Citrus Sinensis ID: 047278

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQLVSLKWKGI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEHHHHHHEEEEEHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHEccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
QALVPAVLMNIYVVTLNQLYdveidkvnkpdlplasgdfsrGTGIAIALISSLTsltmgvmfrspPLLLALIIWFLLGSaysiqlpflrwkghpflapfSMMILMGLVYQLLFFIHIQKYMLarpvvitkPLVFATAFMCVLSFANgllkdvpdvdgdrkfdiQTLSVIVGRERVFWLCVSMMLTAYGAAILVgasssfplskLVTVICHSILAFILWLRAKTvdlssnastlSFYMFIWKTQLVSLKWKGI
Flexible Loop (DISEMBL)
QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKdvpdvdgdrkfdiqtlsvivGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQLvslkwkgi
Low Complexity Region (SEG)
QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPlllaliiwfllGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQLVSLKWKGI
Disordered region (IsUnstruct)
**LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQLVSLKW***
Disordered Region (DISOPRED)
QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQLVSLKWKGI
Disordered Region (DISEMBL)
QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQLVSLKWKGI
Disordered Region (DISPRO)
QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQLVSLKWKGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQLVSLKWKGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	no	no	0.956	0.596	0.514	3e-67
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.956	0.613	0.518	7e-67
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.956	0.587	0.443	1e-54
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.948	0.584	0.440	3e-52
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.896	0.585	0.312	3e-20
Q0D576	379	Probable homogentisate ph	no	no	0.932	0.620	0.290	8e-20
C5A1J7	276	Digeranylgeranylglyceryl	yes	no	0.547	0.5	0.301	1e-08
Q2NGM1	272	Digeranylgeranylglyceryl	yes	no	0.591	0.547	0.257	5e-08
Q9V2P5	277	Digeranylgeranylglyceryl	yes	no	0.559	0.509	0.269	7e-08
A2SRL0	282	Digeranylgeranylglyceryl	yes	no	0.603	0.539	0.295	1e-07

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/241 (51%), Positives = 172/241 (71%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +A+V A+ MNIY+V LNQL+D+EIDKVNKP LPLASG++S  TG+A+    +  S  +G 
Sbjct: 151 EAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGW 210

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
              S PL LAL I F+LG+AYSI LPFLRWK    +A   ++ +  ++ QL FF+HIQ +
Sbjct: 211 AVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTF 270

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +  RP V T+PL+FATAFM   S    L KD+PD++GDR F I++ SV +G+++VFW+CV
Sbjct: 271 VFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICV 330

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
            ++  AY  AIL+GA+S+   SK  TV+ H+ILA ILW R++++DL+S  +  SFYMFIW
Sbjct: 331 GLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIW 390

Query: 241 K 241
           K
Sbjct: 391 K 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  253 bits (647), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 125/241 (51%), Positives = 171/241 (70%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +A+V A++MNIY+V LNQL DVEIDKVNKP LPLASG++S  TGIAI    S+ S  +G 
Sbjct: 140 EAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGW 199

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
           +  S PL  AL + F+LG+AYSI LP LRWK    +A   ++ +  ++ Q+ F++HIQ +
Sbjct: 200 IVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 259

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +  RP++ T+PL+FATAFM   S    L KD+PD++GD+ F I++ SV +G++RVFW CV
Sbjct: 260 VFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCV 319

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           +++  AY  AILVGA+S F  SK+++V+ H ILA  LW RAK+VDLSS     S YMFIW
Sbjct: 320 TLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIW 379

Query: 241 K 241
           K
Sbjct: 380 K 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  213 bits (541), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/241 (44%), Positives = 154/241 (63%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           Q +V  + ++I+ V LNQL D+EIDK+NKPDLPLASG  S    + I   S +  L    
Sbjct: 157 QVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAW 216

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
           +  S PL   + I  ++ SAY++ LP LRWK +P L   + +  + +   L FF+H+Q  
Sbjct: 217 IVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTC 276

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +  RP    +PL+F TA + + +    L KD+PD++GD KF IQ+LS+ +G +RVFW+CV
Sbjct: 277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           S++   YG  ILVGA+S    SK++TV+ H++LA +LW  AK+VDL+SN    SFYMFIW
Sbjct: 337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIW 396

Query: 241 K 241
           K
Sbjct: 397 K 397

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 156/243 (64%), Gaps = 4/243 (1%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           Q ++P + + IY+  +NQLYD+EIDK+NKP LP+ASG FS  TG+ I+  ++  +L+ G 
Sbjct: 156 QGVLPQLFIEIYLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIIS--AAFLALSFGF 213

Query: 61  MF--RSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQ 118
            +   S PL+  L++     +AYSI +P LRWK +PF+A   M+    L   + +F H+Q
Sbjct: 214 TWITGSWPLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQ 273

Query: 119 KYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWL 178
             +L RP+   + L F  AFM   S    L KD+PDV+GD++  I + +V +G++R FW+
Sbjct: 274 TVVLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWI 333

Query: 179 CVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF 238
           CVS    A+G  IL GAS S   +K+ T + +++LA ILW +AK+VDLS  AST SFYMF
Sbjct: 334 CVSFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMF 393

Query: 239 IWK 241
           IWK
Sbjct: 394 IWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 11/237 (4%)

Query: 10  NIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLL 69
           N Y+V +NQ+YD+ IDKVNKP LP+A+GD S  +   + +  ++  L + V F   P + 
Sbjct: 144 NGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLV-VGFNFGPFIT 202

Query: 70  ALI-IWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVI 128
           +L  +   LG+ YS+  P LR K  P  A   +  + G +     + H  +  L  P   
Sbjct: 203 SLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQW 259

Query: 129 TKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYG 188
           + P+ F T+F+ + +    + KD+PDV+GDRKF I TL+  +G   + +L   ++L  Y 
Sbjct: 260 SAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYV 319

Query: 189 AAILVGASSSFPLSKLVTVICHSILA----FILWLRAKTVDLSSNASTLSFYMFIWK 241
           +AI +           + +  H ILA    F  W+  K  + +  A +  +Y FIW 
Sbjct: 320 SAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKA-NYTKEAIS-GYYRFIWN 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 9/244 (3%)

Query: 2   ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM 61
            LV  +  N Y+V +NQ+YD+ IDKVNKP LP+A+GD S  T   + ++ +    ++ V 
Sbjct: 129 GLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVT 188

Query: 62  FRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYM 121
              P +     +   LG+ YS+  P  R K +P  A   +  + G +     + +  +  
Sbjct: 189 NFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAA 245

Query: 122 LARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVS 181
           L      + P+ F T F+ + +    + KD+PDV+GDRK+ I TL+  +G   + +L   
Sbjct: 246 LGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSG 305

Query: 182 MMLTAYGAAILVGASSSFPLSKLVTVICHSILA----FILWLRAKTVDLSSNASTLSFYM 237
           +++  Y AAI V         + V V  H+ LA    F  W+  +        S   +Y 
Sbjct: 306 LLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAIS--QYYR 363

Query: 238 FIWK 241
           FIW 
Sbjct: 364 FIWN 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1764 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 38/176 (21%)

Query: 15  TLNQLYDVEIDKVNKPDLPLASGDFSRGT-----------GIAIALISSLTSLTMGVMFR 63
           T+N  +D EID++N+P+ PL  G   R T           G+A+AL+ SL +        
Sbjct: 55  TINDYFDYEIDRINRPERPLPRGAMDRRTALWYSLFLFAVGLALALLISLKAFAFA---- 110

Query: 64  SPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLA 123
               LLA I  FL    Y+ +L     K  PF+   ++  L G V  L   I + K  LA
Sbjct: 111 ----LLAYITMFL----YAWKL-----KPLPFIGNIAVAALTG-VTPLYGAIAVGKIGLA 156

Query: 124 RPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLC 179
             + +   LV         + A  ++KD+ DV+GD K   +TL +I+GR +  ++ 
Sbjct: 157 GTLAVCAFLV---------NVAREIVKDIEDVEGDLKKGAKTLPIILGRRKAAYVA 203

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 18/167 (10%)

Query: 15  TLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFR-SPPLLLALII 73
           T+N  YD EID++N P+ P+ SG       +  +LI  L S+ +G +      +++ L  
Sbjct: 50  TINDYYDYEIDRINAPNRPIPSGKIELKRALYYSLILFLVSIILGFIISLENGIVVILCT 109

Query: 74  WFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLV 133
             ++  AY +       K   F+    + IL GL +       +   ++ + V +   L 
Sbjct: 110 ILMIIYAYDL-------KQRCFIGNLCVAILTGLTF-------VFGGLITKDVNLGFILG 155

Query: 134 FATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           F   F  +++ +  ++KD+ D++GD+K D  TL +I G ++   L V
Sbjct: 156 F---FAFLMTLSREIIKDIEDIEGDKKEDAHTLPIIYGTKKAVMLAV 199

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2

 Score = 57.8 bits (138), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 22/163 (13%)

Query: 15  TLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIW 74
           T+N  +DVEID+VN+P+ P+  G   R   +  AL+  +  L +        LL AL   
Sbjct: 55  TINDYFDVEIDRVNRPNRPIPRGAIPRKVALYYALLQYMLGLALARFLGVEALLFAL--- 111

Query: 75  FLLGSAYSIQLPFL-RWKGHPFLAPFSMMILMGL--VYQLLFFIHIQKYMLARPVVITKP 131
                AY++   +  + K  PF+   ++ +L     +Y  L    + +  LA  + I   
Sbjct: 112 ----GAYALTFIYAWKLKPLPFIGNVAVALLTAATPIYGAL---GVGRVGLAGYLAICAF 164

Query: 132 LVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRER 174
           LV         + +  ++KD+ D++GD K   +TL +I+G+ R
Sbjct: 165 LV---------NVSREIMKDIEDIEGDMKMGAKTLPIIIGKRR 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=Mlab_0795 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 24/176 (13%)

Query: 16  LNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALI-IW 74
           LN  +D+EIDKVN+PD P+ SG  S    +  A          G++F +         IW
Sbjct: 54  LNDYFDLEIDKVNRPDRPIPSGKVSPKGAVVWA----------GILFAAGVAAACFTNIW 103

Query: 75  FLLGSAYSIQLPFL---RWKGHPFLAPFSMMILMGLVYQL-LFFIHIQKYMLARPVVITK 130
            L  +  ++ L  +   ++KG PFL   S+  L G ++    F +  + +++  P     
Sbjct: 104 CLAIALVNVVLLIIYAAKFKGIPFLGNLSVAYLSGSIFLFGGFLVGPESFLVMLP----- 158

Query: 131 PLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTA 186
             +FA  F   L  A  LLKD  D++GDR    +TL + +G  +   L V  +L A
Sbjct: 159 --LFAITFFGTL--ARELLKDAEDIEGDRLGGARTLPMQIGVRKTSVLAVIFVLFA 210

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) (taxid: 410358)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
224143266	284	predicted protein [Populus trichocarpa]	0.956	0.848	0.639	2e-83
296082088	398	unnamed protein product [Vitis vinifera]	0.956	0.605	0.605	3e-80
359476155	397	PREDICTED: probable homogentisate phytyl	0.956	0.607	0.605	4e-80
219842170	411	homogentisate geranylgeranyl transferase	0.956	0.586	0.617	3e-77
295656253	401	homogentisate geranylgeranyl transferase	0.956	0.600	0.572	6e-75
33391138	408	homogentisic acid geranylgeranyl transfe	0.956	0.590	0.547	3e-70
302807704	302	hypothetical protein SELMODRAFT_34027 [S	0.956	0.798	0.531	3e-70
33391144	404	homogentisic acid geranylgeranyl transfe	0.956	0.596	0.535	3e-69
125598038	408	hypothetical protein OsJ_22157 [Oryza sa	0.956	0.590	0.535	3e-69
171190284	317	homogentisate geranylgeranyl transferase	0.956	0.760	0.551	6e-69

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/241 (63%), Positives = 189/241 (78%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +ALVP+VLMNIYVV LNQL+DVEIDKVNKP LPLASGDFS GTG+AI   S L S  MG+
Sbjct: 44  KALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGI 103

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
           MF+SP L  AL+I  +LGS YSI+LPFLRWK   FLA   +MI+  +V QL FF+H+QK+
Sbjct: 104 MFQSPLLFSALLISCVLGSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKF 163

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L +  V+T+ LVFATAFMC  S    L KD+PDVDGDR + IQ+ SV +G+ERVFWLCV
Sbjct: 164 VLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCV 223

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           +M+L AYGAA++VGASS+F  SK +T++ H  LAFILWLRA++VDL+S  S  SFYMFIW
Sbjct: 224 NMLLIAYGAAVVVGASSTFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIW 283

Query: 241 K 241
           K
Sbjct: 284 K 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 146/241 (60%), Positives = 185/241 (76%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +A+VP+VLMNIYVV LNQ++DVEIDKVNKP+LPLASGDFS  TG  I  IS L S+ MG+
Sbjct: 120 KAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMGI 179

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
           MF+SPPL  AL+I FLLG+AYSI++P LRWK +P LA   ++I+  +V QL FF HIQK+
Sbjct: 180 MFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKH 239

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L R +V TK +VF  AFMC  S    L KD+PDVDGDR+F IQ+ +V +G+++VFWLCV
Sbjct: 240 VLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLCV 299

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           +M+L AYGAA ++GASSS    K  TV CH  LA +LW+RA++VDLSS  +  SFYMFIW
Sbjct: 300 NMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIW 359

Query: 241 K 241
           K
Sbjct: 360 K 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 146/241 (60%), Positives = 185/241 (76%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +A+VP+VLMNIYVV LNQ++DVEIDKVNKP+LPLASGDFS  TG  I  IS L S+ MG+
Sbjct: 144 KAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLMSVGMGI 203

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
           MF+SPPL  AL+I FLLG+AYSI++P LRWK +P LA   ++I+  +V QL FF HIQK+
Sbjct: 204 MFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHIQKH 263

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L R +V TK +VF  AFMC  S    L KD+PDVDGDR+F IQ+ +V +G+++VFWLCV
Sbjct: 264 VLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFWLCV 323

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           +M+L AYGAA ++GASSS    K  TV CH  LA +LW+RA++VDLSS  +  SFYMFIW
Sbjct: 324 NMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIW 383

Query: 241 K 241
           K
Sbjct: 384 K 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/243 (61%), Positives = 186/243 (76%), Gaps = 2/243 (0%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +ALVP+VLMNIYVV LNQL+DVEIDKVNKP LPLASG FS  TGI I   S L SL MG+
Sbjct: 156 KALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPLASGKFSMATGILIVSASLLLSLYMGI 215

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
            F+SPPLL AL+I F LGS YSI+LPFLRWK H FLA   ++I+  +V QL FF+HIQK+
Sbjct: 216 TFQSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKF 275

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L + + I + L+FATAFMC  S A  L KD+PDV+GDR + IQ+ SV +G+ERV WLCV
Sbjct: 276 VLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCV 335

Query: 181 SMMLTAYGAAILVGASSSFPL--SKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF 238
           +M+L AYGAA++ GASS   L   KL+T+I HS +A+ILW++A+ VDL+S  S  SFYMF
Sbjct: 336 NMLLVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMF 395

Query: 239 IWK 241
           IWK
Sbjct: 396 IWK 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  286 bits (732), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 180/241 (74%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +AL+P++ MNIYVV LNQL+DVEIDKVNKP+LPLASG++S G G AI     L S  MG+
Sbjct: 148 KALIPSIFMNIYVVGLNQLFDVEIDKVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGI 207

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
           +F+SPP+  AL+I FL GSAYS++LP LRWK + FLA FS++++  +   L FF HIQKY
Sbjct: 208 VFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKY 267

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L RP+V  + L FAT  + + +    L KD+PDVDGDR F IQ+ SV +G++RVFWLC+
Sbjct: 268 VLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCI 327

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
            ++L AY +A+++GASSSF LSKLVTVI H  LA ILW RA +V+L  N+S  SFYM IW
Sbjct: 328 GILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILWRRANSVNLEDNSSMTSFYMSIW 387

Query: 241 K 241
           K
Sbjct: 388 K 388

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391138|gb|AAP43911.1| homogentisic acid geranylgeranyl transferase [Hordeum vulgare] gi|326497589|dbj|BAK05884.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 132/241 (54%), Positives = 173/241 (71%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +AL  A+ MNIYVV LNQLYD++IDK+NKP LPLASG+FS  TG+ + L   + S ++G+
Sbjct: 155 EALTAALCMNIYVVGLNQLYDIQIDKINKPGLPLASGEFSVATGVFLVLAFLIMSFSIGI 214

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
              S PL+ ALI+ FLLGSAYSI+ PFLRWK H  LA   ++ +  ++ QL FF H+Q++
Sbjct: 215 RSGSAPLMCALIVSFLLGSAYSIEAPFLRWKRHALLAASCILFVRAILVQLAFFAHMQQH 274

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L RP+  TK LVFAT FMC  S    L KD+PDVDGDR F IQ+LSV +G +RV+ LC+
Sbjct: 275 VLKRPLAATKSLVFATLFMCCFSAVIALFKDIPDVDGDRDFGIQSLSVRLGPQRVYQLCI 334

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           S++LTAYGAA LVGASS+    K++TV  H +LA  LW RA+  ++ + A   SFYMFIW
Sbjct: 335 SILLTAYGAATLVGASSTNLFQKIITVSGHGLLALTLWQRAQHFEVENQARVTSFYMFIW 394

Query: 241 K 241
           K
Sbjct: 395 K 395

Source: Hordeum vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302807704|ref|XP_002985546.1| hypothetical protein SELMODRAFT_34027 [Selaginella moellendorffii] gi|302810665|ref|XP_002987023.1| hypothetical protein SELMODRAFT_34021 [Selaginella moellendorffii] gi|300145188|gb|EFJ11866.1| hypothetical protein SELMODRAFT_34021 [Selaginella moellendorffii] gi|300146752|gb|EFJ13420.1| hypothetical protein SELMODRAFT_34027 [Selaginella moellendorffii]

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/241 (53%), Positives = 179/241 (74%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           QAL+PA+LMNIY+V LNQ+ D+EID+VNKP LPLASGD+S  TG+A+ + S+L+SL +G 
Sbjct: 49  QALIPALLMNIYIVGLNQISDIEIDRVNKPYLPLASGDYSLATGVALVIASALSSLGVGF 108

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
           + +S PLL AL + F+LG+AYSIQLPFLRWK     A   ++ +  +V QL FF+H+Q +
Sbjct: 109 LVKSRPLLWALSVSFVLGTAYSIQLPFLRWKRSAVAAASCILSVRAIVVQLAFFLHMQAF 168

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L RP    + L+FATAFMC  S    L KD+PDV+GD+ F IQ+ SV +G+E+VFWLC+
Sbjct: 169 VLKRPAFYPRSLLFATAFMCFFSVVIALFKDIPDVEGDQTFGIQSFSVRLGQEKVFWLCI 228

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
            ++  AY +A++ GA SS   SK+   + HS++A ILW+R+++VDLSS A+  SFYMF+W
Sbjct: 229 GLLEAAYASAVIFGAMSSCLWSKIAMTVGHSVIAAILWMRSQSVDLSSKAAISSFYMFVW 288

Query: 241 K 241
           K
Sbjct: 289 K 289

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391144|gb|AAP43913.1| homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/241 (53%), Positives = 172/241 (71%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +AL  ++ MNIYVV LNQLYD++IDKVNKP LPLASG+FS  TG  + L S + S+ +G+
Sbjct: 151 EALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLASGEFSVATGAVLVLTSLIMSIAIGI 210

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
             +S PLL AL I F LGSAYS+  P LRWK + FLA   ++ +  ++ QL FF H+Q++
Sbjct: 211 RSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQH 270

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L RP+  TK +VFAT FMC  S    L KD+PD+DGDR F +++LSV +G ERV+WLC+
Sbjct: 271 VLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCI 330

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           +++LTAYGAAIL GASS+     ++TV  H +LAF LW RA+  D+ + A   SFYMFIW
Sbjct: 331 NILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIW 390

Query: 241 K 241
           K
Sbjct: 391 K 391

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598038|gb|EAZ37818.1| hypothetical protein OsJ_22157 [Oryza sativa Japonica Group]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/241 (53%), Positives = 172/241 (71%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +AL  ++ MNIYVV LNQLYD++IDKVNKP LPLASG+FS  TG  + L S + S+ +G+
Sbjct: 155 EALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLASGEFSVATGAVLVLTSLIMSIAIGI 214

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
             +S PLL AL I F LGSAYS+  P LRWK + FLA   ++ +  ++ QL FF H+Q++
Sbjct: 215 RSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQH 274

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L RP+  TK +VFAT FMC  S    L KD+PD+DGDR F +++LSV +G ERV+WLC+
Sbjct: 275 VLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCI 334

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           +++LTAYGAAIL GASS+     ++TV  H +LAF LW RA+  D+ + A   SFYMFIW
Sbjct: 335 NILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYMFIW 394

Query: 241 K 241
           K
Sbjct: 395 K 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 133/241 (55%), Positives = 176/241 (73%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           + ++P V +NIYVV LNQLYDVEIDKVNKP+LP+ASG++S  TG AI     L S+ MG+
Sbjct: 64  KVMIPIVCVNIYVVGLNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGI 123

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
           MF+SPP+L  L++ F  G+AYSI +P  RWK + FLA   ++I+  +  QL  F HIQ+Y
Sbjct: 124 MFQSPPVLYCLLVCFFFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQY 183

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L RPV+ ++ L FA   M +      L KD+PDVDGDR F IQT++V +G++RVFWLC+
Sbjct: 184 VLGRPVLFSRSLAFAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCI 243

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           +++L AYG+A+++G+SSS  LSKLVTV  H ILA ILW RA +VDL SN S  SFYMFIW
Sbjct: 244 TILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIW 303

Query: 241 K 241
           K
Sbjct: 304 K 304

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.956	0.613	0.497	3.9e-60
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.956	0.592	0.439	9.2e-52
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.956	0.587	0.435	1.9e-51
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.920	0.590	0.308	4.8e-23
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.896	0.583	0.240	9.7e-07

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 120/241 (49%), Positives = 164/241 (68%)

Query:     1 QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
             +A+V A++MNIY+V LNQL DVEIDKVNKP LPLASG++S  TGIAI    S+ S  +G 
Sbjct:   140 EAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGW 199

Query:    61 MFRSPPXXXXXXXXXXXGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
             +  S P           G+AYSI LP LRWK    +A   ++ +  ++ Q+ F++HIQ +
Sbjct:   200 IVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 259

Query:   121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
             +  RP++ T+PL+FATAFM   S    L KD+PD++GD+ F I++ SV +G++RVFW CV
Sbjct:   260 VFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCV 319

Query:   181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
             +++  AY  AILVGA+S F  SK+++V+ H ILA  LW RAK+VDLSS     S YMFIW
Sbjct:   320 TLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIW 379

Query:   241 K 241
             K
Sbjct:   380 K 380

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 106/241 (43%), Positives = 150/241 (62%)

Query:     1 QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
             Q +V  + ++I+ V LNQL D+EIDK+NKPDLPLASG+ S    + I   S +  L    
Sbjct:   154 QVVVAVICIHIFDVGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAW 213

Query:    61 MFRSPPXXXXXXXXXXXGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
             +  S P            +AY++ LP LRWK +P L   S +  + +   L FF+H+Q  
Sbjct:   214 IVGSWPLFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTC 273

Query:   121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
             +  RP    +PL+F TA + + +    L KD+PD++GD KF IQ+LS+ +G +RVFW+CV
Sbjct:   274 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 333

Query:   181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
             S++  AYG  ILVGA+S    SK++TV+ H+ILA +LW  AK+ DL+SN    SFYMFIW
Sbjct:   334 SLLEMAYGVTILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIW 393

Query:   241 K 241
             K
Sbjct:   394 K 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 105/241 (43%), Positives = 149/241 (61%)

Query:     1 QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
             Q +V  + ++I+ V LNQL D+EIDK+NKPDLPLASG  S    + I   S +  L    
Sbjct:   157 QVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAW 216

Query:    61 MFRSPPXXXXXXXXXXXGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
             +  S P            SAY++ LP LRWK +P L   + +  + +   L FF+H+Q  
Sbjct:   217 IVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTC 276

Query:   121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
             +  RP    +PL+F TA + + +    L KD+PD++GD KF IQ+LS+ +G +RVFW+CV
Sbjct:   277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336

Query:   181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
             S++   YG  ILVGA+S    SK++TV+ H++LA +LW  AK+VDL+SN    SFYMFIW
Sbjct:   337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIW 396

Query:   241 K 241
             K
Sbjct:   397 K 397

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 75/243 (30%), Positives = 120/243 (49%)

Query:     3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSL-TMGVM 61
             L+  +  N Y+V +NQ+YD+ IDKVNKP LP+A+GD S  +   + +  ++  L  +G  
Sbjct:   144 LLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFN 203

Query:    62 FRSPPXXXXXXXXXXXGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYM 121
             F  P            G+ YS+  P LR K  P  A   +  + G +     + H  +  
Sbjct:   204 F-GPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAA 259

Query:   122 LARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVS 181
             L  P   + P+ F T+F+ + +    + KD+PDV+GDRKF I TL+  +G   + +L   
Sbjct:   260 LGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSG 319

Query:   182 MMLTAYGAAILVG--ASSSFPLSKLVT--VICHSILAFILWLRAKTVDLSSNASTLSFYM 237
             ++L  Y +AI +       F  S ++   VI  S L F  W+  K  + +  A +  +Y 
Sbjct:   320 LLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKA-NYTKEAIS-GYYR 377

Query:   238 FIW 240
             FIW
Sbjct:   378 FIW 380

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 59/245 (24%), Positives = 104/245 (42%)

Query:    12 YVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTM-GVM-FRSPPXXX 69
             Y  T+N  YD +ID +N+P  P+ SG  S    I    +  L  L + G++   +     
Sbjct:   150 YTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILDVWAGHTTP 209

Query:    70 XXXXXXXXGS--AYSIQLPFLRWKGHPFLAPFSMMILMGLVY-QLLFFIHIQKYMLARPV 126
                     GS  +Y    P L+ K + ++  F++    G  Y  L ++     +    P 
Sbjct:   210 TVFYLALGGSLLSYIYSAPPLKLKQNGWVGNFAL----GASYISLPWWAGQALFGTLTPD 265

Query:   127 VITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMM-LT 185
             V+   L+++ A + +      ++ D   V+GDR   +Q+L V  G E   W+CV  + +T
Sbjct:   266 VVVLTLLYSIAGLGI-----AIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAIDIT 320

Query:   186 AYGAA--ILVGASSSFPLSKLVTVICHSILAFILWLRAKT-VDLSSNASTLSFYMF-IWK 241
                 A  +L      + L+ +  +I   +  F  +L+     D+   AS   F +  I+ 
Sbjct:   321 QLSVAGYLLASGKPYYALALVALIIPQIVFQFKYFLKDPVKYDVKYQASAQPFLVLGIFV 380

Query:   242 TQLVS 246
             T L S
Sbjct:   381 TALAS 385


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.140   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      252       241   0.00094  113 3  11 22  0.45    32
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  171 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.65u 0.10s 18.75t   Elapsed:  00:00:01
  Total cpu time:  18.66u 0.10s 18.76t   Elapsed:  00:00:01
  Start:  Sat May 11 01:43:32 2013   End:  Sat May 11 01:43:33 2013

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWJ1	HPT1_ARATH	2, ., 5, ., 1, ., n, 8	0.5186	0.9563	0.6132	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-113
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	2e-60
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	4e-16
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	3e-14
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	3e-10
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	5e-10
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	9e-10
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	9e-10
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	4e-08
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	1e-07
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	3e-07
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	8e-07
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	2e-06
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	2e-04

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  325 bits (836), Expect = e-113
 Identities = 142/241 (58%), Positives = 180/241 (74%)

Query: 1   QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           +ALVPA+LMNIY+V LNQLYD+EIDKVNKP LPLASG+FS  TG+AI    ++ S  MG 
Sbjct: 27  EALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW 86

Query: 61  MFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKY 120
           +  S PL  AL + F+LG+AYSI LP LRWK     A   ++ +  +V QL FF+H+Q +
Sbjct: 87  IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTH 146

Query: 121 MLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCV 180
           +L RP V T+PL+FATAFMC  S    L KD+PDV+GDR F I++ SV +G++RVFWLCV
Sbjct: 147 VLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCV 206

Query: 181 SMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW 240
           +++  AY AAILVGASSSF  SK++TV+ H ILA ILW RA++VDLSS A+  SFYMFIW
Sbjct: 207 NLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIW 266

Query: 241 K 241
           K
Sbjct: 267 K 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  192 bits (490), Expect = 2e-60
 Identities = 89/240 (37%), Positives = 140/240 (58%), Gaps = 4/240 (1%)

Query: 2   ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM 61
           A +  +  N+Y+V LNQL D+EID++NKP LPLA+G+FSR  G  I +I+ + +L +   
Sbjct: 58  AWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILA-A 116

Query: 62  FRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYM 121
              P LL+ + I  L+G+AYS  LP +R K  P LA   +  + G++  L  F+H Q ++
Sbjct: 117 LLGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WL 173

Query: 122 LARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVS 181
           L   V+I   +   T F+ V +FA  + KD+PD++GDR++ I T ++ +G++ VF L   
Sbjct: 174 LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCW 233

Query: 182 MMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWK 241
           ++   Y   I VG  S   ++    ++ H IL  +LW R++ VDL    +   FY FIWK
Sbjct: 234 VLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK 293

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 75.2 bits (185), Expect = 4e-16
 Identities = 71/244 (29%), Positives = 106/244 (43%), Gaps = 18/244 (7%)

Query: 6   AVLMNIYVVTLNQLYDVEIDKV--NKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFR 63
            +L+      LN  +D EID    NKPD PL SG  S    + + L   L  L + ++  
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLLG 91

Query: 64  SPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLA 123
              LLL L+   L G  YS   P LR K  P L    + +  GL+  L  +        A
Sbjct: 92  PLLLLLGLLGLLL-GLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGAY--------A 139

Query: 124 RPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMM 183
               I  PL+     + +LS A  L  D+ DV+GDRK  I+TL V +GR+R   L     
Sbjct: 140 VGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALAL----Y 195

Query: 184 LTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQ 243
                AA+L+       L+ L+ ++   +LA  L + A+ +   +       ++FI    
Sbjct: 196 ALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIALLF 255

Query: 244 LVSL 247
            + L
Sbjct: 256 GLLL 259

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 47/248 (18%), Positives = 94/248 (37%), Gaps = 20/248 (8%)

Query: 2   ALVPAVLMNIYVVTLNQLYDVEIDKVNKP--DLPLASGDFSRGTGIAIALISSLTSLTMG 59
           A +   L       +N L D EID++N    + PL SG  S    + +A++  L  L + 
Sbjct: 52  AFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALA 111

Query: 60  VMFRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQK 119
           ++  +P   L  +   +L  AY         K   FL    + +  GL            
Sbjct: 112 LLL-NPLAFLLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGS 164

Query: 120 YMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLC 179
                   +            + +    ++  + D++GDRK  +++L V+ G ++   L 
Sbjct: 165 --------LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALA 216

Query: 180 VSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFI 239
           + ++L    +A+LV       L  L+ ++   + A +L  +   VD+    +  + +   
Sbjct: 217 LLLLLA---SALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVN 273

Query: 240 WKTQLVSL 247
               L+  
Sbjct: 274 LLLGLLLF 281

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 15/178 (8%)

Query: 15  TLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIW 74
            LN  +D E+D++N+PD P+ SG  SR   + +A++  +  L    +      L+ +++ 
Sbjct: 55  ALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 75  FLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVF 134
            +LG  Y+ +L     K +  +    +  L G+ +       I   +    +     L+ 
Sbjct: 115 -VLGILYNWKL-----KEYGLIGNLYVAFLTGMTF-------IFGGIAVGELNEAVILLA 161

Query: 135 ATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAIL 192
           A AF  +++    ++KD+ DV+GDR    +TL+++ G +    +  ++ + A   + L
Sbjct: 162 AMAF--LMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPL 217

Length = 279

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 16/195 (8%)

Query: 15  TLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIW 74
            +N  +D EID++N+PD P+ SG  S    +A +++     + +  +     L +AL   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 75  FLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYM-LARPVVITKPLV 133
            LL   Y+  L     KG P L   S+  L G  +  LF         L   +V+     
Sbjct: 116 LLL-VLYAETL-----KGTPGLGNASVAYLTGSTF--LFGGAAVGTEGLLALLVL----- 162

Query: 134 FATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILV 193
           FA A +   + A  ++KDV D++GDR    +TL +++G  +  ++  + +L A  A+ L 
Sbjct: 163 FALAALA--TLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLP 220

Query: 194 GASSSFPLSKLVTVI 208
              S+F L  LV V 
Sbjct: 221 YLLSTFGLWYLVLVA 235

Length = 276

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 57.5 bits (139), Expect = 9e-10
 Identities = 41/191 (21%), Positives = 86/191 (45%), Gaps = 28/191 (14%)

Query: 2   ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM 61
            L+   L   +  ++N  +D ++D +N+P  P+ SG  S        L+ ++  L + ++
Sbjct: 43  MLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALV 102

Query: 62  FRSPPLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYM 121
             +  ++L  ++  +L   YS  +P ++ K + +L P      +GL Y+ L +       
Sbjct: 103 LGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPP----AVGLSYEGLPW------- 149

Query: 122 LARPVVITKPLVFA--TAFMCVLSFANGL-------LKDVPDVDGDRKFDIQTLSVIVGR 172
                 +    +FA  T    V++    L       L D   V+GDR+  +++L V++G 
Sbjct: 150 ------MAGHAIFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203

Query: 173 ERVFWLCVSMM 183
           +R   + V+ +
Sbjct: 204 KRAAIVAVTTI 214

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 11/217 (5%)

Query: 6   AVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSP 65
             L+   V  +N L D+E D +NKP+  + S   + G  + + ++       +  +   P
Sbjct: 45  TFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGP 104

Query: 66  PLLLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARP 125
              L  II  +LG  YS+     R K  P      + +L  L   +L   + Q       
Sbjct: 105 KFALIFIIPLILGILYSVFF-KRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLT----- 158

Query: 126 VVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLT 185
             I   L+    F+ + SF   ++ D+ D++GDRK  ++TL +++G+ER     + + L 
Sbjct: 159 --IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLL 216

Query: 186 AYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAK 222
                IL   +   PL  LV ++   +LA++L+   K
Sbjct: 217 FLILLILGVYTGLLPLLLLVLLL---LLAYVLYYIIK 250

Length = 285

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 16/160 (10%)

Query: 15  TLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIW 74
           T+N  +D EIDK+N+P+ PL  G  SR   +  +L+     L +  +      L AL  +
Sbjct: 55  TINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAY 114

Query: 75  FLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVF 134
            L+   Y+ +L     K  PF+    + +L G    +   I + +  LA  + I   LV 
Sbjct: 115 VLM-FLYAWKL-----KPLPFIGNVVVALLTG-ATPIYGAIAVGRIGLAGYLAICAFLV- 166

Query: 135 ATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRER 174
                   + A  ++KD+ D++GD+    +TL +I+G++R
Sbjct: 167 --------NVAREIMKDIEDIEGDKAKGAKTLPIIIGKKR 198

Length = 277

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 60/240 (25%), Positives = 94/240 (39%), Gaps = 62/240 (25%)

Query: 3   LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRG-----------TGIAIALI- 50
           L+    +  Y  T+N  YD +ID +N+P  P+ SG  S              GIAIA I 
Sbjct: 60  LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119

Query: 51  --------SSLTSLTMG-----VMFRSPPLLLALIIW---FLLGSAYSIQLPFLRWKGHP 94
                    ++  L +       ++ +PPL L    W   F LG++Y I LP+  W GH 
Sbjct: 120 DLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASY-IALPW--WAGHA 176

Query: 95  FLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPD 154
                +                        P +    L+++ A + +      ++ D   
Sbjct: 177 LFGELN------------------------PDIAVLTLIYSIAGLGI-----AIVNDFKS 207

Query: 155 VDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYG--AAILVGASSSFPLSKLVTVICHSI 212
           V+GDR   +Q+L V  G E   W+CV  +    G  AA L+    +   + LV +I   I
Sbjct: 208 VEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAAALVALIIPQI 267

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 12/232 (5%)

Query: 8   LMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPL 67
           L+     TLN  +D E+D +N+P  P+ SG  S    + +  + ++  L +  +   P +
Sbjct: 76  LLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL-GPWV 134

Query: 68  LLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVV 127
            LA ++   L   YS   P LR K + +L        +GL Y+ L +            +
Sbjct: 135 FLAALLGLFLAWIYS--APPLRLKQNGWLGN----YAVGLSYEGLPWWAGAAAFG--AGL 186

Query: 128 ITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAY 187
            + P+V       + +     L D   V+GDR+  +++L V+ G +    +   ++    
Sbjct: 187 PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQ 246

Query: 188 GAAI--LVGASSSFPLSKLVTVICHSILAFILWLRA-KTVDLSSNASTLSFY 236
            A I  L+        + +  ++   I      LR     D+  NAS   FY
Sbjct: 247 LAVIALLLAWGQPLYAAIVGLLLIPQITLQDRLLRDPLERDVWYNASAQPFY 298

Length = 314

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 48/226 (21%), Positives = 83/226 (36%), Gaps = 30/226 (13%)

Query: 3   LVPAVLMNIYVVTLNQLYDVEIDKVN--KPDLPLASGDFSRGTGIAIALISSLTSLTMGV 60
           L PA   N+++  +N ++D + D++N  K           RG    +  ++   +L +  
Sbjct: 54  LFPA---NVFLYGVNDVFDADTDELNPKKDREREVR---YRGDRRVLVAVALSGALALAF 107

Query: 61  MFRSPPL-LLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQK 119
           +   PP    AL+ + +L   YS   P LR+K  P L   S          L     +  
Sbjct: 108 LLVLPPAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNG--------LYILPGVAA 157

Query: 120 YMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLC 179
           Y L    +     V       +          +PD++ DR   I+T + ++G  R +  C
Sbjct: 158 YALVSGSLPPLLAVAGGWLWAM---GMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYC 214

Query: 180 VSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVD 225
            +  L    AA    A     L  L+ V      A +L +    + 
Sbjct: 215 AACWL---LAAAAFAA-VDLRLGALLLVYP----ALVLAILRAGIA 252

Length = 282

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 60/198 (30%)

Query: 12  YVVTLNQLYDVEIDKVNKPDLPLASGDFSR-------------GTGIA------------ 46
           Y  T+N  YD EID +N+P  P+ SG  S              G G+A            
Sbjct: 138 YTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFP 197

Query: 47  IALISSLTSLTMGVMFRSPPLLLALIIW---FLLGSAYSIQLPFLRWKGHPFLAPFSMMI 103
           I    +L    +  ++ +PPL L    W   + LG++Y I LP+  W G           
Sbjct: 198 IVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASY-ISLPW--WAG----------- 243

Query: 104 LMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDI 163
                 Q LF              +T  +V  T    +      ++ D   ++GDR   +
Sbjct: 244 ------QALFG------------TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGL 285

Query: 164 QTLSVIVGRERVFWLCVS 181
           Q+L V  G E   W+CV 
Sbjct: 286 QSLPVAFGVETAKWICVG 303

Length = 375

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 16  LNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWF 75
           +N +YD+EIDK+NKP+ P+ SG  S    +  A I S+T   +G++      + A +I  
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRIS----LKEAKIFSITLFIVGLILSIFINIYAFLIAL 111

Query: 76  LLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFA 135
           L  ++  + L     K    +    +  L GL +    F  +  + + R +++     F 
Sbjct: 112 L--NSILLYLYAKDLKKTGLIGNLIVAYLTGLSF---IFGGLAVFNVLRIIIL-----FL 161

Query: 136 TAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRER 174
            AF    S    ++KD+ D++GD K ++ TL +  G ++
Sbjct: 162 CAFFSTWS--REIVKDIEDIEGDLKENVITLPIKYGIKK 198

Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	99.98
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.97
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.97
PRK12871	297	ubiA prenyltransferase; Reviewed	99.97
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.97
PRK12872	285	ubiA prenyltransferase; Reviewed	99.97
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PRK13591	307	ubiA prenyltransferase; Provisional	99.96
PLN02776	341	prenyltransferase	99.96
PRK13105	282	ubiA prenyltransferase; Reviewed	99.95
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.94
PRK13592	299	ubiA prenyltransferase; Provisional	99.94
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.94
PLN02922	315	prenyltransferase	99.94
PRK12875	282	ubiA prenyltransferase; Reviewed	99.93
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.91
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.9
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.77
PRK08238	479	hypothetical protein; Validated	99.75
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.16
KOG4581	359	consensus Predicted membrane protein [Function unk	98.76
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	94.95
PRK13591	307	ubiA prenyltransferase; Provisional	93.6
PRK12872	285	ubiA prenyltransferase; Reviewed	92.6
PRK12875	282	ubiA prenyltransferase; Reviewed	92.54
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	91.83
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	91.5
PLN02922	315	prenyltransferase	90.68
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	90.5
PRK13592	299	ubiA prenyltransferase; Provisional	90.41
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	89.96
PLN00012	375	chlorophyll synthetase; Provisional	89.94
PRK13105	282	ubiA prenyltransferase; Reviewed	89.85
PRK12884	279	ubiA prenyltransferase; Reviewed	89.63
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.63
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	89.32
PRK13106	300	ubiA prenyltransferase; Reviewed	89.3
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	88.77
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	88.47
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.3
PRK12392	331	bacteriochlorophyll c synthase; Provisional	87.89
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	87.76
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	87.36
PRK12871	297	ubiA prenyltransferase; Reviewed	87.32
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	87.18
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	86.84
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	86.74
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	85.83
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	85.76
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	85.59
PRK12888	284	ubiA prenyltransferase; Reviewed	85.22
PRK12882	276	ubiA prenyltransferase; Reviewed	84.83
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	84.69
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.59
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	84.52
PRK12886	291	ubiA prenyltransferase; Reviewed	82.46

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=3e-55  Score=376.14  Aligned_cols=249  Identities=57%  Similarity=0.932  Sum_probs=226.3

Q ss_pred             CccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278            1 QALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA   80 (252)
Q Consensus         1 ~~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (252)
                      |++++++++|.+..++||++|+|+||+|||+||+|||++|+++++.....+.++|+.+++..|++++..+...++++++.
T Consensus        27 ~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~~l~~al~~~~~lg~~  106 (280)
T PLN02878         27 EALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTA  106 (280)
T ss_pred             HHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999988787776777788999


Q ss_pred             hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278           81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK  160 (252)
Q Consensus        81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~  160 (252)
                      ||...||+|+||.++....+....++..+++|++.+.+++++|++...+.+.++..+++++++.+++++||+||+||||+
T Consensus       107 YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~  186 (280)
T PLN02878        107 YSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRI  186 (280)
T ss_pred             HHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHH
Confidence            99777999999999998888777777778899999888888886544455666666677788899999999999999999


Q ss_pred             cCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHH
Q 047278          161 FDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIW  240 (252)
Q Consensus       161 ~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~~  240 (252)
                      .|+||+|+++|+|++.+++..++.++|+..+..|..+...+...++..||.+++..+++|.+.+|.+++++-.+||||||
T Consensus       187 ~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiw  266 (280)
T PLN02878        187 FGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIW  266 (280)
T ss_pred             CCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHH
Confidence            99999999999999999999999999998888998888777767778999999999999999999999999999999999


Q ss_pred             HHHHHhhcc
Q 047278          241 KTQLVSLKW  249 (252)
Q Consensus       241 ~~~~~~y~~  249 (252)
                      |+||+||+.
T Consensus       267 klfy~ey~l  275 (280)
T PLN02878        267 KLFYAEYFL  275 (280)
T ss_pred             HHHHHHHHH
Confidence            999999975

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.3e-49  Score=350.11  Aligned_cols=242  Identities=36%  Similarity=0.641  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 047278            4 VPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSI   83 (252)
Q Consensus         4 ~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Ys~   83 (252)
                      +++..++.+++++||++|+|+|++|||+||++||++|+++++....++.++++.+++..|++.+.++ .++.++++.|| 
T Consensus        60 ~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys-  137 (308)
T PRK12887         60 IACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYS-  137 (308)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHc-
Confidence            3444445555559999999999999999999999999999999999999999999998887666655 57778899999 


Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcCc
Q 047278           84 QLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDI  163 (252)
Q Consensus        84 ~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G~  163 (252)
                       .||+|+||+|+.++++++..+|.++.+|.+.+.... .+.+...+...++..++.++|+.+++++||++|+|+||+.|+
T Consensus       138 -~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi  215 (308)
T PRK12887        138 -LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQI  215 (308)
T ss_pred             -CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCC
Confidence             799999999999999988888877777776543222 222223456666777778899999999999999999999999


Q ss_pred             ccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Q 047278          164 QTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMFIWKTQ  243 (252)
Q Consensus       164 ~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~~~~~  243 (252)
                      ||+|+++|+|++.+++..++.++|+..+..+.....++...+...||.+.+.+++||.+++|.+|+++-++|||||||+|
T Consensus       216 ~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~  295 (308)
T PRK12887        216 TTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLF  295 (308)
T ss_pred             cchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999888877776666545556899999999999999999999999999999999999


Q ss_pred             HHhhcc
Q 047278          244 LVSLKW  249 (252)
Q Consensus       244 ~~~y~~  249 (252)
                      |+||+.
T Consensus       296 ~~ey~~  301 (308)
T PRK12887        296 FLEYLL  301 (308)
T ss_pred             HHHHHH
Confidence            999975

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.2e-42  Score=298.48  Aligned_cols=230  Identities=14%  Similarity=0.152  Sum_probs=187.9

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA   80 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (252)
                      .++++++++++|++||+.|+|+|++|+  |+||+|+|++|++||+.+..++.++++.++..+|+.++.++ ..+..+...
T Consensus        43 ~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l~~~  121 (286)
T PRK12895         43 LIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFLFII  121 (286)
T ss_pred             HHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence            567889999999999999999999996  89999999999999999999999999998888898887766 345556677


Q ss_pred             hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278           81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK  160 (252)
Q Consensus        81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~  160 (252)
                      ||+      +||+++++|+++|...|..+..|+.     ++.|. .+.....+++.+...+|+.++|++|++||+|+|+|
T Consensus       122 yp~------~KR~t~~~~~~lG~~~g~~~l~g~~-----Av~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~  189 (286)
T PRK12895        122 DPF------LKRYTAWRHIYMGSIIGLGVLAGYL-----AVIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKI  189 (286)
T ss_pred             HHH------HHhCccccHHHHHHHHHhHHHHHHH-----HHcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            775      7999999999998877755555543     33332 11122334556677899999999999999999999


Q ss_pred             cCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHH-HHHHHH-
Q 047278          161 FDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNAST-LSFYMF-  238 (252)
Q Consensus       161 ~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~-~~f~~~-  238 (252)
                      .|+||+|+++|++++.++...++.++..+....|+... ++.|   ..|..+.+.++.|||+++|++|+++| .+||+. 
T Consensus       190 ~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~~y---~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N  265 (286)
T PRK12895        190 NGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TLWY---LAALIIIYTLVIYQHLIIDPRNPINKRMSFFNAN  265 (286)
T ss_pred             cCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hHHH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHc
Confidence            99999999999999988887888888888778887765 5544   34677788999999999999999999 778874 


Q ss_pred             ------HHHHHHHhhcc
Q 047278          239 ------IWKTQLVSLKW  249 (252)
Q Consensus       239 ------~~~~~~~~y~~  249 (252)
                            ++.++..++.+
T Consensus       266 ~~ig~~~~~~~~~~~~~  282 (286)
T PRK12895        266 SFIGFVFLIGIILSLRF  282 (286)
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence                  66666667654

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.3e-40  Score=289.84  Aligned_cols=230  Identities=16%  Similarity=0.135  Sum_probs=190.7

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      .+++++++|+++|++||++|+|+|++|+  |+||+|+|++|++|++.++..+.++++.++..+|+.+..++ ..+++...
T Consensus        44 ~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~  122 (284)
T PRK12888         44 VTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLV  122 (284)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            3578999999999999999999999998  89999999999999999988888888888887887777666 34555667


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||+      .||+++++|+++++.++..+..|+.     +..|.   .++..+++.+..++|+.++|++|++||+|+|+
T Consensus       123 ~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~-----a~~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~  188 (284)
T PRK12888        123 VYPY------AKRFTNFPHAILGLAQAVGPVGAWI-----AVTGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDR  188 (284)
T ss_pred             HHHH------hhcccchhhHHHHHHHHHHHHHHHH-----HHcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            8986      6999999999998876655444543     23332   45566666777889999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHH-HHHHH
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTL-SFYMF  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~-~f~~~  238 (252)
                      +.|+||+|+++|+|++.++...++.+++++....+...++++.|..   +..+.+.++.|||+.+|++|+++|. .||+.
T Consensus       189 ~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~  265 (284)
T PRK12888        189 RIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWI---GLAITAGAFAYEHAIVSPTDLSRVNRAFFTA  265 (284)
T ss_pred             HCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            9999999999999999988887888888888888888888887643   5567778999999999999999997 66632


Q ss_pred             -------HHHHHHHhhcc
Q 047278          239 -------IWKTQLVSLKW  249 (252)
Q Consensus       239 -------~~~~~~~~y~~  249 (252)
                             ++.++++|+++
T Consensus       266 n~~ig~~~~~~~~~~~~~  283 (284)
T PRK12888        266 NGFVGIALFGFALLDLLV  283 (284)
T ss_pred             hhHHHHHHHHHHHHHHHh
Confidence                   77788888765

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=8.9e-40  Score=286.45  Aligned_cols=228  Identities=19%  Similarity=0.182  Sum_probs=186.2

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA   80 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (252)
                      .++++++++++|++||++|||+|++|+  |+||+|+|++|++|++.+..++.++++.+.+.+|+.+..++ ..+++....
T Consensus        51 ~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~  129 (289)
T PLN02809         51 GCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFT  129 (289)
T ss_pred             HHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence            578899999999999999999999986  79999999999999999999999999999988887777766 455667789


Q ss_pred             hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHH-HHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLV-FATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      ||.      +||+++++|++.++..+..+.+||.     ++.|.   .++... .++....+|+.++|+++++||+|||+
T Consensus       130 Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~-----av~g~---~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~  195 (289)
T PLN02809        130 YPL------MKRFTFWPQAFLGLTFNWGALLGWA-----AVKGS---LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDL  195 (289)
T ss_pred             HhH------HHhcCcchHHHHHHHHHHHHHHHHH-----HHhCC---CChHHHHHHHHHHHHHHHHHHHHHHHhchhhHH
Confidence            995      7999999999988776655445542     33442   232333 25566778999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF-  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~-  238 (252)
                      |.|+||+|+++|+++..+++ .++.+++..+..+|+..++++.|..   ++.+.+.++.+|++.+|++|+++|.+.|+. 
T Consensus       196 ~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~~~~~---~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~n  271 (289)
T PLN02809        196 KVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGWPYYA---GLAAAAGHLAWQIQTVDLSSRADCNRKFVSN  271 (289)
T ss_pred             hCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence            99999999999999666665 4677778888888888888876533   677777899999999999999999999874 


Q ss_pred             ------HHHHHHHhhcc
Q 047278          239 ------IWKTQLVSLKW  249 (252)
Q Consensus       239 ------~~~~~~~~y~~  249 (252)
                            ++.++.+++.+
T Consensus       272 ~~~g~~~~~~~~~~~~~  288 (289)
T PLN02809        272 KWFGAIVFAGIVLGKLF  288 (289)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence                  66666666553

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4e-39  Score=283.36  Aligned_cols=231  Identities=14%  Similarity=0.146  Sum_probs=186.2

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      ++++++++++++|++||++|+|+|++|+  |+||+|+|++|++|++.+..++.+.++.++...|+.+..++ ..+.+...
T Consensus        54 ~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~-~~~~~~~~  132 (300)
T PRK13106         54 IFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLS-PIVALIAM  132 (300)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            3578899999999999999999999996  89999999999999999987777777777777787777766 34445567


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccchHHHHHHHHHHHHHHHHHHhhcCCC
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPV-----VITKPLVFATAFMCVLSFANGLLKDVPD  154 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~D  154 (252)
                      .||+      +||+++++|+++++..|..+..|+..     +.|...     ..+...+++.+..++|+.++|++|++||
T Consensus       133 ~Y~~------~KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D  201 (300)
T PRK13106        133 SYPY------MKRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPD  201 (300)
T ss_pred             HHhH------HhcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            8985      79999999999988877554455532     223110     1122334445567789999999999999


Q ss_pred             chhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHH
Q 047278          155 VDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLS  234 (252)
Q Consensus       155 ~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~  234 (252)
                      +|+|+|.|+||+|+++| +++++++..++.++.++....++..++++.|+.   +..+...++.+|+..++.+  ++|.+
T Consensus       202 ~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~---~~~~~~~~l~~~~~~~~~~--~~~~~  275 (300)
T PRK13106        202 AEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIA---ATILHGLIMAYAYYLASKK--GDFGR  275 (300)
T ss_pred             hhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHhCCc--hHHHH
Confidence            99999999999999999 778999998999999888889999888887643   5556678899999999988  88988


Q ss_pred             HHHH-------HHHHHHHhhccc
Q 047278          235 FYMF-------IWKTQLVSLKWK  250 (252)
Q Consensus       235 f~~~-------~~~~~~~~y~~~  250 (252)
                      .|+.       ++.++.+||+++
T Consensus       276 ~F~~n~~ig~~~~~~~~~~~~~~  298 (300)
T PRK13106        276 AFYYNIYSSIVLGLGIIIDVLLG  298 (300)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHc
Confidence            8864       777888888654

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1e-38  Score=278.97  Aligned_cols=220  Identities=17%  Similarity=0.167  Sum_probs=173.3

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA   80 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (252)
                      .++++.+|+++|++||+.|||+|++|+  |+||+|+|++|++||+.+..++.++++.++..+|+.+..++ ..++++...
T Consensus        53 ~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~-~~~~~~~~i  131 (300)
T PRK12876         53 GSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLA-VLSTLLMII  131 (300)
T ss_pred             HHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence            478999999999999999999999999  79999999999999999998888888888888898888877 455566689


Q ss_pred             hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccch----HHHHHHHHHHHHHHHHHHhhcCCCch
Q 047278           81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITK----PLVFATAFMCVLSFANGLLKDVPDVD  156 (252)
Q Consensus        81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~D~~  156 (252)
                      ||+      +||+++++|++++++.+..+..++.     ++.+++  .++    ..++..+...+|+.++|++|++||+|
T Consensus       132 Y~~------~KR~t~~~~~vLGl~~~~~~l~~~~-----Av~~~~--~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e  198 (300)
T PRK12876        132 YPY------TKRVTFLCHWILGLVYYLAILMNFF-----AIIETP--LSFSLFCMASLWGISFGMIIAANDIIYAIQDLE  198 (300)
T ss_pred             HHh------HhcCCchhHHHHHHHHHHHHHHHHH-----HHhcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHh
Confidence            996      7999999999998776654444443     333321  222    12233344566778999999999999


Q ss_pred             hhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH--HHHHHhhhcccCchHHHHH
Q 047278          157 GDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAF--ILWLRAKTVDLSSNASTLS  234 (252)
Q Consensus       157 ~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~--~l~~~~~~~d~~~~~~~~~  234 (252)
                      +|++.|+||+|+++|++++.++...++.++...+...|...++++.+.+  .+..+.+.  ++.+|.+.+|.++++.|.+
T Consensus       199 ~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  276 (300)
T PRK12876        199 FDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYL--CSLVPLTVILKTIKHYSLIDKKKSTLEQK  276 (300)
T ss_pred             hHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH--HHHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence            9999999999999999988888888888888888888988888865322  23322223  3455558888889999999


Q ss_pred             HHHH
Q 047278          235 FYMF  238 (252)
Q Consensus       235 f~~~  238 (252)
                      ||+.
T Consensus       277 ~F~~  280 (300)
T PRK12876        277 FFLG  280 (300)
T ss_pred             HHHh
Confidence            9986

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.5e-38  Score=276.54  Aligned_cols=229  Identities=14%  Similarity=0.067  Sum_probs=184.2

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMF----RSPPLLLALIIWF   75 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~----~~~~~~~~~~~~~   75 (252)
                      +++++.++++++|++||+.|+|+|++|+  ++||+|+|++|++||+.+..++..+++.+++.+    |+.+..++ ..++
T Consensus        49 ~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~  127 (294)
T PRK12873         49 IILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLAL  127 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHH
Confidence            4678999999999999999999999988  799999999999999999999999998888766    34455555 4555


Q ss_pred             HHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047278           76 LLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDV  155 (252)
Q Consensus        76 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~  155 (252)
                      +....||.      +||++.++|+++++..+.++.+||.     ++.|. .+.....+++++..++|+.++|++|++||+
T Consensus       128 ~~~~~Y~~------~KR~t~~~~~vlg~~~a~~~l~gw~-----Av~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~  195 (294)
T PRK12873        128 PPILIYPS------AKRWFAYPQAILALCWGFAVLIPWA-----AAEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADR  195 (294)
T ss_pred             HHHHHHHH------HHhccccchHHHHHHHHhHHHHHHH-----HHhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            56789996      7999999999998887766556653     34442 111223344446678999999999999999


Q ss_pred             hhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCc--hHHHH
Q 047278          156 DGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSS--NASTL  233 (252)
Q Consensus       156 ~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~--~~~~~  233 (252)
                      |||+++|+||+|+++|++ +......++.++..++..+|...++++.|..   +..+.+.++.+||+.+|++|  +++|.
T Consensus       196 edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~~~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~c~  271 (294)
T PRK12873        196 RDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVGFIFWP---FWLIASIGMQRDILKLFPEKQSIKTIG  271 (294)
T ss_pred             hhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHhCcCcccHHHHH
Confidence            999999999999999975 6666677888888888999999999887643   55666788999999999998  59999


Q ss_pred             HHHHH-------HHHHHHHhh
Q 047278          234 SFYMF-------IWKTQLVSL  247 (252)
Q Consensus       234 ~f~~~-------~~~~~~~~y  247 (252)
                      +.|..       ++.++.+++
T Consensus       272 ~~F~~n~~~G~~i~~g~~~~~  292 (294)
T PRK12873        272 NHFSNQVILGSLLLLGLILAR  292 (294)
T ss_pred             HHHHhccHHHHHHHHHHHHHh
Confidence            98875       555555543

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.9e-38  Score=278.75  Aligned_cols=228  Identities=14%  Similarity=0.146  Sum_probs=184.8

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      ++++++++++++|++||++|+|+|++|+  ++||+|+|++|++|+..++.++.++++.+++.+|+.+..++ ..+.+...
T Consensus        51 ~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~  129 (290)
T PRK12870         51 IILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIF  129 (290)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            3678899999999999999999998766  58999999999999999999999999999988887777766 45556678


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||.      .||++.++|+++++.+|..+..|+.     +..|.   .++..+++.+..++|+.++|++|++||+|+|+
T Consensus       130 ~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~-----a~~g~---~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~  195 (290)
T PRK12870        130 LYPL------AKRVFPVPQLVLAIAWGFAVLISWS-----AVTGH---LDLGTWLLWAATVFWTLGFDTVYAMSDREDDL  195 (290)
T ss_pred             Hhhh------hhhccccceeeehHHHHhHHHHHHH-----HHcCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence            9995      6999999999988877765445543     23332   34555566667789999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHH
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTV--DLSSNASTLSFYM  237 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~--d~~~~~~~~~f~~  237 (252)
                      ++|+||+|+++|++++.+++. ++.++...+...++..++++.|..   +..+...++.+|+..+  |.+|+++|.++|+
T Consensus       196 ~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~  271 (290)
T PRK12870        196 RIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHLPFWI---GLAIAAVLWARQYRRLRQANLPPLAYGQLFL  271 (290)
T ss_pred             HCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence            999999999999998887766 466666666778888888876643   4556667899999988  8889999999998


Q ss_pred             H-------HHHHHHHhhc
Q 047278          238 F-------IWKTQLVSLK  248 (252)
Q Consensus       238 ~-------~~~~~~~~y~  248 (252)
                      .       ++.++.++++
T Consensus       272 ~n~~~g~~~~~~~~~~~~  289 (290)
T PRK12870        272 QNVWIGFLLLAGMILGSL  289 (290)
T ss_pred             HhhHHHHHHHHHHHHHhh
Confidence            5       5666666554

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6e-38  Score=275.47  Aligned_cols=231  Identities=18%  Similarity=0.221  Sum_probs=186.3

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      .+++++++++++|++||++|+|+|++|+  |+||+|+|++|++|++.++.++.++++.+++..|+.+..++ +..+....
T Consensus        52 ~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~  130 (291)
T PRK12874         52 GILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLG  130 (291)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            3578889999999999999999999998  89999999999999999998888888888888887777666 45555678


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||+      +||++.++|+++++.+|.++.+|+.     ++.|.   .+.+.+++.+..++|+.++|++|++||+|+|+
T Consensus       131 ~Y~~------~KR~t~~~~~~~g~~~~~~~l~G~~-----av~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~  196 (291)
T PRK12874        131 GYSY------FKRFSSLAHLVLGLSLGLAPIAGVV-----AVLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDK  196 (291)
T ss_pred             HHhh------hcccccccHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            9996      7999999999998888766666653     33332   34445555666789999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF-  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~-  238 (252)
                      ++|+||+|+++|++++.++.........+.....+.....++.++   .+..+.+..+.+|++.++.+|++.|+.||.. 
T Consensus       197 ~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn  273 (291)
T PRK12874        197 KRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAY---LGVIVSALILLYEHYLVRKDFKKIDKAFFTLN  273 (291)
T ss_pred             HcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHH---HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            999999999999999988876666666666666666656555442   3555666789999999988888889998864 


Q ss_pred             ------HHHHHHHhhccc
Q 047278          239 ------IWKTQLVSLKWK  250 (252)
Q Consensus       239 ------~~~~~~~~y~~~  250 (252)
                            ++.+..+||++|
T Consensus       274 ~~l~~l~~~~~~~~~~~~  291 (291)
T PRK12874        274 GYLGIVFFIFIVLDVLFK  291 (291)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence                  666777888876

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=2.2e-37  Score=271.52  Aligned_cols=231  Identities=16%  Similarity=0.181  Sum_probs=183.0

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      ++++++++++++|++||++|+|+|++|+  |+||+|+|++|++++..+..++.++++.++..+|..+..++ ..+.+..+
T Consensus        41 ~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~  119 (282)
T TIGR01475        41 ILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLI  119 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            4678999999999999999999999994  89999999999999999988888778878887787666665 34555678


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||.      +||++.++|++.++..|.++..|+.     +..|.. +.....+.+.+..++|+.+++++|++||+|+|+
T Consensus       120 ~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~-----a~~g~~-~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~  187 (282)
T TIGR01475       120 IYPY------TKRFTFLCHYVLGSTYGLAPLAGWV-----AVIGTI-SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDR  187 (282)
T ss_pred             HHhh------HhccccccHHHHHHHHHHHHHHHHH-----HHhCCc-cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence            8985      7999999999998877765555543     233321 111344555566788999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHH-HHHH
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLS-FYMF  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~-f~~~  238 (252)
                      ++|+||+|+++|+|+++++......+++......+...+.++.|..   +..+....+.++++..|.+|+++|.+ ||..
T Consensus       188 ~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~  264 (282)
T TIGR01475       188 KNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALL---ALILIGLILAYEHYIVDPGDQSKIQRAFFYA  264 (282)
T ss_pred             HcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999999999999888888888777778888777876643   34445577889999999999999986 5543


Q ss_pred             -------HHHHHHHhhc
Q 047278          239 -------IWKTQLVSLK  248 (252)
Q Consensus       239 -------~~~~~~~~y~  248 (252)
                             +..++..+|+
T Consensus       265 ~~~l~~~~~~g~~~~~~  281 (282)
T TIGR01475       265 NGFLSITFLIGVIIDVL  281 (282)
T ss_pred             hHHHHHHHHHHHHHHHh
Confidence                   4456666664

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=3.7e-37  Score=269.90  Aligned_cols=227  Identities=15%  Similarity=0.161  Sum_probs=180.0

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      ++++.+++++++|++||++|+|+|++|+  |+||+|||++|++|+..++.++..+++.+++.+|+.+..++ ..+.+..+
T Consensus        47 ~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~  125 (282)
T PRK12848         47 FVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAW  125 (282)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            3577889999999999999999999876  68999999999999999999999999988888887776666 45556678


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||.      .||++.+++++.++..|..+.+++..     ..+   +.+...+++.+...+|+...++.|++||+|+|+
T Consensus       126 ~Y~~------~Kr~~~~~~~~~g~~~g~~~~~g~~a-----~~~---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~  191 (282)
T PRK12848        126 IYPF------MKRYTHLPQVVLGAAFGWGIPMAFAA-----VQG---SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDL  191 (282)
T ss_pred             HHHh------HHhcCcccHHHHHHHHHHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence            9984      69999999999888777655555432     223   245556666667889999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF-  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~-  238 (252)
                      ++|+||+|+++|+|++.+.. .+..+........++..++++.|..   +..+....+.+|++.+|.+|+++|+++|.. 
T Consensus       192 ~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n  267 (282)
T PRK12848        192 KIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGLGWAYYW---GLLVAAALFVYQQKLIRDREREACFKAFLNN  267 (282)
T ss_pred             HcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence            99999999999999887776 3455555555666776677766543   445666788899999999999999888864 


Q ss_pred             ------HHHHHHHhh
Q 047278          239 ------IWKTQLVSL  247 (252)
Q Consensus       239 ------~~~~~~~~y  247 (252)
                            ++.++.+||
T Consensus       268 ~~~g~~l~~~~~~~~  282 (282)
T PRK12848        268 NWVGLVLFAGIAASY  282 (282)
T ss_pred             cHHHHHHHHHHHHhC
Confidence                  555555554

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=7.9e-37  Score=267.66  Aligned_cols=227  Identities=16%  Similarity=0.204  Sum_probs=178.5

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      ++++.+++++++|++|||+|+|+|++|+  |+||+|+|++|++|++.+..++.++++.+++..|+.+..++ +.+.+..+
T Consensus        45 ~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~  123 (281)
T TIGR01474        45 FTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVA  123 (281)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHH
Confidence            3567889999999999999999999776  69999999999999999999999999999888887777666 46666789


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||.      +||++.+++++.++..+..+..|++     +..|.   .++..+++.....+|+.+++++|++||+|+|+
T Consensus       124 ~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~-----a~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~  189 (281)
T TIGR01474       124 TYPF------MKRITYWPQLVLGLAFGWGALMGWA-----AVTGD---LSTAAWVLYLANILWTLGYDTIYAMQDKEDDI  189 (281)
T ss_pred             Hhch------hcccccccHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence            9995      7999999999988776655555543     23332   34555555566788999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF-  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~-  238 (252)
                      ++|+||+|+++|+++++.. ..+..++.....+.+...+.++.|..   +..+....+.+++.++|.+|+++|+++|+. 
T Consensus       190 ~~G~~tlpv~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~  265 (281)
T TIGR01474       190 KIGVKSTALRFGDNTKPWL-GGLYALMILLLALAGLIAGLGPVYYL---GLAAAALLLIRQIATLDIRDPENCLKLFKAN  265 (281)
T ss_pred             HcCCCcccHHhhhhhHHHH-HHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999876444 44454544455556666677766543   445566788899999999999999999985 


Q ss_pred             ------HHHHHHHhh
Q 047278          239 ------IWKTQLVSL  247 (252)
Q Consensus       239 ------~~~~~~~~y  247 (252)
                            +..+...||
T Consensus       266 ~~~~~~l~~~~~~~~  280 (281)
T TIGR01474       266 NYVGLLLFAGIALGW  280 (281)
T ss_pred             hHHHHHHHHHHHHHh
Confidence                  455555555

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.9e-36  Score=264.77  Aligned_cols=218  Identities=16%  Similarity=0.212  Sum_probs=172.4

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      ++++++++++++|++|||+|+|+|++|+  |+||+++|++|++|+..+..++.++++.+++.+|+.+..++ +.+.+..+
T Consensus        50 ~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~  128 (285)
T PRK12847         50 FIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIV  128 (285)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            4678899999999999999999999876  68999999999999999999999999988888887777666 45666788


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||.      .||++.+++++.++.++..+..++.     +..|.   .++..+++.+..++|+.+++++|++||+|+|+
T Consensus       129 ~Y~~------~Kr~~~~~~~~~g~~~~~~~l~~~~-----a~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~  194 (285)
T PRK12847        129 LYPL------MKRFFYWPQLFLGFTFNMGILMAFA-----AVQNQ---LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDL  194 (285)
T ss_pred             hccc------cccCCcccHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence            9995      6999999999987776654444442     23332   45566666677889999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (252)
                      ++|+||+|+++|+|++.++........+.. ...++..+.++.+.+   ++.+....+.+++..+|.+|+++|++.|..
T Consensus       195 ~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~y~---~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~  269 (285)
T PRK12847        195 KIGVKSTAIYFGNKTRKYILRLYIISLILW-LILGIISSLHNIFYL---AILAAAGIFYYQYKLLDFDNPANCMYAFKA  269 (285)
T ss_pred             HcCCchhHHHhccccHHHHHHHHHHHHHHH-HHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999988877665444443 445555554433322   333445688899999999999999988875

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.6e-36  Score=267.58  Aligned_cols=228  Identities=18%  Similarity=0.168  Sum_probs=179.1

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      ++++++++++++|++|||+|+|+|++|+  ++||+++|++|++|+..+..++.++++.+.+..|+++..++ +.+++..+
T Consensus        77 ~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~  155 (314)
T PRK12878         77 FFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVA  155 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence            4678999999999999999999999877  79999999999999999999999999988888787666666 46666788


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||.      +||++.+++...++..+..+.+||+.     ..|.   .++..+.+.+..++|+.+.++++++||+|+|+
T Consensus       156 ~Y~~------~KR~t~~~~~~~Gl~~~~~~l~g~~a-----~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~  221 (314)
T PRK12878        156 AYPF------MKRITWWPQFFLGLAFSWGALMGWAA-----HFGS---LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDA  221 (314)
T ss_pred             HHHH------HHhcCCcchHHHHHHHHHHHHHHHHH-----HhCC---CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence            9985      79999999998877666544455432     2332   45555566666788999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF-  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~-  238 (252)
                      ++|+||+|+++|+++++++.. +..+......+.+....+++.|++   +.......+.+|+.++|.+|+++|+++|+. 
T Consensus       222 ~aGi~slpv~~G~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~n  297 (314)
T PRK12878        222 LIGVKSTARLFGDHTKTWLVL-FYGLAVLLMGLAFWLAGVPLLALL---GLLAAAAHLAWQIARLDIDDPDQCLRLFKSN  297 (314)
T ss_pred             HcCCcccchHhchhhHHHHHH-HHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHcccCChHHHHHHHHHh
Confidence            999999999999999888774 344444445556666666776543   333344568899999999999999999985 


Q ss_pred             ------HHHHHHHhhc
Q 047278          239 ------IWKTQLVSLK  248 (252)
Q Consensus       239 ------~~~~~~~~y~  248 (252)
                            ++.++..||+
T Consensus       298 ~~~~~ll~~~l~~~~~  313 (314)
T PRK12878        298 RDAGLLIFLGLVVGGL  313 (314)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence                  4556666664

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.4e-36  Score=264.50  Aligned_cols=229  Identities=18%  Similarity=0.209  Sum_probs=179.2

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~   79 (252)
                      ++++.+++++++|++||++|+|+|++|+  |+||+++|++|++|+..+...+.+.++.+....|+.+..++ ..+.+...
T Consensus        47 ~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~~~  125 (291)
T PRK12886         47 ILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLS-PPALFFLL  125 (291)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3578899999999999999999999998  79999999999999998876666666666667787777666 34555678


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||+      +||++.+++++.++.++.++..|+.     +..|.   .+.+.+++.+...+|+.++|++|++||+|+|+
T Consensus       126 ~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g~~-----a~~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~  191 (291)
T PRK12886        126 LYSY------CKRFTALAHVVLGFCLALAPLGAWI-----AIRGT---IELPAILLGLAVLFWVAGFDILYALQDLEFDR  191 (291)
T ss_pred             HHhh------hhccccccHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHH
Confidence            9995      6999999999998877655444443     23332   35555666666788999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCch-HHHHHHHHH
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSN-ASTLSFYMF  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~-~~~~~f~~~  238 (252)
                      ++|+||+|+++|++++.++......+++......+.....++.|..   +..+....+.++++.++.+|+ ++|+++|..
T Consensus       192 ~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  268 (291)
T PRK12886        192 KEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLA---GLAVTGILLLYEHWLLRGGDLTRLDAAFFNM  268 (291)
T ss_pred             HcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            9999999999999999988877777777777777777777876643   333455566689899999885 589897764


Q ss_pred             -------HHHHHHHhhc
Q 047278          239 -------IWKTQLVSLK  248 (252)
Q Consensus       239 -------~~~~~~~~y~  248 (252)
                             ++.++.+|+.
T Consensus       269 ~~~~~~~l~~~~~~~~~  285 (291)
T PRK12886        269 NGYISVTLFAATLFDRL  285 (291)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence                   5555555554

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=4.5e-36  Score=264.04  Aligned_cols=217  Identities=19%  Similarity=0.300  Sum_probs=181.2

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNKP--DLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA   80 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~--~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (252)
                      .++++++++++|++||++|+|+||+|+|  +||+|||++|+++++.+..++.++++.+++.+|+.+..++ ..+.++.+.
T Consensus        53 ~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~  131 (289)
T COG0382          53 FLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALA  131 (289)
T ss_pred             HHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence            5678999999999999999999999997  9999999999999999999999999999999998776666 567778899


Q ss_pred             hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278           81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK  160 (252)
Q Consensus        81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~  160 (252)
                      |+.      +||+++++|++++...+..+..|+.     +..|.   .+...+++.++..+|+.++|++|++||+|+|++
T Consensus       132 Y~~------~Kr~~~~~~~~lg~~~~~~~~~g~~-----a~~~~---~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~  197 (289)
T COG0382         132 YPF------LKRFTFLPQLVLGLAFGLGALAGAA-----AVGGS---LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRK  197 (289)
T ss_pred             HHH------hhcCCchHHHHHHHHHHHHHHHHHH-----HHhCc---cchHHHHHHHHHHHHHHHHHHHHhccCccchHh
Confidence            964      8999999999998877755445442     23221   355566777788899999999999999999999


Q ss_pred             cCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278          161 FDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPL-SKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF  238 (252)
Q Consensus       161 ~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~-~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (252)
                      .|+||+|+.+|++++..++...+ .....+...++...... .+   ..++...+..+.+|+..+|.+++++|.++|..
T Consensus       198 ~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (289)
T COG0382         198 AGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLGLIY---LLGLLVAALLLLYQILIVDVRDPPACFALFDV  272 (289)
T ss_pred             cCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhchHHH---HHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence            99999999999999999988777 55555556666665553 33   34666777889999999999999999999986

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=100.00  E-value=6.5e-38  Score=262.90  Aligned_cols=227  Identities=15%  Similarity=0.105  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278            4 VPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY   81 (252)
Q Consensus         4 ~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y   81 (252)
                      +++++||+++|++||..|+|+|++++  +.||++||++|++||..+...++.+++.+..++|+.+..++ ..++.+.+.|
T Consensus       110 ~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~y  188 (353)
T KOG1381|consen  110 VGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITY  188 (353)
T ss_pred             ccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEe
Confidence            57899999999999999999999987  78999999999999999999999999999999998888776 5677778899


Q ss_pred             cCCccccccccCCCchhHHHHHH--HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           82 SIQLPFLRWKGHPFLAPFSMMIL--MGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        82 s~~~pp~rlKr~~~~~~~~~~~~--~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      |.      +||+++++|++++..  ||.  .+||     +++-|..  .+....-+++...+|++.+|++|+|||.++|.
T Consensus       189 pl------~kr~TY~pq~vLgltfnwGA--llGw-----~A~~g~~--~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDv  253 (353)
T KOG1381|consen  189 PL------MKRFTYWPQLVLGLTFNWGA--LLGW-----CALKGSL--SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDV  253 (353)
T ss_pred             eh------hhhcchhHHHHHhhhcchhh--hhcc-----hhhcCcc--ChhhhhHHHHhhhhhhhhhhhhhhcccchhhh
Confidence            96      899999999998643  332  2343     3444431  12223345566778999999999999999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF-  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~-  238 (252)
                      +.|+||++.+||+++ +.+..++-......+..+|+.+++.+.|+.   ++.+.+.+|.+|+.++|++||++|+++|.. 
T Consensus       254 k~gvkSTALrfG~nT-K~wl~gf~a~~ia~La~aG~~s~q~~pyy~---~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN  329 (353)
T KOG1381|consen  254 KIGVKSTALRFGDNT-KPWLSGFGAAQIASLAAAGIASDQTWPYYA---ALGAVAARLGSQIYKVDIDNPSDCWKKFKSN  329 (353)
T ss_pred             HhcchhhhhhcCCCC-chHHhhhhHHHHHHHHHhhhccCCCchHHH---HHHHHHHHHHhheeeeecCChHHHHHHHHhc
Confidence            999999999999984 555555677778888899999999987744   456777999999999999999999999974 


Q ss_pred             ------HHHHHHHhhccc
Q 047278          239 ------IWKTQLVSLKWK  250 (252)
Q Consensus       239 ------~~~~~~~~y~~~  250 (252)
                            +..+...+|+.|
T Consensus       330 ~ntGli~~~~i~~d~llk  347 (353)
T KOG1381|consen  330 SNTGLILFSGIVLDTLLK  347 (353)
T ss_pred             CcchHHHHHHHHHHHHHH
Confidence                  444555566554

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.7e-35  Score=254.68  Aligned_cols=226  Identities=22%  Similarity=0.319  Sum_probs=168.2

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY   81 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y   81 (252)
                      ++++.+++++++|++||++|+|+|++|+|+||+++|++|++|++.++.++.++++.+++.+|+.+..++ ..+.+..+.|
T Consensus        43 ~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Y  121 (276)
T PRK12882         43 AFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLY  121 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999888887666665 4555567899


Q ss_pred             cCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhc
Q 047278           82 SIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKF  161 (252)
Q Consensus        82 s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~  161 (252)
                      |.     |+||+|.++|++++...|..+..|+      +..+..  .....+.+.+..++|+.++|++||+||+|+|+++
T Consensus       122 t~-----~lK~~~~~g~~~vg~~~g~~~~~g~------~~~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~  188 (276)
T PRK12882        122 AE-----TLKGTPGLGNASVAYLTGSTFLFGG------AAVGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAE  188 (276)
T ss_pred             HH-----HHhcccchhHHHHHHHHHHHHHHHH------HHhccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHc
Confidence            84     5899999899988766664333332      122211  1223334445566788899999999999999999


Q ss_pred             CcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-HH
Q 047278          162 DIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF-IW  240 (252)
Q Consensus       162 G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~-~~  240 (252)
                      |+||+|+++|+|++.++......+..............++.|...  ........+.++.+..|.+|+++|+++|+. .|
T Consensus       189 G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~  266 (276)
T PRK12882        189 GARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGLWYLVL--VAPADLVMLAAAYRSLKKTDPTASQKLLKYGMF  266 (276)
T ss_pred             CCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999999887766655554433222234455554321  122223445567788888999999998875 45


Q ss_pred             HHH
Q 047278          241 KTQ  243 (252)
Q Consensus       241 ~~~  243 (252)
                      -+.
T Consensus       267 ~g~  269 (276)
T PRK12882        267 LAL  269 (276)
T ss_pred             HHH
Confidence            444

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.3e-34  Score=249.29  Aligned_cols=219  Identities=19%  Similarity=0.325  Sum_probs=169.0

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY   81 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y   81 (252)
                      +.++.+++++++|++||++|+|+|++|+|+||+++|++|+++++.++.++.++++.++..+|+....+. +.+.+.++.|
T Consensus        42 ~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Y  120 (279)
T PRK12884         42 GFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILY  120 (279)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999999999998888887666665 4566678899


Q ss_pred             cCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhc
Q 047278           82 SIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKF  161 (252)
Q Consensus        82 s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~  161 (252)
                      |.     ++||+++.++++.+..+|.+...++.     +. +.   .+...+++....++|+.+.++++|++|+|+|+++
T Consensus       121 s~-----~lK~~~~~~~~~~~~~~~~~~~~g~~-----~~-~~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~  186 (279)
T PRK12884        121 NW-----KLKEYGLIGNLYVAFLTGMTFIFGGI-----AV-GE---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLR  186 (279)
T ss_pred             HH-----hhccccchhHHHHHHHHHHHHHHHHH-----Hh-CC---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHc
Confidence            95     47999988999988777754444432     22 21   1224445555667889999999999999999999


Q ss_pred             CcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHh-hhcccCchHHHHHHHHH
Q 047278          162 DIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRA-KTVDLSSNASTLSFYMF  238 (252)
Q Consensus       162 G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~-~~~d~~~~~~~~~f~~~  238 (252)
                      |+||+|+++|+|++.++........++...........++.|..   ...+....+.+++ +..+.+|+++|+++...
T Consensus       187 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  261 (279)
T PRK12884        187 GARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLA---PVLVADLIFLYSAYSLLRSQDRETIRKVRKI  261 (279)
T ss_pred             CCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            99999999999999998887777777655555555555665533   2334445555664 66777778888776443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=6.5e-34  Score=249.18  Aligned_cols=223  Identities=18%  Similarity=0.254  Sum_probs=164.8

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY   81 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y   81 (252)
                      ++++++++++++|++||++|+|+|++|+|+||+|+|++|+++++.++..+.++++.++...|+.+..++ +.+.+..+.|
T Consensus        42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y  120 (279)
T PRK09573         42 AALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLY  120 (279)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999998888887777666 4555667899


Q ss_pred             cCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhc
Q 047278           82 SIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKF  161 (252)
Q Consensus        82 s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~  161 (252)
                      |.     ++||++.++|++++...|..+..|+.     +..+     ....+++....++|+.+++++||+||+|+|+++
T Consensus       121 s~-----~lKr~~~~~~~~vg~~~G~~~~~g~~-----~~~~-----~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~  185 (279)
T PRK09573        121 AK-----DLKKTGLIGNLIVAYLTGLSFIFGGL-----AVFN-----VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKE  185 (279)
T ss_pred             HH-----HHhcCCcHHHHHHHHHHHHHHHHHHH-----HHcc-----chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHC
Confidence            94     37999999999998877765444442     2222     122333444556788899999999999999999


Q ss_pred             CcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH-hhhcccCchHHHHHHHHH-H
Q 047278          162 DIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLR-AKTVDLSSNASTLSFYMF-I  239 (252)
Q Consensus       162 G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~-~~~~d~~~~~~~~~f~~~-~  239 (252)
                      |+||+|+++|+|++.++......+..............++.|..   +..+....+.++ .+..+.+|+++|.+-.+. .
T Consensus       186 G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  262 (279)
T PRK09573        186 NVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLI---VVIICDILFIIAMLILLKNPSIEGASKASKYLK  262 (279)
T ss_pred             CCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999998776665555444333333335555533   222233344444 455666778888766543 4


Q ss_pred             HHHH
Q 047278          240 WKTQ  243 (252)
Q Consensus       240 ~~~~  243 (252)
                      +.+|
T Consensus       263 ~~m~  266 (279)
T PRK09573        263 IIMI  266 (279)
T ss_pred             HHHH
Confidence            4433

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=4.6e-34  Score=254.30  Aligned_cols=212  Identities=18%  Similarity=0.321  Sum_probs=160.7

Q ss_pred             HHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHHHhc
Q 047278           10 NIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRS-------PPLLLALIIWFLLGSAYS   82 (252)
Q Consensus        10 ~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~-------~~~~~~~~~~~~l~~~Ys   82 (252)
                      ++++|++|||+|+|+|++|+|+||+++|++|++|++.+..++..+++.++..++.       +.+....+.+++++++||
T Consensus        63 ~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS  142 (331)
T PRK12392         63 TGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYS  142 (331)
T ss_pred             HHHHhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhc
Confidence            4568999999999999999999999999999999999998888888877766542       222222245667889999


Q ss_pred             CCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcC
Q 047278           83 IQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFD  162 (252)
Q Consensus        83 ~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G  162 (252)
                        .||+|+||+++.++..+++.++.....++     .+..+.   .++..+++.+..++|+.+++++||+||+|+|++.|
T Consensus       143 --~~P~~lKr~~~~g~~~vGl~~~~~~~~~~-----~a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G  212 (331)
T PRK12392        143 --APPLKLKKNILTSAPAVGFSYGFITFLSA-----NALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGG  212 (331)
T ss_pred             --CCchhhhccchhHHHHHHHHHHHHHHHHH-----HHHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcC
Confidence              69999999998888887766654322222     233442   45555566667788999999999999999999999


Q ss_pred             cccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHH
Q 047278          163 IQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFY  236 (252)
Q Consensus       163 ~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~  236 (252)
                      +||+|+++|++++.+++...+.++.+..+..++...+++.+.+   ...+.+.++.+|.+.  .+||++-.+|-
T Consensus       213 ~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~q~~l--~r~p~~~~~~~  281 (331)
T PRK12392        213 LKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVLMYF---ILVGLVLNIVIQIQL--YRDPKGGISFM  281 (331)
T ss_pred             CeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHH--HhChhhhhHHH
Confidence            9999999999999999887776777777788888888865533   344555677777764  33455444443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=1.5e-33  Score=250.39  Aligned_cols=178  Identities=21%  Similarity=0.260  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 047278            4 VPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSI   83 (252)
Q Consensus         4 ~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Ys~   83 (252)
                      ++..++++++|++|||+|+|+|++|+|+||+++|++|+++++.+..++..+++.+++.+|++...++ +.+++.+++|| 
T Consensus        72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt-  149 (314)
T PRK07566         72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYS-  149 (314)
T ss_pred             HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhc-
Confidence            4566689999999999999999999999999999999999999999999999988888887666665 45666789999 


Q ss_pred             CccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcCc
Q 047278           84 QLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDI  163 (252)
Q Consensus        84 ~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G~  163 (252)
                       .||+++||+++++|+++++.+|..+..+.+    .+..+.  ..++..++..+...+++.+++.+||++|+|+|+++|+
T Consensus       150 -~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~----~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~  222 (314)
T PRK07566        150 -APPLRLKQNGWLGNYAVGLSYEGLPWWAGA----AAFGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGL  222 (314)
T ss_pred             -CCccccccccchhhHHHHHHHHHHHHHHHH----HHhccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCC
Confidence             789999999988999998766532222211    122211  2345555555566678889999999999999999999


Q ss_pred             ccchhhhchHHHHHHHHHHHHHHHHHH
Q 047278          164 QTLSVIVGRERVFWLCVSMMLTAYGAA  190 (252)
Q Consensus       164 ~Tl~v~~G~~~~~~l~~~l~~~~~~~~  190 (252)
                      ||+|+++|++++++++..+..+.++..
T Consensus       223 ~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        223 RSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             cccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877776666554

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=2.7e-33  Score=247.03  Aligned_cols=234  Identities=13%  Similarity=0.070  Sum_probs=170.4

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLG   78 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~   78 (252)
                      ++++++++++++|++|||+|+|+|++|+  |+||+++|++|++|+..++.++.++++.+++. .|+.+..++.+......
T Consensus        49 ~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~  128 (296)
T PRK04375         49 TLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYV  128 (296)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999988  89999999999999999999999888888755 45555554422222345


Q ss_pred             HHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278           79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD  158 (252)
Q Consensus        79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D  158 (252)
                      ..||.     ++||+++.++.+.++..+.++..|+.     +..|   +.++..+++.+..++|+...+..++++|+|||
T Consensus       129 ~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~g~~-----a~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~  195 (296)
T PRK04375        129 VVYTL-----WLKRRTPQNIVIGGAAGAMPPLIGWA-----AVTG---SLSWEALILFLIIFLWTPPHFWALAIFRKDDY  195 (296)
T ss_pred             HHhcc-----chhcCCccchHHHHHHHHhHHHHHHH-----HhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            68885     48999976555555544444444543     2333   24555666677788999999999999999999


Q ss_pred             HhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278          159 RKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF  238 (252)
Q Consensus       159 ~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (252)
                      +++|+||+|+++|++++++.......+......+.......++.|..  .+....+..+.++++.++.+|+++|++.|..
T Consensus       196 ~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  273 (296)
T PRK04375        196 AAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLV--VALLLGAWFLYYAWRLYRKDDRKWARKLFRY  273 (296)
T ss_pred             HHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHH
Confidence            99999999999999998887665554444433333333445665533  1334455677788999999899999877764


Q ss_pred             -------HHHHHHHhhccc
Q 047278          239 -------IWKTQLVSLKWK  250 (252)
Q Consensus       239 -------~~~~~~~~y~~~  250 (252)
                             ++.+...|++++
T Consensus       274 s~~~~~~i~~~~~~~~~~~  292 (296)
T PRK04375        274 SINYLTLLFVALLVDHLLL  292 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence                   455555665543

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=6.1e-33  Score=243.51  Aligned_cols=188  Identities=20%  Similarity=0.270  Sum_probs=148.0

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHh
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPP-LLLALIIWFLLGSAY   81 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~-~~~~~~~~~~l~~~Y   81 (252)
                      ++++.+.++++|++|||+|+|+|++|+|+||+++|++|+++++....++..+++.+++.++++. ..++ ..+.+.+++|
T Consensus        44 ~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Y  122 (283)
T TIGR01476        44 LMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIY  122 (283)
T ss_pred             HHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhee
Confidence            4678889999999999999999999999999999999999999999999999998888877655 3333 4566678999


Q ss_pred             cCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhc
Q 047278           82 SIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKF  161 (252)
Q Consensus        82 s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~  161 (252)
                      |  .||+|+||+++++++.+++..+.....+.     ....+   ..++..++..+...+++.+++.+||+||+|+|+++
T Consensus       123 s--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~  192 (283)
T TIGR01476       123 S--MPPIKLKRNGWLGPPAVGLSYEGLPWMAG-----HAIFA---PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQL  192 (283)
T ss_pred             c--CchhhhccCCCccHHHHHHHHHHHHHHHH-----HHHhC---CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHc
Confidence            9  79999999998899988765442211111     12222   13555555555667788899999999999999999


Q ss_pred             CcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 047278          162 DIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPL  201 (252)
Q Consensus       162 G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~  201 (252)
                      |+||+|+++|+|++++++..+....+...+........++
T Consensus       193 G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~  232 (283)
T TIGR01476       193 GLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPW  232 (283)
T ss_pred             CCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            9999999999999999988877777765554444444544

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=2.4e-32  Score=239.13  Aligned_cols=223  Identities=13%  Similarity=0.094  Sum_probs=163.6

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~~   79 (252)
                      .++..++++++|++||++|+|+|++|+  |+||+|+|++|++|+..++..+.++++.++.. +|+.+.....+...+..+
T Consensus        42 ~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~  121 (279)
T PRK12869         42 LIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAV  121 (279)
T ss_pred             HHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            568889999999999999999999988  89999999999999999999999999988877 675543332234445667


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDR  159 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~  159 (252)
                      .||.     ++||+++.++++.++.++.++..|+.     +..|.   .+...+++.+..++|+.+.....+++|+|||+
T Consensus       122 ~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~-----a~~g~---~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~  188 (279)
T PRK12869        122 VYTI-----WLKPRTWLNIVIGGFAGNAAALAGYA-----SGTGS---LDLEAVLLSFLIYLWTPGHIWSLALKYREDYR  188 (279)
T ss_pred             hhCc-----ccccCChHHHHHHHHHHHHHHHHHHH-----HHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence            8885     38999997766666554444434432     22232   45555666666778888877667889999999


Q ss_pred             hcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-
Q 047278          160 KFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF-  238 (252)
Q Consensus       160 ~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~-  238 (252)
                      ++|+||+|+++|+|++.+....+..+........+. ...++.|...  .....+..+.++.+..+.+|+++|++.|+. 
T Consensus       189 ~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s  265 (279)
T PRK12869        189 RAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGLIGLIL--VAILSAALMATSIRALLNPTKEEAWKMFKAS  265 (279)
T ss_pred             HcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHH--HHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Confidence            999999999999999998877666665555555554 5667766331  112233456677777887888899887764 


Q ss_pred             HHH
Q 047278          239 IWK  241 (252)
Q Consensus       239 ~~~  241 (252)
                      +|-
T Consensus       266 ~~~  268 (279)
T PRK12869        266 SPY  268 (279)
T ss_pred             HHH
Confidence            444

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=2.8e-32  Score=238.99  Aligned_cols=221  Identities=15%  Similarity=0.116  Sum_probs=164.9

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH-H
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMG-VMFRSPPLLLALIIWFL-L   77 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~-l   77 (252)
                      .+++++++++++|++|||+|+|+|++|+  |+||+++|++|++|+..++.++.++++.+. ...|+....++ ..+.+ .
T Consensus        40 ~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~  118 (280)
T TIGR01473        40 TLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFY  118 (280)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence            3578999999999999999999999977  899999999999999999999998888844 44676555555 34443 3


Q ss_pred             HHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 047278           78 GSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDG  157 (252)
Q Consensus        78 ~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~  157 (252)
                      .+.||..     +||+++.++++.++.++.++..|+.     +..|.   .++..+++.....+|+...+..++++|+||
T Consensus       119 ~~~Yt~~-----lKr~~~~~~~v~~~~g~~~~l~g~~-----a~~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~~~~d  185 (280)
T TIGR01473       119 VIVYTIW-----LKRRTPQNTVIGGFAGAVPPLIGWA-----AVTGS---ISLGAWLLFAIIFLWQPPHFWALALKYKDD  185 (280)
T ss_pred             HhhcChh-----hccCCchhHHHHHHHHHHHHHHHHH-----HhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            6789942     7999998777766554444444432     22232   355555566667789888888889999999


Q ss_pred             hHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccC-chHHHHHHH
Q 047278          158 DRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLS-SNASTLSFY  236 (252)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~-~~~~~~~f~  236 (252)
                      |+++|+||+|+++|+|++.+..............+.+.....++.|..  .+.......+.++++..|.+ |+++|++.|
T Consensus       186 d~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f  263 (280)
T TIGR01473       186 YRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLI--VATLLGALFLYLAFKFYRDPTDRKKARKLF  263 (280)
T ss_pred             HHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH--HHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            999999999999999988877665555545444445556667776632  24445556788899888887 777898877


Q ss_pred             HH
Q 047278          237 MF  238 (252)
Q Consensus       237 ~~  238 (252)
                      +.
T Consensus       264 ~~  265 (280)
T TIGR01473       264 KF  265 (280)
T ss_pred             HH
Confidence            64

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=6.4e-32  Score=243.70  Aligned_cols=228  Identities=21%  Similarity=0.315  Sum_probs=157.7

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMF-------RSPPLLLALIIWF   75 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~   75 (252)
                      +++..++++++|++|||+|+|+|++|+|+||+++|++|+++++.....+..+++.+++.+       ++....++ +.++
T Consensus       129 ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~-l~gi  207 (375)
T PLN00012        129 LMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA-LGGS  207 (375)
T ss_pred             HHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-HHHH
Confidence            466778899999999999999999999999999999999999987666666666555543       22233334 4566


Q ss_pred             HHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047278           76 LLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDV  155 (252)
Q Consensus        76 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~  155 (252)
                      ++.++||  .||+++||+++++++.++...+.   ++++.  +.+..|.   .++..+++.+..++|+.+++++||+||+
T Consensus       208 ~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~---lp~~~--g~a~~g~---~s~~~illal~~~l~~lai~ivnd~~Di  277 (375)
T PLN00012        208 LLSYIYS--APPLKLKQNGWIGNYALGASYIS---LPWWA--GQALFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSI  277 (375)
T ss_pred             HHhhhhc--CCchhhhHhccHhHHHHHHHHHH---HHHHH--HHHHcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            6789999  79999999999999887655442   33321  1233442   4555666666677899999999999999


Q ss_pred             hhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHH
Q 047278          156 DGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSF-PLSKLVTVICHSILAFILWLRAKTVDLSSNASTLS  234 (252)
Q Consensus       156 ~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~  234 (252)
                      |+|+++|+||+|+++|++++++++..++.+.....  +++.... .+.|....  ..+....+.++.+ ...+||+++..
T Consensus       278 e~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~--~~~l~~~~~~~y~~~~--~~l~l~~l~~~~~-~~~~~p~~~~~  352 (375)
T PLN00012        278 EGDRALGLQSLPVAFGVETAKWICVGSIDITQLSV--AGYLLAIGKPYYALAL--LGLIIPQIFFQFK-YFLPDPVKNDV  352 (375)
T ss_pred             hhHHHcCCcccceeechHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHH--HHHHHHHHHHHHH-HHhcCHHHHHH
Confidence            99999999999999999999998765444443322  2333222 22221111  1222233444433 34459999988


Q ss_pred             HHHH------HHHHHHHh
Q 047278          235 FYMF------IWKTQLVS  246 (252)
Q Consensus       235 f~~~------~~~~~~~~  246 (252)
                      .|..      .++.+...
T Consensus       353 ~~~~~a~~~~~~~~l~~~  370 (375)
T PLN00012        353 KYQASAQPFLVFGLLVTA  370 (375)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            8863      55554443

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=1.7e-31  Score=236.40  Aligned_cols=178  Identities=22%  Similarity=0.408  Sum_probs=139.7

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFR-------SPPLLLALIIWF   75 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~-------~~~~~~~~~~~~   75 (252)
                      ++++.++++++|.+|||+|+|.|+.|+|+||+++|++|++++......+..+++.++..+.       ++...++ +.++
T Consensus        60 ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~  138 (306)
T TIGR02056        60 LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGS  138 (306)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHH
Confidence            4667899999999999999999999999999999999999999988888887777766542       2334444 5667


Q ss_pred             HHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047278           76 LLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDV  155 (252)
Q Consensus        76 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~  155 (252)
                      +.+++||  .||+|+||+++++++.++...+..   +++.  +....|   +.++..++..+..++|+.++++.||++|+
T Consensus       139 ~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~---~~~~--~~a~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~  208 (306)
T TIGR02056       139 FIAFIYS--APPLKLKQNGWLGNFALGASYIAL---PWWA--GHALFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSV  208 (306)
T ss_pred             HHHHHHc--CChhhhhhcccHHHHHHHHHHHHH---HHHH--HHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHccCh
Confidence            7789999  799999999988998876554432   2211  112233   24555556666677899999999999999


Q ss_pred             hhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHH
Q 047278          156 DGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAI  191 (252)
Q Consensus       156 ~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~  191 (252)
                      |+|+++|+||+|+++|+|++++++..+....+...+
T Consensus       209 e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~  244 (306)
T TIGR02056       209 EGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIA  244 (306)
T ss_pred             HHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998877666555443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.8e-30  Score=228.98  Aligned_cols=225  Identities=16%  Similarity=0.196  Sum_probs=163.7

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC-----CCCccccCccCHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK-----PDLPLASGDFSRGTGIAIALISSLTSLTMGV----MFRSPPLLLALI   72 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~-----~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~----~~~~~~~~~~~~   72 (252)
                      ++++++++|+++|.+|||+|+|.|+.|+     |+||+++|++|++|++....++..+++.++.    ..+.+.+.++ +
T Consensus        45 ~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~  123 (296)
T PRK05951         45 MLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-L  123 (296)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-H
Confidence            4689999999999999999965554444     7899999999999999988776665554432    2344444444 5


Q ss_pred             HHHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcC
Q 047278           73 IWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDV  152 (252)
Q Consensus        73 ~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (252)
                      .+.+.++.||  .||+++|++++ +++.+++.+|....+|.+.     ...+  ..++..+...+...+++.....+|++
T Consensus       124 ~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g~~~vlg~~~-----~~~~--~~~~~~~~~sl~~~l~~~~il~~n~~  193 (296)
T PRK05951        124 LGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWSHMLVMGLIY-----VWLG--NLSSPNLLAGVPLGLLMALVLLSNNL  193 (296)
T ss_pred             HHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHH-----HHhC--cccHHHHHHHHHHHHHHHHHHHHCCC
Confidence            6777889999  79999998876 8998888888544555432     1111  23445555555667788888999999


Q ss_pred             CCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHH
Q 047278          153 PDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNAST  232 (252)
Q Consensus       153 ~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~  232 (252)
                      ||+|+|+++|+||+|+++|+|++ ++...+...+|+..+........++...+..+++-....++.+++++.|.+++++|
T Consensus       194 ~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~  272 (296)
T PRK05951        194 RDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEAT  272 (296)
T ss_pred             ccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHH
Confidence            99999999999999999999999 66666666666665555555444543333344544445566677788888888888


Q ss_pred             HHHHHH
Q 047278          233 LSFYMF  238 (252)
Q Consensus       233 ~~f~~~  238 (252)
                      .+.+..
T Consensus       273 ~~~~~~  278 (296)
T PRK05951        273 VQLFML  278 (296)
T ss_pred             HHHHHH
Confidence            888775

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.98  E-value=1.3e-30  Score=226.46  Aligned_cols=173  Identities=21%  Similarity=0.252  Sum_probs=131.7

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHH----HHHHHHHHhcCHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSL----TSLTMGVMFRSPPLLLALIIWFLLG   78 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~----l~l~l~~~~~~~~~~~~~~~~~~l~   78 (252)
                      +..++..|.+.|++||++|+|+|++|+|+||+++|++|++++..+......    +++.+++..++.+..+. ..+.++.
T Consensus        53 ~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~  131 (292)
T PRK13595         53 LYLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALF  131 (292)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence            456777889999999999999999999999999999999999886443333    34556666676666655 4566788


Q ss_pred             HHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278           79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD  158 (252)
Q Consensus        79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D  158 (252)
                      +.||  .||+|+|++|++++++.. ..|.+.  ++    +....|..   +....+  ....+|+.++|++|++||+|+|
T Consensus       132 ~~YS--~pPlRlK~rp~l~~l~~~-~~g~p~--~~----~~~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~DiegD  197 (292)
T PRK13595        132 VGYS--LPPLRFKARPFLDGLSNA-AYALPL--AL----PALALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPAD  197 (292)
T ss_pred             HHHc--cCccchhcCcchhHHHHH-HHHHHH--HH----HHHHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHhH
Confidence            9999  799999999999888763 234321  11    12333421   122222  3456788999999999999999


Q ss_pred             HhcCcccchhhhchHHHHHHHHHHHHHHHHHH
Q 047278          159 RKFDIQTLSVIVGRERVFWLCVSMMLTAYGAA  190 (252)
Q Consensus       159 ~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~  190 (252)
                      |+.|+||+|+++|+|++.+++..+..++..++
T Consensus       198 r~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~  229 (292)
T PRK13595        198 RAAGTRTVATTLGVRGTALYALAWFLLAGALL  229 (292)
T ss_pred             HHcCCeechHHhCcHhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888776655443

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.97  E-value=9.2e-30  Score=222.76  Aligned_cols=209  Identities=22%  Similarity=0.321  Sum_probs=146.9

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYS   82 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Ys   82 (252)
                      +++.+++++++|++||++|+|+|++|+|+||+++|++|++++..+..++.++++.+++..|+.+..++ ..+...++.||
T Consensus        43 ~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~  121 (277)
T PRK12883         43 FLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYA  121 (277)
T ss_pred             HHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            45778889999999999999999999999999999999999999999999999988888887776665 45556788999


Q ss_pred             CCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcC
Q 047278           83 IQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFD  162 (252)
Q Consensus        83 ~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G  162 (252)
                      .     |+||+++++|++++...|..+..|+.     +. +.   .+...+.. ...++++...++.||+||+|+|+++|
T Consensus       122 ~-----~~k~~~~lg~~~vg~~~g~~~~~g~~-----a~-~~---~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G  186 (277)
T PRK12883        122 W-----KLKPLPFIGNVVVALLTGATPIYGAI-----AV-GR---IGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKG  186 (277)
T ss_pred             h-----cccCCcchhhHHHHHHHHHHHHHHHH-----Hh-cc---ccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcC
Confidence            5     47999888999988777743333332     11 21   23332222 23456677889999999999999999


Q ss_pred             cccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHH
Q 047278          163 IQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNAS  231 (252)
Q Consensus       163 ~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~  231 (252)
                      +||+|+++|+|+++++............. .......++.|...   ....+..+..+.+..+.+|+++
T Consensus       187 ~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~-l~~~~~~~~~y~~~---~~~~~~~l~~~~~~~~~~~~~~  251 (277)
T PRK12883        187 AKTLPIIIGKKRAAYIGAIFGVLTVIASF-LPVKAGIGLGYLPI---IIVDAIILYAAYLVLRNPDRET  251 (277)
T ss_pred             CcCcChHhcHHHHHHHHHHHHHHHHHHHH-HHHHHcccHHHHHH---HHHHHHHHHHHHHHHhCcchhH
Confidence            99999999999998876554333222211 12222224433221   1122334545555555555543

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.97  E-value=1.6e-29  Score=222.95  Aligned_cols=191  Identities=19%  Similarity=0.166  Sum_probs=149.2

Q ss_pred             ccHHHHHHHHHHHHhhhhcch--hhhhc--CCCCCccccCccCHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDV--EIDKV--NKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM----FRSPPLLLALII   73 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~--~~D~~--n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~----~~~~~~~~~~~~   73 (252)
                      ++++++++++++|.+|||+|+  |.|++  ++|+||+++|++|++|+...+..+.++++.++..    .+++...++ +.
T Consensus        43 ~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~  121 (293)
T PRK06080         43 ALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LL  121 (293)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence            367889999999999999999  56754  4589999999999999998877666655554433    344444444 45


Q ss_pred             HHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHH-HHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcC
Q 047278           74 WFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLL-FFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDV  152 (252)
Q Consensus        74 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (252)
                      +.+.++.||  .||.|+|++++ +|+..++.+|.....+ ++.     ..+   ..+++.++..+...+|+...+++||+
T Consensus       122 ~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~~~~~~~~~-----~~~---~~~~~~~~~~l~~~l~~~~~~~~n~~  190 (293)
T PRK06080        122 CIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLVIVLGTYYL-----QAG---TVDSAVFLPALPCGLLIGAVLLANNI  190 (293)
T ss_pred             HHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHHHHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            667789999  68988888876 8998887777543333 221     112   24556666667788899999999999


Q ss_pred             CCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 047278          153 PDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKL  204 (252)
Q Consensus       153 ~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~  204 (252)
                      +|+|+|+++|+||+|+++|+|+++++...+..++++..+.......+|+.+.
T Consensus       191 ~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  242 (293)
T PRK06080        191 RDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWGL  242 (293)
T ss_pred             CcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            9999999999999999999999999999999999988887777777777543

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=2.5e-29  Score=222.07  Aligned_cols=166  Identities=13%  Similarity=0.122  Sum_probs=131.5

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLG   78 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~   78 (252)
                      ++++..+.++++|++||++|+|+|++++  ++||+|+|++|+++|..++.++..+++.++.. .|..+..+..+..+...
T Consensus        52 ~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~  131 (306)
T PRK13362         52 AVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYV  131 (306)
T ss_pred             HHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3568889999999999999999999766  69999999999999999999888888876544 46555444422233356


Q ss_pred             HHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278           79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD  158 (252)
Q Consensus        79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D  158 (252)
                      ..||.     ++||+++.++++.++.++.++.+|+.     +..|.   .+...+++....++|+...+..++++|+|||
T Consensus       132 ~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~-----a~~g~---~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy  198 (306)
T PRK13362        132 GVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYC-----AVTGQ---FDAGALILLLMFSLWQMPHSYAIAIFRFNDY  198 (306)
T ss_pred             HHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHH-----HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence            78984     38999999999888776666556654     23332   3555666677788999999999999999999


Q ss_pred             HhcCcccchhhhchHHHHHHHH
Q 047278          159 RKFDIQTLSVIVGRERVFWLCV  180 (252)
Q Consensus       159 ~~~G~~Tl~v~~G~~~~~~l~~  180 (252)
                      +++|+||+|+++|+|++++...
T Consensus       199 ~~aG~~~lpv~~G~~~t~~~~~  220 (306)
T PRK13362        199 AAAGIPVLPVARGIAKTKLHIV  220 (306)
T ss_pred             HHCCCeeeceecChHHHHHHHH
Confidence            9999999999999998887544

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=3.2e-29  Score=220.54  Aligned_cols=215  Identities=12%  Similarity=0.125  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHHHhhhhcchhhhhcC---------C--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCH----HHH
Q 047278            4 VPAVLMNIYVVTLNQLYDVEIDKVN---------K--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSP----PLL   68 (252)
Q Consensus         4 ~~~~l~~~~~~~~Nd~~D~~~D~~n---------~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~----~~~   68 (252)
                      +++.++..++|++||++|+|.|++|         +  ++||+++|++|++|+..+..++.++++.++..++..    .+.
T Consensus        48 l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~  127 (297)
T PRK12871         48 LIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFV  127 (297)
T ss_pred             HHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556778999999999999865         2  589999999999999999998888888887665532    222


Q ss_pred             HHHHHHHHHHHHhcCCccccccccCCCch--hHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHH
Q 047278           69 LALIIWFLLGSAYSIQLPFLRWKGHPFLA--PFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFAN  146 (252)
Q Consensus        69 ~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~--~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  146 (252)
                      ++ +.+.++++.|+.      .||.+..+  +++.+..++.++..+ +     ...|.   .+...+....+.++|+.++
T Consensus       128 l~-~~~~~~~~~Y~~------~kr~~~~p~~~l~G~~~~~~~~~~g-~-----~~~g~---~~~~~~ll~~~~~~w~~~~  191 (297)
T PRK12871        128 IM-LYSYGIEAFYQV------KKRNQKYPVAQLLGRTDFTLFPAAG-Y-----LCYGQ---PDMTALLYMVFFYPWTMAH  191 (297)
T ss_pred             HH-HHHHHHHHHHhc------ccccccccHHHHHHHHHHHHHHHHH-H-----HHhCC---CcHHHHHHHHHHHHHHHHH
Confidence            22 455566778884      24443333  333333333322222 1     22332   3445555556778899999


Q ss_pred             HHhhcCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 047278          147 GLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDL  226 (252)
Q Consensus       147 ~~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~  226 (252)
                      +++||++|+|||++.|+||+|+++|+++++++...+..+....  ..+...+.++.+..  ....+.+.++.+|.+..+.
T Consensus       192 ~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~--~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~  267 (297)
T PRK12871        192 LGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLA--AIFFLRELGPIALY--GFLAGFVLLAGANLYLWKE  267 (297)
T ss_pred             HHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999998887655544444432  23445566643221  2234566788999999999


Q ss_pred             CchHHHHHHHHH
Q 047278          227 SSNASTLSFYMF  238 (252)
Q Consensus       227 ~~~~~~~~f~~~  238 (252)
                      +|+++|.+-|..
T Consensus       268 ~~~~~~~~~f~~  279 (297)
T PRK12871        268 KSQDAGMKILPL  279 (297)
T ss_pred             CCHHHHHHHHHH
Confidence            999999888763

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.97  E-value=5.1e-29  Score=214.67  Aligned_cols=218  Identities=27%  Similarity=0.407  Sum_probs=157.4

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhc--CCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKV--NKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA   80 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~--n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (252)
                      .++.++++.++|..||+.|+|+|+.  |+|+||+++|+++++++...+..+.++++.+++..++..+.+. ....+.++.
T Consensus        29 ~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~  107 (257)
T PF01040_consen   29 LLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLIL-LLGFLLGLL  107 (257)
T ss_pred             HHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHH
Confidence            4567799999999999999999999  7799999999999999999888999999988888787666665 455556789


Q ss_pred             hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278           81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK  160 (252)
Q Consensus        81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~  160 (252)
                      ||   ||+|+||+++.++++.++.++.....+++.      .++.  .+.+.........++.......+|++|+|+|++
T Consensus       108 Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~  176 (257)
T PF01040_consen  108 YS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD--PPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRK  176 (257)
T ss_pred             Hh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc--ccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            99   788999999999999988776544444432      2221  233444444444566777778889999999999


Q ss_pred             cCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278          161 FDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF  238 (252)
Q Consensus       161 ~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (252)
                      .|+||+|+++|+++++.  ..+....+.. .........++..   .......+..+....+..+.++++++++++++
T Consensus       177 ~g~~Tl~v~~G~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  248 (257)
T PF01040_consen  177 AGRRTLPVLLGEKKARY--LLLTAGLLLF-LLLLLGLFSPWPL---IIALLLAALALIFILWFFRKRDPKKPERLFFF  248 (257)
T ss_pred             cCCcchHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            99999999999999887  1111111111 0111111112211   12334455667777888888888888888844

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=5.2e-29  Score=218.77  Aligned_cols=191  Identities=25%  Similarity=0.314  Sum_probs=141.1

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLGSA   80 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~~~   80 (252)
                      +++++++.+.++|++||+.|+|+|++|+|+||.++++...+.+..+..+...+++.+... .++....+. +.+.+.++.
T Consensus        41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~  119 (285)
T PRK12872         41 LLLITFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILGIL  119 (285)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHH
Confidence            467899999999999999999999999999999866555555444444445555544333 355555554 456667899


Q ss_pred             hcCCcccc-ccccCCCchhHHHHHHHHHHHHH-HHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278           81 YSIQLPFL-RWKGHPFLAPFSMMILMGLVYQL-LFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD  158 (252)
Q Consensus        81 Ys~~~pp~-rlKr~~~~~~~~~~~~~g~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D  158 (252)
                      ||  .||. |+||.|.++|++++..+|..+.. +++.      .+.  ..+...+...+..+++.+..+.++|++|+|+|
T Consensus       120 Ys--~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~------~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D  189 (285)
T PRK12872        120 YS--VFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY------YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGD  189 (285)
T ss_pred             Hh--ChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh------ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhH
Confidence            99  4555 58999999999999888854333 3321      111  12344444445566778899999999999999


Q ss_pred             HhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278          159 RKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK  203 (252)
Q Consensus       159 ~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~  203 (252)
                      +++|+||+|+++|+|+++++...+..+.+...+........++.+
T Consensus       190 ~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (285)
T PRK12872        190 RKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLL  234 (285)
T ss_pred             HHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence            999999999999999999999988888888777666665556544

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=1.2e-27  Score=212.48  Aligned_cols=190  Identities=17%  Similarity=0.163  Sum_probs=145.5

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC----CCCccccCccCHHHHHHHHHHHHHHHHH----HHHHhcCHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK----PDLPLASGDFSRGTGIAIALISSLTSLT----MGVMFRSPPLLLALII   73 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~----~~Rpl~sG~is~~~a~~~~~~~~~l~l~----l~~~~~~~~~~~~~~~   73 (252)
                      +++++++.|.++|.+|||+|.+.|+.++    ++|++++|.+|+|+++..+..+..++..    +.+..++..+.++ ++
T Consensus        44 ~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~  122 (317)
T PRK13387         44 FMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LI  122 (317)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HH
Confidence            4678899999999999999987665554    7899999999999999887776666665    5555565555555 67


Q ss_pred             HHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHH-HHHHHHHhhccccccchHHH-------------------
Q 047278           74 WFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLF-FIHIQKYMLARPVVITKPLV-------------------  133 (252)
Q Consensus        74 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~-~~~~~~~~~g~~~~~~~~~~-------------------  133 (252)
                      +.+.++.||  .||+++||++ +||+.+++.+|.....+. +..  +   +   ..++..+                   
T Consensus       123 g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~yv~--t---~---~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (317)
T PRK13387        123 CFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAVYIN--T---N---TITIESLLFQGEMFTIQGNLIAIIAI  191 (317)
T ss_pred             HHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHHHHh--c---C---CCchHHHHhcccchhhcchhHHHHHH
Confidence            778899999  7999999999 599998888885443433 221  1   1   1121111                   


Q ss_pred             -HHHHHHHHHHHHHHHhhcCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278          134 -FATAFMCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK  203 (252)
Q Consensus       134 -~~~~~~~~~~~~~~~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~  203 (252)
                       +..+...+.+...+.+||++|+|+|+++|+||+|+++|+|++.++...+...+|+..+.......+|+.+
T Consensus       192 ~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~  262 (317)
T PRK13387        192 GVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWA  262 (317)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence             1344556667788999999999999999999999999999999999999999998877666666667654

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.96  E-value=5.7e-27  Score=205.08  Aligned_cols=190  Identities=15%  Similarity=0.096  Sum_probs=145.3

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhh--hhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHH----HHHhcC-----HHH-
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEI--DKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTM----GVMFRS-----PPL-   67 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~--D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l----~~~~~~-----~~~-   67 (252)
                      ++++++++|.++|.+|||+|.+.  |+.++  |+|++++|.+|++++...+..+..++..+    .+..++     +.+ 
T Consensus        33 ~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l  112 (284)
T TIGR00751        33 ALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFI  112 (284)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHH
Confidence            46889999999999999999853  65433  88999999999999998876666655444    333343     133 


Q ss_pred             HHHHHHHHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHH
Q 047278           68 LLALIIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANG  147 (252)
Q Consensus        68 ~~~~~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  147 (252)
                      .++ +.+++.++.||  .||+|+|++++ ||+.+++.+|.+...|.+.     ++.+  ..++..++..+...+.+..+.
T Consensus       113 ~lg-~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g~~y-----vq~~--~~~~~~ll~sl~~g~l~~~il  181 (284)
T TIGR00751       113 ALG-ALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLGTQY-----LQAH--RVDWVGILPAVATGLLACAVL  181 (284)
T ss_pred             HHH-HHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHHHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            333 56777889999  79999999997 8999988888554454332     1111  245555555555677788999


Q ss_pred             HhhcCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 047278          148 LLKDVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLS  202 (252)
Q Consensus       148 ~i~~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~  202 (252)
                      .+||++|+|+|+++|+||+|+++|+|+++++...+...+|+..+.......+|+.
T Consensus       182 ~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~  236 (284)
T TIGR00751       182 NINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWW  236 (284)
T ss_pred             HHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            9999999999999999999999999999999999998888877666665566653

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.96  E-value=1.3e-27  Score=208.70  Aligned_cols=183  Identities=24%  Similarity=0.225  Sum_probs=135.4

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY   81 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y   81 (252)
                      ..+.+.+...++|++||++|+|+|++|+|+||.+    +++.+..++.+..++|+.+++..|++  .++ +++.+.++.|
T Consensus        63 ~~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~-ll~~l~g~lY  135 (307)
T PRK13591         63 TCIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLA-FLPFITGYLY  135 (307)
T ss_pred             HHHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHH-HHHHHHHHHh
Confidence            3467788899999999999999999999999986    88899999999999999999887743  233 4666778999


Q ss_pred             cCC----ccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 047278           82 SIQ----LPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDG  157 (252)
Q Consensus        82 s~~----~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~  157 (252)
                      |.+    ..|+|+|+.+.++|++++..+|.....+    .+.. .+   . ..+.....++...-.++++.+||++|+|+
T Consensus       136 S~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~----~g~~-~~---~-~~~~~~i~l~~~~~l~~~~iindirDiEG  206 (307)
T PRK13591        136 SKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI----AGSY-CG---S-LIPVGLIFLFFGVKLFINSCVYDFKDVKG  206 (307)
T ss_pred             cCCCCCCCccccccCCCchhHHHHHHHHHHHHHHH----HHhh-hh---h-HHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence            953    2245899999999999998888532111    0111 11   0 11111111111222356778999999999


Q ss_pred             hHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047278          158 DRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFP  200 (252)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~  200 (252)
                      |++.|+||+|+++|+++++++...+..++++..+.......++
T Consensus       207 Dr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~  249 (307)
T PRK13591        207 DTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIA  249 (307)
T ss_pred             HHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999888888887766555554444

>PLN02776 prenyltransferase

Probab=99.96  E-value=8.1e-27  Score=207.07  Aligned_cols=218  Identities=14%  Similarity=0.046  Sum_probs=154.1

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTM-GVMFRSPPLLLALIIWFLLG   78 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l-~~~~~~~~~~~~~~~~~~l~   78 (252)
                      ++++++++++++|++||++|+|+|++|+  ++||+|+|++|+++|+.+++++.++++.+ .+..|+.+..++....++..
T Consensus        34 ~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~  113 (341)
T PLN02776         34 TCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYA  113 (341)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999977  79999999999999999999988888855 45567777766633233345


Q ss_pred             HHhcCCccccccccCCCchhHHHHHHHH-HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 047278           79 SAYSIQLPFLRWKGHPFLAPFSMMILMG-LVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDG  157 (252)
Q Consensus        79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g-~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~  157 (252)
                      ..||.      +||+++++ .++|.+.| +++.+||.     ++.|.   +++..+++....++|+...+....++|+||
T Consensus       114 ~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~-----Avtg~---~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dD  178 (341)
T PLN02776        114 FVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWA-----AASGQ---LDAGAMVLAAALYFWQMPHFMALAYMCRDD  178 (341)
T ss_pred             HHHHh------HccCCchh-HHHHHHHHHHHHHHHHH-----HHcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            68995      79999876 46666656 55555553     34442   456667777778899997777778888899


Q ss_pred             hHhcCcccchhhh--chHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHH
Q 047278          158 DRKFDIQTLSVIV--GRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSF  235 (252)
Q Consensus       158 D~~~G~~Tl~v~~--G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f  235 (252)
                      |+++|++++|+.-  |+++++.+....+.+..+.++..+... .++.|  ...+..+....+.++++..+.+|.+..++.
T Consensus       179 y~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~-~~~~~--~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~  255 (341)
T PLN02776        179 YAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGV-TSSPF--ALEAALLTAYLAASAASFYREPTNANARKM  255 (341)
T ss_pred             HHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHH--HHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            9999999999965  566566555444433333332222222 22222  133455555678888888877777666554


Q ss_pred             HH
Q 047278          236 YM  237 (252)
Q Consensus       236 ~~  237 (252)
                      |.
T Consensus       256 F~  257 (341)
T PLN02776        256 FH  257 (341)
T ss_pred             HH
Confidence            44

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=2.8e-26  Score=199.92  Aligned_cols=179  Identities=20%  Similarity=0.195  Sum_probs=125.7

Q ss_pred             cHHHHHHHHHHHHh----hhhcchhhhhcCCCCCccccCccCHHHHHHHH----HHHHH-HHHHHHHHhcCHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTL----NQLYDVEIDKVNKPDLPLASGDFSRGTGIAIA----LISSL-TSLTMGVMFRSPPLLLALII   73 (252)
Q Consensus         3 l~~~~l~~~~~~~~----Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~----~~~~~-l~l~l~~~~~~~~~~~~~~~   73 (252)
                      ++.+++++...|..    |||+|+|.|+.|++++.. .|.+|++|.....    .+... .++.+....+++.+.++ .+
T Consensus        36 l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~  113 (282)
T PRK13105         36 VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AV  113 (282)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HH
Confidence            44566666666555    999999999999855443 5889999884433    22222 22223332244344444 57


Q ss_pred             HHHHHHHhcCCccccccccCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcC
Q 047278           74 WFLLGSAYSIQLPFLRWKGHPFLAPFSMMIL-MGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDV  152 (252)
Q Consensus        74 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~-~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  152 (252)
                      +++.++.||  .||.|+|++++.++++..+. +|. ...|.+     .. ++  ..++..++....+.+|+.+++++||+
T Consensus       114 ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~-~v~G~~-----~~-~~--~~~~~~~l~~~~~~~~~~a~~ii~~i  182 (282)
T PRK13105        114 SVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSP-ALYGLV-----LA-GA--PFTAALWAVLAAFFLWGMASHAFGAV  182 (282)
T ss_pred             HHHHHHHhc--CCCccccccchHHHHHHHHHHHHH-HHHHHH-----Hh-hc--cccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            778889999  69999999999888654332 222 222321     22 22  23445556666778899999999999


Q ss_pred             CCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 047278          153 PDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVG  194 (252)
Q Consensus       153 ~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g  194 (252)
                      ||+|+||+.|+||+|+++|+|++.+++..++.+++++.+..+
T Consensus       183 rDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        183 QDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             cchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887776444

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.94  E-value=3.3e-25  Score=194.07  Aligned_cols=187  Identities=14%  Similarity=0.096  Sum_probs=139.3

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhh--hhcCC--CCCccccCccCHHHHHHHHHHHHHHHHH----HHHHhcCHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEI--DKVNK--PDLPLASGDFSRGTGIAIALISSLTSLT----MGVMFRSPPLLLALII   73 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~--D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~----l~~~~~~~~~~~~~~~   73 (252)
                      +++++++.|.++|.+|||+|.+.  |+.+.  +.|..    .++++......++..++..    +.+..+++.+.++ ..
T Consensus        40 ~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~----~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~  114 (285)
T TIGR02235        40 FLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLT----GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GL  114 (285)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhcCCCccccCCccccc----CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HH
Confidence            46899999999999999999864  77432  33333    4567776665555444443    3344453334444 56


Q ss_pred             HHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCC
Q 047278           74 WFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVP  153 (252)
Q Consensus        74 ~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  153 (252)
                      +++.++.||  .||+++|++++ |++.+++.+|.....+.+.     ++.+  .+++..+...+...+.+.....+||++
T Consensus       115 g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~y-----vqt~--~~~~~~~l~sl~~gl~~~~iL~~Nn~r  184 (285)
T TIGR02235       115 CCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAALY-----AQSQ--SFSLIPWKASILVGLATTLILFCSHFH  184 (285)
T ss_pred             HHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHHH-----HhCC--cCcHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            778899999  79999999998 9999988888544444321     1111  356666666667778888999999999


Q ss_pred             CchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278          154 DVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK  203 (252)
Q Consensus       154 D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~  203 (252)
                      |+|+|+++|+||+|+++|+|++.++...+...+|+..+........|+..
T Consensus       185 D~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~  234 (285)
T TIGR02235       185 QVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTT  234 (285)
T ss_pred             cchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999998877777666666643

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=1.7e-25  Score=193.91  Aligned_cols=171  Identities=15%  Similarity=0.171  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHhhhhcchhhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---
Q 047278            5 PAVLMNIYVVTLNQLYDVEIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAY---   81 (252)
Q Consensus         5 ~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Y---   81 (252)
                      ..++..++++++||++|+|+||+|+|+||+|||++|++++..++.++.++++.++...     ... +...+..+.|   
T Consensus        54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~~i~~lY~~l  127 (299)
T PRK13592         54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWFLFLYIYGTL  127 (299)
T ss_pred             HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHH
Confidence            3455688999999999999999999999999999999999999988877777666543     112 1233345566   


Q ss_pred             --cCCccccccccCCCchhHHHHHHHHHHHHH--HHHHH-HHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCch
Q 047278           82 --SIQLPFLRWKGHPFLAPFSMMILMGLVYQL--LFFIH-IQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVD  156 (252)
Q Consensus        82 --s~~~pp~rlKr~~~~~~~~~~~~~g~~~~~--g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~  156 (252)
                        +.     ++||.++.+|+.++...|.++..  +++.. .+....|.+ ......+.+.+..++.+.++|+.+|++| |
T Consensus       128 m~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD-~  200 (299)
T PRK13592        128 MSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA-P  200 (299)
T ss_pred             HHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC-C
Confidence              64     48999999999998776643322  22211 011122211 1111112333344556789999999999 8


Q ss_pred             hhHhcCcccchhhhchHHHHHHHHHHHHHHHHH
Q 047278          157 GDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGA  189 (252)
Q Consensus       157 ~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~  189 (252)
                      ||++. .+|+|+++|.|++.+++..+..+..+.
T Consensus       201 gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        201 KDETE-YVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             ccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence            88865 999999999999999988776655543

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.94  E-value=1.2e-24  Score=191.96  Aligned_cols=189  Identities=16%  Similarity=0.093  Sum_probs=142.5

Q ss_pred             ccHHHHHHHHHHHHhhhhcchh--hhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVE--IDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTM----GVMFRSPPLLLALIIWF   75 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l----~~~~~~~~~~~~~~~~~   75 (252)
                      ++++++++|.++|.+|||+|++  .|+. +++ ...++..++++.......+.+++..+    .+..+++.+.++ ++++
T Consensus        53 ~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~  129 (304)
T PRK07419         53 FLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCC  129 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHH
Confidence            4689999999999999999987  6774 222 23355557888887766665555543    344454444444 5677


Q ss_pred             HHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCc
Q 047278           76 LLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDV  155 (252)
Q Consensus        76 ~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~  155 (252)
                      +.+++||  .||+|+|++++ |++.+++.+|.....+.+.     +..+  .+++..+...+...+.+.....+||++|+
T Consensus       130 ~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~y-----v~t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~  199 (304)
T PRK07419        130 FLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAALY-----SQTP--SWSLIPLAASIILGLATSLILFCSHFHQV  199 (304)
T ss_pred             HHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHH-----HhcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            8899999  79999999997 9999988888554444331     1111  24555666666677888899999999999


Q ss_pred             hhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278          156 DGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK  203 (252)
Q Consensus       156 ~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~  203 (252)
                      |+|+++|+||+|+++|+|+++++...+...+|+..+.......+|+..
T Consensus       200 e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~  247 (304)
T PRK07419        200 EDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTT  247 (304)
T ss_pred             hhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999999998877777766666643

>PLN02922 prenyltransferase

Probab=99.94  E-value=3.6e-24  Score=189.83  Aligned_cols=194  Identities=20%  Similarity=0.193  Sum_probs=140.8

Q ss_pred             ccHHHHHHHHHHHHhhhhcchh--hhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVE--IDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTMGVM-----FRSPPLLLALIIW   74 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-----~~~~~~~~~~~~~   74 (252)
                      +++++++.|.++|.+|||+|.+  .|+.++..+.-..|  |+++.+.....+.+++....+.     .+++.+.++ +.+
T Consensus        56 ~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g  132 (315)
T PLN02922         56 LLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAA  132 (315)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHH
Confidence            4789999999999999999976  57654322122234  9999988776666555532221     133334444 678


Q ss_pred             HHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccc----cccchHHHHHHHHHHHHHHHHHHhh
Q 047278           75 FLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARP----VVITKPLVFATAFMCVLSFANGLLK  150 (252)
Q Consensus        75 ~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~i~  150 (252)
                      ++.+++||  .||+|+|++++ |++.+++.+|.....+.+.. ++...+..    .+.++..++..+...+++.....+|
T Consensus       133 ~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~N  208 (315)
T PLN02922        133 ILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCS  208 (315)
T ss_pred             HHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHc
Confidence            88899999  79999999998 89988888885544554321 11111100    0134455566677788899999999


Q ss_pred             cCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 047278          151 DVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLS  202 (252)
Q Consensus       151 ~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~  202 (252)
                      |++|+|+|+++|+||+|+++|+|+++++...+...+|+..+........|+.
T Consensus       209 n~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~  260 (315)
T PLN02922        209 HFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLP  260 (315)
T ss_pred             cCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            9999999999999999999999999999999999999888777777666653

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=8.3e-24  Score=184.79  Aligned_cols=169  Identities=20%  Similarity=0.334  Sum_probs=108.8

Q ss_pred             HHHHHHHhhhhcchhhhhcCCCCCc---cccCccCHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 047278            9 MNIYVVTLNQLYDVEIDKVNKPDLP---LASGDFSRGTGIAI-ALISSLTSLTMGVMFRSPPLLLALIIWFLLGSAYSIQ   84 (252)
Q Consensus         9 ~~~~~~~~Nd~~D~~~D~~n~~~Rp---l~sG~is~~~a~~~-~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~Ys~~   84 (252)
                      .|.+.|++||++|+|+||.|+++|.   ++   .+.+.+... ......+++.+....++...... +..++..+.||  
T Consensus        57 ~Nl~~y~iND~~D~D~Dr~~prk~~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS--  130 (282)
T PRK12875         57 ANVFLYGVNDVFDADTDELNPKKDREREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYS--  130 (282)
T ss_pred             HHHHHhcchhhhhhhccccCCCccCCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHc--
Confidence            3456677899999999999986543   33   111222111 22233334433333333222222 45567889999  


Q ss_pred             ccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHhcCcc
Q 047278           85 LPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRKFDIQ  164 (252)
Q Consensus        85 ~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~~G~~  164 (252)
                      .||+|+|++|+.+..+.+... .++..+++     ...|   +.++..+  .+..++|+.+++++|++||+|+|+++|+|
T Consensus       131 ~pP~rlk~~p~~~~~~~g~~~-~~~~~~y~-----~~tg---~~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~  199 (282)
T PRK12875        131 APPLRFKTTPVLDSLSNGLYI-LPGVAAYA-----LVSG---SLPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIR  199 (282)
T ss_pred             CCCccchhccHHHHHHHHHHH-HHHHHHHH-----HHcC---CCcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCc
Confidence            799999999986544433211 12222222     1222   1343333  23356899999999999999999999999


Q ss_pred             cchhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 047278          165 TLSVIVGRERVFWLCVSMMLTAYGAAILVG  194 (252)
Q Consensus       165 Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g  194 (252)
                      |+|+++|+|++++++..++.++..+.+..+
T Consensus       200 Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        200 TTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             cchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888888777766655

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.91  E-value=1.9e-22  Score=174.72  Aligned_cols=190  Identities=19%  Similarity=0.239  Sum_probs=141.2

Q ss_pred             ccHHHHHHHHHHHHhhhhcchh--hhhc----CCCCCccccCccCHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVE--IDKV----NKPDLPLASGDFSRGTGIAIALISSLTSLTMGV----MFRSPPLLLAL   71 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~--~D~~----n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~----~~~~~~~~~~~   71 (252)
                      .++++++++..+|..|||.|.+  .|.+    .+.++.+.+.+++++..+...+.+...+..++.    ..++.-+.++ 
T Consensus        49 ~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-  127 (303)
T COG1575          49 ALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-  127 (303)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-
Confidence            3689999999999999999976  5643    224556666677888887766555554444433    3344323334 


Q ss_pred             HHHHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHH-HHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhh
Q 047278           72 IIWFLLGSAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLL-FFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLK  150 (252)
Q Consensus        72 ~~~~~l~~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~  150 (252)
                      .++++.++.|+  .+|+++++.|+ |++..++++|.....+ +|..      .+  ..++..++..+...+.+......|
T Consensus       128 ~l~~~~g~~YT--gGp~PlgY~gL-GEi~~~vffG~l~v~g~~yiq------t~--~~~~~~ll~slp~gil~~~Il~aN  196 (303)
T COG1575         128 LLCIAAGILYT--GGPFPLGYMGL-GEIFVGVFFGPLIVLGAYYIQ------TG--RLSWAILLPSLPVGILIANILLAN  196 (303)
T ss_pred             HHHHHheeeec--cCCcCcccCCH-HHHHHHHHHHHHHHHHHHHHh------cc--cchHHHHHHHHHHHHHHHHHHHhc
Confidence            67888899999  68999999987 9999988888543333 3321      11  246666666667777788899999


Q ss_pred             cCCCchhhHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 047278          151 DVPDVDGDRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSK  203 (252)
Q Consensus       151 ~~~D~~~D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~  203 (252)
                      +++|+|+|+|+|++|+|+++|+++++.+...++..+|++.++.......++..
T Consensus       197 NirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~  249 (303)
T COG1575         197 NLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWG  249 (303)
T ss_pred             ccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            99999999999999999999999999999999999988877666666666544

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=6.6e-23  Score=177.21  Aligned_cols=222  Identities=15%  Similarity=0.107  Sum_probs=147.1

Q ss_pred             ccHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Q 047278            2 ALVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMG-VMFRSPPLLLALIIWFLLG   78 (252)
Q Consensus         2 ~l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~l~   78 (252)
                      +++|..+..+++|++|+++|||+|++++  ++||+++|+++++|++.++.++.++|+.+. +..|+..-.+.+..-+...
T Consensus        57 ~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv  136 (304)
T COG0109          57 TLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYV  136 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678899999999999999999999988  799999999999999999999999999888 5556555555533444567


Q ss_pred             HHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhh
Q 047278           79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGD  158 (252)
Q Consensus        79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D  158 (252)
                      .+||.+     +||++....++.++.+++++.+||.     ++.|.   .+...+++.+.+++|+-..--.-++.-+||-
T Consensus       137 ~vYT~~-----lKR~T~~NiviGg~aGa~PpliGwa-----Avtg~---~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY  203 (304)
T COG0109         137 VVYTLW-----LKRRTPQNIVIGGFAGAMPPLIGWA-----AVTGS---ISLGAILLFAIIFLWTPPHFWALALKYKDDY  203 (304)
T ss_pred             hhhhhh-----ccCCcccceeeeeccccccccceee-----eeeCC---CCchHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            899985     8999986544445554456666663     45553   4555555555566775432222233445666


Q ss_pred             HhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH
Q 047278          159 RKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFPLSKLVTVICHSILAFILWLRAKTVDLSSNASTLSFYMF  238 (252)
Q Consensus       159 ~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~d~~~~~~~~~f~~~  238 (252)
                      +++|+..+|+.-|++.+++-...-..+..............++.|..  .+.++-+..+++-.+...-+|++..++-|.+
T Consensus       204 ~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v--~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~  281 (304)
T COG0109         204 KAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLV--VATLLGAWFLALAWKLYRKDDRKWARKLFKY  281 (304)
T ss_pred             HHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH--HHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            89999999999999988765322222222111222222223344422  2333333445555555444788888777764

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.77  E-value=6.5e-17  Score=142.04  Aligned_cols=98  Identities=27%  Similarity=0.403  Sum_probs=81.4

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcC--CCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVN--KPDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA   80 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n--~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (252)
                      .++..++++++|++||++|+|+||+|  ||+||++||++|++++..++.++..+++.+++..|+...... ...+++.+.
T Consensus        52 fl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~  130 (295)
T PRK12324         52 FVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLA  130 (295)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            34556788999999999999999998  489999999999999999999999999988888776555544 455667789


Q ss_pred             hcCCccccccccCCCchhHHHHHHHH
Q 047278           81 YSIQLPFLRWKGHPFLAPFSMMILMG  106 (252)
Q Consensus        81 Ys~~~pp~rlKr~~~~~~~~~~~~~g  106 (252)
                      ||.     ++||++..++++++...+
T Consensus       131 Ys~-----~lK~~~~~d~l~va~~~~  151 (295)
T PRK12324        131 YSF-----KLKHQPVLDVFCIASGFV  151 (295)
T ss_pred             hhH-----HhcCCchhhHHHHHHHHH
Confidence            996     489999999888866544

>PRK08238 hypothetical protein; Validated

Probab=99.75  E-value=2.5e-16  Score=147.06  Aligned_cols=144  Identities=21%  Similarity=0.270  Sum_probs=106.3

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFRSPPLLLALIIWFLLGSA   80 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (252)
                      .++..++++++|++||+.|+|+||+|+  |+||++||++|+++|..++.+++.+++.+++.+|+...... +..+++..+
T Consensus       232 f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~-~~~~~~~~~  310 (479)
T PRK08238        232 FLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVL-LAYLALTLA  310 (479)
T ss_pred             HHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence            456778999999999999999999995  89999999999999999999999999999888876444333 456667788


Q ss_pred             hcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchhhHh
Q 047278           81 YSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDGDRK  160 (252)
Q Consensus        81 Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~D~~  160 (252)
                      ||.     ++||+++++++++++.++..+..|+      ...+    .+.+.+++. +..+......+.|...|.+.+++
T Consensus       311 Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~------~a~~----~~~s~wll~-~~~~~~l~la~~KR~~El~~~~~  374 (479)
T PRK08238        311 YSL-----RLKRKVLVDVLTLAALYTLRIIAGA------AAIG----VALSFWLLA-FSMFFFLSLALVKRYTELRRALQ  374 (479)
T ss_pred             hhH-----HhcCCccccchHHHHHHHHHHHHHH------HHhc----cCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHh
Confidence            995     4899999999999765543333332      2222    223333322 22233455667888888888877


Q ss_pred             cCc
Q 047278          161 FDI  163 (252)
Q Consensus       161 ~G~  163 (252)
                      .|.
T Consensus       375 ~~~  377 (479)
T PRK08238        375 RGK  377 (479)
T ss_pred             cCC
Confidence            775

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.16  E-value=4.4e-11  Score=103.81  Aligned_cols=169  Identities=14%  Similarity=0.170  Sum_probs=110.6

Q ss_pred             cHHHHHHHHHHHHhhhhcchhhhhcCC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHH
Q 047278            3 LVPAVLMNIYVVTLNQLYDVEIDKVNK--PDLPLASGDFSRGTGIAIALISSLTSLTMGVM-FRSPPLLLALIIWFLLGS   79 (252)
Q Consensus         3 l~~~~l~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~l~~   79 (252)
                      -+|+.+..+++|++||+++...|++++  ++||+++|++|+.+|+.++.+....|..+... .|+..-.++..--++...
T Consensus       133 tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~  212 (409)
T KOG1380|consen  133 TVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAG  212 (409)
T ss_pred             hhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeec
Confidence            467888999999999999999999987  89999999999999999998888888766655 455444444222234466


Q ss_pred             HhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH--HHHHhhcCCCchh
Q 047278           80 AYSIQLPFLRWKGHPFLAPFSMMILMGLVYQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSF--ANGLLKDVPDVDG  157 (252)
Q Consensus        80 ~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~D~~~  157 (252)
                      +|+-      +||.......+.++++.+++.+||-     +..|.   .++..+++......|.+  ...+-.+++  +|
T Consensus       213 vYTP------lKrihiinTWvGavVGAIPPLMGwA-----Aasg~---l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~D  276 (409)
T KOG1380|consen  213 VYTP------LKRIHIINTWVGAVVGAIPPLMGWA-----AASGL---LDPGAMILAGILYAWQFPHFNALSWNLR--ND  276 (409)
T ss_pred             cccc------hhhhhhhhhHHHHHhccCCccchhh-----hhccC---CCccHHHHHHHHHHhcccchhhhhhhhc--hh
Confidence            7873      8998764444444443355556663     22232   23344444444445654  333444443  45


Q ss_pred             hHhcCcccchhhh---chHHHHHHHHHHHHHHH
Q 047278          158 DRKFDIQTLSVIV---GRERVFWLCVSMMLTAY  187 (252)
Q Consensus       158 D~~~G~~Tl~v~~---G~~~~~~l~~~l~~~~~  187 (252)
                      ..+.|.+.+++.-   -++.+.+.+..++.++|
T Consensus       277 Ys~~GY~Mma~~np~l~rr~alr~s~a~~~L~~  309 (409)
T KOG1380|consen  277 YSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY  309 (409)
T ss_pred             hhhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence            6899999999864   23445555555555554

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=98.76  E-value=1.6e-09  Score=90.18  Aligned_cols=182  Identities=15%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhhhhcch--hhhhcCCCCCccccCccCHHHHHHHHHHHHHHHHHH---HHHhcCH---HHHHHHHHHHHHH
Q 047278            7 VLMNIYVVTLNQLYDV--EIDKVNKPDLPLASGDFSRGTGIAIALISSLTSLTM---GVMFRSP---PLLLALIIWFLLG   78 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~--~~D~~n~~~Rpl~sG~is~~~a~~~~~~~~~l~l~l---~~~~~~~---~~~~~~~~~~~l~   78 (252)
                      +..+.++|.+|.|+|.  .+|++...+|.++..-+.+.+...+..++...+-..   ...+++.   -+.+.-..++--.
T Consensus       109 lavh~agnlvntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~s  188 (359)
T KOG4581|consen  109 LAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGS  188 (359)
T ss_pred             eeeecccchhhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccc
Confidence            3457788999999995  588887789999998888888877776665544332   2223321   1111112233345


Q ss_pred             HHhcCCccccccccCCCchhHHHHHHHHHH-HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHhhcCCCchh
Q 047278           79 SAYSIQLPFLRWKGHPFLAPFSMMILMGLV-YQLLFFIHIQKYMLARPVVITKPLVFATAFMCVLSFANGLLKDVPDVDG  157 (252)
Q Consensus        79 ~~Ys~~~pp~rlKr~~~~~~~~~~~~~g~~-~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~D~~~  157 (252)
                      +.|+.+   +.+|.... +.+++.+.+|.+ +..++..     -.|.   +.+..+-..+...+-+-++..-|+.+|.|.
T Consensus       189 flytgg---igfkyial-gdliili~fgpiavlfaf~~-----q~g~---l~~~~l~yaiplalnteailhsnntrd~dn  256 (359)
T KOG4581|consen  189 FLYTGG---IGFKYIAL-GDLIILILFGPIAVLFAFAI-----QTGH---LAIFPLGYAIPLALNTEAILHSNNTRDADN  256 (359)
T ss_pred             eeEecc---cceEEEec-cCEEEEEeechHHHHHHHHH-----hcCc---eeEEeehheeeeccchHHHhccCCCccccc
Confidence            678853   45777665 555544444521 1222211     1121   111111111122233446667899999999


Q ss_pred             hHhcCcccchhhhchHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 047278          158 DRKFDIQTLSVIVGRERVFWLCVSMMLTAYGAAILVGASSSFP  200 (252)
Q Consensus       158 D~~~G~~Tl~v~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~~~  200 (252)
                      ||++|+-|+++.+|+..+-.++..++.+.|.+..+.+.-.+..
T Consensus       257 dr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~  299 (359)
T KOG4581|consen  257 DREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSIS  299 (359)
T ss_pred             ccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888888888998877777655543

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=94.95  E-value=0.081  Score=46.73  Aligned_cols=30  Identities=23%  Similarity=0.201  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhhhhcchhhhhcCCCCCcc
Q 047278            5 PAVLMNIYVVTLNQLYDVEIDKVNKPDLPL   34 (252)
Q Consensus         5 ~~~l~~~~~~~~Nd~~D~~~D~~n~~~Rpl   34 (252)
                      .+.+..+.++..|++.|.|+|++|.|+.+.
T Consensus       184 p~gil~~~Il~aNNirDie~D~~~gk~TLa  213 (303)
T COG1575         184 PVGILIANILLANNLRDIEEDIRNGKYTLA  213 (303)
T ss_pred             HHHHHHHHHHHhcccccchhHHhcCCccee
Confidence            455667788889999999999999865543

>PRK13591 ubiA prenyltransferase; Provisional

Probab=93.60  E-value=0.32  Score=43.28  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=37.2

Q ss_pred             HhhhhcchhhhhcCC-CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcC
Q 047278           15 TLNQLYDVEIDKVNK-PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFR-----SPPLLLALIIWFLLGSAYSI   83 (252)
Q Consensus        15 ~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~-----~~~~~~~~~~~~~l~~~Ys~   83 (252)
                      .+||+.|.|.|+++. +.-|+.=|+=..+.......+...+...+....+     +.....+++.++...+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            689999999999986 5666655633222222211111112222222222     33344455666777788985

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=92.60  E-value=0.64  Score=40.65  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278            7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      ++.....+.+||+.|+|.|+++. +.-|..-|+
T Consensus       171 fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        171 FLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            34556666889999999999876 666776665

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=92.54  E-value=2  Score=37.82  Aligned_cols=51  Identities=14%  Similarity=0.093  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHhhhhcchhhhhcCC-CCCccccCccCHHHHHHHHHHHHHHHHH
Q 047278            4 VPAVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFSRGTGIAIALISSLTSLT   57 (252)
Q Consensus         4 ~~~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~~~~l~l~   57 (252)
                      ++..+...+...+||+.|+|.|++.. +.-|..   +.++.+..+...+..++..
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~---lG~~~a~~~~~~~~~~a~~  223 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATV---LGERRTYAYCAACWLLAAA  223 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchhh---ccHhhHHHHHHHHHHHHHH
Confidence            45556667778899999999999865 554543   3455555554444444433

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=91.83  E-value=0.91  Score=40.38  Aligned_cols=23  Identities=17%  Similarity=0.145  Sum_probs=19.1

Q ss_pred             HHHHHHHHhhhhcchhhhhcCCC
Q 047278            8 LMNIYVVTLNQLYDVEIDKVNKP   30 (252)
Q Consensus         8 l~~~~~~~~Nd~~D~~~D~~n~~   30 (252)
                      +........||+.|+|.||++.+
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk  207 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGK  207 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCC
Confidence            44567778999999999999874

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=91.50  E-value=0.81  Score=40.95  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=25.0

Q ss_pred             HHHHHHHHHhhhhcchhhhhcCCC-CCccccCccCHHHHHHH
Q 047278            7 VLMNIYVVTLNQLYDVEIDKVNKP-DLPLASGDFSRGTGIAI   47 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~   47 (252)
                      .+........||+.|+|.|+.+.+ +-|..=|   ++.+...
T Consensus       199 g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG---~~~a~~l  237 (317)
T PRK13387        199 IFTIANIMLANNLRDLDEDIKNHRYTLVYYIG---REKGVVL  237 (317)
T ss_pred             HHHHHHHHHhcCCccchhHHHcCCeeeeeeEc---HHhHHHH
Confidence            344566678999999999999864 3344334   4444443

>PLN02922 prenyltransferase

Probab=90.68  E-value=1  Score=40.21  Aligned_cols=25  Identities=8%  Similarity=0.081  Sum_probs=20.4

Q ss_pred             HHHHHHHHHhhhhcchhhhhcCCCC
Q 047278            7 VLMNIYVVTLNQLYDVEIDKVNKPD   31 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~~~D~~n~~~   31 (252)
                      .+.....+..||+.|+|.|+++.++
T Consensus       198 gll~~~iL~~Nn~rD~e~D~~~Gk~  222 (315)
T PLN02922        198 GLTTTLILFCSHFHQIDGDRAVGKM  222 (315)
T ss_pred             HHHHHHHHHHccCcchhhHHHcCcc
Confidence            3556677889999999999998743

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=90.50  E-value=1.7  Score=38.06  Aligned_cols=35  Identities=23%  Similarity=0.144  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhhhhcchhhhhcCC-CCCccccCccC
Q 047278            6 AVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFS   40 (252)
Q Consensus         6 ~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is   40 (252)
                      .++-+..-..+|++.|+|.|++.. |.-|..-|+-+
T Consensus       169 ~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~  204 (281)
T TIGR01474       169 NILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT  204 (281)
T ss_pred             HHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence            344455556789999999999876 77787777533

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13592 ubiA prenyltransferase; Provisional

Probab=90.41  E-value=2.7  Score=37.19  Aligned_cols=43  Identities=9%  Similarity=0.098  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHhhcCCCchhhHhcCcccchhhh---chHHHHHHHHHH
Q 047278          139 MCVLSFANGLLKDVPDVDGDRKFDIQTLSVIV---GRERVFWLCVSM  182 (252)
Q Consensus       139 ~~~~~~~~~~i~~~~D~~~D~~~G~~Tl~v~~---G~~~~~~l~~~l  182 (252)
                      .++.+.+-.++||+.|+|-|+.+ ++.=|+-=   .+|.++..+..+
T Consensus        55 vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L  100 (299)
T PRK13592         55 VFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFI  100 (299)
T ss_pred             HHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHH
Confidence            33445677899999999999665 55555533   345555544333

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=89.96  E-value=4  Score=35.80  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhhcCCCchhhHhcCc-ccchhhhch
Q 047278          139 MCVLSFANGLLKDVPDVDGDRKFDI-QTLSVIVGR  172 (252)
Q Consensus       139 ~~~~~~~~~~i~~~~D~~~D~~~G~-~Tl~v~~G~  172 (252)
                      .++...+...+||+.|+|-|+++-. |.=|.-=|+
T Consensus        56 ~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~   90 (289)
T COG0382          56 FFLARSAGYVINDLADREIDRINPRTKNRPLPSGR   90 (289)
T ss_pred             HHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence            3445567789999999999998866 355555554

>PLN00012 chlorophyll synthetase; Provisional

Probab=89.94  E-value=1.8  Score=39.64  Aligned_cols=31  Identities=23%  Similarity=0.360  Sum_probs=24.3

Q ss_pred             HHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278            8 LMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus         8 l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      +...+....||+.|+|.|++.. +.-|..-|+
T Consensus       263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            4556677899999999999875 777776664

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=89.85  E-value=1.9  Score=37.95  Aligned_cols=53  Identities=9%  Similarity=0.091  Sum_probs=35.1

Q ss_pred             HHHHHHHHhhhhcchhhhhcCC-CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc
Q 047278            8 LMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFSRGTGIAIALISSLTSLTMGVMFR   63 (252)
Q Consensus         8 l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~~~~l~l~l~~~~~   63 (252)
                      +...+...+||+.|.|.||++. +.-|.   ++.++.+..+...+..++.......+
T Consensus       171 ~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        171 LWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777899999999999875 44343   45567777766666555554443333

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=89.63  E-value=2  Score=37.50  Aligned_cols=33  Identities=24%  Similarity=0.129  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhhcCCCchhhHhcCcccchhhhch
Q 047278          139 MCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVGR  172 (252)
Q Consensus       139 ~~~~~~~~~~i~~~~D~~~D~~~G~~Tl~v~~G~  172 (252)
                      ..+...+-..+||+.|+|.|++. +++=|..-|+
T Consensus        46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            33445566789999999999988 6777777674

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.63  E-value=2  Score=37.63  Aligned_cols=34  Identities=15%  Similarity=0.029  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278            6 AVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDF   39 (252)
Q Consensus         6 ~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i   39 (252)
                      .++.+..-...|++.|+|.|+++. |.-|..-|+-
T Consensus       174 ~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~  208 (285)
T PRK12847        174 CIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK  208 (285)
T ss_pred             HHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence            344455555789999999999876 7777766653

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=89.32  E-value=1.5  Score=38.36  Aligned_cols=32  Identities=19%  Similarity=0.136  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278            7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      ++-+..-..+||..|+|.|++.. |.-|+.-|+
T Consensus       168 ~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       168 GFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            34445556799999999998766 777777773

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=89.30  E-value=1.8  Score=38.50  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=25.0

Q ss_pred             HHHHHHHHHhhhhcchhhhhcCC-CCCccccCccCHH
Q 047278            7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFSRG   42 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~   42 (252)
                      ++-+..-.++|+..|+|.|++.. +.-|+.=|+-+.+
T Consensus       187 ~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~  223 (300)
T PRK13106        187 ILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALT  223 (300)
T ss_pred             HHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHH
Confidence            34444455789999999998876 7777766744333

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=88.77  E-value=2.2  Score=37.52  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=25.2

Q ss_pred             HHHHHHHHhhhhcchhhhhcCCC-CCccccCccCHHHHHHH
Q 047278            8 LMNIYVVTLNQLYDVEIDKVNKP-DLPLASGDFSRGTGIAI   47 (252)
Q Consensus         8 l~~~~~~~~Nd~~D~~~D~~n~~-~Rpl~sG~is~~~a~~~   47 (252)
                      +........||+.|+|.|+++.+ .-|.   ++.++.+...
T Consensus       172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l  209 (285)
T TIGR02235       172 LATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKI  209 (285)
T ss_pred             HHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHH
Confidence            45667778999999999999864 3343   3334555443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=88.47  E-value=2.4  Score=37.85  Aligned_cols=29  Identities=31%  Similarity=0.389  Sum_probs=22.3

Q ss_pred             HHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278           10 NIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus        10 ~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      ..+....||+.|+|.||++. |.-|+.-|+
T Consensus       202 ~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        202 AHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            44557899999999999875 666776664

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=88.30  E-value=2.4  Score=37.19  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHhhhhcchhhhhcCC-CCCccccC
Q 047278            6 AVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASG   37 (252)
Q Consensus         6 ~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG   37 (252)
                      ..+........||+.|+|.||++. +.-|.-=|
T Consensus       177 ~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG  209 (293)
T PRK06080        177 CGLLIGAVLLANNIRDIETDRENGKNTLAVRLG  209 (293)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC
Confidence            344566677899999999999876 44444334

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=87.89  E-value=2.8  Score=37.80  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278            5 PAVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus         5 ~~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      ...+...+...+||+.|+|.|++.. +.-|+.=|+
T Consensus       188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~  222 (331)
T PRK12392        188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA  222 (331)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence            3445566677799999999999875 666665553

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=87.76  E-value=3.3  Score=36.80  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278            8 LMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus         8 l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      +...+....||+.|+|.|+++. +.-|..-|+
T Consensus       194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~  225 (306)
T TIGR02056       194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI  225 (306)
T ss_pred             HHHHHHHHHHHccChHHHHHcCCcCcchhcCh
Confidence            4555666899999999999875 555654553

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=87.36  E-value=3.3  Score=36.23  Aligned_cols=30  Identities=30%  Similarity=0.277  Sum_probs=22.1

Q ss_pred             HHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278            9 MNIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus         9 ~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      ...+....||+.|+|.|+++. +.-|..-|+
T Consensus       173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            344567899999999999875 555665554

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=87.32  E-value=2.8  Score=37.10  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278            7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDF   39 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i   39 (252)
                      ++-+..-...||+.|+|.|+++. |.-|+.-|+-
T Consensus       185 ~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~  218 (297)
T PRK12871        185 YPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK  218 (297)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence            34455667899999999999876 7778777754

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=87.18  E-value=2.8  Score=36.53  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278            7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      ++........||+.|+|.|+++. |.-|+.-|+
T Consensus       164 fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~  196 (277)
T PRK12883        164 FLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK  196 (277)
T ss_pred             HHHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence            33444555779999999999876 777776664

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=86.84  E-value=5.9  Score=33.48  Aligned_cols=33  Identities=30%  Similarity=0.314  Sum_probs=23.7

Q ss_pred             HHHHHHHHhhcCCCchhhHhc-CcccchhhhchH
Q 047278          141 VLSFANGLLKDVPDVDGDRKF-DIQTLSVIVGRE  173 (252)
Q Consensus       141 ~~~~~~~~i~~~~D~~~D~~~-G~~Tl~v~~G~~  173 (252)
                      +.....+.+||+.|.|.|+.. +++.-|..-|+-
T Consensus        34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i   67 (257)
T PF01040_consen   34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRI   67 (257)
T ss_pred             HHHHHHHHhhChhhhhcCcccccccCcchhHHHH
Confidence            445567889999999999996 345555655544

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=86.74  E-value=5.1  Score=35.07  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278            7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDF   39 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i   39 (252)
                      ++-+..-...|++.|+|.|+++. |.-|+.-|+=
T Consensus       172 ~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~  205 (282)
T PRK12848        172 ILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRY  205 (282)
T ss_pred             HHHHHHHHHHHHhccHhhHHHcCCccccHHhccc
Confidence            33444555778999999999876 7777766654

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=85.83  E-value=3.6  Score=36.45  Aligned_cols=41  Identities=27%  Similarity=0.324  Sum_probs=24.7

Q ss_pred             HHHHHHHhhcCCCchhhHhc-Ccccchhh---hchHHHHHHHHHH
Q 047278          142 LSFANGLLKDVPDVDGDRKF-DIQTLSVI---VGRERVFWLCVSM  182 (252)
Q Consensus       142 ~~~~~~~i~~~~D~~~D~~~-G~~Tl~v~---~G~~~~~~l~~~l  182 (252)
                      ...+...+||+.|+|.|++. .+|.=|..   ...+.+..+...+
T Consensus        58 ~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l  102 (295)
T PRK12324         58 ASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL  102 (295)
T ss_pred             HHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH
Confidence            34566789999999999986 23333333   3444444444333

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=85.76  E-value=6.3  Score=34.39  Aligned_cols=42  Identities=10%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhhcCCCchhhHhcCcccchhhhc---hHHHHHHHHH
Q 047278          139 MCVLSFANGLLKDVPDVDGDRKFDIQTLSVIVG---RERVFWLCVS  181 (252)
Q Consensus       139 ~~~~~~~~~~i~~~~D~~~D~~~G~~Tl~v~~G---~~~~~~l~~~  181 (252)
                      ..+...+-..+||+.|+|.|++.. ++=|..=|   ++.+..+...
T Consensus        46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~   90 (279)
T PRK09573         46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSIT   90 (279)
T ss_pred             HHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHH
Confidence            334456678999999999999764 44454444   4444444433

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=85.59  E-value=11  Score=33.48  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=18.6

Q ss_pred             HhhcCCCchhhHhcCcccchhhhch
Q 047278          148 LLKDVPDVDGDRKFDIQTLSVIVGR  172 (252)
Q Consensus       148 ~i~~~~D~~~D~~~G~~Tl~v~~G~  172 (252)
                      .+||+.|+|-|+.+ +++-|+.=|+
T Consensus        71 ~iNd~~D~~iD~in-kp~rPiasG~   94 (308)
T PRK12887         71 GLNQLTDIEIDRIN-KPHLPLAAGE   94 (308)
T ss_pred             HHhhhhhHHHHhcC-CCCCCcCCcc
Confidence            39999999999864 5777765554

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=85.22  E-value=6.8  Score=34.45  Aligned_cols=32  Identities=19%  Similarity=0.038  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278            7 VLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus         7 ~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      .+-+..-..+|++.|+|.|++.. |.-|..-|+
T Consensus       169 ~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        169 GLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            34455667899999999999876 777776664

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=84.83  E-value=3.9  Score=35.63  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=22.5

Q ss_pred             HHHHHHHhhhhcchhhhhcCC-CCCccccCc
Q 047278            9 MNIYVVTLNQLYDVEIDKVNK-PDLPLASGD   38 (252)
Q Consensus         9 ~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~   38 (252)
                      ...+-..+||+.|+|.|+++. |.-|..-|+
T Consensus       169 ~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~  199 (276)
T PRK12882        169 ATLAREIIKDVEDIEGDRAEGARTLPILIGV  199 (276)
T ss_pred             HHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence            344556789999999999876 766765554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=84.69  E-value=12  Score=32.94  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=24.1

Q ss_pred             HHHHHHHHHhhcCCCchhhHhcCc-ccchhhhch
Q 047278          140 CVLSFANGLLKDVPDVDGDRKFDI-QTLSVIVGR  172 (252)
Q Consensus       140 ~~~~~~~~~i~~~~D~~~D~~~G~-~Tl~v~~G~  172 (252)
                      .+...+-..+||+.|+|-|++..+ |+=|..=|+
T Consensus        55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~   88 (289)
T PLN02809         55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA   88 (289)
T ss_pred             HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence            344556678999999999998654 456666665

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.59  E-value=6.1  Score=34.83  Aligned_cols=38  Identities=16%  Similarity=0.098  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhhhhcchhhhhcCC-CCCccccCccCHH
Q 047278            5 PAVLMNIYVVTLNQLYDVEIDKVNK-PDLPLASGDFSRG   42 (252)
Q Consensus         5 ~~~l~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~   42 (252)
                      +.++-+..-..+|++.|+|.|++.. |.-|+.-|+-+..
T Consensus       174 ~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~  212 (290)
T PRK12870        174 ATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPE  212 (290)
T ss_pred             HHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHH
Confidence            3444556666799999999999876 7777766654433

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=84.52  E-value=4.6  Score=35.54  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=24.6

Q ss_pred             HHHHHHHHhhhhcchhhhhcCCCC-CccccCccCHHHHHHH
Q 047278            8 LMNIYVVTLNQLYDVEIDKVNKPD-LPLASGDFSRGTGIAI   47 (252)
Q Consensus         8 l~~~~~~~~Nd~~D~~~D~~n~~~-Rpl~sG~is~~~a~~~   47 (252)
                      +........||+.|+|.|+++.++ -|.   ++.++.+..+
T Consensus       175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l  212 (284)
T TIGR00751       175 LLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMY  212 (284)
T ss_pred             HHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHH
Confidence            445677779999999999998643 333   3344555443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=82.46  E-value=9.9  Score=33.52  Aligned_cols=30  Identities=23%  Similarity=0.197  Sum_probs=22.2

Q ss_pred             HHHHHHhhhhcchhhhhcCC-CCCccccCcc
Q 047278           10 NIYVVTLNQLYDVEIDKVNK-PDLPLASGDF   39 (252)
Q Consensus        10 ~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~i   39 (252)
                      +..-..+|++.|+|.|++.. |.-|+.-|+-
T Consensus       175 ~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~  205 (291)
T PRK12886        175 VAGFDILYALQDLEFDRKEGLHSIPAKLGVN  205 (291)
T ss_pred             HHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence            33344688899999999766 7778777753

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00