Citrus Sinensis ID: 047293

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
MSSAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFLT
cccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHc
MSSAQDPFYIVKEEIQDSINKLQSTFHqwensasdpgeqvHLKKELLAGCESIEWQVDELDKAIgvasrdpswygiddieleKRRRWTSTARTQVSSMKKAVLsggangvgtmsaSGMRRElmrlpnshqaksnqyaaaqdnddfiqsESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELgtemdstsnRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFLT
MSSAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAigvasrdpswygiddielekrrrwtstartqvssmkkavlsggangvgTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFLT
MSSAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQkkvamvmkkasakGQIMMilflialfivlfvlvflT
*******FYIVKEEI***I********************VHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRW**********************************************************************************SVQRIGGVGLTIHDELVAQENIIDELGTEM***SNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFL*
**SAQDPFYIVKEEIQDSINKL***************************CESIEWQVDELD*********************************************ANGVGTMSASGM*************************DFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNR*************KASAKGQIMMILFLIALFIVLFVLVFLT
MSSAQDPFYIVKEEIQDSINKLQSTFHQW**********VHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRW************KAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFLT
****QDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKA****************************************NDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLFVLVFLT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
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MSSAQDPFYIVxxxxxxxxxxxxxxxxxxxxxASDPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLTIHDELVAQENIxxxxxxxxxxxxxxxxxxxxxVAMVMKKASAKGQIMMILFLIALFIVLFVLVFLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query246 2.2.26 [Sep-21-2011]
Q946Y7245 Syntaxin-61 OS=Arabidopsi yes no 0.995 1.0 0.731 1e-101
Q5R6Q2255 Syntaxin-6 OS=Pongo abeli yes no 0.829 0.8 0.311 5e-20
O43752255 Syntaxin-6 OS=Homo sapien yes no 0.829 0.8 0.311 5e-20
Q5ZL19254 Syntaxin-6 OS=Gallus gall yes no 0.841 0.814 0.294 7e-20
Q63635255 Syntaxin-6 OS=Rattus norv yes no 0.910 0.878 0.287 3e-19
Q9JKK1255 Syntaxin-6 OS=Mus musculu yes no 0.910 0.878 0.287 4e-19
O60499249 Syntaxin-10 OS=Homo sapie no no 0.910 0.899 0.269 1e-16
P83528122 Putative syntaxin C15C7.1 yes no 0.337 0.680 0.361 5e-06
Q9SA23232 Syntaxin-51 OS=Arabidopsi no no 0.621 0.659 0.254 8e-06
Q94KK7233 Syntaxin-52 OS=Arabidopsi no no 0.463 0.489 0.267 9e-06
>sp|Q946Y7|SYP61_ARATH Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1 Back     alignment and function desciption
 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/246 (73%), Positives = 206/246 (83%), Gaps = 1/246 (0%)

Query: 1   MSSAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDEL 60
           MSSAQDPFYIVKEEIQDSI+KLQSTFH+WE  + D G+Q H+ KEL+A C SIEWQVDEL
Sbjct: 1   MSSAQDPFYIVKEEIQDSIDKLQSTFHKWERISPDMGDQAHVAKELVATCGSIEWQVDEL 60

Query: 61  DKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRR 120
           +KAI VA++DPSWYGID+ ELEKRRRWTS ARTQV ++K  VL+G  +  G   AS +RR
Sbjct: 61  EKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSS-GAGHASEVRR 119

Query: 121 ELMRLPNSHQAKSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGLT 180
           ELMR+PNS +A        +D+D F+QSESDRQ+LL+KQQDEELDELS SVQRIGGVGLT
Sbjct: 120 ELMRMPNSGEASRYDQYGGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGLT 179

Query: 181 IHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVLF 240
           IHDELVAQE IIDEL TEMDST NRL+FVQKKV MVMKKA AKGQ+MMI FL+ LFI+LF
Sbjct: 180 IHDELVAQERIIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQMMMICFLLVLFIILF 239

Query: 241 VLVFLT 246
           VLVFLT
Sbjct: 240 VLVFLT 245
Vesicle trafficking protein that functions in the secretory pathway. Involved in osmotic stress tolerance and in abscisic acid (ABA) regulation of stomatal responses.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5R6Q2|STX6_PONAB Syntaxin-6 OS=Pongo abelii GN=STX6 PE=2 SV=1 Back     alignment and function description
>sp|O43752|STX6_HUMAN Syntaxin-6 OS=Homo sapiens GN=STX6 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZL19|STX6_CHICK Syntaxin-6 OS=Gallus gallus GN=STX6 PE=2 SV=1 Back     alignment and function description
>sp|Q63635|STX6_RAT Syntaxin-6 OS=Rattus norvegicus GN=Stx6 PE=1 SV=1 Back     alignment and function description
>sp|Q9JKK1|STX6_MOUSE Syntaxin-6 OS=Mus musculus GN=Stx6 PE=1 SV=1 Back     alignment and function description
>sp|O60499|STX10_HUMAN Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1 SV=1 Back     alignment and function description
>sp|P83528|STX5_CAEEL Putative syntaxin C15C7.1 OS=Caenorhabditis elegans GN=C15C7.1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SA23|SYP51_ARATH Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1 Back     alignment and function description
>sp|Q94KK7|SYP52_ARATH Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
449454530246 PREDICTED: syntaxin-61-like [Cucumis sat 0.995 0.995 0.789 1e-109
224116268246 predicted protein [Populus trichocarpa] 0.991 0.991 0.798 1e-109
296084315301 unnamed protein product [Vitis vinifera] 0.995 0.813 0.782 1e-109
359478208247 PREDICTED: syntaxin-61-like [Vitis vinif 0.995 0.991 0.782 1e-109
224079159246 predicted protein [Populus trichocarpa] 0.991 0.991 0.790 1e-109
359806469246 uncharacterized protein LOC100787129 [Gl 0.947 0.947 0.774 1e-100
18396813245 syntaxin-61 [Arabidopsis thaliana] gi|29 0.995 1.0 0.731 2e-99
18175840245 unknown protein [Arabidopsis thaliana] 0.995 1.0 0.727 2e-99
356553080242 PREDICTED: syntaxin-61-like [Glycine max 0.934 0.950 0.773 3e-99
356567342246 PREDICTED: syntaxin-61-like [Glycine max 0.947 0.947 0.770 3e-99
>gi|449454530|ref|XP_004145007.1| PREDICTED: syntaxin-61-like [Cucumis sativus] gi|449474827|ref|XP_004154296.1| PREDICTED: syntaxin-61-like [Cucumis sativus] gi|449498935|ref|XP_004160675.1| PREDICTED: syntaxin-61-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/247 (78%), Positives = 221/247 (89%), Gaps = 2/247 (0%)

Query: 1   MSSAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDEL 60
           M SAQDPFY+VK+EIQ+SI+KLQS+FHQWE  +SD GE+V   KELLA CESIEWQVDEL
Sbjct: 1   MPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERVQQTKELLASCESIEWQVDEL 60

Query: 61  DKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRR 120
           DKAI VA+RDPSWYGID+ ELEKRRRWTSTARTQV ++KK V+  G   +GT SASGMRR
Sbjct: 61  DKAIAVAARDPSWYGIDNAELEKRRRWTSTARTQVGNVKK-VVGAGKEQIGTASASGMRR 119

Query: 121 ELMRLPNSHQA-KSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGL 179
           ELMRLPN+H+  +SN Y+A Q NDDFI SESDRQLLL+KQQDEELDELSASV+RIGGVGL
Sbjct: 120 ELMRLPNAHETDRSNLYSAHQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGL 179

Query: 180 TIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFIVL 239
           TIH+EL+AQ+ IID+LG EMDSTSNRLDFVQKKVA+VMKKASAKGQIMMILFL+ALFI+L
Sbjct: 180 TIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIIL 239

Query: 240 FVLVFLT 246
           FVLVFLT
Sbjct: 240 FVLVFLT 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116268|ref|XP_002331940.1| predicted protein [Populus trichocarpa] gi|222874717|gb|EEF11848.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296084315|emb|CBI24703.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359478208|ref|XP_003632086.1| PREDICTED: syntaxin-61-like [Vitis vinifera] gi|147821239|emb|CAN72346.1| hypothetical protein VITISV_034578 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224079159|ref|XP_002305773.1| predicted protein [Populus trichocarpa] gi|222848737|gb|EEE86284.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359806469|ref|NP_001241250.1| uncharacterized protein LOC100787129 [Glycine max] gi|255645481|gb|ACU23236.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18396813|ref|NP_564310.1| syntaxin-61 [Arabidopsis thaliana] gi|297845794|ref|XP_002890778.1| hypothetical protein ARALYDRAFT_473066 [Arabidopsis lyrata subsp. lyrata] gi|28380156|sp|Q946Y7.1|SYP61_ARATH RecName: Full=Syntaxin-61; Short=AtSYP61; AltName: Full=Osmotic stress-sensitive mutant 1 gi|16041650|gb|AAK40222.2|AF355754_1 syntaxin of plants 61 [Arabidopsis thaliana] gi|23297416|gb|AAN12965.1| unknown protein [Arabidopsis thaliana] gi|297336620|gb|EFH67037.1| hypothetical protein ARALYDRAFT_473066 [Arabidopsis lyrata subsp. lyrata] gi|332192861|gb|AEE30982.1| syntaxin-61 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18175840|gb|AAL59937.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356553080|ref|XP_003544886.1| PREDICTED: syntaxin-61-like [Glycine max] Back     alignment and taxonomy information
>gi|356567342|ref|XP_003551880.1| PREDICTED: syntaxin-61-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
TAIR|locus:2032569245 SYP61 "syntaxin of plants 61" 0.918 0.922 0.685 2.1e-77
ZFIN|ZDB-GENE-030131-858256 stx6 "syntaxin 6" [Danio rerio 0.833 0.800 0.3 1.9e-21
UNIPROTKB|Q5ZL19254 STX6 "Syntaxin-6" [Gallus gall 0.825 0.799 0.295 2.4e-21
UNIPROTKB|A2VE18255 STX6 "Uncharacterized protein" 0.829 0.8 0.290 3.9e-21
UNIPROTKB|E2RCG5255 STX6 "Uncharacterized protein" 0.829 0.8 0.290 4.9e-21
UNIPROTKB|F1NCD1255 STX6 "Syntaxin-6" [Gallus gall 0.825 0.796 0.298 1e-20
UNIPROTKB|O43752255 STX6 "Syntaxin-6" [Homo sapien 0.829 0.8 0.281 1.3e-20
UNIPROTKB|F1S678255 STX6 "Uncharacterized protein" 0.833 0.803 0.287 1.7e-20
MGI|MGI:1926235255 Stx6 "syntaxin 6" [Mus musculu 0.829 0.8 0.286 1.7e-20
RGD|61915255 Stx6 "syntaxin 6" [Rattus norv 0.829 0.8 0.286 1.7e-20
TAIR|locus:2032569 SYP61 "syntaxin of plants 61" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 157/229 (68%), Positives = 183/229 (79%)

Query:     1 MSSAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVHLKKELLAGCESIEWQVDEL 60
             MSSAQDPFYIVKEEIQDSI+KLQSTFH+WE  + D G+Q H+ KEL+A C SIEWQVDEL
Sbjct:     1 MSSAQDPFYIVKEEIQDSIDKLQSTFHKWERISPDMGDQAHVAKELVATCGSIEWQVDEL 60

Query:    61 DKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRR 120
             +KAI VA++DPSWYGID+ ELEKRRRWTS ARTQV ++K  VL+G  +  G   AS +RR
Sbjct:    61 EKAITVAAKDPSWYGIDEAELEKRRRWTSNARTQVRNVKSGVLAGKVSS-GAGHASEVRR 119

Query:   121 ELMRLPNSHQA-KSNQYAAAQDNDDFIQSESDRQLLLVKQQDEELDELSASVQRIGGVGL 179
             ELMR+PNS +A + +QY   +D+D F+QSESDRQ+LL+KQQDEELDELS SVQRIGGVGL
Sbjct:   120 ELMRMPNSGEASRYDQYGG-RDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGL 178

Query:   180 TIHDELVAQENIIDELGTEMDSTSNRLDFVQXXXXXXXXXXXXXGQIMM 228
             TIHDELVAQE IIDEL TEMDST NRL+FVQ             GQ+MM
Sbjct:   179 TIHDELVAQERIIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQMMM 227
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;ISS;IDA
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0048193 "Golgi vesicle transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=ISS;RCA
GO:0030140 "trans-Golgi network transport vesicle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=RCA
ZFIN|ZDB-GENE-030131-858 stx6 "syntaxin 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL19 STX6 "Syntaxin-6" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE18 STX6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCG5 STX6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCD1 STX6 "Syntaxin-6" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O43752 STX6 "Syntaxin-6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S678 STX6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1926235 Stx6 "syntaxin 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|61915 Stx6 "syntaxin 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q946Y7SYP61_ARATHNo assigned EC number0.73170.99591.0yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01870011
hypothetical protein (246 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
pfam0917796 pfam09177, Syntaxin-6_N, Syntaxin 6, N-terminal 1e-32
pfam0573962 pfam05739, SNARE, SNARE domain 1e-08
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 6e-06
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 1e-05
>gnl|CDD|220133 pfam09177, Syntaxin-6_N, Syntaxin 6, N-terminal Back     alignment and domain information 
 Score =  113 bits (286), Expect = 1e-32
 Identities = 38/96 (39%), Positives = 61/96 (63%), Gaps = 2/96 (2%)

Query: 6  DPFYIVKEEIQDSINKLQSTFHQWENSASDPG--EQVHLKKELLAGCESIEWQVDELDKA 63
          DPF+ VK+E+Q SI+KL+S +  W    SD    E   L KEL    ESIEW +++L++A
Sbjct: 1  DPFFEVKDEVQKSIDKLRSLYRSWLRIRSDSNSPELDELTKELRNALESIEWDLEDLEEA 60

Query: 64 IGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMK 99
          + V   +P  +G+D+ E+ +RRR+ +  R Q++ +K
Sbjct: 61 VSVVEANPEKFGLDEEEISRRRRFVAEIRNQINEVK 96

Members of this family, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport. Length = 96
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 246
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 99.82
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.81
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 99.76
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.64
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.63
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 99.63
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.61
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.48
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.46
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.22
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.19
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 98.93
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 98.71
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 98.68
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 98.06
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 98.04
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 97.51
KOG2678244 consensus Predicted membrane protein [Function unk 97.43
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 97.33
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.29
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 97.15
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.06
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 96.84
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 96.36
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 96.36
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 96.16
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 95.91
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 95.33
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 95.27
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 95.24
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 93.8
PF01519102 DUF16: Protein of unknown function DUF16; InterPro 90.45
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 90.14
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 89.47
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 88.63
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 88.19
PF07889126 DUF1664: Protein of unknown function (DUF1664); In 87.16
PF0421070 MtrG: Tetrahydromethanopterin S-methyltransferase, 85.23
PRK11637 428 AmiB activator; Provisional 83.88
TIGR0114970 mtrG N5-methyltetrahydromethanopterin:coenzyme M m 83.72
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 83.04
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 82.26
PF1518885 CCDC-167: Coiled-coil domain-containing protein 16 82.05
PRK0102677 tetrahydromethanopterin S-methyltransferase subuni 81.94
PF0421070 MtrG: Tetrahydromethanopterin S-methyltransferase, 81.92
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 81.87
PRK0102677 tetrahydromethanopterin S-methyltransferase subuni 81.35
PF0500879 V-SNARE: Vesicle transport v-SNARE protein N-termi 81.15
PF1116698 DUF2951: Protein of unknown function (DUF2951); In 80.97
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 80.07
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-38  Score=262.91  Aligned_cols=231  Identities=34%  Similarity=0.520  Sum_probs=190.5

Q ss_pred             CCCCCCchHhHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHH
Q 047293            1 MSSAQDPFYIVKEEIQDSINKLQSTFHQWENSASD-PGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDI   79 (246)
Q Consensus         1 m~~~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~~-~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~   79 (246)
                      |++..|||+.++.++.+..+.+++.|++|.++.++ ++++.+.+..|+   ..+.+++++|+.++.+++++|++|+++..
T Consensus         1 ~~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~~~~~ide~   77 (235)
T KOG3202|consen    1 MLSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLR---RSIEEDLEDLDELISILERNPSKFGIDEF   77 (235)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCcccccCcHH
Confidence            78999999999999999999999999999998777 778999999999   67788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchhhhhhhhcCCCCCC-C-ccchhhhccCChhHhhhHHHHHHHHH
Q 047293           80 ELEKRRRWTSTARTQVSSMKKAVLSGGANGVGTMSASGMRRELMRLPNSHQ-A-KSNQYAAAQDNDDFIQSESDRQLLLV  157 (246)
Q Consensus        80 El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~-~-~~~~~~~~~~n~~~~~~~~~~Q~~~~  157 (246)
                      |+++|+.++.+++.++++++..|.+....     + ...|..+++.+..+. . .+.+.. +.||   .+...++|++++
T Consensus        78 El~~R~~~i~~lr~q~~~~~~~~~~~~~~-----~-~~~r~~l~~~~~~~~~~~~~~~~~-~~D~---v~~~~~~qqqm~  147 (235)
T KOG3202|consen   78 ELSRRRRFIDNLRTQLRQMKSKMAMSGFA-----N-SNIRDILLGPEKSPNLDEAMSRAS-GLDN---VQEIVQLQQQML  147 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc-----c-ccchhhhcCCCCCCchhhhHHHhh-ccCc---HHHHHHHHHHHH
Confidence            99999999999999999999999872211     1 122455555433221 1 222333 4443   344568999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHH
Q 047293          158 KQQDEELDELSASVQRIGGVGLTIHDELVAQENIIDELGTEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILFLIALFI  237 (246)
Q Consensus       158 ~~qD~~l~~l~~~v~~l~~~~~~i~~el~~Q~~lLd~i~~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~li~~~i  237 (246)
                      ++||++|+.|+++|+++|++|..||+|+++|+.+||++++.||.+++++.++++++.++.++.++|++| |+++++++++
T Consensus       148 ~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~-~~il~l~~~~  226 (235)
T KOG3202|consen  148 QEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQW-CAILLLVGLL  226 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-hHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999987777654 4444445555


Q ss_pred             HHHHHHHh
Q 047293          238 VLFVLVFL  245 (246)
Q Consensus       238 ~l~~~~~~  245 (246)
                      ++++++|+
T Consensus       227 ~lvv~i~~  234 (235)
T KOG3202|consen  227 LLVVIIFI  234 (235)
T ss_pred             HHHHHHhc
Confidence            55555554

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function Back     alignment and domain information
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167 Back     alignment and domain information
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional Back     alignment and domain information
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional Back     alignment and domain information
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles Back     alignment and domain information
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
1lvf_A110 Syntaxin 6 Length = 110 4e-10
4dnd_A130 Crystal Structure Of Syntaxin 10 From Homo Sapiens 8e-08
>pdb|1LVF|A Chain A, Syntaxin 6 Length = 110 Back     alignment and structure 
Iteration: 1

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 3   SAQDPFYIVKEEIQDSINKLQSTFHQWENSASDPGEQVH-----LKKELLAGCESIEWQV 57
           S +DPF++VK E+Q ++N  Q  F +W      P             EL     SIEW +
Sbjct: 2   SMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDL 61
Query: 58  DELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMK 99
           ++LD+ I +   +P  + +D  EL  R+ + ++ R  V  MK
Sbjct: 62  EDLDETISIVEANPRKFNLDATELSIRKAFITSTRQIVRDMK 103
>pdb|4DND|A Chain A, Crystal Structure Of Syntaxin 10 From Homo Sapiens Length = 130 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 3e-31
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 6e-19
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 8e-15
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 5e-08
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 6e-06
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 5e-04
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Length = 130 Back     alignment and structure
 Score =  111 bits (278), Expect = 3e-31
 Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 2   SSAQDPFYIVKEEIQDSINKLQSTFHQW-----ENSASDPGEQVHLKKELLAGCESIEWQ 56
            S +DPF++V+ E+Q ++N  +  + +W     E++A    E      EL  G  SIEW 
Sbjct: 23  MSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWD 82

Query: 57  VDELDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104
           +++L++ IG+   +P  + +   +L++R+ +    R  V  MK  ++S
Sbjct: 83  LEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMVS 130
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82 Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 87 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 99.83
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 99.75
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 99.64
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.62
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.56
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 99.55
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 99.53
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 99.46
2c5k_T95 Syntaxin TLG1, T-snare affecting A late golgi comp 99.45
3b5n_D64 Protein transport protein SEC9; snare complex, syn 99.42
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.38
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.26
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.13
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.02
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 98.98
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 98.9
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 98.89
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 98.35
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 98.33
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 97.59
1s94_A180 S-syntaxin; three helix bundle, structural plastic 97.29
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.23
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.12
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 96.44
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 95.49
3b5n_C70 Protein transport protein SEC9; snare complex, syn 94.6
2nps_C81 Vesicle transport through interaction with T- snar 94.37
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 94.23
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 94.21
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 94.2
4fi5_A113 Nucleoprotein; structural genomics, niaid, nationa 90.25
1vcs_A102 Vesicle transport through interaction with T- snar 90.16
2k48_A107 Nucleoprotein; viral protein; NMR {Andes virus} 89.82
2ic6_A78 Nucleocapsid protein; hantavirus, bunyaviridae, ss 88.87
2ic9_A96 Nucleocapsid protein; hantavirus, bunyaviridae, ss 85.78
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
Probab=99.83  E-value=4.3e-20  Score=140.61  Aligned_cols=102  Identities=26%  Similarity=0.569  Sum_probs=90.7

Q ss_pred             CCCCCchHhHHHHHHHHHHHHHHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCC
Q 047293            2 SSAQDPFYIVKEEIQDSINKLQSTFHQWENSAS-----DPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGI   76 (246)
Q Consensus         2 ~~~~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~-----~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~i   76 (246)
                      ||..|||+.+++||.++++.+++.|.+|..+..     +++++.+++.+|+..|..|+++|++|++++.++++||.+|+|
T Consensus        23 ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l  102 (130)
T 4dnd_A           23 MSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKL  102 (130)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCC
Confidence            346799999999999999999999999987543     235899999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047293           77 DDIELEKRRRWTSTARTQVSSMKKAVL  103 (246)
Q Consensus        77 s~~El~~R~~~v~~l~~~~~~l~~~~~  103 (246)
                      ++.|+.+|+.||..++.++++|+..++
T Consensus       103 ~~~Ei~~Rr~fV~~~r~~I~~mk~~l~  129 (130)
T 4dnd_A          103 PAGDLQERKVFVERMREAVQEMKDHMV  129 (130)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998764
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus} Back     alignment and structure
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1 Back     alignment and structure
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus} Back     alignment and structure
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus} Back     alignment and structure
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 246
d1lvfa_106 a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Ra 2e-30
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 5   QDPFYIVKEEIQDSINKLQSTFHQW-----ENSASDPGEQVHLKKELLAGCESIEWQVDE 59
           +DPF++VK E+Q ++N  Q  F +W       SA+   E      EL     SIEW +++
Sbjct: 1   EDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLED 60

Query: 60  LDKAIGVASRDPSWYGIDDIELEKRRRWTSTARTQVSSMKKAVLS 104
           LD+ I +   +P  + +D  EL  R+ + ++ R  V  MK  + +
Sbjct: 61  LDETISIVEANPRKFNLDATELSIRKAFITSTRQIVRDMKDQMSA 105

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 99.8
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 98.05
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 97.38
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=4.5e-19  Score=129.11  Aligned_cols=100  Identities=30%  Similarity=0.592  Sum_probs=93.7

Q ss_pred             CCchHhHHHHHHHHHHHHHHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHH
Q 047293            5 QDPFYIVKEEIQDSINKLQSTFHQWENSAS-----DPGEQVHLKKELLAGCESIEWQVDELDKAIGVASRDPSWYGIDDI   79 (246)
Q Consensus         5 ~Dpf~~~~~ev~~~l~~l~~~~~~~~~l~~-----~~~~~~~~~~ei~~~i~~l~~~l~~L~~~l~~~~~~~~k~~is~~   79 (246)
                      .||||.+.+||.++++.+++.|.+|..+..     +++++.++..+|+..|+.++++|++|++++.++++||.||+|++.
T Consensus         1 eDPF~~v~~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~~   80 (106)
T d1lvfa_           1 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDAT   80 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHH
Confidence            599999999999999999999999987642     346889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc
Q 047293           80 ELEKRRRWTSTARTQVSSMKKAVLS  104 (246)
Q Consensus        80 El~~R~~~v~~l~~~~~~l~~~~~~  104 (246)
                      |+.+|++||...+.++++|++.+++
T Consensus        81 ei~~Rr~fi~~~~~~I~~~~~~l~~  105 (106)
T d1lvfa_          81 ELSIRKAFITSTRQIVRDMKDQMSA  105 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998864
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure