Citrus Sinensis ID: 047188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHEHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mnrhhdpnpfdeeevnpfsngpaapasrsqvpsvtsepigfgqkygatvdipldnmnepkkKERELASWEADLKRREKEIKRREEAIVkagvptddrnwppffpiihhdiskeipIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIfaaiappvvfhgksLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET
Flexible Loop (DISEMBL)
mnrhhdpnpfdeEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGAtvdipldnmnepkkkerelasweadLKRREKEIKRReeaivkagvptddrnwpPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET
Low Complexity Region (SEG)
MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLkrrekeikrreeAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET
Disordered region (IsUnstruct)
**************************************************************************************IVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFR*****
Disordered Region (DISOPRED)
**RHHDPNPFDEEEVNP********************************************************************************NWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYM*FRG****
Disordered Region (DISEMBL)
MNRHHDPNPFDEEEVNPFSN*****************PIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET
Disordered Region (DISPRO)
*****DPNPFDEEEVNPFS**************************GATVDIPLDNMNEPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRG****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERExxxxxxxxxxxxxxxxxxxxxIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9C6X2	264	Secretory carrier-associa	yes	no	0.966	0.992	0.763	1e-120
Q0JAI9	273	Secretory carrier-associa	yes	no	0.977	0.970	0.682	1e-105
Q6Z8F5	281	Secretory carrier-associa	no	no	0.974	0.939	0.633	4e-99
Q9M5P2	289	Secretory carrier-associa	no	no	0.988	0.927	0.605	2e-95
Q9ZTX0	289	Secretory carrier-associa	N/A	no	1.0	0.937	0.613	2e-91
Q8H5X5	306	Secretory carrier-associa	no	no	0.985	0.872	0.561	2e-90
Q7F613	286	Secretory carrier-associa	no	no	0.996	0.944	0.619	4e-90
A2YMP7	306	Putative secretory carrie	N/A	no	0.985	0.872	0.557	5e-90
Q9SXA5	291	Secretory carrier-associa	no	no	0.992	0.924	0.581	6e-90
Q9SKT3	282	Secretory carrier-associa	no	no	0.981	0.943	0.594	2e-87

>sp|Q9C6X2|SCAM4_ARATH Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1

 Score =  432 bits (1111), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/271 (76%), Positives = 233/271 (85%), Gaps = 9/271 (3%)

Query: 1   MNRHHDPNPFDEEE--VNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNE 58
           MNRHHDPNPFDE+E  VNPFS G        +VP+  S P+ +GQ   ATVDIPLDNMN+
Sbjct: 1   MNRHHDPNPFDEDEEIVNPFSKGGG------RVPA-ASRPVEYGQSLDATVDIPLDNMND 53

Query: 59  PKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHA 118
             +K+R+LA WEA+L+++E +IKRREEAI K GV  DD+NWPPFFPIIHHDI+KEIP+HA
Sbjct: 54  SSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHA 113

Query: 119 QRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPL 178
           Q+LQYLAFASW GIVLCLVFNVIA +VCWIKGGGVKIFFLATIYAL+G P+SYVLWYRPL
Sbjct: 114 QKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPL 173

Query: 179 YRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGI 238
           YRAMRTDSALKF WFF  YLIHIGFCI AAIAPP+ FHGKSLTG+LAAIDVISDSLLAGI
Sbjct: 174 YRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAGI 233

Query: 239 FYMIGFGLFVLESLLSLWVIQKIYMFFRGTS 269
           FY IGFGLF LESLLSLWV+QKIY++FRG  
Sbjct: 234 FYFIGFGLFCLESLLSLWVLQKIYLYFRGNK 264

Probably involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0JAI9|SCAM6_ORYSJ Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/271 (68%), Positives = 215/271 (79%), Gaps = 6/271 (2%)

Query: 4   HHDPNPFDE--EEVNPFSNGPAAPA---SRSQVPSVTSEPIGFGQKYG-ATVDIPLDNMN 57
           HHDPNPFDE   + NPFSNG        SR Q     +EP GFG   G ATVD+PLD M 
Sbjct: 2   HHDPNPFDEGNADDNPFSNGGGGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMG 61

Query: 58  EPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIH 117
           + K K REL+SWE DLKRRE +IKRREEA+  AGVP +D+NWPPFFPIIHHDI+ EIP +
Sbjct: 62  DSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPAN 121

Query: 118 AQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRP 177
            Q+LQYLAFASW GIVLCL +N IAVIVCWIK G  K+FFLATIYALLG+P+SY++WYRP
Sbjct: 122 LQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRP 181

Query: 178 LYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAG 237
           LYRAMRT+SA  F WFFL YLIHIGFCI AAIAPP+VFHGKSLTGILAAID  S+ ++ G
Sbjct: 182 LYRAMRTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSLTGILAAIDTFSEHVIIG 241

Query: 238 IFYMIGFGLFVLESLLSLWVIQKIYMFFRGT 268
           IFY +GF LF LE+LLS+ V+Q++YM+FRG 
Sbjct: 242 IFYFVGFALFCLETLLSIGVLQRVYMYFRGN 272

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z8F5|SCAM5_ORYSJ Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1

 Score =  361 bits (926), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 176/278 (63%), Positives = 211/278 (75%), Gaps = 14/278 (5%)

Query: 4   HHDPNPFDE-EEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYG-------------ATV 49
           HHDPNPFDE  + NPFSNG    A R           G   ++              ATV
Sbjct: 2   HHDPNPFDEGADDNPFSNGGGGGARRGGGGGGGGGGGGGKSQFSFGFGGLGGGSKGGATV 61

Query: 50  DIPLDNMNEPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHD 109
           DIPLDNM++ K K +EL  WEADLKRRE +I+RREEA+  AGVP +++NWPPFFPIIHHD
Sbjct: 62  DIPLDNMSDSKGKGKELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHHD 121

Query: 110 ISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPM 169
           I+ EIP +AQ+LQYLAFASW GIVLCL +N IAVIVCWI+GG  K+FFLATIY +LG+P+
Sbjct: 122 IANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIRGGDSKLFFLATIYGMLGMPL 181

Query: 170 SYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDV 229
           SY++WYRPLYRAMRTDSA  F WFFL Y++HI FC+FAAIAPPV+F GKSLTGILAAID 
Sbjct: 182 SYLMWYRPLYRAMRTDSAFSFGWFFLCYMLHIAFCVFAAIAPPVIFRGKSLTGILAAIDT 241

Query: 230 ISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRG 267
            SD  + GIFY +GF LF LE+L+S+WV+QK+YM+FRG
Sbjct: 242 FSDHAIVGIFYFVGFALFCLETLVSIWVLQKVYMYFRG 279

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P2|SCAM3_ARATH Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1

 Score =  348 bits (893), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/274 (60%), Positives = 211/274 (77%), Gaps = 6/274 (2%)

Query: 1   MNRHHDPNPF-DEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLD--NM 56
           M   +DPNPF +EEEVNPF+N    P AS S++  +  EP+GF   YG TVDIPLD    
Sbjct: 1   MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGF--DYGRTVDIPLDRAGT 58

Query: 57  NEPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPI 116
            + KKKE+EL + EA+LKRRE+++KR+E+A  +AG+  + +NWPPFFP+IHHDI+ EIP+
Sbjct: 59  QDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPV 118

Query: 117 HAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYR 176
           H QRLQY+ FA++ G+VLCL +N+IAV   WIKG GV I+ LA IY + GVP  YVLWYR
Sbjct: 119 HLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYR 178

Query: 177 PLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLA 236
           PLYRA RTDSAL F WFFLFY++HI FC+FAA+APPVVF GKSL GIL AIDV+S   + 
Sbjct: 179 PLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIV 238

Query: 237 GIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSE 270
           GIFY IGF  F LES++S+WVIQ++YM+FRG+ +
Sbjct: 239 GIFYFIGFAFFCLESVVSIWVIQQVYMYFRGSGK 272

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZTX0|SCAM_PEA Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1

 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/272 (61%), Positives = 213/272 (78%), Gaps = 1/272 (0%)

Query: 1   MNRHHDPNPFDEEEVNPFSN-GPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEP 59
           M   +DPNPFDEE+VNPFSN   AA A+ S+   +  +   +   +G TVDIPLD   + 
Sbjct: 1   MAGRYDPNPFDEEQVNPFSNPRSAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDG 60

Query: 60  KKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQ 119
           KKKER+L + EA+L++RE+E++R+EEAI +AG+  +++NWPPFFPIIHHDI+ EIPIH +
Sbjct: 61  KKKERDLQAKEAELRKREQEVRRKEEAIARAGIVIEEKNWPPFFPIIHHDITNEIPIHLR 120

Query: 120 RLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLY 179
            LQY+AF S  G+VLCL +NV++V   WIKG GVKI+FLA IY + GVP +Y LWYRPLY
Sbjct: 121 TLQYVAFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLY 180

Query: 180 RAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIF 239
           RA RTDSA+KF WFF+FYL+HIGFCI AA+APP+VF GKSLTGIL+AIDV+ D  L GIF
Sbjct: 181 RAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKGKSLTGILSAIDVVGDYTLVGIF 240

Query: 240 YMIGFGLFVLESLLSLWVIQKIYMFFRGTSET 271
           Y IGFG F LE+L+S+WVIQ++YM FRG  +T
Sbjct: 241 YFIGFGFFCLETLISIWVIQQVYMHFRGGGKT 272

Probably involved in membrane trafficking.

Pisum sativum (taxid: 3888)

>sp|Q8H5X5|SCAM1_ORYSJ Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1

 Score =  332 bits (850), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/294 (56%), Positives = 207/294 (70%), Gaps = 27/294 (9%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRS--------------QVPSVTS---------E 37
           M   +D NPF+E++VNPFS      A                  VPSV+S         E
Sbjct: 1   MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPE 60

Query: 38  PIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDR 97
           P  FG    ATVDIPLD+  + K +E+EL + EA+L +REKE+KRREEA  +AG+  +++
Sbjct: 61  PAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEK 116

Query: 98  NWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFF 157
           NWPPF P+IHHDI+ EIP H QR+QY+AFAS+ G+  CL +NVIAV   W+KG GVKI+ 
Sbjct: 117 NWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWL 176

Query: 158 LATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHG 217
           LA IY + GVP +YVLWYRPLY AMRTDSALKF  FFL YL HI FC+F+A+APPVVF G
Sbjct: 177 LAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEG 236

Query: 218 KSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET 271
           KSL GIL AID+IS + L GIFY +GFGLF +ESLLS+WVIQ++YM+FRG+ + 
Sbjct: 237 KSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKA 290

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7F613|SCAM2_ORYSJ Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1

 Score =  331 bits (848), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 168/271 (61%), Positives = 209/271 (77%), Gaps = 1/271 (0%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPK 60
           M   +D NPFDE++VNPF+ G   PAS S++P +  EP GF    GATVDIPLD+  + K
Sbjct: 1   MAGRYDRNPFDEDDVNPFAGGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMK 59

Query: 61  KKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQR 120
           KKE+EL + EA+L +RE E++RREEA  +AG+  +++NWPPFFPIIHHDIS EIPIH QR
Sbjct: 60  KKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQR 119

Query: 121 LQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYR 180
           +QYLAF+S  G+  CL +N+IA    WIKG GV I+ LA IY + GVP +YVLWYRPLY 
Sbjct: 120 MQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYN 179

Query: 181 AMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
           AMRT+SALKF WFFLFYLIHI FCI++A+APP  F GKSL GIL AIDVI ++ + GIFY
Sbjct: 180 AMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDVIGNNAIVGIFY 239

Query: 241 MIGFGLFVLESLLSLWVIQKIYMFFRGTSET 271
            IGFGLF LESLLS+ VIQ++YM+FRG+ + 
Sbjct: 240 FIGFGLFCLESLLSVVVIQQVYMYFRGSGKA 270

Probably involved in membrane trafficking.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1

 Score =  330 bits (847), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 164/294 (55%), Positives = 207/294 (70%), Gaps = 27/294 (9%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRS--------------QVPSVTS---------E 37
           M   +D NPF+E++VNPFS      A                  VPS++S         E
Sbjct: 1   MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPPE 60

Query: 38  PIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDR 97
           P  FG    ATVDIPLD+  + K +E+EL + EA+L +REKE+KRREEA  +AG+  +++
Sbjct: 61  PAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEK 116

Query: 98  NWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFF 157
           NWPPF P+IHHDI+ EIP H QR+QY+AFAS+ G+  CL +NVIAV   W+KG GVKI+ 
Sbjct: 117 NWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWL 176

Query: 158 LATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHG 217
           LA IY + GVP +YVLWYRPLY AMRTDSALKF  FFL YL HI FC+F+A+APPVVF G
Sbjct: 177 LAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEG 236

Query: 218 KSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET 271
           KSL GIL AID+IS + L GIFY +GFGLF +ESLLS+WVIQ++YM+FRG+ + 
Sbjct: 237 KSLAGILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKA 290

Probably involved in membrane trafficking.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SXA5|SCAM5_ARATH Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2

 Score =  330 bits (847), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 161/277 (58%), Positives = 208/277 (75%), Gaps = 8/277 (2%)

Query: 1   MNRHHDPNPFDEE-EVNPFSNGPAAPA-SRSQVPSVTSEPIGFGQKYGATVDIPLD---- 54
           M   +D N FDE+ EVNPF+N  + PA S S++  +  EP GFG  YG TVDIPLD    
Sbjct: 1   MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFG--YGRTVDIPLDRPGS 58

Query: 55  NMNEPKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEI 114
              + KKKE+EL + EADL+RRE+++KR+++A  +AG+  + +NWP FFP+IHHDI+ EI
Sbjct: 59  GAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEI 118

Query: 115 PIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLW 174
            +  QRLQY+AFA++ G+VL L +N+IAV   WIKG GV I+ LA IY + GVP  YVLW
Sbjct: 119 LVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLW 178

Query: 175 YRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSL 234
           YRPLYRA R+DSA  F WFFLFY++HI FC+FAA+APP+VF GKSL GIL AIDV+S   
Sbjct: 179 YRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQA 238

Query: 235 LAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET 271
           L GIFY IGFGLF LES++S+WVIQ++YM+FRG+ + 
Sbjct: 239 LVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGSGKA 275

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKT3|SCAM1_ARATH Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1

 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 161/271 (59%), Positives = 212/271 (78%), Gaps = 5/271 (1%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPK 60
           M+R+   + FD+ E+NPF+N  + PA+ S++  +  EP       GAT+DIPLD+  + K
Sbjct: 1   MSRYQS-HSFDDGEINPFANPTSVPAATSKLSPLPPEPY----DRGATMDIPLDSGKDLK 55

Query: 61  KKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQR 120
            KE+EL   EA+LKRRE+EIKR+E+AI +AG+  +++NWPPFFP+IHHDIS EIPIH QR
Sbjct: 56  AKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQR 115

Query: 121 LQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYR 180
           +QY+AF S  G+V+CL++N++AV   WIKG G  I+FLA IY + GVP +YV+WYRPLYR
Sbjct: 116 IQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYR 175

Query: 181 AMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
           AMRTDSALKF WFF  YL HI FC+FAA+APP++F GKSLTGIL AIDV+S ++L GIFY
Sbjct: 176 AMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFY 235

Query: 241 MIGFGLFVLESLLSLWVIQKIYMFFRGTSET 271
            IGFG F LESL+S+WVIQ++YM+FRG+ + 
Sbjct: 236 FIGFGFFCLESLVSIWVIQQVYMYFRGSGKA 266

Probably involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
388507708	268	unknown [Lotus japonicus]	0.981	0.992	0.812	1e-130
359806482	269	uncharacterized protein LOC100806586 [Gl	0.985	0.992	0.801	1e-130
359806258	269	uncharacterized protein LOC100780723 [Gl	0.985	0.992	0.805	1e-129
255555931	272	secretory carrier membrane protein, puta	0.981	0.977	0.817	1e-127
357484795	267	Secretory carrier-associated membrane pr	0.974	0.988	0.809	1e-127
388503896	267	unknown [Medicago truncatula]	0.974	0.988	0.802	1e-125
118482846	270	unknown [Populus trichocarpa]	0.981	0.985	0.780	1e-122
224071427	270	predicted protein [Populus trichocarpa]	0.988	0.992	0.771	1e-121
449456749	269	PREDICTED: secretory carrier-associated	0.992	1.0	0.788	1e-120
218744536	271	secretory carrier-associated membrane pr	0.985	0.985	0.747	1e-120

>gi|388507708|gb|AFK41920.1| unknown [Lotus japonicus]

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/267 (81%), Positives = 246/267 (92%), Gaps = 1/267 (0%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPK 60
           MNRHHDPNPFDE+EVNPFSNG AAP S+S++P + SEP+GFGQ++ ATVDIPLD  NEPK
Sbjct: 1   MNRHHDPNPFDEDEVNPFSNG-AAPGSKSRIPPLASEPLGFGQRHDATVDIPLDTTNEPK 59

Query: 61  KKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQR 120
           KK +ELA+WEADLKRREK++KRRE+A+ +AGVP DD+NWPP FPIIHHDI+ EIP+HAQR
Sbjct: 60  KKGQELAAWEADLKRREKDLKRREDAVSRAGVPVDDKNWPPIFPIIHHDIANEIPVHAQR 119

Query: 121 LQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYR 180
           LQYLAFASW GIVLCLVFNV+AV+VCWI+GGGVKIFFLA IYALLGVP+S+VLWYRPLYR
Sbjct: 120 LQYLAFASWLGIVLCLVFNVVAVMVCWIRGGGVKIFFLAVIYALLGVPLSHVLWYRPLYR 179

Query: 181 AMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
           AMRTDSALKF WFF+FYL+HI FCIFAAIAPPVVFHGKSLTGILAA DV SD +L GIFY
Sbjct: 180 AMRTDSALKFGWFFMFYLLHIAFCIFAAIAPPVVFHGKSLTGILAATDVFSDHVLVGIFY 239

Query: 241 MIGFGLFVLESLLSLWVIQKIYMFFRG 267
           ++GFGLF LESLLSLWVIQKIY+FFRG
Sbjct: 240 LVGFGLFCLESLLSLWVIQKIYLFFRG 266

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806482|ref|NP_001241252.1| uncharacterized protein LOC100806586 [Glycine max] gi|255638153|gb|ACU19390.1| unknown [Glycine max]

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/267 (80%), Positives = 246/267 (92%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPK 60
           MNRH+DPNPF+EEEVNPFSNG AAPAS+S++P + S+P+GFGQ++ ATVDIPLD  N+ K
Sbjct: 1   MNRHNDPNPFEEEEVNPFSNGGAAPASKSRIPPLASQPLGFGQRHDATVDIPLDTTNDSK 60

Query: 61  KKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQR 120
           K+ +ELA+WEADLKR+EKEIKRREEA+ +AGVP DD+NWPP FPIIHHDI+ EIP+HAQR
Sbjct: 61  KRGQELAAWEADLKRKEKEIKRREEAVSRAGVPVDDKNWPPIFPIIHHDIANEIPVHAQR 120

Query: 121 LQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYR 180
           LQYLAFASW GIVLCLVFNV+AV VCWI+GGGVKIFFLA IY LLGVP+SYVLWYRPLYR
Sbjct: 121 LQYLAFASWLGIVLCLVFNVVAVTVCWIRGGGVKIFFLAVIYGLLGVPLSYVLWYRPLYR 180

Query: 181 AMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
           AMRTDSALKF WFF+FYL+HIGFCIFAAIAPP+VFHGKSLTGILAAIDV SD +L GIFY
Sbjct: 181 AMRTDSALKFGWFFMFYLLHIGFCIFAAIAPPIVFHGKSLTGILAAIDVFSDHVLVGIFY 240

Query: 241 MIGFGLFVLESLLSLWVIQKIYMFFRG 267
           +IGFG+F LE+LLSLWV+QKIYM+FRG
Sbjct: 241 LIGFGMFCLEALLSLWVLQKIYMYFRG 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806258|ref|NP_001241214.1| uncharacterized protein LOC100780723 [Glycine max] gi|255641378|gb|ACU20966.1| unknown [Glycine max]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/267 (80%), Positives = 243/267 (91%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPK 60
           MNRHHDPNPF+EEEVNPFSNG  APAS+S++P + SE +GFGQ++ ATVDIPLD  N+ K
Sbjct: 1   MNRHHDPNPFEEEEVNPFSNGTTAPASKSRIPPLASESLGFGQRHDATVDIPLDTTNDSK 60

Query: 61  KKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQR 120
           KK +ELA+WEADLKRREKEIKRREEA+ +AGVP DD+NWPPFFPIIHHDI+ EIP+HAQR
Sbjct: 61  KKGQELAAWEADLKRREKEIKRREEAVSRAGVPVDDKNWPPFFPIIHHDIANEIPVHAQR 120

Query: 121 LQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYR 180
           LQYLAFASW GIVLCL FNV+AV VCWI+GGGVKIFFLA IYALLGVP+SYVLWYRPLYR
Sbjct: 121 LQYLAFASWLGIVLCLGFNVVAVTVCWIRGGGVKIFFLAVIYALLGVPLSYVLWYRPLYR 180

Query: 181 AMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
           AMRTDSALKF WFF+ YL+HIGFCIFAAIAPP+VFHGKSLTGILAAIDV SD +L GIFY
Sbjct: 181 AMRTDSALKFGWFFMLYLLHIGFCIFAAIAPPIVFHGKSLTGILAAIDVFSDHVLVGIFY 240

Query: 241 MIGFGLFVLESLLSLWVIQKIYMFFRG 267
           +IGFG+F LE+LLS WV+QKIYM+FRG
Sbjct: 241 LIGFGMFCLEALLSFWVLQKIYMYFRG 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555931|ref|XP_002519001.1| secretory carrier membrane protein, putative [Ricinus communis] gi|223541988|gb|EEF43534.1| secretory carrier membrane protein, putative [Ricinus communis]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/268 (81%), Positives = 244/268 (91%), Gaps = 2/268 (0%)

Query: 1   MNR-HHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEP 59
           M+R H+DPNPFDEEEVNPFSNG  APAS++++P +  EP GFG    ATVDIPLD MN+P
Sbjct: 1   MSRFHNDPNPFDEEEVNPFSNGSTAPASKTRIPPLGPEPAGFGHN-DATVDIPLDTMNDP 59

Query: 60  KKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQ 119
           KKKE+ELASWEADLKRREKEIKRRE+A+ KAGVP DD+NWPPFFPIIHHDI+ EIPIHAQ
Sbjct: 60  KKKEKELASWEADLKRREKEIKRREDAVAKAGVPVDDKNWPPFFPIIHHDIANEIPIHAQ 119

Query: 120 RLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLY 179
           RLQYLAFASW GIVLCLVFNVIAV+V WI+GGGVKIF LA+IYAL G+PMSYVLWYRPLY
Sbjct: 120 RLQYLAFASWLGIVLCLVFNVIAVLVNWIRGGGVKIFLLASIYALSGIPMSYVLWYRPLY 179

Query: 180 RAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIF 239
           RAMRTDSALKFSWFFLFYL+HIGFCIFAAIAPP+VFHGKSLTGIL A+DVIS  LL GIF
Sbjct: 180 RAMRTDSALKFSWFFLFYLLHIGFCIFAAIAPPIVFHGKSLTGILPAVDVISHHLLVGIF 239

Query: 240 YMIGFGLFVLESLLSLWVIQKIYMFFRG 267
           Y++GFGLF LESLLSLWV+QK+YM+FRG
Sbjct: 240 YLVGFGLFCLESLLSLWVLQKVYMYFRG 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484795|ref|XP_003612685.1| Secretory carrier-associated membrane protein [Medicago truncatula] gi|355514020|gb|AES95643.1| Secretory carrier-associated membrane protein [Medicago truncatula]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/268 (80%), Positives = 244/268 (91%), Gaps = 4/268 (1%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMN-EP 59
           MNR+HDPNPF+EEEVNPFSNG     S+S+VPSV SEP+GFGQ++ ATVDIPL+  N + 
Sbjct: 1   MNRNHDPNPFEEEEVNPFSNGTG---SKSRVPSVASEPLGFGQRHDATVDIPLETSNGDS 57

Query: 60  KKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQ 119
           KKK +ELA WEADLKRREK+IKRRE+++ KAGVP DD+NWPPFFPIIHHDI+ EIP+HAQ
Sbjct: 58  KKKSQELAVWEADLKRREKDIKRREDSVAKAGVPVDDKNWPPFFPIIHHDIANEIPVHAQ 117

Query: 120 RLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLY 179
           RLQY AFASW GIVLCLVFNV+AVIVCWI+GGGVKIFFLA IYALLG+P+SYVLWYRPLY
Sbjct: 118 RLQYSAFASWLGIVLCLVFNVVAVIVCWIRGGGVKIFFLAVIYALLGIPLSYVLWYRPLY 177

Query: 180 RAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIF 239
           RAMRTDSALKFSWFF+FYL+HI FCIFAAIAPPVVFHGKSLTGILAAIDV SD +L GIF
Sbjct: 178 RAMRTDSALKFSWFFMFYLLHIAFCIFAAIAPPVVFHGKSLTGILAAIDVFSDHVLVGIF 237

Query: 240 YMIGFGLFVLESLLSLWVIQKIYMFFRG 267
           Y+IGFGLF LE+LLSLWVIQ+IYMFFRG
Sbjct: 238 YLIGFGLFCLEALLSLWVIQRIYMFFRG 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503896|gb|AFK40014.1| unknown [Medicago truncatula]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/268 (80%), Positives = 240/268 (89%), Gaps = 4/268 (1%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMN-EP 59
           MNR HDPNPF+EEEVNPFSNG     S+S+VPSV SEP+GFGQ++ ATVDIPL+  N + 
Sbjct: 1   MNRDHDPNPFEEEEVNPFSNGTG---SKSRVPSVASEPLGFGQRHDATVDIPLETSNGDS 57

Query: 60  KKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQ 119
           KKK +ELA WEADLKRREK+IKRRE+++ KAGVP DD+NWPPFFPIIHHDI+ EIP+HAQ
Sbjct: 58  KKKSQELAVWEADLKRREKDIKRREDSVAKAGVPVDDKNWPPFFPIIHHDIANEIPVHAQ 117

Query: 120 RLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLY 179
           RLQY AFASW GIVLCLVFNV+AVIVCWI+GGGVKIFFLA IYALLG+P+SYVLWYRPLY
Sbjct: 118 RLQYSAFASWLGIVLCLVFNVVAVIVCWIRGGGVKIFFLAVIYALLGIPLSYVLWYRPLY 177

Query: 180 RAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIF 239
           RAMRTDSALKFSWFF+FYL+HI FCIFAAIAPPVVFHGKSL GILAAIDV SD +L GIF
Sbjct: 178 RAMRTDSALKFSWFFMFYLLHIAFCIFAAIAPPVVFHGKSLMGILAAIDVFSDHVLVGIF 237

Query: 240 YMIGFGLFVLESLLSLWVIQKIYMFFRG 267
           Y+IGFGLF LE  LSLWVIQ+IYMFFRG
Sbjct: 238 YLIGFGLFCLEVFLSLWVIQRIYMFFRG 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482846|gb|ABK93338.1| unknown [Populus trichocarpa]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/269 (78%), Positives = 238/269 (88%), Gaps = 3/269 (1%)

Query: 1   MNR-HHDPNPFDEEE-VNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNE 58
           M+R + DPNPFDEEE VNPFS G + PA ++++P +  EP+GFG    ATVDIPLD MN+
Sbjct: 1   MSRFNSDPNPFDEEEEVNPFSKGSSVPAVKARIPPLGHEPMGFGHN-DATVDIPLDTMND 59

Query: 59  PKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHA 118
            KKKE++LASWEADLKRREKEIKRRE+A+ K G+  DD+NWPPFFPIIHHDI+ EIPIHA
Sbjct: 60  SKKKEKDLASWEADLKRREKEIKRREDAVAKTGITPDDKNWPPFFPIIHHDIANEIPIHA 119

Query: 119 QRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPL 178
           QRLQYLAFASW GIVLCLVFN+IAV VCWI+GGGVKIFFLA IY L+G P+SY+LWYRPL
Sbjct: 120 QRLQYLAFASWLGIVLCLVFNLIAVTVCWIRGGGVKIFFLAVIYVLMGCPLSYILWYRPL 179

Query: 179 YRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGI 238
           YRAMRTDSALKF WFFLFYLIHIGFCIFAAIAPP+VFHGKSLTGIL A+DVISD LL GI
Sbjct: 180 YRAMRTDSALKFGWFFLFYLIHIGFCIFAAIAPPIVFHGKSLTGILPAVDVISDHLLVGI 239

Query: 239 FYMIGFGLFVLESLLSLWVIQKIYMFFRG 267
           FY++GFGLF LESLLSLWV+QKIYM+FRG
Sbjct: 240 FYLVGFGLFCLESLLSLWVLQKIYMYFRG 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071427|ref|XP_002303454.1| predicted protein [Populus trichocarpa] gi|118486235|gb|ABK94959.1| unknown [Populus trichocarpa] gi|222840886|gb|EEE78433.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/271 (77%), Positives = 239/271 (88%), Gaps = 3/271 (1%)

Query: 1   MNRHH-DPNPFDEEE-VNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNE 58
           M+R++ DPNPFDEEE VNPFS G  APAS++++P +  E +GFG    ATVDIPLD MN+
Sbjct: 1   MSRYNSDPNPFDEEEEVNPFSKGAVAPASKARIPPLGHEAMGFGHN-DATVDIPLDTMND 59

Query: 59  PKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHA 118
            KKK ++LASWEADLKRREKEIKRRE+A+ K G+  +D+NWPPFFPIIHHDI+ EIPIHA
Sbjct: 60  SKKKGKDLASWEADLKRREKEIKRREDAVAKTGITPNDKNWPPFFPIIHHDIANEIPIHA 119

Query: 119 QRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPL 178
           QR+QYLAFASW GIVLCLVFNVIAV VCWI+GGGVKIFFLA IYAL+G P+SYVLWYRPL
Sbjct: 120 QRIQYLAFASWLGIVLCLVFNVIAVTVCWIRGGGVKIFFLAIIYALMGCPLSYVLWYRPL 179

Query: 179 YRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGI 238
           YRAMRTDSALKFSWFF+FYLIHIGFCIFAAIAPP+VFHGKSLTGIL A+DV SD +L GI
Sbjct: 180 YRAMRTDSALKFSWFFVFYLIHIGFCIFAAIAPPIVFHGKSLTGILPAVDVFSDHVLVGI 239

Query: 239 FYMIGFGLFVLESLLSLWVIQKIYMFFRGTS 269
           FY++GFGLF LESLLSLWV+QKIYM+FRG  
Sbjct: 240 FYLVGFGLFCLESLLSLWVLQKIYMYFRGNK 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456749|ref|XP_004146111.1| PREDICTED: secretory carrier-associated membrane protein 4-like [Cucumis sativus]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/269 (78%), Positives = 242/269 (89%)

Query: 1   MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPK 60
           MNRH+DPNPFDEE VNPFS G  AP S+ ++P + SE +GFGQK+ ATVDIPLD MN+PK
Sbjct: 1   MNRHNDPNPFDEEGVNPFSKGGGAPGSKFRIPQMVSETLGFGQKHDATVDIPLDTMNDPK 60

Query: 61  KKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQR 120
           KKERELA+WEA+L R+EKEIK+REEA+ KAGVP DDRNWPPFFPIIHHDI+ EIP+HAQ+
Sbjct: 61  KKERELAAWEAELSRKEKEIKKREEAVSKAGVPADDRNWPPFFPIIHHDIANEIPVHAQK 120

Query: 121 LQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYR 180
           LQYLAFASW GIVLCLVFNVIA+ VCWI+GGGVKIFFLA IYA+LG+P+SYVLWYRPLYR
Sbjct: 121 LQYLAFASWLGIVLCLVFNVIAITVCWIRGGGVKIFFLAVIYAILGIPLSYVLWYRPLYR 180

Query: 181 AMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
           AMRTDSALKF WFF+FYL+HI FCIFAAIAPPVVFHG+SLTGILAAIDV S+ +L GIFY
Sbjct: 181 AMRTDSALKFGWFFMFYLLHIAFCIFAAIAPPVVFHGQSLTGILAAIDVFSEHVLVGIFY 240

Query: 241 MIGFGLFVLESLLSLWVIQKIYMFFRGTS 269
           +IGFG F LESLLSLWV+QKIY++FRG  
Sbjct: 241 LIGFGFFCLESLLSLWVLQKIYLYFRGNK 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218744536|dbj|BAH03477.1| secretory carrier-associated membrane protein 2 [Nicotiana tabacum]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/269 (74%), Positives = 236/269 (87%), Gaps = 2/269 (0%)

Query: 1   MNRHHDPNPFDEEE--VNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNE 58
           M+R +DPNPFDEEE  VNPFSNG +APAS+S+ P + +  +GFGQK+ AT+DIPLD+ N 
Sbjct: 1   MSRGNDPNPFDEEEPEVNPFSNGGSAPASKSRFPQMIASSLGFGQKHDATIDIPLDSTNG 60

Query: 59  PKKKERELASWEADLKRREKEIKRREEAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHA 118
             KK++ELA+WEADL+RRE++IKRRE+A+  AGVPTDDRNWPPFFPIIHHDI+ EIP H+
Sbjct: 61  SNKKQKELANWEADLQRRERDIKRREDAVAGAGVPTDDRNWPPFFPIIHHDIANEIPAHS 120

Query: 119 QRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPL 178
           ++LQYLAFASW GIV CL FNV+AV +CWI+GGGVKIFFLA IYAL+G P+SYVLWYRPL
Sbjct: 121 RKLQYLAFASWLGIVFCLAFNVLAVTICWIRGGGVKIFFLAIIYALMGCPLSYVLWYRPL 180

Query: 179 YRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGI 238
           Y AMRTDSALKF WFF+FYLIHIGFCI AAIAPP+VFHGKSLTGILAAIDV SD +L GI
Sbjct: 181 YNAMRTDSALKFGWFFMFYLIHIGFCILAAIAPPIVFHGKSLTGILAAIDVFSDHVLVGI 240

Query: 239 FYMIGFGLFVLESLLSLWVIQKIYMFFRG 267
           FY+IGF  F LE+LLSLWV+QK+YMFFRG
Sbjct: 241 FYLIGFAFFCLEALLSLWVLQKVYMFFRG 269

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2195371	264	SCAMP5 "Secretory carrier memb	0.959	0.984	0.743	2.1e-107
TAIR|locus:2008465	289	SC3 "secretory carrier 3" [Ara	0.988	0.927	0.580	6.2e-85
TAIR|locus:2051409	282	SCAMP3 "Secretory carrier memb	0.977	0.939	0.562	1e-82
UNIPROTKB|Q8H5X5	306	SCAMP1 "Secretory carrier-asso	0.996	0.882	0.539	5.5e-77
TAIR|locus:2020828	283	SCAMP4 "Secretory carrier memb	0.966	0.925	0.531	7.3e-75
ZFIN|ZDB-GENE-040426-2702	326	scamp2 "secretory carrier memb	0.642	0.533	0.301	1e-23
UNIPROTKB|O77735	338	SCAMP1 "Secretory carrier-asso	0.907	0.727	0.264	8.8e-23
UNIPROTKB|J9NWM0	338	SCAMP1 "Uncharacterized protei	0.907	0.727	0.264	1.8e-22
UNIPROTKB|Q3T0D2	354	SCAMP1 "Uncharacterized protei	0.907	0.694	0.264	2.6e-22
UNIPROTKB|O15127	329	SCAMP2 "Secretory carrier-asso	0.612	0.504	0.293	2.9e-22

TAIR|locus:2195371 SCAMP5 "Secretory carrier membrane protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 200/269 (74%), Positives = 222/269 (82%)

Query:     1 MNRHHDPNPFDEEE--VNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNE 58
             MNRHHDPNPFDE+E  VNPFS G        +VP+  S P+ +GQ   ATVDIPLDNMN+
Sbjct:     1 MNRHHDPNPFDEDEEIVNPFSKGGG------RVPAA-SRPVEYGQSLDATVDIPLDNMND 53

Query:    59 PKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHA 118
               +K+R+LA WEA+L            AI K GV  DD+NWPPFFPIIHHDI+KEIP+HA
Sbjct:    54 SSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHA 113

Query:   119 QRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPL 178
             Q+LQYLAFASW GIVLCLVFNVIA +VCWIKGGGVKIFFLATIYAL+G P+SYVLWYRPL
Sbjct:   114 QKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPL 173

Query:   179 YRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGI 238
             YRAMRTDSALKF WFF  YLIHIGFCI AAIAPP+ FHGKSLTG+LAAIDVISDSLLAGI
Sbjct:   174 YRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAGI 233

Query:   239 FYMIGFGLFVLESLLSLWVIQKIYMFFRG 267
             FY IGFGLF LESLLSLWV+QKIY++FRG
Sbjct:   234 FYFIGFGLFCLESLLSLWVLQKIYLYFRG 262

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2008465 SC3 "secretory carrier 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 159/274 (58%), Positives = 199/274 (72%)

Query:     1 MNRHHDPNPF-DEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDNMN- 57
             M   +DPNPF +EEEVNPF+N    P AS S++  +  EP+GF   YG TVDIPLD    
Sbjct:     1 MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFD--YGRTVDIPLDRAGT 58

Query:    58 -EPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPI 116
              + KKKE+EL + EA+L            A  +AG+  + +NWPPFFP+IHHDI+ EIP+
Sbjct:    59 QDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPV 118

Query:   117 HAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYR 176
             H QRLQY+ FA++ G+VLCL +N+IAV   WIKG GV I+ LA IY + GVP  YVLWYR
Sbjct:   119 HLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYR 178

Query:   177 PLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLA 236
             PLYRA RTDSAL F WFFLFY++HI FC+FAA+APPVVF GKSL GIL AIDV+S   + 
Sbjct:   179 PLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIV 238

Query:   237 GIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSE 270
             GIFY IGF  F LES++S+WVIQ++YM+FRG+ +
Sbjct:   239 GIFYFIGFAFFCLESVVSIWVIQQVYMYFRGSGK 272

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2051409 SCAMP3 "Secretory carrier membrane protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 152/270 (56%), Positives = 200/270 (74%)

Query:     1 MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPK 60
             M+R+   + FD+ E+NPF+N  + PA+ S++  +  EP       GAT+DIPLD+  + K
Sbjct:     1 MSRYQS-HSFDDGEINPFANPTSVPAATSKLSPLPPEPYD----RGATMDIPLDSGKDLK 55

Query:    61 KKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQR 120
              KE+EL   EA+L            AI +AG+  +++NWPPFFP+IHHDIS EIPIH QR
Sbjct:    56 AKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQR 115

Query:   121 LQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYR 180
             +QY+AF S  G+V+CL++N++AV   WIKG G  I+FLA IY + GVP +YV+WYRPLYR
Sbjct:   116 IQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYR 175

Query:   181 AMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
             AMRTDSALKF WFF  YL HI FC+FAA+APP++F GKSLTGIL AIDV+S ++L GIFY
Sbjct:   176 AMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFY 235

Query:   241 MIGFGLFVLESLLSLWVIQKIYMFFRGTSE 270
              IGFG F LESL+S+WVIQ++YM+FRG+ +
Sbjct:   236 FIGFGFFCLESLVSIWVIQQVYMYFRGSGK 265

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|Q8H5X5 SCAMP1 "Secretory carrier-associated membrane protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 156/289 (53%), Positives = 200/289 (69%)

Query:     1 MNRHHDPNPFDEEEVNPFSN---GPAA--PA---------SRSQVPSVTSE----PIG-F 41
             M   +D NPF+E++VNPFS    G A   P+         +   VPSV+S     P+   
Sbjct:     1 MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPE 60

Query:    42 GQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPP 101
                +GATVDIPLD+  + K +E+EL + EA+L            A  +AG+  +++NWPP
Sbjct:    61 PAAFGATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPP 120

Query:   102 FFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATI 161
             F P+IHHDI+ EIP H QR+QY+AFAS+ G+  CL +NVIAV   W+KG GVKI+ LA I
Sbjct:   121 FLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAII 180

Query:   162 YALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLT 221
             Y + GVP +YVLWYRPLY AMRTDSALKF  FFL YL HI FC+F+A+APPVVF GKSL 
Sbjct:   181 YFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVFSAVAPPVVFEGKSLA 240

Query:   222 GILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSE 270
             GIL AID+IS + L GIFY +GFGLF +ESLLS+WVIQ++YM+FRG+ +
Sbjct:   241 GILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGK 289

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=ISS

GO:0006898 "receptor-mediated endocytosis" evidence=ISS

TAIR|locus:2020828 SCAMP4 "Secretory carrier membrane protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 142/267 (53%), Positives = 187/267 (70%)

Query:     5 HDPNPFDEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKE 63
             HDPNPF +EE+NPF+N  + P AS S +  +  EP       GATVDIPLD+ N+ + KE
Sbjct:     4 HDPNPFADEEINPFANHTSVPPASNSYLKPLPPEPYD----RGATVDIPLDSGNDLRAKE 59

Query:    64 RELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQY 123
              EL + E +L            AI + GV  +++NWP FFP+IHHDI  EIPIH Q++QY
Sbjct:    60 MELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQY 119

Query:   124 LAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMR 183
             +AF +  G+V CL++N++AV V WIKG G  I+ L+ IY L GVP +YVLWYRPLYRA R
Sbjct:   120 VAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATR 179

Query:   184 TDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIG 243
             TDSALKF  FF FY+ HI FC FAA+APPV+F GKSLTG L AI++++ +   GI Y IG
Sbjct:   180 TDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVGIMYFIG 239

Query:   244 FGLFVLESLLSLWVIQKIYMFFRGTSE 270
              G F +E+LL++WVIQ++Y +FRG+ +
Sbjct:   240 AGFFCIETLLNIWVIQQVYAYFRGSGK 266

GO:0005886 "plasma membrane" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-040426-2702 scamp2 "secretory carrier membrane protein 2" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 56/186 (30%), Positives = 93/186 (50%)

Query:    91 GVPTDDRN-WPPF---FPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAV 143
             G PT  +N WPP    FPI    + D S+EIP   QRL  + +  W    + L  NV+A 
Sbjct:   105 GAPTGKQNNWPPLPKRFPIQPCFYQDFSEEIPQEHQRLCKMIYYLWMWECVTLFLNVLAC 164

Query:   144 IVCWIKGGGVKIFF-LATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIG 202
             +  +       + F L+ ++ +L  P S++ W+RP+Y+A R+DS+  F +FF  +   I 
Sbjct:   165 LADFTTNSEAGVDFGLSILWFILFAPCSFICWFRPVYKAFRSDSSFNFFFFFFVFFAQIV 224

Query:   203 FCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIY 262
               +  A+  P    G S  G ++AI VI  +   G   M+    F   + LS+ +++ ++
Sbjct:   225 ISVIQAVGIPK--WGNS--GWISAISVIGSNKAVGAIMMVVAAFFTAAAALSVVLLKMVH 280

Query:   263 MFFRGT 268
               +R T
Sbjct:   281 SHYRRT 286

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|O77735 SCAMP1 "Secretory carrier-associated membrane protein 1" [Sus scrofa (taxid:9823)]

 Score = 234 (87.4 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
 Identities = 71/268 (26%), Positives = 122/268 (45%)

Query:    13 EEVNPFSNGPAAPASRSQVPSVTS-EPIGFG--QKYGATVDIPLDNMNEPKKKERELASW 69
             +E NPFS+    P    ++P+V S +P      +++ A   I      E    + EL   
Sbjct:    35 DEYNPFSDSRTPPPGNVKMPNVPSTQPAIMKPTEEHPAYTQIA----KEHALAQAELLKR 90

Query:    70 EADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF---FPI---IHHDISKEIPIHAQRLQY 123
             + +L             +          NWPP    FP+    + D S +IP+  Q+   
Sbjct:    91 QEELERKAAELDRREREMQNLSQHGRKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVK 150

Query:   124 LAFASWFGIVLCLVFNVIAVIV--CWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRA 181
             + +  W    + L  N+   +   C     GV  F L+ ++ LL  P S+V WYRPLY A
Sbjct:   151 IMYYLWMFHAVTLFLNIFGCLAWFCVDPSRGVD-FGLSILWFLLFTPCSFVCWYRPLYGA 209

Query:   182 MRTDSALKFSWFFLFYLIHIGFCIFAA-IAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
              R+DS+ +F   F+F+ ++I  C FA  +     FH     G ++++  ++ S+  GI  
Sbjct:   210 FRSDSSFRF---FVFFFVYI--CQFAVHVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMM 264

Query:   241 MIGFGLFVLESLLSLWVIQKIYMFFRGT 268
             +I   LF   +++SL + +K++  +R T
Sbjct:   265 IIIAALFTASAVISLVMFKKVHGLYRTT 292

GO:0015031 "protein transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0055038 "recycling endosome membrane" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|J9NWM0 SCAMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 231 (86.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 71/268 (26%), Positives = 122/268 (45%)

Query:    13 EEVNPFSNGPAAPASRSQVPSVTS-EPIGFG--QKYGATVDIPLDNMNEPKKKERELASW 69
             +E NPFS+    P    ++P+V S +P      +++ A   I      E    + EL   
Sbjct:    35 DEYNPFSDSRTPPPGTVKMPNVPSTQPAIMKPTEEHPAYTQIA----KEHALAQAELLKR 90

Query:    70 EADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF---FPI---IHHDISKEIPIHAQRLQY 123
             + +L             +          NWPP    FP+    + D S +IP+  Q+   
Sbjct:    91 QEELERKAAELDRREREMQNLSQHGRKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVK 150

Query:   124 LAFASWFGIVLCLVFNVIAVIV--CWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRA 181
             + +  W    + L  N+   +   C     GV  F L+ ++ LL  P S+V WYRPLY A
Sbjct:   151 IMYYLWMFHAVTLFLNIFGCLAWFCVDPTRGVD-FGLSILWFLLFTPCSFVCWYRPLYGA 209

Query:   182 MRTDSALKFSWFFLFYLIHIGFCIFAA-IAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
              R+DS+ +F   F+F+ ++I  C FA  +     FH     G ++++  ++ S+  GI  
Sbjct:   210 FRSDSSFRF---FVFFFVYI--CQFAVHVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMM 264

Query:   241 MIGFGLFVLESLLSLWVIQKIYMFFRGT 268
             +I   LF   +++SL + +K++  +R T
Sbjct:   265 IIIAALFTASAVISLVMFKKVHGLYRTT 292

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q3T0D2 SCAMP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 231 (86.4 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
 Identities = 71/268 (26%), Positives = 122/268 (45%)

Query:    13 EEVNPFSNGPAAPASRSQVPSVTS-EPIGFG--QKYGATVDIPLDNMNEPKKKERELASW 69
             +E NPFS+    P    ++P+V S +P      +++ A   I      E    + EL   
Sbjct:    35 DEYNPFSDSRTPPPGNVKMPNVPSTQPAIMKPTEEHPAYTQIA----KEHALAQAELLKR 90

Query:    70 EADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF---FPI---IHHDISKEIPIHAQRLQY 123
             + +L             +          NWPP    FP+    + D S +IP+  Q+   
Sbjct:    91 QEELERKAAELDRREREMQNLSQHGRKNNWPPLPDNFPVGPCFYQDFSVDIPVEFQKTVK 150

Query:   124 LAFASWFGIVLCLVFNVIAVIV--CWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRA 181
             + +  W    + L  N+   +   C     GV  F L+ ++ LL  P S+V WYRPLY A
Sbjct:   151 IMYYLWMFHAVTLFLNIFGCLAWFCVDPPRGVD-FGLSILWFLLFTPCSFVCWYRPLYGA 209

Query:   182 MRTDSALKFSWFFLFYLIHIGFCIFAA-IAPPVVFHGKSLTGILAAIDVISDSLLAGIFY 240
              R+DS+ +F   F+F+ ++I  C FA  +     FH     G ++++  ++ S+  GI  
Sbjct:   210 FRSDSSFRF---FVFFFVYI--CQFAVHVLQAAGFHNWGNCGWISSLTGLNKSIPVGIMM 264

Query:   241 MIGFGLFVLESLLSLWVIQKIYMFFRGT 268
             +I   LF   +++SL + +K++  +R T
Sbjct:   265 IIIAALFTASAVISLVMFKKVHGLYRTT 292

GO:0042589 "zymogen granule membrane" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|O15127 SCAMP2 "Secretory carrier-associated membrane protein 2" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 51/174 (29%), Positives = 91/174 (52%)

Query:    98 NWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVK--I 155
             +W P  P  + D S EIP   QR+  + +  W    + L  N++A +  W  G   K   
Sbjct:   125 SWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLA-WFSGNSSKGVD 183

Query:   156 FFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVF 215
             F L+ ++ L+  P +++ WYRP+Y+A R+D++  F  FF  +   IG  I   +  P   
Sbjct:   184 FGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLVGIP--- 240

Query:   216 HGKSLTGILAAIDVISD-SLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGT 268
              G   +G +AA+  + + SL   +  M+  G F L ++LS++++Q+++  +R T
Sbjct:   241 -GLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRT 293

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0055038 "recycling endosome membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0015031 "protein transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZTX0	SCAM_PEA	No assigned EC number	0.6139	1.0	0.9377	N/A	no
Q0JAI9	SCAM6_ORYSJ	No assigned EC number	0.6826	0.9778	0.9706	yes	no
Q9C6X2	SCAM4_ARATH	No assigned EC number	0.7638	0.9667	0.9924	yes	no
A2YMP7	SCAM1_ORYSI	No assigned EC number	0.5578	0.9852	0.8725	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_III1780 SubName- Full=Putative uncharacterized protein; (270 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
pfam04144	177	pfam04144, SCAMP, SCAMP family	2e-75
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	0.002

>gnl|CDD|190882 pfam04144, SCAMP, SCAMP family

 Score =  227 bits (580), Expect = 2e-75
 Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 10/178 (5%)

Query: 98  NWPPFF------PIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGG 151
           NWPP        P  +HDIS+EIP+  QRL Y  +  W G+VL L +N+IA +  +I GG
Sbjct: 4   NWPPLPSFCPVKPCFYHDISEEIPVEYQRLVYFLYYLWLGLVLTLFYNIIACLALFIGGG 63

Query: 152 GVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAP 211
           G   F L+ +Y +LG P S+V WYRP+Y+A RTDS+  F WFF  + +HI FCI  A+  
Sbjct: 64  GGTDFGLSILYFILGTPGSFVCWYRPVYKAFRTDSSFNFFWFFFIFFLHILFCIIQAVGI 123

Query: 212 PVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTS 269
           P    G  L G + AI + S ++  GIF +I   LF LE+LLS+ +++K++  +RGT 
Sbjct: 124 P----GWGLCGWITAISLFSTNVAVGIFMLIVAILFTLEALLSVILLKKVHRLYRGTG 177

In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences. Length = 177

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 53 LDNMNEPKKKERELASWEADLKRREKEIKRRE------EAIVKAGVPTDDRN 98
          L  M+  +K E EL   E +L+  E E+ RRE      + + + G+P +  +
Sbjct: 38 LAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKGLPVELLD 89

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
KOG3088	313	consensus Secretory carrier membrane protein [Intr	100.0
PF04144	177	SCAMP: SCAMP family; InterPro: IPR007273 In verteb	100.0
KOG3088	313	consensus Secretory carrier membrane protein [Intr	99.7
PF04144	177	SCAMP: SCAMP family; InterPro: IPR007273 In verteb	97.18
PRK12704	520	phosphodiesterase; Provisional	81.75
PRK00106	535	hypothetical protein; Provisional	80.93
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	80.89
KOG3966	360	consensus p53-mediated apoptosis protein EI24/PIG8	80.12
PF05915	115	DUF872: Eukaryotic protein of unknown function (DU	80.06

>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-97  Score=669.65  Aligned_cols=264  Identities=47%  Similarity=0.869  Sum_probs=252.3

Q ss_pred             CCCCCCCCCCCCC-CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCcccccCCCC----CCCchHhHHHhHHHHHHHH
Q 047188            1 MNRHHDPNPFDEE-EVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDN----MNEPKKKERELASWEADLK   74 (271)
Q Consensus         1 m~~~~d~npf~~~-~~NPF~~~~v~~-~~~s~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~l~~k~~eL~~kE~EL~   74 (271)
                      |+ |+|+|||+|+ ++|||+|+++.+ .++++++|++++|+++  +.++|+|+|+++    .+|+++||+||+|||+||+
T Consensus         1 ~s-~~d~NPFadp~~~NPF~dp~~~q~~~~~~~~p~~~~~~~~--~~~~tv~~P~~~~~~~a~~~~~kq~eL~~rqeEL~   77 (313)
T KOG3088|consen    1 MS-RYDPNPFAEPELVNPFADPAVVQPASTPPLSPLPPEPAPS--DQGPTVDIPLDSPSTQAKDLAKKQAELLKKQEELR   77 (313)
T ss_pred             CC-CCCCCCCCCcccCCCCCCccccCCccCCCCCCCCCCCCCC--CCCCccccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            66 9999999996 589999988766 6888899999999864  368999999998    7899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCC------CcccceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047188           75 RREKEIKRREEAIVKAGVPTDDRNWP------PFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWI  148 (271)
Q Consensus        75 ~RE~el~~re~~~~~~g~~~~~~NwP------pf~Pi~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i  148 (271)
                      |||+||+|||++++++|..+++||||      |++|||||||++|||+|+||+||++||+||++++||+||+++|+++||
T Consensus        78 Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~tL~~Niia~la~~i  157 (313)
T KOG3088|consen   78 RKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVLTLLWNIIACLAWWI  157 (313)
T ss_pred             HHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999      578999999999999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHhhheeecCCccccCcchhhHHHHHH
Q 047188          149 KGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAID  228 (271)
Q Consensus       149 ~g~~~~~~~laiiy~i~g~P~sf~~WyrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~p~~f~g~g~~G~i~ai~  228 (271)
                      +|+++.+|+|||||+++|+||||+|||||||||+|+|||++|+|||++|++|++|||+++||++    |+|.||||.||+
T Consensus       158 ~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~qAvgf~----g~~~~G~i~ai~  233 (313)
T KOG3088|consen  158 KGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVFQAVGFP----GWGLCGWIPAID  233 (313)
T ss_pred             cCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHccC----CcchhhhhhHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999955    999999999999


Q ss_pred             HhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 047188          229 VISDSLLAGIFYMIGFGLFVLESLLSLWVIQKIYMFFRGTSET  271 (271)
Q Consensus       229 ~~~~~~~vgI~~~i~~~~f~~~~~~~~~~l~~v~~~yR~~G~~  271 (271)
                      .++.+.+|||+|+|++++||+++++++|+++|||+||||+|++
T Consensus       234 ~~~~~i~v~i~m~i~a~~Ft~~av~~i~~i~kVh~~yRgsG~s  276 (313)
T KOG3088|consen  234 VLSGNIAVGILMLIGAGLFTLEAVLSIWVLQKVHSYYRGSGAS  276 (313)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence            9999999999999999999999999999999999999999974

>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail

Probab=100.00  E-value=2.2e-59  Score=405.80  Aligned_cols=171  Identities=46%  Similarity=0.870  Sum_probs=167.6

Q ss_pred             CCCCCCCcc------cceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhh
Q 047188           95 DDRNWPPFF------PIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVP  168 (271)
Q Consensus        95 ~~~NwPpf~------Pi~yhdI~~eIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~~~laiiy~i~g~P  168 (271)
                      |+|||||++      ||+||||++|||++.||+||++|++|+++++||+||+++|++.++.|++++++++|++|+++|+|
T Consensus         1 ~~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P   80 (177)
T PF04144_consen    1 RENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTP   80 (177)
T ss_pred             CCCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhH
Confidence            479999999      99999999999999999999999999999999999999999999988778999999999999999


Q ss_pred             hhhhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHhhheeecCCccccCcchhhHHHHHHHhhcCchhHHHHHHHHHHHH
Q 047188          169 MSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAAIAPPVVFHGKSLTGILAAIDVISDSLLAGIFYMIGFGLFV  248 (271)
Q Consensus       169 ~sf~~WyrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~p~~f~g~g~~G~i~ai~~~~~~~~vgI~~~i~~~~f~  248 (271)
                      +||++||||+|||+|+|||++|++||+++++|++||++++||+|    ++|+||||+|++++++|..+||+++|++++|+
T Consensus        81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p----~~G~~G~i~ai~~~~~~~~vgi~~~I~a~~w~  156 (177)
T PF04144_consen   81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIP----GWGSCGWITAIDVFSNNKAVGILMLIVAILWT  156 (177)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC
Q 047188          249 LESLLSLWVIQKIYMFFRGTS  269 (271)
Q Consensus       249 ~~~~~~~~~l~~v~~~yR~~G  269 (271)
                      +++++++|+++|||++||++|
T Consensus       157 ~~~~~~~~~l~kv~~~yR~~G  177 (177)
T PF04144_consen  157 LEAVLSFWLLKKVHRYYRGTG  177 (177)
T ss_pred             HHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999998

SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane

>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=7.9e-16  Score=140.63  Aligned_cols=190  Identities=15%  Similarity=0.165  Sum_probs=121.1

Q ss_pred             CCCCCCCC-CCCCCCCCC-CCCCCCCCCCCCCCCCcccccCCC---CCCCchHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047188           14 EVNPFSNG-PAAPASRSQ-VPSVTSEPIGFGQKYGATVDIPLD---NMNEPKKKERELASWEADLKRREKEIKRREEAIV   88 (271)
Q Consensus        14 ~~NPF~~~-~v~~~~~s~-~~p~~~~~~~~~~~~~~~~~~~~~---~~~~l~~k~~eL~~kE~EL~~RE~el~~re~~~~   88 (271)
                      |.|||+|+ .++|.++.. .+|...+|.+-.-...+..+-+..   .+++.....+|+.+||+||+|||+||+|||++++
T Consensus         5 d~NPFadp~~~NPF~dp~~~q~~~~~~~~p~~~~~~~~~~~~tv~~P~~~~~~~a~~~~~kq~eL~~rqeEL~Rke~ELd   84 (313)
T KOG3088|consen    5 DPNPFAEPELVNPFADPAVVQPASTPPLSPLPPEPAPSDQGPTVDIPLDSPSTQAKDLAKKQAELLKKQEELRRKEQELD   84 (313)
T ss_pred             CCCCCCCcccCCCCCCccccCCccCCCCCCCCCCCCCCCCCCccccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78999995 456654444 333332222211111222222111   1223334578999999999999999999999999


Q ss_pred             hcCCCCCC-CCCC--Cccc------ceeccccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH--
Q 047188           89 KAGVPTDD-RNWP--PFFP------IIHHDISKEIPIHAQ-RLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIF--  156 (271)
Q Consensus        89 ~~g~~~~~-~NwP--pf~P------i~yhdI~~eIP~~~q-~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~~--  156 (271)
                      |++..... .+-+  .+||      .+.+.|.+||.+|+. ++||+.|..|....     -.+.|+++.|.+.- ..|  
T Consensus        85 RREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm-----~~~~tL~~Niia~l-a~~i~  158 (313)
T KOG3088|consen   85 RRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWM-----GLVLTLLWNIIACL-AWWIK  158 (313)
T ss_pred             HHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHc
Confidence            87754433 2444  5899      799999999999995 99999999995443     33444544443221 111  


Q ss_pred             ---HHHHHHHHHhhhhhhhhhhhhhhhhhhcc-cchhHHHHHHHHHHHHHHhhheee
Q 047188          157 ---FLATIYALLGVPMSYVLWYRPLYRAMRTD-SALKFSWFFLFYLIHIGFCIFAAI  209 (271)
Q Consensus       157 ---~laiiy~i~g~P~sf~~WyrplY~A~r~d-ss~~f~~fF~~~~~~i~f~v~~aI  209 (271)
                         +--+...++..-+...|.|-.+||.+.+- ++=.-+-|+.+|++.++-+++..+
T Consensus       159 g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~  215 (313)
T KOG3088|consen  159 GGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVF  215 (313)
T ss_pred             CCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence               11133345556677789999999998875 666777777777666655554443

>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail

Probab=97.18  E-value=0.004  Score=54.17  Aligned_cols=108  Identities=12%  Similarity=0.055  Sum_probs=75.3

Q ss_pred             CCccccee------ccccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhh
Q 047188          100 PPFFPIIH------HDISKEIPIHAQ-RLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYV  172 (271)
Q Consensus       100 Ppf~Pi~y------hdI~~eIP~~~q-~~v~~~y~~wl~~~~~L~~N~i~~~~~~i~g~~~~~~~laiiy~i~g~P~sf~  172 (271)
                      +||||.++      +-+.+||.+|++ +.|++++..+....+..+.=+...+++++.--..+. +-.+...++...+...
T Consensus         2 ~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~-~~~~~lai~y~~~~~P   80 (177)
T PF04144_consen    2 ENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGS-GSDFGLAILYLLLGTP   80 (177)
T ss_pred             CCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cceehHHHHHHHHHhH
Confidence            58999999      999999999985 899999999976655432222222222222233444 4556777777788889


Q ss_pred             hhhhhhhhhhhcccchhHHHHHHHHHHHHHHhhhee
Q 047188          173 LWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIFAA  208 (271)
Q Consensus       173 ~WyrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~a  208 (271)
                      +.|.-+||...+.-...-...|..|+++..+.+...
T Consensus        81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~  116 (177)
T PF04144_consen   81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFC  116 (177)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            999999999988755555566666666666665544

SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane

>PRK12704 phosphodiesterase; Provisional

Probab=81.75  E-value=1.9  Score=43.57  Aligned_cols=18  Identities=33%  Similarity=0.614  Sum_probs=6.6

Q ss_pred             HHHhHHHHHHHHHHHHHH
Q 047188           63 ERELASWEADLKRREKEI   80 (271)
Q Consensus        63 ~~eL~~kE~EL~~RE~el   80 (271)
                      +++|++++++|++|+++|
T Consensus       109 e~eL~~re~~Le~re~eL  126 (520)
T PRK12704        109 EEELEKKEKELEQKQQEL  126 (520)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>PRK00106 hypothetical protein; Provisional

Probab=80.93  E-value=1.7  Score=44.22  Aligned_cols=19  Identities=42%  Similarity=0.532  Sum_probs=7.2

Q ss_pred             hHHHhHHHHHHHHHHHHHH
Q 047188           62 KERELASWEADLKRREKEI   80 (271)
Q Consensus        62 k~~eL~~kE~EL~~RE~el   80 (271)
                      ++++|+++|++|++|++++
T Consensus       123 rE~eLe~kekeLe~reeeL  141 (535)
T PRK00106        123 KEKTLESKEQSLTDKSKHI  141 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=80.89  E-value=2.2  Score=43.17  Aligned_cols=19  Identities=37%  Similarity=0.566  Sum_probs=7.2

Q ss_pred             hHHHhHHHHHHHHHHHHHH
Q 047188           62 KERELASWEADLKRREKEI   80 (271)
Q Consensus        62 k~~eL~~kE~EL~~RE~el   80 (271)
                      ++++|+++|++|++|++++
T Consensus       102 re~~Le~ke~~L~~re~eL  120 (514)
T TIGR03319       102 KEENLEKKEKELSNKEKNL  120 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]

Probab=80.12  E-value=6.9  Score=36.82  Aligned_cols=25  Identities=20%  Similarity=0.207  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047188          118 AQRLQYLAFASWFGIVLCLVFNVIAVI  144 (271)
Q Consensus       118 ~q~~v~~~y~~wl~~~~~L~~N~i~~~  144 (271)
                      +|...+..+..|+++  .|+||..--+
T Consensus        91 F~cc~wngg~~w~s~--llf~~v~ipi  115 (360)
T KOG3966|consen   91 FLCCLWNGGAMWISF--LLFWQVCIPI  115 (360)
T ss_pred             HHHHHHhcchHHHHH--HHHHHHHHHH
Confidence            577888899999654  6788875443

>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins

Probab=80.06  E-value=11  Score=30.79  Aligned_cols=38  Identities=24%  Similarity=0.164  Sum_probs=27.3

Q ss_pred             CCChhHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccchh
Q 047188          150 GGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALK  189 (271)
Q Consensus       150 g~~~~~~~laiiy~i~g~P~sf~~WyrplY~A~r~dss~~  189 (271)
                      ++....+.+-++=+++++|+.|.+  |-+|.|.|--+...
T Consensus        71 ~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~Gys  108 (115)
T PF05915_consen   71 GDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYKGYS  108 (115)
T ss_pred             CCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCCCCC
Confidence            444556777777788999999887  56777877655444

The function of this currently unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	90.34

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=90.34  E-value=0.39  Score=35.05  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=20.3

Q ss_pred             CchHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047188           58 EPKKKERELASWEADLKRREKEIKRREEAIV   88 (271)
Q Consensus        58 ~l~~k~~eL~~kE~EL~~RE~el~~re~~~~   88 (271)
                      .|.+|.+||.+|++.++++|.+|..++.+++
T Consensus        27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~   57 (72)
T 3nmd_A           27 ALQEKIEELRQRDALIDELELELDQKDELIQ   57 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666777777777777777766666554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00