C-hhHHHHHHHHHHHcCChHHHHHHHHH
Q 047146 341 LELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKC--R-D-VYSYTAMIVGLAIHGKAWKALDIFSE 416 (608)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~A~~~~~~ 416 (608)
.+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+.+.. | + ...|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455666666666554455555666666667777777777777766542 2 2 23566667777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHH-HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCC
Q 047146 417 MSQVGIEPDEVTFVGVLSA-CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM----PLV 491 (608)
Q Consensus 417 m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 491 (608)
+.+.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|+++.|..+|++. +..
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 66642 1222333332222 23346677777777777662 3334566666777777777777777777665 233
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 492 PD--AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 492 p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
|+ ...|...+..-..+|+.+.+..+.+++.+..|...
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 32 34666666666666777777777776666666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=4.6e-08 Score=93.42 Aligned_cols=290 Identities=10% Similarity=0.012 Sum_probs=162.7
Q ss_pred HHhhccCCchHHHHHHHHHHHccCCCCCc--hHHHHHHHHHHHhcCChHHHHHHHccCCC-----CC----hhhHHHHHH
Q 047146 230 SACSKLGDLSLGIKIHRYITDNHFNLSPD--VFIHNALIDMYLKCGNIPSARKVFDEMPV-----KN----VVSWNSMIA 298 (608)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~ 298 (608)
..+...|++++|.+.++..++..+...+. ..++..+..+|...|++++|...|++... ++ ...+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 34556677777777777766653321000 12444455556666666666666554431 11 112333444
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHhHhcCC
Q 047146 299 GLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINT---DGFIGNALVDMYAKCGR 375 (608)
Q Consensus 299 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~ 375 (608)
.+...|++..+...+.+..... ...+... ....+..+...+...|+
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~ 148 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWAWAR 148 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------------------------------HhcccchhhHHHHHHHHHHHHHHHhcc
Confidence 4455555555555554432210 0111111 11233445556666777
Q ss_pred HHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhcccc
Q 047146 376 IDQAFGVFRSMKC--------RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV----GIEPD--EVTFVGVLSACSHAGL 441 (608)
Q Consensus 376 ~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~ 441 (608)
++.+...+..... .....+..+...+...+++.++...+.+.... +..+. ...+......+...|+
T Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T d1hz4a_ 149 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 228 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhccc
Confidence 7777666655431 12234445556666777777777777665432 11111 1234555566778888
Q ss_pred HHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHH
Q 047146 442 VEEGCKHFLDMSRVYNLQP--QTEHYGCMVDLFGRAGLIREALDLIKSM-------PLVPD-AFVWGALLGACKIHAKVE 511 (608)
Q Consensus 442 ~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~ 511 (608)
+++|...+........-.+ ....+..+..++...|++++|...+++. +..|+ ...+..+...+...|+++
T Consensus 229 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 229 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 8888888887765211111 2344566788888888888888888765 33343 346677778889999999
Q ss_pred HHHHHHHHHHhcCCCC---------CchHHHHHHHHHhCCChHHHHHH
Q 047146 512 LAEIVMENLVRFEPEG---------DGAYILMTNIYSSKNRWKEALKL 550 (608)
Q Consensus 512 ~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~ 550 (608)
+|...+++++++.+.. ...+..+...+...++.+++.+-
T Consensus 309 ~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 309 DAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999888764321 12344455566677777766543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=2.1e-09 Score=98.21 Aligned_cols=89 Identities=13% Similarity=0.051 Sum_probs=47.1
Q ss_pred HHHHHHhHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 047146 364 NALVDMYAKCGRIDQAFGVFRSMK---CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHA 439 (608)
Q Consensus 364 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 439 (608)
..+..+|.+.|++++|...|++.. ..++.+|+.+..+|.+.|++++|+..|+++.+. .|+ ..++..+..++...
T Consensus 41 ~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 118 (259)
T d1xnfa_ 41 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYG 118 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHH
Confidence 334445555555555555555443 234455555555555555555555555555552 332 23455555555555
Q ss_pred ccHHHHHHHHHHhHh
Q 047146 440 GLVEEGCKHFLDMSR 454 (608)
Q Consensus 440 g~~~~a~~~~~~~~~ 454 (608)
|++++|...|+...+
T Consensus 119 g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 119 GRDKLAQDDLLAFYQ 133 (259)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=1e-09 Score=104.72 Aligned_cols=231 Identities=6% Similarity=-0.146 Sum_probs=157.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH
Q 047146 302 HRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIG--WLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQA 379 (608)
Q Consensus 302 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 379 (608)
..|++++|+..+++..+.. +-+...+..+..++...+ +++.+...+..+...........+......+...+..++|
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 3445666777777766542 223344444444444443 4667777777666654333233334455677778999999
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhc
Q 047146 380 FGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVY 456 (608)
Q Consensus 380 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 456 (608)
...++.... .+...|+.+...+.+.|++++|...+++.... .|+.. .+...+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~-- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL-- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--
Confidence 999988774 35678888888899999888876665544431 22221 223334455666677777777665
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 047146 457 NLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILM 534 (608)
Q Consensus 457 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 534 (608)
.-+++...+..++..+...|+.++|...+.+. ...| +..+|..+...+...|++++|...++++.+++|.....|..|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 23345556667778888889999999988877 5556 456778888899999999999999999999999988888888
Q ss_pred HHHHHh
Q 047146 535 TNIYSS 540 (608)
Q Consensus 535 ~~~~~~ 540 (608)
...+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 777653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1.2e-08 Score=93.12 Aligned_cols=219 Identities=11% Similarity=-0.054 Sum_probs=133.9
Q ss_pred hhHHHHHHHHHHhCCC-CC--ChHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047146 306 FKEALDIFRRMQGLGL-KP--DDFTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGV 382 (608)
Q Consensus 306 ~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 382 (608)
.+.++.-+++...... .+ ...++..+...+.+.|+++.|...+...++.. +.++.+++.+..+|.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555544321 11 11244445556666777777777777666654 34566778888888899999999998
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHhHhhcCC
Q 047146 383 FRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNL 458 (608)
Q Consensus 383 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 458 (608)
|++..+ .+..+|..+...|...|++++|...|++..+. .|+ ......+..++.+.+..+....+...... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 168 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S 168 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---c
Confidence 887762 35667888888999999999999999998874 443 33444444445555555555555444443 2
Q ss_pred CCChhHHHHHHHHHHhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 459 QPQTEHYGCMVDLFGRAGL----IREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 459 ~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
.+....++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|++++|...++++++.+|++...|
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 22222222 2222222222 22222222111 12232 34666778889999999999999999999999876444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=1.2e-07 Score=88.68 Aligned_cols=183 Identities=10% Similarity=-0.007 Sum_probs=145.1
Q ss_pred CCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 047146 374 GRIDQAFGVFRSMK----CRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 374 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++...........|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44577888887643 34567888889999999999999999999987432222447889999999999999999999
Q ss_pred HHhHhhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 047146 450 LDMSRVYNLQPQTEHYGCMVDL-FGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 450 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 526 (608)
.++.+. .+.+...|...+.. +...|+.+.|..+|+.+ ...| +...|...+......|+++.|+.+|+++++..|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999772 23344555554444 34468999999999998 3233 6789999999999999999999999999998776
Q ss_pred CCc----hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 527 GDG----AYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 527 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
++. .|...+..-...|+.+.+.++.+++.+.-
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 543 68888888889999999999999987643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3.8e-08 Score=92.27 Aligned_cols=205 Identities=9% Similarity=0.061 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047146 291 VSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDD-FTLVCVLNSCANIG-WLELGKWVHTYLDKNHINTDGFIGNALVD 368 (608)
Q Consensus 291 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 368 (608)
..++.+...+.+.+.+++|+++++++++. .|+. ..|.....++...| ++++|...++.+++.. +-+..+|..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 45677777888899999999999999986 4555 45666666667665 5899999999988876 456778888889
Q ss_pred HhHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc-----
Q 047146 369 MYAKCGRIDQAFGVFRSMKC---RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHA----- 439 (608)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~----- 439 (608)
++.+.|++++|+..++.+.+ .+...|..+...+...|++++|+..++++.+. .| +...|+.+...+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence 99999999999999998763 46789999999999999999999999999984 56 455776665554443
Q ss_pred -ccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 047146 440 -GLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM----PLVPDAFVWGALLGAC 504 (608)
Q Consensus 440 -g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 504 (608)
+.+++|.+.+..+.+ ..| +...|..+...+...| .+++.+.++.. +...+...+..+...+
T Consensus 199 ~~~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHH---hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 347888888888876 244 5777777776665544 45666655554 3233455555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=8.6e-08 Score=74.87 Aligned_cols=89 Identities=17% Similarity=0.099 Sum_probs=72.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChH
Q 047146 468 MVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWK 545 (608)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 545 (608)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 356677788888888888877 4445 66778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 047146 546 EALKLRKKMKE 556 (608)
Q Consensus 546 ~A~~~~~~m~~ 556 (608)
+|+..+++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888888874
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=1.6e-08 Score=96.14 Aligned_cols=225 Identities=7% Similarity=-0.081 Sum_probs=134.8
Q ss_pred ChHHHHHHHccCC---CCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChHHHH-HHHHHHhccCChHHHHHH
Q 047146 274 NIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQ--FKEALDIFRRMQGLGLKPDDFTLV-CVLNSCANIGWLELGKWV 347 (608)
Q Consensus 274 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~ 347 (608)
++++|+.+++... +.+...|..+..++...++ +++|+..+.+..+.. +++...+. .....+...+..+.|...
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence 3455555555543 3344555555555554443 566666666666542 22333332 233444556666666666
Q ss_pred HHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 047146 348 HTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEV 427 (608)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 427 (608)
++.+++.+ +.+...++.+..++.+.|++++|...+.....-.... ......+...+..+++...+....... .++..
T Consensus 167 ~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~ 243 (334)
T d1dcea1 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLF 243 (334)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSS
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhh
Confidence 66665554 2455666677777777777776655544433211111 122333455666777777777777642 33444
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGAC 504 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 504 (608)
.+..+...+...|+.++|...+..... ..| +...+..+..+|.+.|+.++|.+.++.. .+.|+ ...|..+...+
T Consensus 244 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 244 RCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 566666677778888888888877755 334 4567788888888899999999988887 55663 45666665444
Q ss_pred H
Q 047146 505 K 505 (608)
Q Consensus 505 ~ 505 (608)
.
T Consensus 321 ~ 321 (334)
T d1dcea1 321 L 321 (334)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2e-07 Score=77.43 Aligned_cols=106 Identities=14% Similarity=-0.002 Sum_probs=61.0
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIH 507 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 507 (608)
..-...|.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|+..|+.+ ...| +...|..+..++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 33344556666666666666666552 1224555666666666666666666666655 3334 445666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 047146 508 AKVELAEIVMENLVRFEPEGDGAYILMTNI 537 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 537 (608)
|++++|...++++.++.|+++.++..+..+
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 666666666666666666665555544433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=1e-07 Score=82.91 Aligned_cols=115 Identities=8% Similarity=-0.172 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 047146 424 PDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALL 501 (608)
Q Consensus 424 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 501 (608)
|+...+......+.+.|++++|+..|.++... -+.+...|..+..+|.+.|++++|+..|+.. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66666777777777888888888888777662 2235667777777777778888887777776 5556 456777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 047146 502 GACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSS 540 (608)
Q Consensus 502 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 540 (608)
.++...|++++|...+++++++.|++...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 777777777777777777777777655544444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=7.5e-07 Score=76.32 Aligned_cols=140 Identities=11% Similarity=-0.045 Sum_probs=98.6
Q ss_pred HHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHHH
Q 047146 367 VDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAGLVEEG 445 (608)
Q Consensus 367 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 445 (608)
...+...|+++.|.+.|.++..++..+|..+..+|...|++++|++.|++..+. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 345677889999999999888888888888889999999999999999998884 554 45888888888899999999
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 047146 446 CKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFE 524 (608)
Q Consensus 446 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 524 (608)
.+.|++.... .+++... .|...|. ...++ ..++..+..++...|++++|.+.++++.++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888887651 1111100 0000000 01111 2344556667778888888888888888877
Q ss_pred CCC
Q 047146 525 PEG 527 (608)
Q Consensus 525 p~~ 527 (608)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=3.2e-07 Score=71.49 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=83.8
Q ss_pred HHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 047146 433 LSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKV 510 (608)
Q Consensus 433 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 510 (608)
...+...|++++|+..|..+.+. -+.+...|..+..+|.+.|++++|+..++.. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 55677788888888888888762 2335677888888888888888888888877 4344 777888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 511 ELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 511 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
++|+..++++++..|+++..+..+..+-.
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999877777766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.49 E-value=2.1e-07 Score=71.93 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
-.+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788899999999999987 4556 688999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 047146 544 WKEALKLRKKMK 555 (608)
Q Consensus 544 ~~~A~~~~~~m~ 555 (608)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999863
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1e-06 Score=75.46 Aligned_cols=120 Identities=12% Similarity=-0.003 Sum_probs=84.1
Q ss_pred HHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 047146 435 ACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVEL 512 (608)
Q Consensus 435 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 512 (608)
.+...|+++.|.+.|..+ .+|+..+|..+..+|...|++++|++.|++. .+.| +...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 345566666666666543 2345556666677777777777777777666 3344 56677777777778888888
Q ss_pred HHHHHHHHHhcCCCCC----------------chHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 513 AEIVMENLVRFEPEGD----------------GAYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 513 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
|...++++++..+.+. .++..++.+|.+.|++++|.+.+++..+...
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8877777776544432 3567889999999999999999998876544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=3.5e-07 Score=79.34 Aligned_cols=95 Identities=9% Similarity=-0.060 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHH
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYG 466 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 466 (608)
|+...+......|.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..|+.+.+ +.| +...|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHH
Confidence 45566667788899999999999999998884 45 556888888899999999999999999865 566 477888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 047146 467 CMVDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~ 488 (608)
.+..+|.+.|++++|+..|+++
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999998876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1e-06 Score=72.99 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHH
Q 047146 393 SYTAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVD 470 (608)
Q Consensus 393 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 470 (608)
.+......|.+.|++++|+..|++..+. .| +...|..+..++...|++++|.+.|+.+.+ +.| +...|..++.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~---~~p~~~~a~~~~g~ 86 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAA 86 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHH---HcccchHHHHHHHH
Confidence 3455566788999999999999999884 55 455888888889999999999999999987 244 5678888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 047146 471 LFGRAGLIREALDLIKSM-PLVPD-AFVWGAL 500 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 500 (608)
+|...|++++|.+.+++. ...|+ ...+..+
T Consensus 87 ~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l 118 (159)
T d1a17a_ 87 SNMALGKFRAALRDYETVVKVKPHDKDAKMKY 118 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999999988887 44553 4444333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=1.3e-06 Score=80.55 Aligned_cols=190 Identities=10% Similarity=-0.030 Sum_probs=127.8
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHH
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKC-----RD----VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGI---EPD--EVTFV 430 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~ 430 (608)
....+|...|++++|.+.|.+..+ .+ ..+|..+...|.+.|++++|++.+++..+.-. .+. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345678888888888888876542 22 25788888899999999999999987654211 111 23566
Q ss_pred HHHHHHh-ccccHHHHHHHHHHhHhhc---CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------CH-HH
Q 047146 431 GVLSACS-HAGLVEEGCKHFLDMSRVY---NLQP-QTEHYGCMVDLFGRAGLIREALDLIKSM-PLVP-------DA-FV 496 (608)
Q Consensus 431 ~ll~~~~-~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~-~~ 496 (608)
.+...|. ..|++++|.+.+.++.+.. +..+ ...++..+...|.+.|++++|++.++++ ...| .. ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666664 4699999999998886521 1112 1356788899999999999999999886 1111 11 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHh--CCChHHHHHHHHHH
Q 047146 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDG-----AYILMTNIYSS--KNRWKEALKLRKKM 554 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m 554 (608)
+...+..+...|+++.|...++++.+..|..+. ....++.++.. .+.+++|+..|+++
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344455677889999999999999999876543 23455666655 34578888877543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.7e-06 Score=72.37 Aligned_cols=110 Identities=7% Similarity=-0.062 Sum_probs=60.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047146 428 TFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIH 507 (608)
Q Consensus 428 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 507 (608)
.+......+.+.|++++|+..|.+..+.....+....- .......+ -..+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~-----------~~~~~~~~--------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE-----------EAQKAQAL--------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH-----------HHHHHHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH-----------HHhhhchh--------HHHHHHHHHHHHHhh
Confidence 44455567777888888888888777632222110000 00000000 012344455556666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
|++++|...++++++++|.++.+|..++.+|...|++++|+..|++..+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=3.7e-06 Score=70.21 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 471 (608)
..+......+.+.|++++|+..|.+.... .|....+ .. ... .....+. ..+|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~---------~~--~~~-~~~~~~~--------~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------SN--EEA-QKAQALR--------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------CS--HHH-HHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc---------ch--HHH-hhhchhH--------HHHHHHHHHH
Confidence 34556677899999999999999998863 2211000 00 000 1111111 1356778889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHH
Q 047146 472 FGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEA 547 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 547 (608)
|.+.|++++|+..++.. .+.| ++..|..+..++...|++++|...++++++++|+++.+...+..+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 5556 7888999999999999999999999999999999999999998888776665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.32 E-value=5.2e-06 Score=67.92 Aligned_cols=83 Identities=12% Similarity=-0.011 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEE
Q 047146 495 FVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYGEF 574 (608)
Q Consensus 495 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 574 (608)
.+|..+..+|.+.|++++|...++++++.+|.+..+|..++.+|...|++++|+..|++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~------------------ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS------------------ 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 46667788899999999999999999999999999999999999999999999999999874
Q ss_pred EEEEeCCCCCCChhHHHHHHHHHHHHHhh
Q 047146 575 YEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603 (608)
Q Consensus 575 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 603 (608)
..|++.++...+..+..++++
T Consensus 130 --------l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 130 --------LNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp --------HSTTCHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHH
Confidence 248888888888888887765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=8.9e-07 Score=69.10 Aligned_cols=105 Identities=15% Similarity=-0.032 Sum_probs=76.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI---REALDLIKSM-PLVPDA---FVWGALLG 502 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~l~~ 502 (608)
..+++.+...+++++|++.|++.... -+.+..++..+..++.+.++. ++|+++++++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677888888899999999888772 233567777888888775544 4688888876 444433 26667778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 503 ACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 503 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
+|.+.|++++|++.++++++++|++..+...+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 8888888888888888888888888755544433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=3.7e-06 Score=65.46 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---ccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHA---GLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVD 470 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 470 (608)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+. +++++|+.+++++... ...|+ ...+..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHH
Confidence 345666777777777777777777742 33445666666666653 4455677777776541 21222 235666777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCHH
Q 047146 471 LFGRAGLIREALDLIKSM-PLVPDAF 495 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p~~~ 495 (608)
+|.+.|++++|++.|+++ .+.|+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 777777777777777776 5556433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=6.5e-06 Score=75.70 Aligned_cols=174 Identities=9% Similarity=0.023 Sum_probs=130.5
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHH
Q 047146 375 RIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQV----GIEPD-EVTFVGVLSACSHAGLVEEGCKHF 449 (608)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 449 (608)
++++|.++|. .....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|.+.+
T Consensus 32 ~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4677776654 4567899999999999999988652 22222 248888999999999999999999
Q ss_pred HHhHhhcCCCCC----hhHHHHHHHHHHh-cCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 047146 450 LDMSRVYNLQPQ----TEHYGCMVDLFGR-AGLIREALDLIKSM-------PLVP-DAFVWGALLGACKIHAKVELAEIV 516 (608)
Q Consensus 450 ~~~~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 516 (608)
+...+...-..+ ...+..+...|.. .|++++|++.+++. +..+ -..++..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987662211112 4556667777754 69999999999876 1111 134677788999999999999999
Q ss_pred HHHHHhcCCCCCc-------hHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 047146 517 MENLVRFEPEGDG-------AYILMTNIYSSKNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 517 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 559 (608)
++++....|.+.. .+...+..+...|+++.|...+++..+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999998777652 356677788899999999999999876543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=5.4e-06 Score=69.22 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECC
Q 047146 493 DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLVEVYG 572 (608)
Q Consensus 493 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 572 (608)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|.+.|++++|++.|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------------- 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------- 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 34466677788888999999999999999999999999999999999999999999999988752
Q ss_pred EEEEEEeCCCCCCChhHHHHHHHHHHHHHhh
Q 047146 573 EFYEFRKGDKSHPKTLEIYKLLDEIMHQSKN 603 (608)
Q Consensus 573 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 603 (608)
.|.+.+++..|..+..++++
T Consensus 141 -----------~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 141 -----------APEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHH
Confidence 36677787777777666553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.18 E-value=1.7e-05 Score=65.94 Aligned_cols=111 Identities=8% Similarity=-0.030 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047146 427 VTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKI 506 (608)
Q Consensus 427 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 506 (608)
..+......+.+.|++++|...|..........+.... +.. ...+.+ ...+|..+..++.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~~-~~~~~~----~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KES-KASESF----LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HHH-HHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hhh-hhcchh----HHHHHHhHHHHHHH
Confidence 34555566677777777777777766552222111100 000 000000 11234445556666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 507 HAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 507 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
.|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777776653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.15 E-value=2e-05 Score=65.46 Aligned_cols=143 Identities=10% Similarity=-0.056 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 391 VYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 391 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
...+......+.+.|++++|+..|++.... .|. . .....+.. .....+ ...+|+.+..
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~----------~-~~~~~~~~-~~~~~~--------~~~~~~Nla~ 72 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM----------E-YGLSEKES-KASESF--------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT----------C-CSCCHHHH-HHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------h-hccchhhh-hhcchh--------HHHHHHhHHH
Confidence 345666778899999999999999887642 110 0 00000110 111111 1235667888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHH-H
Q 047146 471 LFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE-A 547 (608)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A 547 (608)
+|.+.|++++|+..++.. .+.| +...|..+..++...|++++|...++++++++|+++.+...+..+..+.+...+ .
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 899999999999999987 4445 778899999999999999999999999999999999998888888877765543 4
Q ss_pred HHHHHHHH
Q 047146 548 LKLRKKMK 555 (608)
Q Consensus 548 ~~~~~~m~ 555 (608)
.+++.+|-
T Consensus 153 kk~~~~~f 160 (168)
T d1kt1a1 153 RRTYANMF 160 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.10 E-value=0.00052 Score=61.46 Aligned_cols=226 Identities=10% Similarity=-0.040 Sum_probs=130.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchhHHH
Q 047146 289 NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCAN----IGWLELGKWVHTYLDKNHINTDGFIGN 364 (608)
Q Consensus 289 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (608)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34556666667777788888888888877765 33333333333332 223444444444333332
Q ss_pred HHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH----H
Q 047146 365 ALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAI----HGKAWKALDIFSEMSQVGIEPDEVTFVGVLSA----C 436 (608)
Q Consensus 365 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~----~ 436 (608)
+...+..+...+.. ..+.+.|...+++..+.|.... ...+... .
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCC
Confidence 22223333222222 3455667777776666542211 1111111 1
Q ss_pred hccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 047146 437 SHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIREALDLIKSMPLVPDAFVWGALLGACKI----HA 508 (608)
Q Consensus 437 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 508 (608)
........+...+..... ..+...+..|...|.. ..+...+...++...-..+......+...+.. .+
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 223445666666665544 2445566666666664 34566666666665223355555555555554 57
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCChHHHHHHHHHHHhCCCc
Q 047146 509 KVELAEIVMENLVRFEPEGDGAYILMTNIYSS----KNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 509 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 560 (608)
+++.|...++++.+.+ ++..+..|+.+|.+ ..+.++|.+.|++..+.|..
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8999999999998875 45688889999886 44789999999999877753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6.4e-06 Score=64.99 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 047146 465 YGCMVDLFGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDG-------AYILMT 535 (608)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 535 (608)
+..+...|.+.|++++|++.|++. .+.| +...|..+..+|...|++++|.+.++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677888889999999988887 4445 6788888999999999999999999999999888765 556677
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 047146 536 NIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 536 ~~~~~~g~~~~A~~~~~~m~~ 556 (608)
..+...+++++|++.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 788888999999999988753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=5.8e-05 Score=62.66 Aligned_cols=130 Identities=10% Similarity=-0.003 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFG 473 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 473 (608)
......+...|++++|+..|++..+. ............. ..+.| ....|..+..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG----------AKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH----------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH----------HHhChhhHHHHHHHHHHHH
Confidence 34455667778888888888776541 0000000011110 01122 3556778889999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHH
Q 047146 474 RAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKE 546 (608)
Q Consensus 474 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 546 (608)
+.|++++|+..++++ .+.| +...|..+..++...|++++|...++++++++|+++.++..+..++.+.....+
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 6666 677999999999999999999999999999999999888888877765544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.05 E-value=1.6e-05 Score=64.86 Aligned_cols=127 Identities=7% Similarity=-0.120 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 047146 392 YSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDL 471 (608)
Q Consensus 392 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 471 (608)
..+......+.+.|++.+|+..|++.... .|... ...-.... .... .....+|+.+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~---~~~~-----~~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILL---DKKK-----NIEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHH---HHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHH---Hhhh-----hHHHHHHhhHHHH
Confidence 34555666777888888888888877652 11100 00000000 0000 0112467778899
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 047146 472 FGRAGLIREALDLIKSM-PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYS 539 (608)
Q Consensus 472 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 539 (608)
|.+.|++++|++.++.+ .+.| +..+|..+..++...|++++|...++++++++|+++.+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999987 5556 77899999999999999999999999999999999887777665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2.3e-06 Score=85.34 Aligned_cols=147 Identities=10% Similarity=0.025 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 047146 407 AWKALDIFSEMSQVGIEPDEVTFVGVLSA--CSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRAGLIREALD 483 (608)
Q Consensus 407 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 483 (608)
+..+.+.++...+....++..-....+.. ....+.++.++..+... .++.| +...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~---~~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTV---FNVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 44566666666654434443322222222 22334555555444433 33444 45567777778888888888877
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 047146 484 LIKSMPLVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKER 557 (608)
Q Consensus 484 ~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 557 (608)
.++.. +.++ ..++..+...+...|++++|...++++.++.|++..+|+.|+.+|...|+..+|...+.+....
T Consensus 142 ~~~~a-l~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 142 PQSSS-CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp -CCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHH-hCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 65544 1111 2456667788888889999999999999999999889999999999999999998888888753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=0.004 Score=56.91 Aligned_cols=238 Identities=13% Similarity=0.092 Sum_probs=125.4
Q ss_pred CCceeHHHHHHHHhccCCcHHHHHHHHHHHHhCcCCcHhHHHHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHH
Q 047146 115 PNTYTLPYVLKACWQSQSLRVGQQVHAYSMKTALLSNVYVFNTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLI 194 (608)
Q Consensus 115 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 194 (608)
||..-...+..-|-+.|.++.|..++..+ .-|..++..|.+.++++.|.+++.. . .+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k----~--~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK----A--NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHH----H--TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHH----c--CCHHHHHHHH
Confidence 55555666666777777777777777532 2356667777777888877777765 1 2455777777
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCC
Q 047146 195 QAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGN 274 (608)
Q Consensus 195 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 274 (608)
..+.+.....-+ .+.......+......++..|-..|.++....+++...... .++...++-++..|++.+.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~---~~~~~~~~~L~~lyak~~~ 148 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKP 148 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCH
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC---ccchHHHHHHHHHHHHhCh
Confidence 777776554332 22223334455556677777777788887777777665431 2266677778777777643
Q ss_pred hHHHHHHHccCCC-C----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHH
Q 047146 275 IPSARKVFDEMPV-K----------NVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLEL 343 (608)
Q Consensus 275 ~~~A~~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 343 (608)
++..+.+..... - ....|..++..|.+.|+++.|..+. .+. .++.......+..+.+..+.+.
T Consensus 149 -~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~ 222 (336)
T d1b89a_ 149 -QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVEL 222 (336)
T ss_dssp -HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHH
T ss_pred -HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHH
Confidence 333333333211 0 1122444555555555555555443 221 3344444555666667777766
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhh
Q 047146 344 GKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRS 385 (608)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 385 (608)
.-++.....+.. +...+.|+......-+..+..+.+++
T Consensus 223 ~~~~i~~yL~~~----p~~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 223 YYRAIQFYLEFK----PLLLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp HHHHHHHHHHHC----GGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----HHHHHHHHHHhccCCCHHHHHHHHHh
Confidence 666665554431 23334555555555555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.01 Score=54.18 Aligned_cols=135 Identities=12% Similarity=0.063 Sum_probs=60.6
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHH
Q 047146 185 RDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNA 264 (608)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~ 264 (608)
||..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+..... . +..+|..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~-----~---~~~~~k~ 74 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA-----N---STRTWKE 74 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH-----T---CHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc-----C---CHHHHHH
Confidence 3333334455556666667777666665422 444555666666666655544322 1 4556666
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 047146 265 LIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANI 338 (608)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 338 (608)
+...+.+.....-|.- .......+......++..|-..|.+++.+.+++..... -.++...++-++..+++.
T Consensus 75 ~~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 75 VCFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 6666666555443322 11111223333445566666666666666666655432 133444455555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.83 E-value=0.0091 Score=52.87 Aligned_cols=156 Identities=13% Similarity=-0.024 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHccCC-CCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChHHHHHHH
Q 047146 258 DVFIHNALIDMYLKCGNIPSARKVFDEMP-VKNVVSWNSMIAGLTH----RGQFKEALDIFRRMQGLGLKPDDFTLVCVL 332 (608)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 332 (608)
|+..+..|...+.+.+++++|++.|++.. ..+..++..|...|.. ..+...|...+......+ .| .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~--~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YS--NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-cc--chhhccc
Confidence 35567777888889999999999999876 3466677677777766 567888999988887765 22 2222232
Q ss_pred HHHh----ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhH----hcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHH
Q 047146 333 NSCA----NIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYA----KCGRIDQAFGVFRSMK-CRDVYSYTAMIVGLAI 403 (608)
Q Consensus 333 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 403 (608)
..+. ...+.+.+...+....+.|.... ...+...+. .......+...+.... ..+...+..+...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 2222 24566777777777766653221 122222222 1233444444444332 2344455555554443
Q ss_pred ----cCChHHHHHHHHHHHH
Q 047146 404 ----HGKAWKALDIFSEMSQ 419 (608)
Q Consensus 404 ----~~~~~~A~~~~~~m~~ 419 (608)
..+...+..+++...+
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~ 174 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACD 174 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHH
T ss_pred CCCcccccccchhhhhcccc
Confidence 2333444444444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=6.3e-05 Score=62.81 Aligned_cols=121 Identities=16% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047146 430 VGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLI--REALDLIKSMPLVPDAFVWGALLGACKIH 507 (608)
Q Consensus 430 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 507 (608)
..........|++++|.+.|.....-+.-.+-.. + ..+.+ .++..+ +. -....+..+...+...
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~-~~~~w~~~~r~~l-~~----~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------L-RDFQFVEPFATAL-VE----DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G-TTSTTHHHHHHHH-HH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------C-cchHHHHHHHHHH-HH----HHHHHHHHHHHHHHHC
Confidence 3344567788899999888888876321111000 0 00111 011111 11 0234677788899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCccCCc
Q 047146 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKE-----RKVKKTPG 564 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 564 (608)
|++++|...++++++.+|.+...|..++.+|.+.|++++|++.|+++.+ -|+.|.+.
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 9999999999999999999999999999999999999999999999853 47766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.81 E-value=5.3e-05 Score=57.81 Aligned_cols=84 Identities=12% Similarity=0.020 Sum_probs=41.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhc
Q 047146 398 IVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQP-QTEHYGCMVDLFGRA 475 (608)
Q Consensus 398 i~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 475 (608)
...+.+.|++++|+..|++.... .| +..+|..+..++.+.|++++|+..|+++.+ +.| +...|..+...|...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHHC
Confidence 33444555555555555555542 33 233555555555555555555555555544 122 344445555555555
Q ss_pred CCHHHHHHHHH
Q 047146 476 GLIREALDLIK 486 (608)
Q Consensus 476 g~~~~A~~~~~ 486 (608)
|++++|++.++
T Consensus 98 g~~~~A~~~l~ 108 (112)
T d1hxia_ 98 HNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.74 E-value=2.5e-05 Score=62.93 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC-----------hHHHHHHHHHHHh
Q 047146 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR-----------WKEALKLRKKMKE 556 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 556 (608)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 456789999999999999999999999999987754 5788888888774
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=6.6e-05 Score=60.30 Aligned_cols=126 Identities=11% Similarity=0.107 Sum_probs=72.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccc----------cHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEPD-EVTFVGVLSACSHAG----------LVEEGCKHFLDMSRVYNLQP-QTEHYGCM 468 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g----------~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 468 (608)
|-+.+.+++|+..|+...+. .|+ ..++..+..++...+ .+++|+..|+++.+ +.| +...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 44556677777777777763 453 446666666665433 33455555555544 233 33444444
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHH
Q 047146 469 VDLFGRAGLIREALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEAL 548 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 548 (608)
..+|...|++ .++... ..+.+++|.+.|+++++++|++...+..|.... +|.
T Consensus 82 G~~y~~~g~~------------~~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAP 133 (145)
T ss_dssp HHHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THH
T ss_pred HHHHHHcccc------------hhhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHH
Confidence 4444433321 011111 112468899999999999999986666665553 566
Q ss_pred HHHHHHHhCCC
Q 047146 549 KLRKKMKERKV 559 (608)
Q Consensus 549 ~~~~~m~~~~~ 559 (608)
+++.+..++|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 77777666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.57 E-value=0.00021 Score=58.22 Aligned_cols=63 Identities=19% Similarity=0.040 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 047146 494 AFVWGALLGACKIHAKVELAEIVMENLVRFEPEG-----------DGAYILMTNIYSSKNRWKEALKLRKKMKE 556 (608)
Q Consensus 494 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 556 (608)
...|+.+..++...|++++|...+++++++.|.. ..++..++.+|...|++++|+..|++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888999999988888888764321 12578899999999999999999999875
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00047 Score=53.76 Aligned_cols=92 Identities=8% Similarity=0.046 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-----hhHHHHH
Q 047146 395 TAMIVGLAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-----TEHYGCM 468 (608)
Q Consensus 395 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l 468 (608)
..+...+.+.|++++|+..|.+..+. .| +...+..+..+|.+.|++++|...+..+++...-.+. ..+|..+
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34555666666777777777666663 33 3456666666666777777777666666541100111 1234445
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 047146 469 VDLFGRAGLIREALDLIKSM 488 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~ 488 (608)
...+...+++++|++.|+..
T Consensus 86 g~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 55555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00038 Score=50.89 Aligned_cols=81 Identities=20% Similarity=0.058 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 047146 496 VWGALLGACKIHAKVELAEIVMENLVRFEPEG-------DGAYILMTNIYSSKNRWKEALKLRKKMKERKVKKTPGCSLV 568 (608)
Q Consensus 496 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 568 (608)
.+-.+...+.+.|+++.|...++++++..|.+ ..++..|+.+|.+.|++++|+..++++.+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l----------- 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL----------- 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----------
Confidence 34466788899999999999999999875543 246889999999999999999999999853
Q ss_pred EECCEEEEEEeCCCCCCChhHHHHHHHHHHHHHh
Q 047146 569 EVYGEFYEFRKGDKSHPKTLEIYKLLDEIMHQSK 602 (608)
Q Consensus 569 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 602 (608)
.|++++++.-+..+...|.
T Consensus 76 ---------------~P~~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 76 ---------------DPEHQRANGNLKYFEYIMA 94 (95)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHHH
T ss_pred ---------------CcCCHHHHHHHHHHHHHhC
Confidence 4777777777766655554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=4.5e-05 Score=75.76 Aligned_cols=107 Identities=9% Similarity=-0.084 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHH
Q 047146 326 FTLVCVLNSCANIGWLELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMK--CR-DVYSYTAMIVGLA 402 (608)
Q Consensus 326 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~ 402 (608)
..+..+...+.+.|+.+.|...+....+.. ....+..+.+.+...|++++|...|++.. .| +...|+.+...+.
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344444445555555555555444433221 12334455666666666666666666544 22 3356666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047146 403 IHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSAC 436 (608)
Q Consensus 403 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 436 (608)
..|+..+|+..|.+..... .|-..++..|...+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 6666666666666665532 33444555554444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00053 Score=50.10 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 047146 466 GCMVDLFGRAGLIREALDLIKSM----P----LVPD-AFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTN 536 (608)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 536 (608)
-.+...+.+.|++++|+..|++. + ..++ ..++..+..++.+.|++++|...++++++++|+++.++..+..
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34566666667776666666654 1 1222 4578888999999999999999999999999999887777644
Q ss_pred H
Q 047146 537 I 537 (608)
Q Consensus 537 ~ 537 (608)
.
T Consensus 89 ~ 89 (95)
T d1tjca_ 89 F 89 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.28 E-value=0.00045 Score=61.45 Aligned_cols=126 Identities=11% Similarity=0.034 Sum_probs=86.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCH
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEP-DEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLI 478 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 478 (608)
..+.|++++|+..+++..+. .| |...+..+...++..|++++|.+.++...+ +.|+ ...+..+..++...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhcccc
Confidence 34568889999999988884 55 456888888889999999999998888876 3554 44555555555554544
Q ss_pred HHHHHHHHhC--CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchH
Q 047146 479 REALDLIKSM--PLVP-DAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAY 531 (608)
Q Consensus 479 ~~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 531 (608)
+++..-.... ...| +...+......+...|+.++|...++++.+..|..+..+
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 4443332222 1223 233444445667888999999999999999988876543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.21 E-value=0.0026 Score=52.63 Aligned_cols=119 Identities=14% Similarity=0.212 Sum_probs=75.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcC
Q 047146 194 IQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCG 273 (608)
Q Consensus 194 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 273 (608)
.......|++++|.+.|.+.... -+... +........+...-..+... ....+..+...+.+.|
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~~------~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVED------KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHHH------HHHHHHHHHHHHHHCC
Confidence 35667788888888888887653 11110 00111111111122222222 4456777888888888
Q ss_pred ChHHHHHHHccCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCChHHH
Q 047146 274 NIPSARKVFDEMP---VKNVVSWNSMIAGLTHRGQFKEALDIFRRMQ-----GLGLKPDDFTL 328 (608)
Q Consensus 274 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t~ 328 (608)
++++|+..+++.. +.+...|..++.+|.+.|+.++|++.|+++. +.|+.|...+-
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 8888888888775 4466788888888888888888888888863 35788876553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.12 E-value=0.0024 Score=51.59 Aligned_cols=65 Identities=14% Similarity=-0.059 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 047146 463 EHYGCMVDLFGRAGLIREALDLIKSM--------PLVPD-----AFVWGALLGACKIHAKVELAEIVMENLVRFEPEG 527 (608)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 527 (608)
..|+.+..+|.+.|++++|.+.+++. ...++ ...+..+..++...|++++|...+++++++.|..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 34555666666666666666555543 12222 1245667788999999999999999999886544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.17 Score=48.33 Aligned_cols=265 Identities=10% Similarity=-0.024 Sum_probs=124.1
Q ss_pred HHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChHHHHHHHHHHhccCCh
Q 047146 263 NALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLG-LKPDDFTLVCVLNSCANIGWL 341 (608)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~ 341 (608)
...+..+.+.++++.....+..-+ .+...-.....+....|+.++|...+..+=..| ..|+. ..
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~--c~------------ 140 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA--CD------------ 140 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH--HH------------
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH--HH------------
Confidence 334556667777777666554322 234434455666777777777777766654443 22322 22
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 047146 342 ELGKWVHTYLDKNHINTDGFIGNALVDMYAKCGRIDQAFGVFRSMKCRDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVG 421 (608)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 421 (608)
.++..+.+.|. .+...+-.-+......|+...|..+...+...........+......... .... ..
T Consensus 141 ----~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~---~~-- 207 (450)
T d1qsaa1 141 ----KLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFA---RT-- 207 (450)
T ss_dssp ----HHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHH---HH--
T ss_pred ----HHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHH---hc--
Confidence 22333333332 22222223344445556777777777666544444444444433222221 1111 11
Q ss_pred CCCCHHHHHHHHHHHhc--cccHHHHHHHHHHhHhhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 047146 422 IEPDEVTFVGVLSACSH--AGLVEEGCKHFLDMSRVYNLQPQT--EHYGCMVDLFGRAGLIREALDLIKSM-PLVPDAFV 496 (608)
Q Consensus 422 ~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 496 (608)
..++......+..+..+ ..+.+.+...+........+.++. .....+...+...+..+.|...+... ....+...
T Consensus 208 ~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 287 (450)
T d1qsaa1 208 TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL 287 (450)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH
T ss_pred CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHH
Confidence 12222222222223222 235556666666655432232221 11112222233345555565555544 22223333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHH
Q 047146 497 WGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMK 555 (608)
Q Consensus 497 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 555 (608)
..-.+......+++..+...+..+-......+....-++..+...|+.++|...+....
T Consensus 288 ~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 33334444555666666666655432222233345666667777777777777776654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.94 E-value=0.0003 Score=62.61 Aligned_cols=121 Identities=11% Similarity=0.080 Sum_probs=84.5
Q ss_pred HhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 047146 436 CSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD-AFVWGALLGACKIHAKVELA 513 (608)
Q Consensus 436 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 513 (608)
..+.|++++|+..+++.++ .-+.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999988 23447899999999999999999999999998 55674 44555454444433333322
Q ss_pred HHHHHHHHhc-CCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 047146 514 EIVMENLVRF-EPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERK 558 (608)
Q Consensus 514 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 558 (608)
..-....... .|+....+...+..+.+.|+.++|.+.+++..+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 2211111111 23333455666788899999999999999987644
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.36 E-value=0.11 Score=38.20 Aligned_cols=141 Identities=9% Similarity=0.045 Sum_probs=104.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 047146 401 LAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGRAGLIRE 480 (608)
Q Consensus 401 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (608)
+.-.|..++..+++.+... ..+..-|+.++--....-+-+-..+.++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 4566888888888888776 3355567777766666677777777777765533333 3445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 047146 481 ALDLIKSMPLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNRWKEALKLRKKMKERKVK 560 (608)
Q Consensus 481 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 560 (608)
...-+-.++ .+...+...+.....+|+-+.-..+...+.+.+..+++....++.+|.+.|...++.+++++.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555554442 355666777888899999999999999988888888889999999999999999999999999999976
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.11 Score=38.68 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=26.1
Q ss_pred HHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 047146 478 IREALDLIKSM-PLVP-DA-FVWGALLGACKIHAKVELAEIVMENLVRFEPEGD 528 (608)
Q Consensus 478 ~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 528 (608)
.++++.++++. ...| +. ..+-.|..+|.+.|++++|...++++++.+|++.
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 34555555554 2122 22 2344444555566666666666666666666654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.33 E-value=0.65 Score=34.09 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=83.0
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHH
Q 047146 198 VKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKLGDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPS 277 (608)
Q Consensus 198 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 277 (608)
.-.|..++..+++.+.... .+..-|+.++--....-+-+...++++.+-+. +++ ..|+++..
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL--------------DKCQNLKS 74 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG--------------GGCSCTHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCc--------------hhhhcHHH
Confidence 3456666666666665443 24445555555555555555444444443322 222 22344444
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 047146 278 ARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRRMQGLGLKPDDFTLVCVLNSCANIGWLELGKWVHTYLDKNHI 356 (608)
Q Consensus 278 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (608)
....+-.+-. +....+.-+....++|.-++-.++++.+.+.+ +|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 75 vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 75 VVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 4433333322 33445666777888888888888888876654 77777888888888888888888888877777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.04 E-value=0.41 Score=36.36 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 047146 508 AKVELAEIVMENLVRFEPEGDGAYILMTNIYSS----KNRWKEALKLRKKMKERKV 559 (608)
Q Consensus 508 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 559 (608)
.+.++|.+.++++.+.+ ++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 45666777777666543 33456666666665 3567777777777766654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=3.2 Score=38.92 Aligned_cols=353 Identities=12% Similarity=-0.007 Sum_probs=192.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccCCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc
Q 047146 156 NTLMRLYAVCGLIKAVHKLFHFRQHPQAQRDLVSWTTLIQAYVKMDYPTEAILSFFDMCQANLRPDGMILVIVLSACSKL 235 (608)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 235 (608)
..-+..+.+.++++.....+.. . +.+...-.....+....|+.++|...+...-..|.. ..
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~----~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p------------- 136 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPE----K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QP------------- 136 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS----C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CC-------------
T ss_pred HHHHHHHHhccCHHHHHHhccC----C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cc-------------
Confidence 4446677788888887776644 2 234444456677888889999998888777554421 11
Q ss_pred CCchHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 047146 236 GDLSLGIKIHRYITDNHFNLSPDVFIHNALIDMYLKCGNIPSARKVFDEMPVKNVVSWNSMIAGLTHRGQFKEALDIFRR 315 (608)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 315 (608)
+....++....+.+ .. +...+-.-+......|+...|..+...+...........+..... ...+.....
T Consensus 137 ---~~c~~l~~~~~~~~-~l--t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~- 206 (450)
T d1qsaa1 137 ---NACDKLFSVWRASG-KQ--DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR- 206 (450)
T ss_dssp ---THHHHHHHHHHHTT-CS--CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH-
T ss_pred ---hHHHHHHHHHHhcC-CC--CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh-
Confidence 22223344444432 22 444555556666777888888888877765444444555544332 222222211
Q ss_pred HHhCCCCCChHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCCCchhH---HHHHHHHhHhcCCHHHHHHHHhhcC--C
Q 047146 316 MQGLGLKPDDFTLVCVLNSCAN--IGWLELGKWVHTYLDKNHINTDGFI---GNALVDMYAKCGRIDQAFGVFRSMK--C 388 (608)
Q Consensus 316 m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~--~ 388 (608)
. ..++......+..+..+ ..+.+.+..++.............. ...+...+...+..+.+...+.... .
T Consensus 207 --~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 282 (450)
T d1qsaa1 207 --T--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (450)
T ss_dssp --H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred --c--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc
Confidence 1 12333333333333332 2456667666666654432222111 1122222334455666666665443 2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 047146 389 RDVYSYTAMIVGLAIHGKAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCM 468 (608)
Q Consensus 389 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 468 (608)
.+.....-.+......+++..+...++.|... ..-...-.-.+..+....|+.+.|...|..+.. .++ .|..|
T Consensus 283 ~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~L 355 (450)
T d1qsaa1 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMV 355 (450)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHH
Confidence 23333333444455667888888888877532 122234445667888888999999888888754 233 44443
Q ss_pred HHHHHhcCCHHHHHHHH-HhCCCCCC-HHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCC
Q 047146 469 VDLFGRAGLIREALDLI-KSMPLVPD-AFVW---GALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMTNIYSSKNR 543 (608)
Q Consensus 469 ~~~~~~~g~~~~A~~~~-~~~~~~p~-~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 543 (608)
... +.|..- .+- ...+..++ ...- ..-+..+...|....|...+..+.+.. ++.-...++.+..+.|.
T Consensus 356 Aa~--~Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~ 428 (450)
T d1qsaa1 356 AAQ--RIGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQW 428 (450)
T ss_dssp HHH--HTTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTC
T ss_pred HHH--HcCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCC
Confidence 322 122100 000 00011111 1111 122345678899999999888776543 34466788888899999
Q ss_pred hHHHHHHHHHHH
Q 047146 544 WKEALKLRKKMK 555 (608)
Q Consensus 544 ~~~A~~~~~~m~ 555 (608)
++.|+....+..
T Consensus 429 ~~~aI~a~~~~~ 440 (450)
T d1qsaa1 429 WDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHH
Confidence 999988776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.25 E-value=0.72 Score=34.86 Aligned_cols=112 Identities=12% Similarity=-0.001 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCHHHH
Q 047146 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVDLFGR----AGLIREA 481 (608)
Q Consensus 406 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 481 (608)
++++|+++|++..+.| .|.. ...+ +.....+.++|.+++++..+ .| +......|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g-~~~a--~~~l--~~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMFG--CLSL--VSNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTTH--HHHH--HTCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chhh--hhhh--ccccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence 5677888888877765 2222 2222 22345677888888887766 23 34455556666654 3567888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 047146 482 LDLIKSMPLVPDAFVWGALLGACKI----HAKVELAEIVMENLVRFEPE 526 (608)
Q Consensus 482 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 526 (608)
.++|++.-..-++.....|...|.. ..+.++|...++++.+.+..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 8888887212244445555555544 46788888888888776544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.27 E-value=1.3 Score=32.70 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047146 440 GLVEEGCKHFLDMSRVYNLQPQ-TEHYGCMVDLFGRAGLIREALDLIKSM-PLVPD 493 (608)
Q Consensus 440 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 493 (608)
.++++|+.+++.+.+. .+.+ ...+..|.-+|.+.|++++|.+.++.+ .+.|+
T Consensus 52 ~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 52 NDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455666666666542 1112 244455555666666666666666655 44443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.16 E-value=1.8 Score=30.00 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=43.7
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 047146 479 REALDLIKSM---PLVPDAFVWGALLGACKIHAKVELAEIVMENLVRFEPEGDGAYILMT 535 (608)
Q Consensus 479 ~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 535 (608)
-++.+-++.+ ...|++.+..+.+++|.+.+++..|.++++.+....-++...|..+.
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444444443 67899999999999999999999999999998876544455676654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.64 E-value=1.3 Score=30.70 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 047146 406 KAWKALDIFSEMSQVGIEPDEVTFVGVLSACSHAGLVEEGCKHFLDMSRVYNLQPQTEHYGCMVD 470 (608)
Q Consensus 406 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 470 (608)
+.-++.+-+..+....+.|++....+.+.||.+.+++..|.++|+.+..+.+ ++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4456677777777778899999999999999999999999999998887543 34556666554
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