Citrus Sinensis ID: 047297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MAQQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQCIPTLIVALILILDEINHARSSSSSIGGVGGGVIGGFI
Secondary Structure (PSIPRED)
ccccccccccccccccEEcccccccccEEEEEEEEEEEEEcccEEEEEccccEEEEEcEEEEEcccccEEEEEEEcccccccccEEEEccccccccEEEEEEccccccccccEEEEEEccccccccccEEEEccccccccccEEEEEEccccEEEEEEHHHHHHHHEEEEEccccccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEcccccccccEEEEEEEEEEEEccccEEEEEccccEEEEccEEEEEccccccEEEEEEccccccccEEEEEccccccccEEEEEEEcccEEEcccEEEEEEccccccccccEEEEEccccccccccEEEEEccccEEEEEEcHHHHHHHHHHHHHHcccccccccccccccccEcccc
Coil and Loop (DISEMBL)
maqqpssggavanlvpvispqyccphpidLAIVRKVTVLssgnidvkdtndvsplMERRRVLLGGVGNRIVTLRLNTITqhnrwqvfrgesTERRHLIFSAKissgwfsrttKLDVFLanntrkdacdfrvvksssrlseppsctiyagesstivdQCIPTLIVALILILDEInharsssssiggvgggviggfi
Flexible Loop (DISEMBL)
maqqpssggaVANLVPVISPQYCCPHPIDLAIVRKVTVLSsgnidvkdtndvsplmERRRVLLGGVGNRIVTLrlntitqhnrwqvfrgesteRRHLIFsakissgwfsrTTKLDVFLanntrkdacdfrvvksssrlseppscTIYAGESSTIVDQCIPTLIVALILILDEINharsssssiggvgggviggfi
Low Complexity Region (SEG)
MAQQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMErrrvllggvgNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQCIPTLIVALILILDEINHARsssssiggvgggviggFI
Disordered region (IsUnstruct)
**********VANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVK*********SCTIYAGESSTIVDQCIPTLIVALILILDEINH********************
Disordered Region (DISOPRED)
***************PVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQCIPTLIVALILILDEINH**********VGGGVIGGFI
Disordered Region (DISEMBL)
*********AVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQCIPTLIVALILILDEINHARSSSSSIGGVGGGVIGGFI
Disordered Region (DISPRO)
**********VANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQCIPTLIVALILILDEINHARSS*SSIGGV******GFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQCIPTLIVALILILDEINHARSSSSSIGGVGGGVIGGFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q9LZX1	217	Protein LURP-one-related	no	no	0.830	0.746	0.390	6e-29
Q9SF24	194	Protein LURP-one-related	no	no	0.830	0.835	0.363	2e-24
Q9LQ36	224	Protein LURP-one-related	no	no	0.758	0.660	0.366	5e-24
Q9ZQR8	207	Protein LURP1 OS=Arabidop	no	no	0.687	0.647	0.401	2e-22
Q9LSQ1	185	Protein LURP-one-related	no	no	0.815	0.859	0.307	2e-14
Q9LYM3	204	Protein LURP-one-related	no	no	0.635	0.607	0.338	4e-12
B3H5L1	197	Protein LURP-one-related	no	no	0.687	0.680	0.281	3e-05

>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1

 Score =  127 bits (318), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 108/205 (52%), Gaps = 43/205 (20%)

Query: 2   AQQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTND------VSPL 55
           A  P +GG V      + P+YC P+PID+AIVRK+  L+ GN  + D N         P+
Sbjct: 18  APTPQAGGVV------VDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPV 71

Query: 56  --MERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTK 113
             +  +RVLL G G  +VTLR   ++ H+RWQVFRG ST++R L+++ K SS      TK
Sbjct: 72  FGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSS-MLQLKTK 130

Query: 114 LDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ---------------- 157
           LDVFL +N  +  CDFRV    S L    SC +YAGES  IV Q                
Sbjct: 131 LDVFLGHNKDEKRCDFRV--KGSWLER--SCVVYAGESDAIVAQMHRKHTVQSVFLGKDN 186

Query: 158 ----CIP----TLIVALILILDEIN 174
                 P      I +L++ILD++N
Sbjct: 187 FSVTVYPNVDYAFIASLVVILDDVN 211

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740 PE=2 SV=2

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 101/198 (51%), Gaps = 36/198 (18%)

Query: 15  VPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTND------VSPL--MERRRVLLGGV 66
           + ++SP +C P+PI+L IVRKV  L+ GN  V D N         PL  +  +R+LL   
Sbjct: 1   MAIVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAY 60

Query: 67  GNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDA 126
              I+TLR N ++ H+RW V+RG+ST++  L+++ K SS       KLD+FLA+N     
Sbjct: 61  DTPILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEMKI 120

Query: 127 CDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ--------------------CIP----TL 162
           CDF V    S +    SC +YAG+S  IV Q                      P      
Sbjct: 121 CDFHV--KGSWIDR--SCVVYAGKSDAIVAQMHKKHTAQSILIGKSNFSVTVYPNVDFAF 176

Query: 163 IVALILILDEINHARSSS 180
           IV+LI+ILD+IN   S  
Sbjct: 177 IVSLIVILDDINREDSED 194

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840 PE=2 SV=2

 Score =  110 bits (276), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 13/161 (8%)

Query: 5   PSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTN--------DVSPLM 56
           PS+         ++ P+YC  HP+DLAIVRKV  ++ GN  + +          D    +
Sbjct: 15  PSAPPPPPKAGVIVDPKYCSLHPVDLAIVRKVLKITDGNFVITNAEGNLLFKVKDPFFSL 74

Query: 57  ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDV 116
             +R+L+ G G +++TL+   +T H+RW VFRG STE   L+++ K  S     TTKLDV
Sbjct: 75  HEKRILMDGFGTKVLTLKGKIMTMHDRWLVFRGGSTEEVDLLYTVK-RSNMVQITTKLDV 133

Query: 117 FLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ 157
           FLA+N  +  CD+R+      +    SC +YAG+S  I+ Q
Sbjct: 134 FLADNIEQKKCDYRL----EGVWLETSCFVYAGDSDIILAQ 170

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 87/147 (59%), Gaps = 13/147 (8%)

Query: 17  VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDV------SPL--MERRRVLLGGVGN 68
           ++  +YC P+P+ LAIVRKV  ++ GN  +   +         PL  +  +R+LL   G 
Sbjct: 7   IVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDCSGA 66

Query: 69  RIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACD 128
           +++TLR   +T H+RWQVFRG STE   L+++ K SS       KL+VFLANN  +  CD
Sbjct: 67  KVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSS-MIQLAPKLEVFLANNVEEKICD 125

Query: 129 FRVVKSSSRLSEPPSCTIYAGESSTIV 155
           F+V    + L +  SC +YAG+S TI+
Sbjct: 126 FKV--KGAWLDD--SCVVYAGDSDTII 148

Involved in basal defense against virulent oomycetes. Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 36/195 (18%)

Query: 1   MAQQ-PSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGN--IDVKDTNDVSPL-- 55
           MA+Q P+S      ++P++  ++  P P+DL I       ++GN    VK     +PL  
Sbjct: 1   MAKQDPTSSNT---MLPLVGSEFVRPQPLDLTITGDTVKDATGNKVFKVK-----TPLFG 52

Query: 56  MERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLD 115
           +  +R+L+    + IVT+++   ++H+RWQV+RG   + +  IF+ K SS      T+++
Sbjct: 53  LHNKRILVDPNDSPIVTMKMKVTSKHDRWQVYRGSDLDDK--IFTVKRSST-VQLKTRVE 109

Query: 116 VFLANN-TRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQCIP-------------- 160
           VFL +N TR+ +CDF +     R  +  +CTIY  +S+ I+ Q                 
Sbjct: 110 VFLKHNQTRESSCDFTI---KGRFMK-RACTIYVADSTKIIAQVYEGHERLVATIYPNVD 165

Query: 161 -TLIVALILILDEIN 174
              IV LI I D IN
Sbjct: 166 YAFIVTLIFIFDLIN 180

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYM3|LOR14_ARATH Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180 PE=2 SV=2

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 12/136 (8%)

Query: 15  VPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPL--------MERRRVLLGGV 66
           + V+S Q+C P+P+DL + RKV   S    +V D +    L          R+RV+    
Sbjct: 16  ISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAWGFNRKRVMRDPA 75

Query: 67  GNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLA--NNTRK 124
           G  I+++R   +   N+W+V  GES ER  L+F+ + S    S  T +DVFL   NN +K
Sbjct: 76  GFTILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQA-VSLKTSVDVFLPENNNVKK 134

Query: 125 -DACDFRVVKSSSRLS 139
            + CDF      S +S
Sbjct: 135 TNTCDFHASGGYSNIS 150

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|B3H5L1|LOR9_ARATH Protein LURP-one-related 9 OS=Arabidopsis thaliana GN=At3g10986 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 19/153 (12%)

Query: 14  LVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPL--------MERRRVLLGG 65
           +V V+   +C P+  +L + R+   L     DV D ++            + R+RVL   
Sbjct: 1   MVSVVGEMFCNPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVDGGIWNIRRKRVLRDA 60

Query: 66  VGNRIVTLRLN-TITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFL-ANNTR 123
            G  ++++R    +     W+V++G+STE  +L+FSA+      S  T LDV L  + + 
Sbjct: 61  AGIPLLSMRTKGLVPMRYNWEVYKGDSTESDNLLFSAR-EPNLLSFKTSLDVTLPPDQSS 119

Query: 124 KDAC----DF----RVVKSSSRLSEPPSCTIYA 148
            D      DF    R + SS +L EP   T+ A
Sbjct: 120 TDISSVEPDFQTFGRYIGSSFKLFEPIHNTLLA 152

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
255586349	215	conserved hypothetical protein [Ricinus	0.907	0.823	0.422	2e-33
356568182	216	PREDICTED: protein LURP-one-related 15-l	0.789	0.712	0.455	2e-32
388504720	214	unknown [Lotus japonicus]	0.805	0.733	0.463	1e-31
357506501	226	hypothetical protein MTR_7g072170 [Medic	0.943	0.814	0.415	1e-31
388516681	216	unknown [Lotus japonicus]	0.815	0.736	0.454	2e-31
255637572	216	unknown [Glycine max]	0.789	0.712	0.450	3e-31
356532197	215	PREDICTED: protein LURP-one-related 15-l	0.856	0.776	0.444	2e-30
357506493	212	hypothetical protein MTR_7g072120 [Medic	0.856	0.787	0.432	4e-30
356496281	198	PREDICTED: protein LURP-one-related 15-l	0.805	0.792	0.436	1e-28
351722077	198	uncharacterized protein LOC100527088 [Gl	0.805	0.792	0.441	1e-28

>gi|255586349|ref|XP_002533824.1| conserved hypothetical protein [Ricinus communis] gi|223526241|gb|EEF28559.1| conserved hypothetical protein [Ricinus communis]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 126/220 (57%), Gaps = 43/220 (19%)

Query: 1   MAQQPS--SGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTND------- 51
           MA + S  S   +AN V +ISPQYC P+P+DLAIVRKV  L+ GN DV+D N        
Sbjct: 1   MATEASGTSAAPLANPVAIISPQYCYPYPVDLAIVRKVWTLADGNFDVQDINGNIIFKVK 60

Query: 52  --VSPLMERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFS 109
             +   + +++++L   GN IVTLR   +T H+RWQVFRGEST+ + +IF+AK  S ++ 
Sbjct: 61  EILLTFLHKKKLILDPAGNTIVTLRRKAMTAHSRWQVFRGESTDPKDVIFTAKTHSIFYL 120

Query: 110 RTTKLDVFLANN-TRKDACDFRVVKSSSRLSEPPSCTIYAGE--SSTIVDQ--------- 157
           +T KLDVFLANN T +  CDF+V  S        SC +YAG+  S+TIV Q         
Sbjct: 121 KT-KLDVFLANNNTDEKVCDFKVKGSFFE----RSCVVYAGDEDSTTIVAQMHKKHSAQS 175

Query: 158 -----------CIPTL----IVALILILDEINHARSSSSS 182
                        P +    IVALI+ILD+IN     ++S
Sbjct: 176 ILLGKTNFTVTVYPNIDYAFIVALIVILDDINREAQDAAS 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568182|ref|XP_003552292.1| PREDICTED: protein LURP-one-related 15-like [Glycine max]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 108/191 (56%), Gaps = 37/191 (19%)

Query: 17  VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPL--------MERRRVLLGGVGN 68
           VI PQ+C P+P+DLA+V+KV  LS GN  V D N             +  RR+L+   GN
Sbjct: 26  VIGPQFCAPYPLDLAVVKKVMTLSDGNFVVTDVNGNVVFKVKGSLMTLRDRRILVDAAGN 85

Query: 69  RIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACD 128
            +VTLR   +T H+RWQ FRGESTE + LIF+ K SS      TKLDVFLANNT++D CD
Sbjct: 86  PLVTLRRKIMTAHDRWQAFRGESTEAKDLIFTLKRSS-LIQFKTKLDVFLANNTKEDVCD 144

Query: 129 FRVVKSSSRLSEPPSCTIYAGESSTIV----------------DQCIPT--------LIV 164
           F+V    S L    SC +YAGES+ IV                DQ + T         +V
Sbjct: 145 FKV--KGSWLER--SCVVYAGESNNIVAQMHKKHTVQSILIGKDQFMVTVYPNIDYAFVV 200

Query: 165 ALILILDEINH 175
           ALI+ILDEIN 
Sbjct: 201 ALIVILDEINE 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504720|gb|AFK40426.1| unknown [Lotus japonicus]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 107/194 (55%), Gaps = 37/194 (19%)

Query: 17  VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTN-------DVSPLMER-RRVLLGGVGN 68
           V  PQYC P+P+DLAIV+KV  +S GN  V D N         S L  R RRVL+   GN
Sbjct: 26  VFGPQYCAPYPVDLAIVKKVMTISDGNFVVTDINGNIVFKVKGSLLTLRDRRVLIDAAGN 85

Query: 69  RIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACD 128
            I TLR   +T H+RWQ +RGESTE + LIF+ K SS      TKLDVFLA NT++D CD
Sbjct: 86  PIATLRRKIMTAHDRWQAYRGESTEAKDLIFTLKRSS-LIQFKTKLDVFLATNTKEDVCD 144

Query: 129 FRVVKSSSRLSEPPSCTIYAGESSTIVDQ--------------------CIPTL----IV 164
           F+V  S        SC +YAGES+TIV Q                      P +    IV
Sbjct: 145 FKVKGSWFE----RSCVVYAGESNTIVAQMHKKHTVQSILIGKDNFTVTVYPNIDYAFIV 200

Query: 165 ALILILDEINHARS 178
           ALI+ILDEIN   S
Sbjct: 201 ALIVILDEINEDES 214

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506501|ref|XP_003623539.1| hypothetical protein MTR_7g072170 [Medicago truncatula] gi|355498554|gb|AES79757.1| hypothetical protein MTR_7g072170 [Medicago truncatula]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/224 (41%), Positives = 120/224 (53%), Gaps = 40/224 (17%)

Query: 4   QPSSGGAVANLVP--VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTN-------DVSP 54
           QPS+      ++P  +  PQYC P+P+DLA+V+KV  +S GN  V D N        VS 
Sbjct: 8   QPSASAPPMPVLPTTIFGPQYCAPYPLDLAVVKKVIAISDGNFVVTDVNGNIVFKVKVSL 67

Query: 55  LMER-RRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTK 113
           L  R RRVL+    N I TLR   +T H+RW+ +RGEST+ + LIF+ K SS      TK
Sbjct: 68  LTFRDRRVLVDAADNPITTLRRKIVTMHDRWEAYRGESTDSKDLIFTLKRSS-LIQMKTK 126

Query: 114 LDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQC--------------- 158
           LDVFLANNT++D CDF+V  S        SC +YAGES+ IV Q                
Sbjct: 127 LDVFLANNTKEDVCDFKVKGSWFER----SCIVYAGESNNIVAQMHKKHTVQSLLIGKDH 182

Query: 159 -----IP----TLIVALILILDEINHARSSSSSIGGVGGGVIGG 193
                 P      IVALI+IL+EIN     S S G +   ++GG
Sbjct: 183 FMVTIYPNVDYAFIVALIVILNEINADEKGSES-GLLDEVLLGG 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516681|gb|AFK46402.1| unknown [Lotus japonicus]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 107/196 (54%), Gaps = 37/196 (18%)

Query: 17  VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTN-------DVSPLMER-RRVLLGGVGN 68
           V  PQYC P+P+DLAIV+KV  +S GN  V D N         S L  R RRVL+   GN
Sbjct: 26  VFGPQYCAPYPVDLAIVKKVMTISDGNFVVTDINGNIVFKVKGSLLTLRDRRVLIDAAGN 85

Query: 69  RIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACD 128
            I TLR   +T H+RWQ +RGESTE + LIF+ K SS      TKLDVFLA NT++D CD
Sbjct: 86  PIATLRRKIMTAHDRWQAYRGESTEAKDLIFTLKRSS-LIQFKTKLDVFLATNTKEDVCD 144

Query: 129 FRVVKSSSRLSEPPSCTIYAGESSTIVDQ--------------------CIPTL----IV 164
           F+V  S        SC +YAGES+TIV Q                      P +    IV
Sbjct: 145 FKVKGSWFE----RSCVVYAGESNTIVAQMHKKHTVQSILIGKDNFTVTVYPNIDYAFIV 200

Query: 165 ALILILDEINHARSSS 180
           ALI+ILDEIN    + 
Sbjct: 201 ALIVILDEINEDEKAE 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637572|gb|ACU19112.1| unknown [Glycine max]

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 107/191 (56%), Gaps = 37/191 (19%)

Query: 17  VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPL--------MERRRVLLGGVGN 68
           VI PQ+C  +P+DLA+V+KV  LS GN  V D N             +  RR+L+   GN
Sbjct: 26  VIGPQFCASYPLDLAVVKKVMTLSDGNFVVTDVNGNVVFKVKGSLMTLRDRRILVDAAGN 85

Query: 69  RIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACD 128
            +VTLR   +T H+RWQ FRGESTE + LIF+ K SS      TKLDVFLANNT++D CD
Sbjct: 86  PLVTLRRKIMTTHDRWQAFRGESTEAKDLIFTLKRSS-LIQFKTKLDVFLANNTKEDVCD 144

Query: 129 FRVVKSSSRLSEPPSCTIYAGESSTIV----------------DQCIPT--------LIV 164
           F+V    S L    SC +YAGES+ IV                DQ + T         +V
Sbjct: 145 FKV--KGSWLER--SCVVYAGESNNIVAQMHKKHTVQSILIGKDQFMVTVYPNIDYAFVV 200

Query: 165 ALILILDEINH 175
           ALI+ILDEIN 
Sbjct: 201 ALIVILDEINE 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532197|ref|XP_003534660.1| PREDICTED: protein LURP-one-related 15-like [Glycine max]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 115/207 (55%), Gaps = 40/207 (19%)

Query: 2   AQQPSSGGAVANLVP--VISPQYCCPHPIDLAIVRKVTVLS--------SGNIDVKDTND 51
           AQ   S  A    VP  VI PQ+C P+P+DLA+V+KV  +S        +GNI  K    
Sbjct: 9   AQPYPSASAPMPAVPSAVIGPQFCAPYPVDLAVVKKVMTISDNFVVTDVNGNIVFKVKGS 68

Query: 52  VSPLMERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRT 111
           ++ L +RR VLL   GN +VTLR   +T H+RWQ FRGEST+ + LIF+ K SS      
Sbjct: 69  LATLRDRR-VLLDAAGNPLVTLRRKIMTAHDRWQAFRGESTDAKDLIFTLKRSS-LIQFK 126

Query: 112 TKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ-------------- 157
           TKL VFLANNT++D CDF+V    S L    SC +YAGES+ IV Q              
Sbjct: 127 TKLHVFLANNTKEDVCDFKV--KGSWLER--SCVVYAGESNNIVAQMHKKHTVQSILIGK 182

Query: 158 ------CIPTL----IVALILILDEIN 174
                   P +    IVALI+ILDEIN
Sbjct: 183 DHFMVTVYPNIDYAFIVALIVILDEIN 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506493|ref|XP_003623535.1| hypothetical protein MTR_7g072120 [Medicago truncatula] gi|355498550|gb|AES79753.1| hypothetical protein MTR_7g072120 [Medicago truncatula] gi|388494416|gb|AFK35274.1| unknown [Medicago truncatula]

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 109/206 (52%), Gaps = 39/206 (18%)

Query: 4   QPSSGGAVANL--VPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTN-------DVSP 54
           QPS+   +  L    +  PQYC P+P+DLA+V+KV  +S GN  V D N         S 
Sbjct: 8   QPSASAPMPPLPTAAIFGPQYCAPYPVDLAVVKKVMTISDGNFAVTDVNGNIVFKVKGSL 67

Query: 55  LMER-RRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTK 113
           L  R RRVLL   GN I TLR   +T H+RW+ +RGEST  + LIF+ K SS      TK
Sbjct: 68  LTLRDRRVLLDAAGNPITTLRRKIVTMHDRWEAYRGESTHAKDLIFTLKRSS-LIQMKTK 126

Query: 114 LDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ---------------- 157
           LDVFLA NT++D CDF+V    S L    SC +YAGES+ IV Q                
Sbjct: 127 LDVFLAGNTKEDVCDFKV--RGSWLER--SCIVYAGESNNIVAQMHKKHTVTSILMDKDH 182

Query: 158 ----CIP----TLIVALILILDEINH 175
                 P      IVALI+ILDE N 
Sbjct: 183 FSVTVYPNVDYAFIVALIVILDETNE 208

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496281|ref|XP_003516997.1| PREDICTED: protein LURP-one-related 15-like [Glycine max]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 110/204 (53%), Gaps = 47/204 (23%)

Query: 3   QQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDV------SPLM 56
           QQPS          +I+P+YC P+ +DLAIVRKV  L+     V D N        + LM
Sbjct: 4   QQPSG---------IINPKYCAPYNVDLAIVRKVLALTDS-FTVTDVNGQIVFSLKASLM 53

Query: 57  --ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKL 114
                RVLL   G  +VTLR   ++ H+RWQ+FRGESTE + LIFS K SS +F   TKL
Sbjct: 54  TLHDHRVLLDAAGEPVVTLRRKLMSAHDRWQIFRGESTEPKDLIFSVKRSS-FFQLKTKL 112

Query: 115 DVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ----------------- 157
           DVFLANNT+++ CDF+V  S        SC +YAGES  IV Q                 
Sbjct: 113 DVFLANNTKEEVCDFKVKGSWFE----RSCVVYAGESLNIVAQMHKKHTVQSIVFGKDNF 168

Query: 158 ---CIPTL----IVALILILDEIN 174
                P +    IVALILILDEI+
Sbjct: 169 MVTVYPNIDYAFIVALILILDEIH 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722077|ref|NP_001238511.1| uncharacterized protein LOC100527088 [Glycine max] gi|255631528|gb|ACU16131.1| unknown [Glycine max]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/195 (44%), Positives = 103/195 (52%), Gaps = 38/195 (19%)

Query: 17  VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPL--------MERRRVLLGGVGN 68
           +I+P+YC P+ +DLAIVRKV  LS     V D N             +   RVLL   G 
Sbjct: 9   IINPKYCAPYNVDLAIVRKVLTLSDS-FTVTDVNGKIVFNLKGSLMTLHDHRVLLDAAGE 67

Query: 69  RIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACD 128
            I TLR   ++ H++WQVFRGESTE + LIFS K SS  F   TKLDVFLANNT+++ CD
Sbjct: 68  PIATLRRKIMSAHDQWQVFRGESTELKDLIFSVKKSSV-FQLKTKLDVFLANNTKEEVCD 126

Query: 129 FRVVKSSSRLSEPPSCTIYAGESSTIV----------------DQCIPT--------LIV 164
           F+V  S        SC +YAGES TI                 D  I T         IV
Sbjct: 127 FKVKGSWFE----RSCVVYAGESLTIAAQMHKKHTVQSIALGKDNFIVTVYPNIDYAFIV 182

Query: 165 ALILILDEINHARSS 179
           ALILILDEIN  +  
Sbjct: 183 ALILILDEINQDKKK 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2081481	194	AT3G11740 "AT3G11740" [Arabido	0.702	0.706	0.389	7.9e-24
TAIR|locus:2181082	217	AT5G01750 "AT5G01750" [Arabido	0.743	0.668	0.408	1.1e-23
TAIR|locus:2055250	207	LURP1 "AT2G14560" [Arabidopsis	0.687	0.647	0.374	9.2e-20
TAIR|locus:2086062	185	AT3G16900 "AT3G16900" [Arabido	0.738	0.778	0.310	5.6e-13
TAIR|locus:2078506	204	AT3G56180 "AT3G56180" [Arabido	0.630	0.602	0.313	2e-10

TAIR|locus:2081481 AT3G11740 "AT3G11740" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 58/149 (38%), Positives = 80/149 (53%)

Query:    17 VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTND------VSPLMEXXXXXXXXXX--N 68
             ++SP +C P+PI+L IVRKV  L+ GN  V D N         PL               
Sbjct:     3 IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAYDT 62

Query:    69 RIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACD 128
              I+TLR N ++ H+RW V+RG+ST++  L+++ K SS       KLD+FLA+N     CD
Sbjct:    63 PILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEMKICD 122

Query:   129 FRVVKSSSRLSEPPSCTIYAGESSTIVDQ 157
             F V    S +    SC +YAG+S  IV Q
Sbjct:   123 FHV--KGSWIDR--SCVVYAGKSDAIVAQ 147

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181082 AT5G01750 "AT5G01750" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 67/164 (40%), Positives = 89/164 (54%)

Query:     2 AQQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTND------VSPL 55
             A  P +GG V      + P+YC P+PID+AIVRK+  L+ GN  + D N         P+
Sbjct:    18 APTPQAGGVV------VDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPV 71

Query:    56 --MEXXXXXXXXXXNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTK 113
               +             +VTLR   ++ H+RWQVFRG ST++R L+++ K SS      TK
Sbjct:    72 FGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSS-MLQLKTK 130

Query:   114 LDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ 157
             LDVFL +N  +  CDFRV    S L    SC +YAGES  IV Q
Sbjct:   131 LDVFLGHNKDEKRCDFRV--KGSWLER--SCVVYAGESDAIVAQ 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2055250 LURP1 "AT2G14560" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 55/147 (37%), Positives = 81/147 (55%)

Query:    17 VISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDV------SPLMEXXXXXXXXXXN-- 68
             ++  +YC P+P+ LAIVRKV  ++ GN  +   +         PL            +  
Sbjct:     7 IVGSKYCSPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLFSLHGKRILLDCSGA 66

Query:    69 RIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACD 128
             +++TLR   +T H+RWQVFRG STE   L+++ K SS       KL+VFLANN  +  CD
Sbjct:    67 KVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSS-MIQLAPKLEVFLANNVEEKICD 125

Query:   129 FRVVKSSSRLSEPPSCTIYAGESSTIV 155
             F+V    + L +  SC +YAG+S TI+
Sbjct:   126 FKV--KGAWLDD--SCVVYAGDSDTII 148

GO:0003674 "molecular_function" evidence=ND

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

TAIR|locus:2086062 AT3G16900 "AT3G16900" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 50/161 (31%), Positives = 84/161 (52%)

Query:     1 MAQQ-PSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMEXX 59
             MA+Q P+S      ++P++  ++  P P+DL I       ++GN   K     +PL    
Sbjct:     1 MAKQDPTSSNT---MLPLVGSEFVRPQPLDLTITGDTVKDATGN---KVFKVKTPLFGLH 54

Query:    60 XXXXXXXXNR--IVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVF 117
                     N   IVT+++   ++H+RWQV+RG   + +  IF+ K SS      T+++VF
Sbjct:    55 NKRILVDPNDSPIVTMKMKVTSKHDRWQVYRGSDLDDK--IFTVKRSST-VQLKTRVEVF 111

Query:   118 LANN-TRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ 157
             L +N TR+ +CDF +     R  +  +CTIY  +S+ I+ Q
Sbjct:   112 LKHNQTRESSCDFTI---KGRFMKR-ACTIYVADSTKIIAQ 148

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2078506 AT3G56180 "AT3G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 43/137 (31%), Positives = 67/137 (48%)

Query:    15 VPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMEXXXXXXXXXXNR----- 69
             + V+S Q+C P+P+DL + RKV   S    +V D +  + L++           R     
Sbjct:    16 ISVVSDQFCNPYPMDLLVKRKVQNFSKDYYEVFDPSG-NLLLQIDGQAWGFNRKRVMRDP 74

Query:    70 ----IVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLA--NNTR 123
                 I+++R   +   N+W+V  GES ER  L+F+ + S    S  T +DVFL   NN +
Sbjct:    75 AGFTILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQA-VSLKTSVDVFLPENNNVK 133

Query:   124 K-DACDFRVVKSSSRLS 139
             K + CDF      S +S
Sbjct:   134 KTNTCDFHASGGYSNIS 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       169   0.00082  108 3  11 22  0.36    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  149 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.98u 0.15s 13.13t   Elapsed:  00:00:01
  Total cpu time:  12.98u 0.15s 13.13t   Elapsed:  00:00:01
  Start:  Sat May 11 02:41:03 2013   End:  Sat May 11 02:41:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
pfam04525	185	pfam04525, Tub_2, Tubby C 2	2e-17

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 20/154 (12%)

Query: 16  PVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTN-------DVSPLMERR--RVLLGGV 66
            V+S +Y  P P DL + RK  V +     V D+N       D          RVL+   
Sbjct: 2   VVVSSEYLSPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRVD-GYAFGLSDERVLMDSS 60

Query: 67  GNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNT---- 122
           GN ++T+R   ++ H+RW+V+RGE TE +  +F+ + SS      T   VF   N+    
Sbjct: 61  GNPLLTIRRKKLSLHDRWEVYRGEGTEGKDPLFTVRRSSI-VQLKTSSSVFSKRNSNVIV 119

Query: 123 -RKDACDFRVVKSSSRLSEPPSCTIYAGESSTIV 155
             +  CDF +  S        SC IY      I 
Sbjct: 120 DDEKNCDFDIKGSFLDR----SCKIYDDSDKLIA 149

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	100.0
COG4894	159	Uncharacterized conserved protein [Function unknow	99.77
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	98.83
COG4894	159	Uncharacterized conserved protein [Function unknow	97.71
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	97.09
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	95.55
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	91.37

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=100.00  E-value=4e-35  Score=240.67  Aligned_cols=148  Identities=29%  Similarity=0.562  Sum_probs=89.6

Q ss_pred             eeecCCccCCCCeEEEEEEEeeEEcCCCEEEEcCCCC------C-CCc--cCceEEECCCCCeeEEEEeccccccceeEE
Q 047297           16 PVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDV------S-PLM--ERRRVLLGGVGNRIVTLRLNTITQHNRWQV   86 (195)
Q Consensus        16 ~vv~~~~c~~~~~~LtV~~K~ls~~~~~ftV~D~~G~------g-~~~--~~~~~L~D~~G~~L~tir~K~ls~~~~W~v   86 (195)
                      .||+++||+++|++|+||||++++++++|+|+|++|+      + +++  ++++.|+|++|+||++|++|.++++++|++
T Consensus         2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i   81 (187)
T PF04525_consen    2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI   81 (187)
T ss_dssp             -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred             cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence            4799999999999999999999999999999999999      6 655  999999999999999999999999999999


Q ss_pred             EeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCC-----CCCcccEEEEcCCCCCCCCCeeEEEeCCCCcEEEEe---
Q 047297           87 FRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNT-----RKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQC---  158 (195)
Q Consensus        87 y~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~-----~~~~~d~~v~G~~~~~~~~~~~~I~~~~~g~~VAei---  158 (195)
                      |++++.+.++++|++||++. +..++++.+|+....     ..+.++|+|+|+|+    +++|+|++.+ |++||||   
T Consensus        82 ~~~~~~~~~~~i~tvkk~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~----~~~~~I~~~~-g~~VA~i~rk  155 (187)
T PF04525_consen   82 YRGGGSEGKKPIFTVKKKSM-LQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFW----DRSFTIYDSG-GRVVAEISRK  155 (187)
T ss_dssp             EETT---GGGEEEEEE-----------EEEEET--T----------SEEEES-TT----TT--EEEECC---EEEEEEE-
T ss_pred             EECCCCccCceEEEEEEecc-cCCCcceeEEEecccceeecCCCCceEEEEEEec----CcEEEEEEcC-CCEEEEEecc
Confidence            99998777899999999976 788999999998543     35788999999999    9999999744 8999999   


Q ss_pred             -----------------ch----HHHHHHHHH
Q 047297          159 -----------------IP----TLIVALILI  169 (195)
Q Consensus       159 -----------------~P----afi~aLvvi  169 (195)
                                       +|    |||||||||
T Consensus       156 ~~~k~~~~~~dty~l~V~pg~D~~lv~alvvi  187 (187)
T PF04525_consen  156 YSSKKWFSGRDTYTLTVAPGVDQALVVALVVI  187 (187)
T ss_dssp             ---------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred             cceeeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence                             33    999999986

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=1.9e-19  Score=142.33  Aligned_cols=126  Identities=13%  Similarity=0.273  Sum_probs=110.1

Q ss_pred             eEEEEEEEeeEEcCCCEEEEcCCCC------CCCc--cCceEEECCCCCeeEEEEeccccccceeEEEeCCCCCCceeEE
Q 047297           28 IDLAIVRKVTVLSSGNIDVKDTNDV------SPLM--ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIF   99 (195)
Q Consensus        28 ~~LtV~~K~ls~~~~~ftV~D~~G~------g~~~--~~~~~L~D~~G~~L~tir~K~ls~~~~W~vy~g~~~~~~~~lF   99 (195)
                      .+|.|+||+.++++ +|.|||..|+      |+.+  ++++.+.|++|.+|.+|++|.+++.+++++-.++.     -+|
T Consensus         6 ~tl~mkQk~~~~gd-~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g-----~~~   79 (159)
T COG4894           6 ITLFMKQKMFSFGD-AFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGG-----TVC   79 (159)
T ss_pred             HhHhhhhhhhhccc-ceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEcCCC-----CEE
Confidence            46889999988877 9999999999      5655  99999999999999999999999999999988764     389


Q ss_pred             EEEecccccCCCCeEEEEEcCCCCCCcccEEEEcCCCCCCCCCeeEEEeCCCCcEEEEe---------------ch----
Q 047297          100 SAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQC---------------IP----  160 (195)
Q Consensus       100 tVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~~~~~~~~~~~~I~~~~~g~~VAei---------------~P----  160 (195)
                      .|+|+..  ++|+++++        ...+|+++||+|    +.+|++.+|  ++++|+|               .|    
T Consensus        80 ~vrKK~t--f~Rdk~e~--------d~~~~eihGNi~----d~efkl~dg--~~~~aeVsKkwf~~rdTY~l~vapde~a  143 (159)
T COG4894          80 EVRKKVT--FSRDKFEI--------DGLNWEIHGNIW----DDEFKLTDG--ENVRAEVSKKWFSWRDTYHLQVAPDEDA  143 (159)
T ss_pred             EEEEEEE--EEeeeEEE--------cCCCeEEeccee----ceEEEEecC--CceehhheeeeEeccceEEEEEcCchhh
Confidence            9998876  44888888        335599999999    999999999  5699999               34    


Q ss_pred             HHHHHHHHHhchhcc
Q 047297          161 TLIVALILILDEINH  175 (195)
Q Consensus       161 afi~aLvvilD~i~~  175 (195)
                      ++|++++|+||.+.+
T Consensus       144 ~lii~i~VaLD~v~~  158 (159)
T COG4894         144 LLIIAIAVALDMVLY  158 (159)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            899999999999864

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=98.83  E-value=3.9e-07  Score=76.16  Aligned_cols=137  Identities=17%  Similarity=0.143  Sum_probs=97.0

Q ss_pred             EEEEEEEeeEE-------cCCCEEEEcCCCC--------C----CCc-----cCceEEECCCCCeeEEEEecc-cc----
Q 047297           29 DLAIVRKVTVL-------SSGNIDVKDTNDV--------S----PLM-----ERRRVLLGGVGNRIVTLRLNT-IT----   79 (195)
Q Consensus        29 ~LtV~~K~ls~-------~~~~ftV~D~~G~--------g----~~~-----~~~~~L~D~~G~~L~tir~K~-ls----   79 (195)
                      .+.|+|+.-.+       ..+.|.|+|.+|+        .    +..     .-+..++|..|+++++|+|.. +.    
T Consensus        23 ~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~~  102 (221)
T PF03803_consen   23 QLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCCP  102 (221)
T ss_pred             EEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceeccc
Confidence            67777775432       2479999999999        1    211     335688999999999999853 11    


Q ss_pred             -ccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCCCCCcccEEEEcCCCCCC--CCCeeEEEeCCCCcEEE
Q 047297           80 -QHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLS--EPPSCTIYAGESSTIVD  156 (195)
Q Consensus        80 -~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~~~~~~--~~~~~~I~~~~~g~~VA  156 (195)
                       ...+.+++..    ..+++.+|+++..  .++++++|+-+++    ..-++|+|...+.+  .++.|.|++.+ |..||
T Consensus       103 ~~~~~~~V~~p----~g~~iG~I~q~~~--~~~~~f~I~d~~~----~~~~~I~gp~~~~~~~~~~~F~I~~~~-~~~vg  171 (221)
T PF03803_consen  103 CCLQEMEVESP----PGNLIGSIRQPFS--CCRPNFDIFDANG----NPIFTIKGPCCCCSCCCDWEFEIKDPN-GQEVG  171 (221)
T ss_pred             ccceeEEEecC----CCcEEEEEEEcCc--ccceEEEEEECCC----ceEEEEeCCcceeccccceeeeeeccc-CcEEE
Confidence             1244555443    3479999998754  5688999986543    34588888733110  17889999966 78999


Q ss_pred             Ee--------------------------ch---HHHHHHHHHhchhccc
Q 047297          157 QC--------------------------IP---TLIVALILILDEINHA  176 (195)
Q Consensus       157 ei--------------------------~P---afi~aLvvilD~i~~~  176 (195)
                      +|                          ++   |+++|.++.+|.++-+
T Consensus       172 ~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe  220 (221)
T PF03803_consen  172 SITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFE  220 (221)
T ss_pred             EEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence            99                          22   9999999999998755

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.00025  Score=56.77  Aligned_cols=94  Identities=12%  Similarity=0.186  Sum_probs=71.0

Q ss_pred             CCCCeEEEEEEEeeEEcCCCEEEEcCCCCC------CCc--cCceEEECCCCCeeEEEEeccccccceeEEEe------C
Q 047297           24 CPHPIDLAIVRKVTVLSSGNIDVKDTNDVS------PLM--ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFR------G   89 (195)
Q Consensus        24 ~~~~~~LtV~~K~ls~~~~~ftV~D~~G~g------~~~--~~~~~L~D~~G~~L~tir~K~ls~~~~W~vy~------g   89 (195)
                      ...++++.|.-+.|++.+ .||++|+.|.-      ++.  ..+..+-|.+|+ ++.+|||..-.+++|++--      |
T Consensus        26 ~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~d~~~~eihG  103 (159)
T COG4894          26 RDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEIDGLNWEIHG  103 (159)
T ss_pred             CCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEEcCCCeEEec
Confidence            356789999999899887 79999999992      333  899999999999 8888888755578887621      1


Q ss_pred             C-------CCCCceeEEEEEecccccCCCCeEEEEEcCC
Q 047297           90 E-------STERRHLIFSAKISSGWFSRTTKLDVFLANN  121 (195)
Q Consensus        90 ~-------~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~  121 (195)
                      +       =+++++..++|+|+.  +..++.|.|.+++.
T Consensus       104 Ni~d~efkl~dg~~~~aeVsKkw--f~~rdTY~l~vapd  140 (159)
T COG4894         104 NIWDDEFKLTDGENVRAEVSKKW--FSWRDTYHLQVAPD  140 (159)
T ss_pred             ceeceEEEEecCCceehhheeee--EeccceEEEEEcCc
Confidence            1       012456888898773  67888998888654

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=97.09  E-value=0.0026  Score=52.03  Aligned_cols=72  Identities=11%  Similarity=0.164  Sum_probs=45.2

Q ss_pred             cCceEEECCCCCeeEEEEe-ccccccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCCCCCcccEEEEcC
Q 047297           57 ERRRVLLGGVGNRIVTLRL-NTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKS  134 (195)
Q Consensus        57 ~~~~~L~D~~G~~L~tir~-K~ls~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~  134 (195)
                      ++.+.+.|.+|++++++.. +.+++.++..++-.+    .++|++++++.  +.++++++++.++....+.+-++|+-.
T Consensus        27 ~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~----G~~L~~i~~k~--~~l~~~w~i~~~~~~~~~~~i~tvkk~   99 (187)
T PF04525_consen   27 GDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDAS----GNPLFTIRRKL--FSLRPTWEIYRGGGSEGKKPIFTVKKK   99 (187)
T ss_dssp             ---EEEEETTS-EEEEEE--SCTTBTTEEEEE-TT----S-EEEEEE----------EEEEEETT---GGGEEEEEE--
T ss_pred             CCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCC----CCEEEEEEeee--cccceEEEEEECCCCccCceEEEEEEe
Confidence            7889999999999999999 899999999887754    36999999864  478899999998764334556888766

; PDB: 1ZXU_A 2Q4M_A.

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=95.55  E-value=0.87  Score=40.47  Aligned_cols=133  Identities=11%  Similarity=0.078  Sum_probs=75.1

Q ss_pred             CCCEEEEcCCCC--------C----CCc-----cCceEEECCCCCeeEEEEeccccccc-eeEEEeCC---CCCCceeEE
Q 047297           41 SGNIDVKDTNDV--------S----PLM-----ERRRVLLGGVGNRIVTLRLNTITQHN-RWQVFRGE---STERRHLIF   99 (195)
Q Consensus        41 ~~~ftV~D~~G~--------g----~~~-----~~~~~L~D~~G~~L~tir~K~ls~~~-~W~vy~g~---~~~~~~~lF   99 (195)
                      .+.|.|.|.+|+        .    +.+     .-...++|.-|+++++++|..--... .+..=..+   ..-..-.+-
T Consensus        98 ~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~~~~lG  177 (292)
T KOG0621|consen   98 ANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPPMGLLG  177 (292)
T ss_pred             CcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCCCceEE
Confidence            479999999998        1    111     33568999999999999998633221 11000000   000112344


Q ss_pred             EEEecccccCCCCeEEEEEcCCCCCCcccEEEEcC-CCCC--CCCCeeEEEeCCCCcEEEEe------------------
Q 047297          100 SAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKS-SSRL--SEPPSCTIYAGESSTIVDQC------------------  158 (195)
Q Consensus       100 tVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~-~~~~--~~~~~~~I~~~~~g~~VAei------------------  158 (195)
                      +|....  ....++++|.-.    +...-|.|+|. .+..  -++..+.|...+.+.+|++|                  
T Consensus       178 ~v~q~~--~~~~~~f~i~~~----~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~f  251 (292)
T KOG0621|consen  178 KVLQTW--GCVNPNFHLWDR----DGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAFTDADTF  251 (292)
T ss_pred             EEEEee--ccccceEEEEcc----cceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhheecccee
Confidence            443332  233455555321    12223666665 1100  00444455444448889999                  


Q ss_pred             ---ch--------HHHHHHHHHhchhcccCCC
Q 047297          159 ---IP--------TLIVALILILDEINHARSS  179 (195)
Q Consensus       159 ---~P--------afi~aLvvilD~i~~~~~~  179 (195)
                         .|        |+++|-++-+|.+.-+.+.
T Consensus       252 ~v~FPldLdvk~kavllga~flID~~~Fe~~~  283 (292)
T KOG0621|consen  252 VVHFPLDLDVKLKALLLGSTFLIDYMSFESRG  283 (292)
T ss_pred             eEecCCcCCHHHHhhhhhheeeEEEEEEecCC
Confidence               33        9999999999999888874

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=91.37  E-value=4.7  Score=33.38  Aligned_cols=94  Identities=11%  Similarity=0.050  Sum_probs=58.4

Q ss_pred             cCceEEECCCCCeeEEEEecc-------ccccceeEEEeCCCCCCceeEEEEEecccccC----CCCeEEEEEcCCCCCC
Q 047297           57 ERRRVLLGGVGNRIVTLRLNT-------ITQHNRWQVFRGESTERRHLIFSAKISSGWFS----RTTKLDVFLANNTRKD  125 (195)
Q Consensus        57 ~~~~~L~D~~G~~L~tir~K~-------ls~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~----~k~~~~Vfl~~~~~~~  125 (195)
                      .++..++|.+|++|+...++.       +.-++.++...-+.  .++++++++|+..|..    ...+++|+-+++   +
T Consensus        42 ~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~--~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g---~  116 (221)
T PF03803_consen   42 PNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDN--YGREVLTIERPFKCCSCCPCCLQEMEVESPPG---N  116 (221)
T ss_pred             CceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEec--CCCEEEEEEcCCcceecccccceeEEEecCCC---c
Confidence            788999999999999998773       22222333222121  2468999999876322    134566643332   2


Q ss_pred             cccEEE-EcCCCCCCCCCeeEEEeCCCCcEEEEe-ch
Q 047297          126 ACDFRV-VKSSSRLSEPPSCTIYAGESSTIVDQC-IP  160 (195)
Q Consensus       126 ~~d~~v-~G~~~~~~~~~~~~I~~~~~g~~VAei-~P  160 (195)
                      ...+-. .-+++    ...|.|++.+ ++.++.| .|
T Consensus       117 ~iG~I~q~~~~~----~~~f~I~d~~-~~~~~~I~gp  148 (221)
T PF03803_consen  117 LIGSIRQPFSCC----RPNFDIFDAN-GNPIFTIKGP  148 (221)
T ss_pred             EEEEEEEcCccc----ceEEEEEECC-CceEEEEeCC
Confidence            222111 23556    8899999987 7888999 56

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
1zxu_A	217	X-Ray Structure Of Protein From Arabidopsis Thalian		7e-25

>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At5g01750 Length = 217

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 100/206 (48%), Gaps = 45/206 (21%)
Query: 2   AQQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDVSPLMEXXXX 61
           A  P +GG V      + P+YC P+PID AIVRK   L+ GN  + D N  + L +    
Sbjct: 18  APTPQAGGVV------VDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNG-NLLFKVKEP 70
Query: 62  XXXXXXNRI---------VTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTT 112
                  R+         VTLR   ++ H+RWQVFRG ST++R L+++ K SS      T
Sbjct: 71  VFGLHDKRVLLDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSX-LQLKT 129
Query: 113 KLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIVDQ--------------- 157
           KLDVFL +N  +  CDFRV    S L    SC +YAGES  IV Q               
Sbjct: 130 KLDVFLGHNKDEKRCDFRV--KGSWLER--SCVVYAGESDAIVAQXHRKHTVQSVFLGKD 185
Query: 158 -----CIP----TLIVALILILDEIN 174
                  P      I +L++ILD++N
Sbjct: 186 NFSVTVYPNVDYAFIASLVVILDDVN 211
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	2e-28

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score =  105 bits (262), Expect = 2e-28
 Identities = 74/211 (35%), Positives = 103/211 (48%), Gaps = 37/211 (17%)

Query: 2   AQQPSSGGAVANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTN-------DVSP 54
              PS          V+ P+YC P+PID+AIVRK+  L+ GN  + D N           
Sbjct: 12  GSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPV 71

Query: 55  L-MERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTK 113
             +  +RVLL G G  +VTLR   ++ H+RWQVFRG ST++R L+++ K SS    + TK
Sbjct: 72  FGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLK-TK 130

Query: 114 LDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAGESSTIV------------------ 155
           LDVFL +N  +  CDFRV  S        SC +YAGES  IV                  
Sbjct: 131 LDVFLGHNKDEKRCDFRVKGSWLER----SCVVYAGESDAIVAQMHRKHTVQSVFLGKDN 186

Query: 156 ------DQCIPTLIVALILILDEINHARSSS 180
                        I +L++ILD++N    ++
Sbjct: 187 FSVTVYPNVDYAFIASLVVILDDVNREDRAA 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	97.7

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=5e-38  Score=261.84  Aligned_cols=172  Identities=45%  Similarity=0.776  Sum_probs=126.1

Q ss_pred             CCCCCCCC-----CCCceeeecCCccCCCCeEEEEEEEeeEEcCCCEEEEcCCCC------CCCc--cCceEEECCCCCe
Q 047297            3 QQPSSGGA-----VANLVPVISPQYCCPHPIDLAIVRKVTVLSSGNIDVKDTNDV------SPLM--ERRRVLLGGVGNR   69 (195)
Q Consensus         3 ~~~~~~~~-----~~~~~~vv~~~~c~~~~~~LtV~~K~ls~~~~~ftV~D~~G~------g~~~--~~~~~L~D~~G~~   69 (195)
                      ++|++++|     +.+|++||+++||++++++|+||||++++++++|+|+|++|+      ++.+  ++++.|+|++|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~   87 (217)
T 1zxu_A            8 AYPQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTP   87 (217)
T ss_dssp             ----------------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCE
T ss_pred             eCCCCCCCCCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCE
Confidence            46777776     334788999999999999999999999999999999999999      3433  8999999999999


Q ss_pred             eEEEEeccccccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCCCCCcccEEEEcCCCCCCCCCeeEEEeC
Q 047297           70 IVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKSSSRLSEPPSCTIYAG  149 (195)
Q Consensus        70 L~tir~K~ls~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~~~~~~~~~~~~I~~~  149 (195)
                      |++|+||.++++++|++|++++.+.++++|+|||++. +.++++++|+++++..++.++|+|+|+|+    +++|+|+++
T Consensus        88 l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~-~~~~~~~~V~~~~~~~~~~~~~~I~G~~~----~~~f~I~~~  162 (217)
T 1zxu_A           88 VVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSM-LQLKTKLDVFLGHNKDEKRCDFRVKGSWL----ERSCVVYAG  162 (217)
T ss_dssp             EEEEEC------CEEEEEETTCCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESCTT----TTCCEEEET
T ss_pred             EEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEecc-ccCCCeEEEEECCCCCCCceEEEEEEeEe----CCEEEEEEC
Confidence            9999999999999999999987666689999999864 45789999999887666678999999999    999999998


Q ss_pred             CCCcEEEEe--------------------ch----HHHHHHHHHhchhcccCCC
Q 047297          150 ESSTIVDQC--------------------IP----TLIVALILILDEINHARSS  179 (195)
Q Consensus       150 ~~g~~VAei--------------------~P----afi~aLvvilD~i~~~~~~  179 (195)
                      ++|.+||+|                    .|    +|+|||+++||+|++++++
T Consensus       163 ~~~~~Va~I~kk~~~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~~  216 (217)
T 1zxu_A          163 ESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDRA  216 (217)
T ss_dssp             TTCCEEEEEEEC--------CBCSEEEEECTTSBHHHHHHHHHHHHHHHC----
T ss_pred             CCCEEEEEEEeeeeccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhccC
Confidence            656899999                    23    9999999999999998764

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=97.70  E-value=0.00016  Score=59.38  Aligned_cols=83  Identities=14%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             cCceEEECCCCCeeEEEEeccccccceeEEEeCCCCCCceeEEEEEecccccCCCCeEEEEEcCCCCCCcccEEEEcC--
Q 047297           57 ERRRVLLGGVGNRIVTLRLNTITQHNRWQVFRGESTERRHLIFSAKISSGWFSRTTKLDVFLANNTRKDACDFRVVKS--  134 (195)
Q Consensus        57 ~~~~~L~D~~G~~L~tir~K~ls~~~~W~vy~g~~~~~~~~lFtVkk~~~~~~~k~~~~Vfl~~~~~~~~~d~~v~G~--  134 (195)
                      .++..++|.+|+.++++..+.+++..+..+|...    .+++++++|+..  .+..+++|+.+.......+-++|+-+  
T Consensus        51 ~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~----G~~l~~i~rk~~--~~~~~~~v~~~~~~~~~~~i~~vrk~~~  124 (217)
T 1zxu_A           51 DGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGS----GTPVVTLREKMV--SMHDRWQVFRGGSTDQRDLLYTVKRSSM  124 (217)
T ss_dssp             CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTT----SCEEEEEEC--------CEEEEEETTCCCGGGEEEEEEC---
T ss_pred             CCCEEEEeCCCCEEEEEEccccCCCCEEEEECCC----CCEEEEEEcccc--ccCcEEEEEcCCCCCCCcEEEEEEEecc
Confidence            4589999999999999999988888888887654    469999998754  56889999986542212346777654  


Q ss_pred             C-CCCCCCCeeEEEeC
Q 047297          135 S-SRLSEPPSCTIYAG  149 (195)
Q Consensus       135 ~-~~~~~~~~~~I~~~  149 (195)
                      + +    +..|.|...
T Consensus       125 ~~~----~~~~~V~~~  136 (217)
T 1zxu_A          125 LQL----KTKLDVFLG  136 (217)
T ss_dssp             --------CCEEEEET
T ss_pred             ccC----CCeEEEEEC
Confidence            3 3    567888865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	1e-26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	97.5